Citrus Sinensis ID: 042690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
SGCLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVCK
Secondary Structure (PSIPRED)
ccccccccccccccEEHHHHHHHHccccccccccccccEEEEEEEccccccEEEEEEccHHHHHccccccccEEEEEccccEEEEEEEccccccHHHHHcccccccHHHHHHHHHccEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccHHcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccEEEcccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccEEcHHHHHHHHccccHHcccccccccEEccccccccHEEEHHHHHHHHHHHHHHHHHHHHHEEEcccccEEEEEEEcccccHHHHHcccccccHHHHHHHccccEEEEcccHccEEEcccccccHcHccHHEEccccccEEEEEEEEccccccHHHHHccccccccHHHHHHEEEEEEHcccccccccccHHHHHHHHHHHHHHHHccHcccccHHHHHHHHccccccccccccccEEEcccccccccccccc
Coil and Loop (DISEMBL)
sgclilnleadpsqyenrvfGSFSHIyslkkpcggsfstvytgvlapgdktnigvkklDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHdyftvetsDLGLAKLLMINQTQTltgmretkgylppewfrnmpvtvkVDVYSFGVMLLEIISCRcverqgsdpktlekPVMIAIQFvkekpplrpsLRIVALMLQSIlevpsppcsfAFAIRIGSSAISQVCVCK
Flexible Loop (DISEMBL)
sgclilnleadpsqyeNRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKgylppewfrnmPVTVKVDVYSFGVMLLEIISCRCVErqgsdpktlekPVMIAIQFvkekpplrpSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVCK
Low Complexity Region (SEG)
SGCLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVCK
Disordered region (IsUnstruct)
**CLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG***KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVC*
Disordered Region (DISOPRED)
*******LEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVE****DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS*********************C*
Disordered Region (DISEMBL)
SGCLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVCK
Disordered Region (DISPRO)
*GCLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAI**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SGCLILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIRIGSSAISQVCVCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q39202	832	G-type lectin S-receptor-	yes	no	0.793	0.253	0.370	7e-40
Q9XID3	829	G-type lectin S-receptor-	no	no	0.804	0.258	0.305	1e-26
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.597	0.182	0.357	9e-24
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.943	0.305	0.271	3e-23
O64477	828	G-type lectin S-receptor-	no	no	0.785	0.252	0.301	2e-22
O65238	872	G-type lectin S-receptor-	no	no	0.770	0.235	0.295	1e-21
Q3E9X6	690	Cysteine-rich receptor-li	no	no	0.838	0.323	0.293	2e-21
O65468	676	Cysteine-rich receptor-li	no	no	0.890	0.350	0.289	2e-20
Q8L7G3	659	Cysteine-rich receptor-li	no	no	0.860	0.347	0.289	2e-20
Q9C5S9	674	Cysteine-rich receptor-li	no	no	0.890	0.351	0.289	3e-20

>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/270 (37%), Positives = 146/270 (54%), Gaps = 59/270 (21%)

Query: 35  GSFSTVYTGVL--APGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHI 78
           G+F  VY G L  A G +  + VKKLD              KV+   HHKNLV L+G+  
Sbjct: 540 GAFGIVYKGYLEVAGGSEVTVAVKKLDRLDLDNEKEFKNEVKVIGQIHHKNLVRLIGFCN 599

Query: 79  EQECRLLVYKFMHNRSISSLLYECLRPTWQQRM--------------QDCIRDCWRTRAL 124
           E + +++VY+F+   ++++ L+   RP+W+ R               ++C          
Sbjct: 600 EGQSQMIVYEFLPQGTLANFLFRRPRPSWEDRKNIAVAIARGILYLHEECSEQIIHCDIK 659

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
              ILL +Y+T   SD GLAKLL++NQT TLT +R TKGY+ PEWFRN P+T KVDVYS+
Sbjct: 660 PQNILLDEYYTPRISDFGLAKLLLMNQTYTLTNIRGTKGYVAPEWFRNSPITSKVDVYSY 719

Query: 185 GVMLLEIISCR-CVE---------------RQG-------------SDPKTLEKPVMIAI 215
           GVMLLEI+ C+  V+               RQG             +D +T+E+ V IAI
Sbjct: 720 GVMLLEIVCCKKAVDLEDNVILINWAYDCFRQGRLEDLTEDDSEAMNDMETVERYVKIAI 779

Query: 216 QFVKEKPPLRPSLRIVALMLQSILEVPSPP 245
             ++E+  +RP++R V  ML+ +++V  PP
Sbjct: 780 WCIQEEHGMRPNMRNVTQMLEGVIQVFDPP 809

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 131/288 (45%), Gaps = 74/288 (25%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKV-------------VHVAHHKNLVCL 73
           S K+  G G F TVY GVL   ++T + VK+L+ +             +   HH NLV L
Sbjct: 485 SFKEKLGAGGFGTVYRGVLT--NRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRL 542

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRP---TWQQRM-----------------QD 113
           +G+  +   RLLVY+FM N S+ + L+        TW+ R                  +D
Sbjct: 543 IGFCSQGRHRLLVYEFMRNGSLDNFLFTTDSAKFLTWEYRFNIALGTAKGITYLHEECRD 602

Query: 114 CIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRN 172
           CI  C         IL+ D F  + SD GLAKLL     +  ++ +R T+GYL PEW  N
Sbjct: 603 CIVHC---DIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAPEWLAN 659

Query: 173 MPVTVKVDVYSFGVMLLEIIS----------------------------------CRCVE 198
           +P+T K DVYS+G++LLE++S                                   R  E
Sbjct: 660 LPITSKSDVYSYGMVLLELVSGKRNFDVSEKTNHKKFSIWAYEEFEKGNTKAILDTRLSE 719

Query: 199 RQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC 246
            Q  D + + + V  +   ++E+P  RP++  V  ML+ I E+ +P C
Sbjct: 720 DQTVDMEQVMRMVKTSFWCIQEQPLQRPTMGKVVQMLEGITEIKNPLC 767

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 97/193 (50%), Gaps = 34/193 (17%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKV--------------VHVAHHKNLVCLLGYHIEQ 80
           G F TVY G +A   +T + VK+LD+               +   HH NLV L GY  E 
Sbjct: 539 GGFGTVYKGTVA--GETLVAVKRLDRALSHGEREFITEVNTIGSMHHMNLVRLCGYCSED 596

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPT----WQQRMQDCIRDCW---------RTRALAC- 126
             RLLVY++M N S+   ++   +      W+ R +  +             R R + C 
Sbjct: 597 SHRLLVYEYMINGSLDKWIFSSEQTANLLDWRTRFEIAVATAQGIAYFHEQCRNRIIHCD 656

Query: 127 ----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVY 182
                ILL D F  + SD GLAK++    +  +T +R T+GYL PEW  N P+TVK DVY
Sbjct: 657 IKPENILLDDNFCPKVSDFGLAKMMGREHSHVVTMIRGTRGYLAPEWVSNRPITVKADVY 716

Query: 183 SFGVMLLEIISCR 195
           S+G++LLEI+  R
Sbjct: 717 SYGMLLLEIVGGR 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 136/328 (41%), Gaps = 77/328 (23%)

Query: 4   LILNLEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---- 59
            + NL   P ++  +   S ++ +S+K   GG F +VY G L  G +  + VKKL+    
Sbjct: 472 FLENLSGMPIRFAYKDLQSATNNFSVKLGQGG-FGSVYEGTLPDGSR--LAVKKLEGIGQ 528

Query: 60  ---------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---- 106
                     ++   HH +LV L G+  E   RLL Y+F+   S+   ++          
Sbjct: 529 GKKEFRAEVSIIGSIHHLHLVRLRGFCAEGAHRLLAYEFLSKGSLERWIFRKKDGDVLLD 588

Query: 107 WQQRMQDCI----------RDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ 151
           W  R    +           DC   R + C      ILL D F  + SD GLAKL+   Q
Sbjct: 589 WDTRFNIALGTAKGLAYLHEDC-DARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQ 647

Query: 152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP------- 204
           +   T MR T+GYL PEW  N  ++ K DVYS+G++LLE+I      R+  DP       
Sbjct: 648 SHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGG----RKNYDPSETSEKC 703

Query: 205 ------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM 234
                                         + +++ +  A+  ++E    RPS+  V  M
Sbjct: 704 HFPSFAFKKMEEGKLMDIVDGKMKNVDVTDERVQRAMKTALWCIQEDMQTRPSMSKVVQM 763

Query: 235 LQSILEVPSPPCSFAFAIRIGSSAISQV 262
           L+ +  V  PP S     R+ SS    +
Sbjct: 764 LEGVFPVVQPPSSSTMGSRLYSSFFKSI 791

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 122/285 (42%), Gaps = 76/285 (26%)

Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDKV-------------VHVAHHKNLVCLLGYH 77
           K  GG F +V+ G L   D ++I VK+L+ +             +    H NLV L G+ 
Sbjct: 498 KLGGGGFGSVFKGALP--DSSDIAVKRLEGISQGEKQFRTEVVTIGTIQHVNLVRLRGFC 555

Query: 78  IEQECRLLVYKFMHNRSISSLLY-----ECLRPTWQQRMQ-------------DCIRDCW 119
            E   +LLVY +M N S+ S L+     E +   W+ R Q             D  RDC 
Sbjct: 556 SEGSKKLLVYDYMPNGSLDSHLFLNQVEEKIVLGWKLRFQIALGTARGLAYLHDECRDC- 614

Query: 120 RTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMP 174
               + C      ILL   F  + +D GLAKL+  + ++ LT MR T+GYL PEW   + 
Sbjct: 615 ---IIHCDIKPENILLDSQFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVA 671

Query: 175 VTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE-------KPPL--- 224
           +T K DVYS+G+ML E++S R    Q  + K    P   A    K+        P L   
Sbjct: 672 ITAKADVYSYGMMLFELVSGRRNTEQSENEKVRFFPSWAATILTKDGDIRSLVDPRLEGD 731

Query: 225 ------------------------RPSLRIVALMLQSILEVPSPP 245
                                   RP++  V  +L+ +LEV  PP
Sbjct: 732 AVDIEEVTRACKVACWCIQDEESHRPAMSQVVQILEGVLEVNPPP 776

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 124/294 (42%), Gaps = 89/294 (30%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLVCLLGYHIEQ 80
           G F +VY G L   D+T I VKK+                ++    H NLV L G+    
Sbjct: 524 GGFGSVYKGTLP--DETLIAVKKITNHGLHGRQEFCTEIAIIGNIRHTNLVKLRGFCARG 581

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPT--WQQRMQDCIRDCWRTRALAC------------ 126
              LLVY++M++ S+   L+    P   WQ+R    +      R LA             
Sbjct: 582 RQLLLVYEYMNHGSLEKTLFSGNGPVLEWQERFDIALGTA---RGLAYLHSGCDQKIIHC 638

Query: 127 -----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDV 181
                 ILLHD+F  + SD GL+KLL   ++   T MR T+GYL PEW  N  ++ K DV
Sbjct: 639 DVKPENILLHDHFQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPEWITNAAISEKADV 698

Query: 182 YSFGVMLLEIISCR--CVER------------------------------------QG-- 201
           YS+G++LLE++S R  C  R                                    QG  
Sbjct: 699 YSYGMVLLELVSGRKNCSFRSRSNSVTEDNNQNHSSTTTTSTGLVYFPLYALDMHEQGRY 758

Query: 202 ---SDPK--------TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
              +DP+          EK V IA+  V E+P LRP++  V  M +  + + +P
Sbjct: 759 MELADPRLEGRVTSQEAEKLVRIALCCVHEEPALRPTMAAVVGMFEGSIPLGNP 812

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q3E9X6|CRK21_ARATH Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 126/293 (43%), Gaps = 70/293 (23%)

Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKN 69
           S+ +   K   G F  VY G+   G  T +  K+L K              +V    HKN
Sbjct: 361 SNFHKSNKLGHGGFGAVYKGMFPNG--TEVAAKRLSKPSDQGEPEFKNEVLLVARLQHKN 418

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---WQQRM--------------Q 112
           LV LLG+ +E E ++LVY+F+ N+S+   L++ ++     W +R               Q
Sbjct: 419 LVGLLGFSVEGEEKILVYEFVPNKSLDHFLFDPIKRVQLDWPRRHNIIEGITRGILYLHQ 478

Query: 113 DCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTG-MRETKGYLPPEWFR 171
           D           A  ILL      + +D GLA+   +NQT+  TG +  T GY+PPE+  
Sbjct: 479 DSRLTIIHRDLKASNILLDAEMNPKIADFGLARNFRVNQTEANTGRVVGTFGYMPPEYVA 538

Query: 172 NMPVTVKVDVYSFGVMLLEIISCRC--------------------VERQGS-----DPKT 206
           N   + K DVYSFGV++LEII  +                     +   GS     DP  
Sbjct: 539 NGQFSTKSDVYSFGVLILEIIGGKKNSSFHQIDGSVSNLVTHVWRLRNNGSLLELVDPAI 598

Query: 207 LE--------KPVMIAIQFVKEKPPLRPSLRIVALMLQSI---LEVPSPPCSF 248
            E        + + I +  V+E P  RPS+  +  ML ++   L VP PP  F
Sbjct: 599 GENYDKDEVIRCIHIGLLCVQENPDDRPSMSTIFRMLTNVSITLPVPQPPGFF 651

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|O65468|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 135/307 (43%), Gaps = 70/307 (22%)

Query: 10  ADPSQYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------- 60
           AD  Q + R   + ++ ++     G G F  VY G  + G +  + VK+L K        
Sbjct: 336 ADSLQLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKE--VAVKRLSKNSRQGEAE 393

Query: 61  ------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---WQQRM 111
                 VV    H+NLV LLG+ ++ E R+LVY++M N+S+  LL++  + T   W QR 
Sbjct: 394 FKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQTQLDWMQRY 453

Query: 112 --------------QDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                         QD           A  ILL      + +D G+A++  ++QTQ  T 
Sbjct: 454 NIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTS 513

Query: 158 -MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR----CVERQGS---------- 202
            +  T GY+ PE+  +   ++K DVYSFGV++LEIIS R      E  G+          
Sbjct: 514 RIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFDESDGAQDLLTHTWRL 573

Query: 203 ----------DP--------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS---ILEV 241
                     DP          + + + I +  V+E P  RP++  V +ML S    L V
Sbjct: 574 WTNRTALDLVDPLIANNCQNSEVVRCIHIGLLCVQEDPAKRPTISTVFMMLTSNTVTLPV 633

Query: 242 PSPPCSF 248
           P  P  F
Sbjct: 634 PRQPGFF 640

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8L7G3|CRK7_ARATH Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 135/297 (45%), Gaps = 68/297 (22%)

Query: 14  QYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK------------ 60
           Q + R   + ++ +S     G G F  VY G  + G  T + VK+L K            
Sbjct: 323 QLDYRAIQAATNDFSENNKIGRGGFGDVYKGTFSNG--TEVAVKRLSKTSEQGDTEFKNE 380

Query: 61  VVHVAH--HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---WQQRM---- 111
           VV VA+  HKNLV +LG+ IE+E R+LVY+++ N+S+ + L++  +     W QR     
Sbjct: 381 VVVVANLRHKNLVRILGFSIEREERILVYEYVENKSLDNFLFDPAKKGQLYWTQRYHIIG 440

Query: 112 ----------QDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTG-MRE 160
                     QD           A  ILL      + +D G+A++  ++QTQ  T  +  
Sbjct: 441 GIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKIADFGMARIFGMDQTQQNTSRIVG 500

Query: 161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVE-------------------RQG 201
           T GY+ PE+      ++K DVYSFGV++LEIIS R                      R G
Sbjct: 501 TYGYMSPEYAMRGQFSMKSDVYSFGVLVLEIISGRKNNSFIETDDAQDLVTHAWRLWRNG 560

Query: 202 S-----DP--------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS-ILEVPSP 244
           +     DP          + +   I +  V+E P  RP++  +++ML S  + +P+P
Sbjct: 561 TALDLVDPFIADSCRKSEVVRCTHIGLLCVQEDPVKRPAMSTISVMLTSNTMALPAP 617

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9C5S9|CRK6_ARATH Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 134/307 (43%), Gaps = 70/307 (22%)

Query: 10  ADPSQYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------- 60
           AD  Q + R   + ++ ++     G G F  VY G  + G +  + VK+L K        
Sbjct: 334 ADSLQLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKE--VAVKRLSKNSRQGEAE 391

Query: 61  ------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP---TWQQRM 111
                 VV    H+NLV LLG+ ++ E R+LVY++M N+S+  LL++  +     W QR 
Sbjct: 392 FKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQIQLDWMQRY 451

Query: 112 --------------QDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                         QD           A  ILL      + +D G+A++  ++QTQ  T 
Sbjct: 452 NIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTS 511

Query: 158 -MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR----CVERQGS---------- 202
            +  T GY+ PE+  +   ++K DVYSFGV++LEIIS R      E  G+          
Sbjct: 512 RIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFGESDGAQDLLTHAWRL 571

Query: 203 ----------DPKTLE--------KPVMIAIQFVKEKPPLRPSLRIVALMLQS---ILEV 241
                     DP   E        + + I +  V+E P  RP++  V +ML S    L V
Sbjct: 572 WTNKKALDLVDPLIAENCQNSEVVRCIHIGLLCVQEDPAKRPAISTVFMMLTSNTVTLPV 631

Query: 242 PSPPCSF 248
           P  P  F
Sbjct: 632 PRQPGFF 638

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
255542171	822	BRASSINOSTEROID INSENSITIVE 1-associated	0.778	0.251	0.473	7e-50
224143655	417	predicted protein [Populus trichocarpa]	0.812	0.517	0.417	1e-46
359487487	808	PREDICTED: G-type lectin S-receptor-like	0.800	0.263	0.422	1e-45
224120872	704	predicted protein [Populus trichocarpa]	0.812	0.306	0.4	5e-44
224073224	699	predicted protein [Populus trichocarpa]	0.898	0.341	0.374	8e-44
224143661	691	predicted protein [Populus trichocarpa]	0.812	0.312	0.394	9e-44
359487480	793	PREDICTED: G-type lectin S-receptor-like	0.812	0.272	0.412	2e-43
356555135	815	PREDICTED: G-type lectin S-receptor-like	0.793	0.258	0.394	3e-43
356503089	807	PREDICTED: G-type lectin S-receptor-like	0.793	0.261	0.394	3e-43
356528738	816	PREDICTED: G-type lectin S-receptor-like	0.819	0.267	0.385	4e-43

>gi|255542171|ref|XP_002512149.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223548693|gb|EEF50183.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/266 (47%), Positives = 150/266 (56%), Gaps = 59/266 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA--------------HHKNLVCLLGYHIEQ 80
           G+F TVY G+L    +  I VKKL+K+V                 HHKNLV LLGY  E 
Sbjct: 525 GAFGTVYKGLLPSSTRNYIAVKKLEKMVQEGQKEFLSEVNTIGQTHHKNLVQLLGYCYEG 584

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQ--------------DCIRDCWRTRALAC 126
           E RLLVY+FM N S+SS L+   R  WQQR+Q              +C +          
Sbjct: 585 EGRLLVYEFMQNGSLSSFLFGSPRLNWQQRVQIASGIARGLMYLHEECSKQIIHCDIKPQ 644

Query: 127 RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV 186
            ILL D FT + SD GLAKLL+ NQT+TLTG+R TKGY+ PEWFRN PV+VKVDVYSFGV
Sbjct: 645 NILLDDTFTAKISDFGLAKLLINNQTRTLTGIRGTKGYVAPEWFRNTPVSVKVDVYSFGV 704

Query: 187 MLLEIISC-RCVE-----------------RQG-------------SDPKTLEKPVMIAI 215
           MLLEII C RCVE                  QG             SD K LEK VM+A+
Sbjct: 705 MLLEIICCRRCVEFEMEKEAILADWAYECYHQGKVETLVLNDQEARSDLKKLEKFVMVAL 764

Query: 216 QFVKEKPPLRPSLRIVALMLQSILEV 241
             V+++P LRPS+R V LML+ ILEV
Sbjct: 765 WCVQDEPLLRPSMRTVTLMLEGILEV 790

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143655|ref|XP_002336065.1| predicted protein [Populus trichocarpa] gi|222869873|gb|EEF07004.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/278 (41%), Positives = 151/278 (54%), Gaps = 62/278 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA--------------HHKNLVCLLGYHIEQ 80
           G+F  VY G +  G    I VKKLD VV                 HHKNLV LLG+  E 
Sbjct: 136 GAFGGVYKGAIKTGFTNFIAVKKLDGVVEHGEKEFKTEVTVIGQTHHKNLVRLLGFCDEG 195

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALAC---- 126
           + RLLVY+F+ N +++  L+  LRP+W+QR Q              +C  T+ + C    
Sbjct: 196 QHRLLVYEFLSNGTLADFLFGSLRPSWKQRTQIAFGIARGLLYLHEEC-STQIIHCDIKP 254

Query: 127 -RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
             IL+ DY+    SD GLAKLL INQ+QT T +R TKGY+ PEWFRN PVTVKVDVYSFG
Sbjct: 255 QNILIDDYYNARISDFGLAKLLAINQSQTKTAIRGTKGYVAPEWFRNTPVTVKVDVYSFG 314

Query: 186 VMLLEIISC-RCVE------------------RQGS-------------DPKTLEKPVMI 213
           V+LLEII C R V+                  R G+             D  TLE+ + +
Sbjct: 315 VLLLEIICCRRSVDLEISGTGAILIDWAYDCYRHGTLDALIEDDMEAMNDVSTLERAMKV 374

Query: 214 AIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFA 251
           AI  ++E P LRP++R V  ML+ ++EVP+PP  F F+
Sbjct: 375 AIWCIQEVPSLRPTMRKVTQMLEGVVEVPAPPNPFPFS 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487487|ref|XP_002269067.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/277 (42%), Positives = 152/277 (54%), Gaps = 64/277 (23%)

Query: 35  GSFSTVYTGVLAPGDK-TNIGVKKLDKVVH--------------VAHHKNLVCLLGYHIE 79
           G+F TVY GVL+     T + VKKLDK+V               + HHKNLV L+G+  E
Sbjct: 527 GAFGTVYKGVLSSSSSGTQVAVKKLDKLVQEGEREFKTEVRTIAMTHHKNLVRLIGFCDE 586

Query: 80  QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALACRI- 128
              +LLVY+FM N +++S L+    P W+ R Q              +C  T+ + C I 
Sbjct: 587 GPHKLLVYEFMCNGTLASFLFGSSAPDWKIRTQMAFGVARGLMYLHEEC-STQIIHCDIK 645

Query: 129 ----LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
               LL D FT   SD GLAKLLM +QT+TLT +R TKGY+ PEWFR+ P+T KVDVYS+
Sbjct: 646 PQNVLLDDSFTARISDFGLAKLLMSDQTRTLTAIRGTKGYVAPEWFRSKPITAKVDVYSY 705

Query: 185 GVMLLEIISCR-CVERQG--------------------------------SDPKTLEKPV 211
           GVMLLEIISCR C++ Q                                 +D + LEK V
Sbjct: 706 GVMLLEIISCRKCIDFQTENEEEAILTDWAYDCYRGHRLDKLVENDDDARNDMRRLEKLV 765

Query: 212 MIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSF 248
           M+AI  ++E P LRPS+R V  ML+ ++EVP PPC F
Sbjct: 766 MVAIWCIQEDPSLRPSMRNVTQMLEGVVEVPMPPCPF 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120872|ref|XP_002330847.1| predicted protein [Populus trichocarpa] gi|222872669|gb|EEF09800.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/280 (40%), Positives = 146/280 (52%), Gaps = 64/280 (22%)

Query: 35  GSFSTVYTGVLAPGDKTN-IGVKKLDKVVHVA--------------HHKNLVCLLGYHIE 79
           GSF TVY G+L      N + VKKL+++V                 HHKNLV LLG+  E
Sbjct: 424 GSFGTVYKGLLTSQSSRNYVAVKKLERMVQEGEKEFKTEASAIAKTHHKNLVRLLGFCDE 483

Query: 80  QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALAC--- 126
              RLLVY+FM N +++  L+   RP W +R+Q              +C  T+ + C   
Sbjct: 484 GPNRLLVYEFMSNGTLAGFLFGISRPDWNKRIQMAFGIARALTYLHEEC-STQIIHCDIK 542

Query: 127 --RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
              ILL   FT   SD GLAKLLM  QT+T T +R T+GY+ PEWFRNMP+T KVDVYS+
Sbjct: 543 PQNILLDGTFTARISDFGLAKLLMNEQTRTHTAIRGTRGYVAPEWFRNMPITAKVDVYSY 602

Query: 185 GVMLLEIISCR---------------------------------CVERQGSDPKTLEKPV 211
           G+MLLEII CR                                   E   +D KTLE  V
Sbjct: 603 GIMLLEIICCRKSLDMENEKEEEIILADWAHDCYKGGKLDELVKADEEAKNDMKTLETLV 662

Query: 212 MIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFA 251
           M++I  ++E P LRPS+R V  ML+ I++V +PPC   F+
Sbjct: 663 MVSIWCIQEDPSLRPSMRTVTQMLEGIVQVSAPPCPSPFS 702

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073224|ref|XP_002304031.1| predicted protein [Populus trichocarpa] gi|222841463|gb|EEE79010.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 158/307 (51%), Gaps = 68/307 (22%)

Query: 12  PSQYENRVFGSFSHI----YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA- 65
           P  Y N  + ++  +       K   G G F  VY G +  G    + VKKLDKVV    
Sbjct: 387 PKGYTNLRYFTYKELAEATNDFKDEVGRGGFGVVYKGTIQAGSTRVVAVKKLDKVVQDGE 446

Query: 66  -------------HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQ 112
                        HHKNLV LLG+  E + RLLVY+F+ N ++++ L+ C +P W+QR Q
Sbjct: 447 KEFKTEVQVIGQTHHKNLVRLLGFCDEGQNRLLVYEFLSNGTLANFLFGCSKPNWKQRTQ 506

Query: 113 DCI----------RDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                         +C  T+ + C      ILL +Y+    SD GLAKLL+++Q++T T 
Sbjct: 507 IAFGIARGLLYLHEEC-GTQIIHCDIKPQNILLDNYYNARISDFGLAKLLVMDQSKTQTA 565

Query: 158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR--------CVER---------- 199
           +R TKGY+ PEWFRN P+TVKVDVYSFGVMLLEII CR         VE           
Sbjct: 566 IRGTKGYVAPEWFRNRPITVKVDVYSFGVMLLEIICCRRNVDLEIGEVENPVLTDWAYDC 625

Query: 200 --QGS-------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
              GS             D  TLE+ + + I  ++E P LRP++R V  ML+ ++EVP+ 
Sbjct: 626 YMDGSLDVLIGDDTEAKNDISTLERLLKVGIWCIQEDPSLRPTMRKVTQMLEGVVEVPAA 685

Query: 245 PCSFAFA 251
           P  F ++
Sbjct: 686 PNPFPYS 692

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143661|ref|XP_002336066.1| predicted protein [Populus trichocarpa] gi|222869874|gb|EEF07005.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 149/279 (53%), Gaps = 63/279 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA--------------HHKNLVCLLGYHIEQ 80
           G F  VY G +  G    + VKKLDKVV                 HHKNLV LLG+  E 
Sbjct: 411 GGFGVVYKGTIQAGSTRVVAVKKLDKVVQDGEKEFKTEVQVIGQTHHKNLVRLLGFCDEG 470

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALAC---- 126
           + RLLVY+F+ N ++++ L+ C +P W+QR Q              +C  T+ + C    
Sbjct: 471 QNRLLVYEFLSNGTLANFLFGCSKPNWKQRTQIAFGIARGLLYLHEEC-GTQIIHCDIKP 529

Query: 127 -RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
             ILL +Y+    SD GLAKLL+++Q++T T +R TKGY+ PEWFRN P+TVKVDVYSFG
Sbjct: 530 QNILLDNYYNARISDFGLAKLLVMDQSKTQTAIRGTKGYVAPEWFRNRPITVKVDVYSFG 589

Query: 186 VMLLEIISCR--------CVER------------QGS-------------DPKTLEKPVM 212
           VMLLEII CR         VE              GS             D  TLE+ + 
Sbjct: 590 VMLLEIICCRRNVDLEIGEVENPVLTDWAYDCYMDGSLDVLIGDDTEAKNDISTLERLLK 649

Query: 213 IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFA 251
           + I  ++E P LRP++R V  ML+ ++EVP+ P  F ++
Sbjct: 650 VGIWCIQEDPSLRPTMRKVTQMLEGVVEVPAAPNPFPYS 688

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487480|ref|XP_002268890.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/279 (41%), Positives = 145/279 (51%), Gaps = 63/279 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA--------------HHKNLVCLLGYHIEQ 80
           G+F TVY GVLA      + VKKLDKVV                 HH+NLV LLGY  + 
Sbjct: 513 GAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGRTHHRNLVSLLGYCDQG 572

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALAC---- 126
             RLLVY+ M+N S++  L+    P W QR+Q              +C  T  + C    
Sbjct: 573 VHRLLVYEHMNNGSLADFLFGISTPEWSQRLQIAFGIAKGLMYLHEEC-STPIIHCDIKP 631

Query: 127 -RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
             ILL +Y T   SD GLAKLLM + T+TLT +R TKGY+ PEWFR+ P+T KVDVYS+G
Sbjct: 632 ENILLDEYLTPRISDFGLAKLLMRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYG 691

Query: 186 VMLLEIISCR---------------------CV------------ERQGSDPKTLEKPVM 212
           VMLLEIISCR                     C             +  G D   LE+ VM
Sbjct: 692 VMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVM 751

Query: 213 IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFA 251
           +AI  ++E P LRPS+ +V LMLQ ++EV  P   F F+
Sbjct: 752 VAIWCIQEDPSLRPSMGMVILMLQGVVEVAVPRSPFPFS 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555135|ref|XP_003545892.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 151/276 (54%), Gaps = 65/276 (23%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE 79
           G+F  VY GV+  G  T + VK+L+                 + + HHKNLV +LG+   
Sbjct: 532 GAFGIVYEGVINMGSDTRVAVKRLNTFLLEDVHKEFKNELNAIGLTHHKNLVRILGFCET 591

Query: 80  QECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCI----------RDCWRTRALAC-- 126
           +E RLLVY++M N +++SLL+  L +P+W+ R+Q  I           +C  T+ + C  
Sbjct: 592 EEKRLLVYEYMSNGTLASLLFNILEKPSWELRLQIAIGVARGLLYLHEEC-STQIIHCDI 650

Query: 127 ---RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYS 183
               ILL DY+    SD GLAKLL +NQ++T T +R TKGY+  EWF+NMP+T KVDVYS
Sbjct: 651 KPQNILLDDYYNARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYS 710

Query: 184 FGVMLLEIISCR-CVERQGSDP--------------------------------KTLEKP 210
           +GV+LLEI+SCR  VE +  D                                 K LEK 
Sbjct: 711 YGVLLLEIVSCRKSVEFETEDKEKAILAEWAYDCYTERTLHALVEGDKEALDDMKNLEKL 770

Query: 211 VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC 246
           VMIA+  V+E P LRP++R V  ML+ ++EV  PPC
Sbjct: 771 VMIALWCVQEDPDLRPTMRNVTQMLEGVVEVKVPPC 806

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503089|ref|XP_003520344.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 151/274 (55%), Gaps = 63/274 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE 79
           G+F  VY GV+  G  T + VK+L+                V+ + HHKNLV LLG+   
Sbjct: 523 GAFGIVYEGVINMGSLTLVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRLLGFCET 582

Query: 80  QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------RDCWRTRALAC--- 126
           Q+ RLLVY++M N +++SL++   +P+W+ R+Q              +C  T+ + C   
Sbjct: 583 QDERLLVYEYMSNGTLASLVFNVEKPSWKLRLQIATGVARGLLYLHEEC-STQIIHCDIK 641

Query: 127 --RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
              ILL DY+    SD GLAK+L +NQ++T T +R TKGY+  EWF+NMP+T KVDVYS+
Sbjct: 642 PQNILLDDYYNARISDFGLAKILNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSY 701

Query: 185 GVMLLEIISCR-CVERQG-------------------------------SDPKTLEKPVM 212
           GV+LLEI+SCR  VE +                                 D KTLEK VM
Sbjct: 702 GVLLLEIVSCRKSVEFEADEEKAILTEWAFDCYTEGVLHDLVENDKEALDDMKTLEKLVM 761

Query: 213 IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC 246
           IA+  V+E P LRP++R V  ML+ ++EV  PPC
Sbjct: 762 IALWCVQEDPGLRPTMRNVTQMLEGVVEVQIPPC 795

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528738|ref|XP_003532956.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/283 (38%), Positives = 154/283 (54%), Gaps = 65/283 (22%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE 79
           G+F  VY GV+     T + VK+L+                 + + HHKNLV LLG+   
Sbjct: 533 GAFGIVYEGVINMCSDTRVAVKRLNTFLMEDVHKEFKNELNAIGLTHHKNLVRLLGFCET 592

Query: 80  QECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCI----------RDCWRTRALAC-- 126
           +E RLLVY++M N +++SLL+  + +P+W+ R+Q  I           +C  T+ + C  
Sbjct: 593 EEKRLLVYEYMSNGTLASLLFNIVEKPSWKLRLQIAIGIARGLLYLHEEC-STQIIHCDI 651

Query: 127 ---RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYS 183
               ILL DY+    SD GLAKLL +NQ++T T +R TKGY+  EWF+NMP+T KVDVYS
Sbjct: 652 KPQNILLDDYYNARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYS 711

Query: 184 FGVMLLEIISCR-CVERQGSDP--------------------------------KTLEKP 210
           +GV+LLEI+SCR  VE +  D                                 KT EK 
Sbjct: 712 YGVLLLEIVSCRKSVEFEAEDEEKAILAEWAYDCYIEGTLHALVEGDKEALDDMKTFEKL 771

Query: 211 VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAFAIR 253
           VMIA+  V+E P LRP++R V  ML+ ++EV  PPC   F+++
Sbjct: 772 VMIALWCVQEDPSLRPTMRNVTQMLEGVVEVKMPPCPSQFSVQ 814

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2182603	872	AT5G35370 [Arabidopsis thalian	0.522	0.159	0.364	3.2e-23
TAIR|locus:2026155	829	AT1G34300 [Arabidopsis thalian	0.308	0.098	0.430	6.2e-23
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.293	0.095	0.481	4.4e-17
TAIR|locus:2121706	690	CRK21 "cysteine-rich RLK (RECE	0.255	0.098	0.463	5.8e-17
TAIR|locus:2141762	665	CRK26 "cysteine-rich RLK (RECE	0.349	0.139	0.345	1.2e-16
TAIR|locus:2059103	828	AT2G19130 [Arabidopsis thalian	0.398	0.128	0.385	4e-16
TAIR|locus:2019180	399	AT1G74490 [Arabidopsis thalian	0.582	0.388	0.377	8.4e-16
TAIR|locus:2121651	676	CRK8 "cysteine-rich RLK (RECEP	0.372	0.146	0.336	2e-15
TAIR|locus:2027559	492	AT1G56720 [Arabidopsis thalian	0.255	0.138	0.455	2.4e-15
UNIPROTKB|Q40234	321	Pto "Pto disease resistance pr	0.484	0.401	0.358	2.7e-15

TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 3.2e-23, Sum P(3) = 3.2e-23
 Identities = 58/159 (36%), Positives = 84/159 (52%)

Query:    67 HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT--WQQRMQDCI--------- 115
             H NLV L G+       LLVY++M++ S+   L+    P   WQ+R    +         
Sbjct:   568 HTNLVKLRGFCARGRQLLLVYEYMNHGSLEKTLFSGNGPVLEWQERFDIALGTARGLAYL 627

Query:   116 -RDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW 169
                C + + + C      ILLHD+F  + SD GL+KLL   ++   T MR T+GYL PEW
Sbjct:   628 HSGCDQ-KIIHCDVKPENILLHDHFQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPEW 686

Query:   170 FRNMPVTVKVDVYSFGVMLLEIISCR--CVERQGSDPKT 206
               N  ++ K DVYS+G++LLE++S R  C  R  S+  T
Sbjct:   687 ITNAAISEKADVYSYGMVLLELVSGRKNCSFRSRSNSVT 725

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2026155 AT1G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 6.2e-23, Sum P(3) = 6.2e-23
 Identities = 37/86 (43%), Positives = 53/86 (61%)

Query:   109 QRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPP 167
             +  +DCI  C         IL+ D F  + SD GLAKLL     +  ++ +R T+GYL P
Sbjct:   598 EECRDCIVHC---DIKPENILVDDNFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAP 654

Query:   168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
             EW  N+P+T K DVYS+G++LLE++S
Sbjct:   655 EWLANLPITSKSDVYSYGMVLLELVS 680

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0048544 "recognition of pollen" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query:   128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
             ILL D F  + SD GLAKL+   Q+   T MR T+GYL PEW  N  ++ K DVYS+G++
Sbjct:   624 ILLDDNFNAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMV 683

Query:   188 LLEIISCRCVERQGSDP-KTLEK 209
             LLE+I      R+  DP +T EK
Sbjct:   684 LLELIG----GRKNYDPSETSEK 702

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

TAIR|locus:2121706 CRK21 "cysteine-rich RLK (RECEPTOR-like protein kinase) 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 5.8e-17, Sum P(3) = 5.8e-17
 Identities = 32/69 (46%), Positives = 43/69 (62%)

Query:   125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTG-MRETKGYLPPEWFRNMPVTVKVDVYS 183
             A  ILL      + +D GLA+   +NQT+  TG +  T GY+PPE+  N   + K DVYS
Sbjct:   491 ASNILLDAEMNPKIADFGLARNFRVNQTEANTGRVVGTFGYMPPEYVANGQFSTKSDVYS 550

Query:   184 FGVMLLEII 192
             FGV++LEII
Sbjct:   551 FGVLILEII 559

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
 Identities = 38/110 (34%), Positives = 56/110 (50%)

Query:     7 NLEADPSQYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----- 60
             N+  D  +++  V    +  +SL+   G G F  VY GVL+ G K  I VK+L K     
Sbjct:   324 NISTDSMKFDFSVLQDATSHFSLENKLGEGGFGAVYKGVLSDGQK--IAVKRLSKNAQQG 381

Query:    61 ---------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYE 101
                      +V    H+NLV LLGY IE   RLLVY+F+ + S+   +++
Sbjct:   382 ETEFKNEFLLVAKLQHRNLVKLLGYSIEGTERLLVYEFLPHTSLDKFIFD 431

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
 Identities = 42/109 (38%), Positives = 58/109 (53%)

Query:   112 QDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR 171
             +DCI  C         ILL   F  + +D GLAKL+  + ++ LT MR T+GYL PEW  
Sbjct:   612 RDCIIHC---DIKPENILLDSQFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWIS 668

Query:   172 NMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE 220
              + +T K DVYS+G+ML E++S R    Q  + K    P   A    K+
Sbjct:   669 GVAITAKADVYSYGMMLFELVSGRRNTEQSENEKVRFFPSWAATILTKD 717

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

TAIR|locus:2019180 AT1G74490 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 8.4e-16, P = 8.4e-16
 Identities = 65/172 (37%), Positives = 90/172 (52%)

Query:    66 HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP--TWQQRMQDCI---RD-CW 119
             HH NLV L+GY +E E RLLVY+ + N S+ + L+E      +W  RM+  I   R  C+
Sbjct:   147 HHPNLVKLIGYSLENEHRLLVYEHLPNGSLENHLFERSSSVLSWSLRMKVAIGAARGLCF 206

Query:   120 RTRA---------LACRILLHDYFTVETSDLGLAKL-LMINQTQTLTGMRETKGYLPPEW 169
                A          A  ILL   F  + SD GLAK     N++   T +  T+GY  PE+
Sbjct:   207 LHEANDQVIYRDFKAANILLDSGFNAKLSDFGLAKEGPKDNRSHVTTEVMGTEGYAAPEY 266

Query:   170 FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEK 221
                  +T K DVYSFGV+LLEI+S R V  + S  +  E  V  A  ++++K
Sbjct:   267 LATGHLTTKCDVYSFGVVLLEILSGRRVIDK-SKSREEENLVDWATPYLRDK 317

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2121651 CRK8 "cysteine-rich RLK (RECEPTOR-like protein kinase) 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
 Identities = 40/119 (33%), Positives = 62/119 (52%)

Query:    10 ADPSQYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------- 60
             AD  Q + R   + ++ ++     G G F  VY G  + G +  + VK+L K        
Sbjct:   336 ADSLQLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKE--VAVKRLSKNSRQGEAE 393

Query:    61 ----VVHVA--HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---WQQR 110
                 VV VA   H+NLV LLG+ ++ E R+LVY++M N+S+  LL++  + T   W QR
Sbjct:   394 FKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQTQLDWMQR 452

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2027559 AT1G56720 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
 Identities = 31/68 (45%), Positives = 43/68 (63%)

Query:   128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
             IL++D F  + SD GLAKLL   ++   T +  T GY+ PE+  +  +  K DVYSFGV+
Sbjct:   311 ILINDEFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVV 370

Query:   188 LLEIISCR 195
             LLE I+ R
Sbjct:   371 LLEAITGR 378

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

UNIPROTKB|Q40234 Pto "Pto disease resistance protein" [Solanum pimpinellifolium (taxid:4084)]

 Score = 195 (73.7 bits), Expect = 2.7e-15, P = 2.7e-15
 Identities = 52/145 (35%), Positives = 80/145 (55%)

Query:    67 HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT----WQQRMQDCIRDC---- 118
             H +LV L+G+  E+   +L+YK+M N ++   LY    PT    W+QR++ CI       
Sbjct:    94 HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153

Query:   119 -WRTRALACR------ILLHDYFTVETSDLGLAKL-LMINQTQTLTGMRETKGYLPPEWF 170
                TRA+  R      ILL + F  + +D G++K    ++QT   T ++ T GY+ PE+F
Sbjct:   154 YLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYF 213

Query:   171 RNMPVTVKVDVYSFGVMLLEIISCR 195
                 +T K DVYSFGV+L E++  R
Sbjct:   214 IKGRLTEKSDVYSFGVVLFEVLCAR 238

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.10930002 hypothetical protein (417 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-16
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-14
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-13
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-12
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-11
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-08
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	8e-08
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-07
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	5e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-06
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-06
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	5e-06
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	6e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	8e-06
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-05
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	3e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	3e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	5e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	6e-05
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	9e-05
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	9e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-04
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-04
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-04
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	4e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	5e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	6e-04
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	6e-04
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	7e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	8e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.001
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	0.001
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	0.001
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	0.001
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	0.002
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	0.002
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	0.003
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	0.003
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.003
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	0.004
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.004
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 35/194 (18%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA---------------HHKNLVCLLGYHIE 79
           G F TVY           + +K + K    +               +H N+V L G   +
Sbjct: 4   GGFGTVYLARD-KKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFED 62

Query: 80  QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC------------- 126
           +    LV ++    S+  LL E      +  +   +        L               
Sbjct: 63  ENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQI--LEGLEYLHSNGIIHRDLKP 120

Query: 127 -RILLH-DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE-WFRNMPVTVKVDVYS 183
             ILL  D   V+ +D GL+KLL  +    L  +  T  Y+ PE        + K D++S
Sbjct: 121 ENILLDSDNGKVKLADFGLSKLL-TSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWS 179

Query: 184 FGVMLLEIISCRCV 197
            GV+L E+   + +
Sbjct: 180 LGVILYELPELKDL 193

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 70.2 bits (173), Expect = 2e-14
 Identities = 51/200 (25%), Positives = 79/200 (39%), Gaps = 51/200 (25%)

Query: 35  GSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGY 76
           G+F  VY G L     G +T + VK L                 ++    H N+V LLG 
Sbjct: 10  GAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGV 69

Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRP-TWQQRMQ---------------DCI-RDCW 119
             + E   +V ++M    +   L +     T +  +Q               + + RD  
Sbjct: 70  CTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHRD-- 127

Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNM 173
               LA R  L+ +   V+ SD GL++ +  +      G     G LP     PE  ++ 
Sbjct: 128 ----LAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRG----GGKLPIKWMAPESLKDG 179

Query: 174 PVTVKVDVYSFGVMLLEIIS 193
             T K DV+SFGV+L EI +
Sbjct: 180 KFTSKSDVWSFGVLLWEIFT 199

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 57/251 (22%), Positives = 95/251 (37%), Gaps = 55/251 (21%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHK 68
           +L K  G G+F  VY G L       +  + VK L                +++    H 
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHP 61

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLL--YECLRPTWQQRMQDCI----------- 115
           N+V LLG   E+E  ++V ++M    +   L        +    +   +           
Sbjct: 62  NIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES 121

Query: 116 -----RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW 169
                RD      LA R  L+ +   V+ SD GL++ L  +    + G +    ++ PE 
Sbjct: 122 KNFIHRD------LAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPES 175

Query: 170 FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE----KPPLR 225
            +    T K DV+SFGV+L EI +       G +P          ++++K+      P  
Sbjct: 176 LKEGKFTSKSDVWSFGVLLWEIFT------LGEEPY-PGMSNAEVLEYLKKGYRLPKPPN 228

Query: 226 PSLRIVALMLQ 236
               +  LMLQ
Sbjct: 229 CPPELYKLMLQ 239

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 66.8 bits (164), Expect = 5e-13
 Identities = 57/243 (23%), Positives = 90/243 (37%), Gaps = 55/243 (22%)

Query: 35  GSFSTVYTGVLAPGDKTN---IGVKKLD---------------KVVHVAHHKNLVCLLGY 76
           G+F  VY G L          + VK L                +++    H N+V LLG 
Sbjct: 10  GAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGV 69

Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRP--TWQQRMQDCI----------------RDC 118
             E+E   +V ++M    + S L +  RP  +    +   +                RD 
Sbjct: 70  CTEEEPLYIVMEYMEGGDLLSYLRK-NRPKLSLSDLLSFALQIARGMEYLESKNFIHRD- 127

Query: 119 WRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
                LA R  L+ +   V+ SD GL++ L  +      G +    ++ PE  +    T 
Sbjct: 128 -----LAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTS 182

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE----KPPLRPSLRIVAL 233
           K DV+SFGV+L EI +       G  P          ++++K       P      +  L
Sbjct: 183 KSDVWSFGVLLWEIFT------LGEQPY-PGMSNEEVLEYLKNGYRLPQPPNCPPELYDL 235

Query: 234 MLQ 236
           MLQ
Sbjct: 236 MLQ 238

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 42/202 (20%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHHKNL 70
           Y + +  G GSF  VY        K  + +K + K               ++    H N+
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKL-VAIKVIKKKKIKKDRERILREIKILKKLKHPNI 59

Query: 71  VCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQ-DCIRDCWR--TRALAC- 126
           V L     +++   LV ++     +  LL +      + R+  D  R   R    AL   
Sbjct: 60  VRLYDVFEDEDKLYLVMEYCEGGDLFDLLKK------RGRLSEDEARFYLRQILSALEYL 113

Query: 127 -------R------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM 173
                  R      ILL +   V+ +D GLA+ L  +  + LT    T  Y+ PE     
Sbjct: 114 HSKGIVHRDLKPENILLDEDGHVKLADFGLARQL--DPGEKLTTFVGTPEYMAPEVLLGK 171

Query: 174 PVTVKVDVYSFGVMLLEIISCR 195
                VD++S GV+L E+++ +
Sbjct: 172 GYGKAVDIWSLGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 48/202 (23%)

Query: 35  GSFSTVYTGVL--APGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYH 77
           G+F  VY G L    G  T + VK L                +V+    H N+V LLG  
Sbjct: 6   GAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVC 65

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---------------- 121
            E+E   LV ++M    +   L +  RP +    +  +                      
Sbjct: 66  TEEEPLYLVLEYMEGGDLLDYLRKS-RPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK 124

Query: 122 ----RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFR 171
               R LA R  L+ +   V+ SD GL++ +  +          T G LP     PE  +
Sbjct: 125 KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKK----TGGKLPIRWMAPESLK 180

Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
           +   T K DV+SFGV+L EI +
Sbjct: 181 DGIFTSKSDVWSFGVLLWEIFT 202

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 53/192 (27%), Positives = 74/192 (38%), Gaps = 47/192 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAHHKNLVCLLGYHIEQECR 83
           G F  V  G    G K  +   K D            V+    H NLV LLG  ++    
Sbjct: 17  GEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPL 75

Query: 84  LLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDC----------WRTRALACR 127
            +V ++M   S    L + LR       T  Q++   +  C          +  R LA R
Sbjct: 76  YIVTEYMAKGS----LVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAAR 131

Query: 128 -ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTVKVDV 181
            +L+ +    + SD GLAK      +Q         G LP     PE  R    + K DV
Sbjct: 132 NVLVSEDLVAKVSDFGLAK----EASQGQDS-----GKLPVKWTAPEALREKKFSTKSDV 182

Query: 182 YSFGVMLLEIIS 193
           +SFG++L EI S
Sbjct: 183 WSFGILLWEIYS 194

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 41/201 (20%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y L +  G GSF TVY        K  + VK L K                ++    H N
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKI-VAVKILKKRSEKSKKDQTARREIRILRRLSHPN 59

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT--RALA-C 126
           +V L+    +++   LV ++     +   L      +  +      +       R L   
Sbjct: 60  IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDE-----AKKIALQILRGLEYL 114

Query: 127 -------R------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW-FRN 172
                  R      ILL +   V+ +D GLAK L+ +   +LT    T  Y+ PE     
Sbjct: 115 HSNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSS-SSLTTFVGTPWYMAPEVLLGG 173

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
                KVDV+S GV+L E+++
Sbjct: 174 NGYGPKVDVWSLGVILYELLT 194

Length = 260

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYE---CLRPTWQQRMQDCI- 115
           KV+    H NLV L G   +Q    +V ++M N  + + L E    L   W   M  C  
Sbjct: 51  KVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDM--CSD 108

Query: 116 ---------RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                     + +  R LA R  L+ +   V+ SD GLA+ ++ +Q  +  G +    + 
Sbjct: 109 VCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWA 168

Query: 166 PPEWFRNMPVTVKVDVYSFGVMLLEIISC 194
           PPE F     + K DV+SFGV++ E+ S 
Sbjct: 169 PPEVFDYSRFSSKSDVWSFGVLMWEVFSE 197

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    +V ++M N  + + L E   R    Q ++ C   C
Sbjct: 51  KVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVC 110

Query: 119 ----------WRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                     +  R LA R  L+ D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 111 EGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170

Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K DV++FGV++ E+ S
Sbjct: 171 EVLLYSKFSSKSDVWAFGVLMWEVYS 196

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 27/196 (13%)

Query: 34  GGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQ 80
           GG +  VY GV      T + VK L +             V+    H NLV LLG    +
Sbjct: 16  GGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE 74

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTW------------QQRMQDCIRDCWRTRALACR- 127
               ++ +FM   ++   L EC R                  M+   +  +  R LA R 
Sbjct: 75  PPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARN 134

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
            L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++FGV+
Sbjct: 135 CLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVL 194

Query: 188 LLEIISCRCVERQGSD 203
           L EI +       G D
Sbjct: 195 LWEIATYGMSPYPGID 210

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 21/133 (15%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+      + +D GLA+++  N+     G +    +  PE       T+K DV+SF
Sbjct: 130 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 189

Query: 185 GVMLLEIIS--------------CRCVERQGSDPKTLEKP---VMIAIQFVKEKPPLRPS 227
           G++L+EI++               R +ER    P+    P     I ++  K +P  RP+
Sbjct: 190 GILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPT 249

Query: 228 LRIVALMLQSILE 240
                  +QS+L+
Sbjct: 250 FE----YIQSVLD 258

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 47/226 (20%), Positives = 77/226 (34%), Gaps = 52/226 (23%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVV------------------HVAHHKNLVCLLGY 76
           GSF  VY       D+  + +K L K +                   + H  N+V L  +
Sbjct: 11  GSFGEVYLAR----DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDF 66

Query: 77  HIEQECRLLVYKFMHNRSISSL---------LYECLRPTWQQRMQDCIRDCWRTRAL--- 124
             ++    LV +++   S+  L         L E        ++   +        +   
Sbjct: 67  FQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRD 126

Query: 125 --ACRILL-HDYFTVETSDLGLAKLLMINQTQTLTGMRE-----TKGYLPPEWFRNM--- 173
                ILL  D   V+  D GLAKLL    + +           T GY+ PE    +   
Sbjct: 127 IKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLA 186

Query: 174 PVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVK 219
             +   D++S G+ L E+++       G  P   EK      Q +K
Sbjct: 187 YASSSSDIWSLGITLYELLT-------GLPPFEGEKNSSATSQTLK 225

Length = 384

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 48/211 (22%)

Query: 28  SLKKPCG-GSFSTVYTGVLA--PGDKTNIGVK------------KLDKVVHVA-----HH 67
           +L +  G G+F  VY G+     GD   + V             + D ++        +H
Sbjct: 9   TLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNH 68

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQ----RMQDCIRDCWRTRA 123
           +N+V L+G   E+  R ++ + M    + S L E  RP  ++     M+D +  C R  A
Sbjct: 69  QNIVRLIGVSFERLPRFILLELMAGGDLKSFLREN-RPRPERPSSLTMKDLLF-CARDVA 126

Query: 124 LACRILLHDYF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETK 162
             C+ L  ++F                     + +D G+A+ +         G  M   K
Sbjct: 127 KGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIK 186

Query: 163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
            ++PPE F +   T K DV+SFGV+L EI S
Sbjct: 187 -WMPPEAFLDGIFTSKTDVWSFGVLLWEIFS 216

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 28/133 (21%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL     V+  DLG++K+L  N  +T  G   T  Y+ PE ++  P + K D++S G +
Sbjct: 134 ILLVANDLVKIGDLGISKVLKKNMAKTQIG---TPHYMAPEVWKGRPYSYKSDIWSLGCL 190

Query: 188 LLEIISCRCVERQGSDPKTLEKPVMIA-------------IQFVKE----KPPLRPSLRI 230
           L E+ +      +    + L   V                  F++     KP LRP+   
Sbjct: 191 LYEMATFA-PPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPN--- 246

Query: 231 VALMLQSILEVPS 243
                  IL  P+
Sbjct: 247 ----CDKILASPA 255

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 27/184 (14%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV-----------KKLDKVVHVAHHKNLVCLLGYHIEQECR 83
           G F  V+ G      K  I              +  +V+    H  LV L G   E+   
Sbjct: 15  GQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPI 74

Query: 84  LLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCWRTRALACR-IL 129
            LV++FM +  +S             +LL  CL     + M          R LA R  L
Sbjct: 75  CLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVC--EGMAYLESSNVIHRDLAARNCL 132

Query: 130 LHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLL 189
           + +   V+ SD G+ + ++ +Q  + TG +    +  PE F     + K DV+SFGV++ 
Sbjct: 133 VGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMW 192

Query: 190 EIIS 193
           E+ S
Sbjct: 193 EVFS 196

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
           R LA R +L+ +    + +D GLA+++  +  +   G +    +  PE       ++K D
Sbjct: 127 RDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSD 186

Query: 181 VYSFGVMLLEIIS 193
           V+SFG++L EI++
Sbjct: 187 VWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL +   V  SDLGLA  L   Q++T  G   T G++ PE  +       VD ++ GV 
Sbjct: 128 VLLDNDGNVRISDLGLAVELKDGQSKT-KGYAGTPGFMAPELLQGEEYDFSVDYFALGVT 186

Query: 188 LLEIISCRC--------VERQGSDPKTLEKPVMIAIQF 217
           L E+I+ R         VE +    + L   V    +F
Sbjct: 187 LYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKF 224

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)

Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLY--------ECLRPTWQ--- 108
           KV+    H  LV L G   +Q+   +V +FM N  + + L         + L    Q   
Sbjct: 51  KVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVC 110

Query: 109 QRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
           + M+   R+ +  R LA R  L+     V+ SD G+ + ++ ++  + +G +    + PP
Sbjct: 111 EGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPP 170

Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E F     + K DV+SFGV++ E+ +
Sbjct: 171 EVFNFSKYSSKSDVWSFGVLMWEVFT 196

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D+  V  SDLGLA  + +   + + G   T GY+ PE  +       VD ++ G  
Sbjct: 126 VLLDDHGNVRISDLGLA--VELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCT 183

Query: 188 LLEIISCRC--------VERQGSDPKTLEKPVMIAIQFVKE 220
           L E+I+ R         VE++    +TLE  V    +F  E
Sbjct: 184 LYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPE 224

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL DY  +  SDLGLA  + I + +T+ G   T GY+ PE  +N   T   D +  G +
Sbjct: 133 ILLDDYGHIRISDLGLA--VEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCL 190

Query: 188 LLEII 192
           + E+I
Sbjct: 191 IYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL D+  +  SDLGLA  + + + QT+ G   T GY+ PE  +N   T   D ++ G +
Sbjct: 133 ILLDDHGHIRISDLGLA--VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCL 190

Query: 188 LLEIIS 193
           L E+I+
Sbjct: 191 LYEMIA 196

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 21/133 (15%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ +    + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 130 AANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 189

Query: 185 GVMLLEIISCRCVERQG-SDPKTLE---------KPVM-------IAIQFVKEKPPLRPS 227
           G++L EI++   +   G ++P+ ++         +P         +     KEKP  RP+
Sbjct: 190 GILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPEERPT 249

Query: 228 LRIVALMLQSILE 240
                  L+S+LE
Sbjct: 250 FE----YLRSVLE 258

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLM--INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           I L     V+  D G++K+L   ++  +T+ G   T  YL PE  +N P   K D++S G
Sbjct: 134 IFLTSNGLVKLGDFGISKVLSSTVDLAKTVVG---TPYYLSPELCQNKPYNYKSDIWSLG 190

Query: 186 VMLLE 190
            +L E
Sbjct: 191 CVLYE 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 41/196 (20%)

Query: 35  GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVA---------------HHKNLVCLLGYH 77
           G F  VY G L   D   I   VK L+++  +                 H N++ LLG  
Sbjct: 6   GHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGIC 65

Query: 78  IEQE-CRLLVYKFM-------------HNRSISSLLYECLRPTWQQRMQDCIRDCWRTRA 123
           +  E   L+V  +M             HN ++  L+   L+    + M+      +  R 
Sbjct: 66  LPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVA--KGMEYLASKKFVHRD 123

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW-----FRNMPVTV 177
           LA R  +L + FTV+ +D GLA+   I   +  +    T   LP +W      +    T 
Sbjct: 124 LAARNCMLDESFTVKVADFGLAR--DIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTT 181

Query: 178 KVDVYSFGVMLLEIIS 193
           K DV+SFGV+L E+++
Sbjct: 182 KSDVWSFGVLLWELMT 197

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 43.1 bits (101), Expect = 6e-05
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 30/142 (21%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R IL+ + +  + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 148 RDLAARNILVGENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVY 200

Query: 176 TVKVDVYSFGVMLLEIISC--------RCVERQGSDPK--TLEKPVM-------IAIQFV 218
           T   DV+S+GV+L EI+S          C E     P+   LEKP+        +  Q  
Sbjct: 201 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCW 260

Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +EKP  RPS   + + L  +LE
Sbjct: 261 REKPYERPSFAQILVSLNRMLE 282

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 20/69 (28%), Positives = 37/69 (53%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  +L+ +    + +D GLA+++  N+     G +    +  PE       T+K DV+SF
Sbjct: 131 AANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 190

Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 191 GILLYEIVT 199

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL DY  +  SDLGLA  + I + +++ G   T GY+ PE   N   T+  D +  G +
Sbjct: 133 ILLDDYGHIRISDLGLA--VKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCL 190

Query: 188 LLEIISCRC--------VERQGSDPKTLEKPVMIAIQFVKE 220
           + E+I  +         V+R+  D + LE   + + +F +E
Sbjct: 191 IYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEE 231

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALA 125
            H N+V     ++  +   +V ++M   S++ ++ +      + ++    R+    + L 
Sbjct: 73  KHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREV--LQGLE 130

Query: 126 C--------------RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR 171
                           ILL    +V+ +D G A  L   +      +  T  ++ PE  +
Sbjct: 131 YLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLT-KEKSKRNSVVGTPYWMAPEVIK 189

Query: 172 NMPVTVKVDVYSFGVMLLEII 192
                 KVD++S G+M +E+ 
Sbjct: 190 RKDYGPKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
           R LA R IL+ +    + +D GLA+L+  ++     G +    +  PE       T+K D
Sbjct: 127 RDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSD 186

Query: 181 VYSFGVMLLEIIS 193
           V+SFG++L EI++
Sbjct: 187 VWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 128 ILLHDYFTVETSDLGLAK-LLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV 186
           ILL     V+  D GL+  L       T+ G   T  ++ PE     P   K D++S G+
Sbjct: 129 ILLTSDGEVKLIDFGLSAQLSDTKARNTMVG---TPYWMAPEVINGKPYDYKADIWSLGI 185

Query: 187 MLLE 190
             +E
Sbjct: 186 TAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 30/142 (21%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R +L+ +    + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 143 RDLAARNVLVGENLASKIADFGLSRGEEVY-------VKKTMGRLPVRWMAIESLNYSVY 195

Query: 176 TVKVDVYSFGVMLLEIIS------C--RCVERQGSDPK--TLEKP-------VMIAIQFV 218
           T K DV+SFGV+L EI+S      C   C E     P+   +EKP         +  Q  
Sbjct: 196 TTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCW 255

Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +++P  RP    +++ L  +LE
Sbjct: 256 RDRPYERPPFAQISVQLSRMLE 277

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPV 175
           R LA R  ++ +  TV+  D G+ +   I +T      +  KG LP     PE  ++   
Sbjct: 143 RDLAARNCMVAEDLTVKIGDFGMTRD--IYETDYYR--KGGKGLLPVRWMAPESLKDGVF 198

Query: 176 TVKVDVYSFGVMLLEIIS 193
           T K DV+SFGV+L E+ +
Sbjct: 199 TTKSDVWSFGVVLWEMAT 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 57/202 (28%)

Query: 35  GSFSTVYTGVLAPGDKTN---IGVKKLDKVVHVAH-----------------HKNLVCLL 74
           GSF +VY  +    DK     + VK ++ +   +                  H N+V   
Sbjct: 11  GSFGSVYLAL----DKDTGELMAVKSVE-LSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 75  GYHIEQE--CRLLVYKFMHNRSISSLL--YECLRPTWQQRMQDCIRDCWR--TRALAC-- 126
           G   ++E     +  +++   S+SSLL  +  L           IR   R     LA   
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEP-------VIRKYTRQILEGLAYLH 118

Query: 127 ------R------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG---YLPPEWFR 171
                 R      IL+     V+ +D G AK   +   +T  G    +G   ++ PE  R
Sbjct: 119 SNGIVHRDIKGANILVDSDGVVKLADFGCAKR--LGDIETGEGTGSVRGTPYWMAPEVIR 176

Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
                   D++S G  ++E+ +
Sbjct: 177 GEEYGRAADIWSLGCTVIEMAT 198

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           +  IL+ D    + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 130 SANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSF 189

Query: 185 GVMLLEIIS--------------CRCVERQGSDPKTLEKPVM---IAIQFVKEKPPLRPS 227
           G++L E+++                 VER    P   + P+    + +Q  K+ P  RP+
Sbjct: 190 GILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPT 249

Query: 228 LRIVALMLQSILE 240
                  LQS LE
Sbjct: 250 FE----YLQSFLE 258

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 38/157 (24%)

Query: 63  HVAHHKNLVCLLG--------YHIEQECR---LLVYKFMHNRSISSLLYE-CLRPTWQ-- 108
           H+ +H+N+V LLG          I + C    LL   F+  +  S L  E  L  ++Q  
Sbjct: 94  HLGNHENIVNLLGACTIGGPILVITEYCCYGDLL--NFLRRKRESFLTLEDLLSFSYQVA 151

Query: 109 QRM-----QDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           + M     ++CI      R LA R +LL     V+  D GLA+ +M +    + G     
Sbjct: 152 KGMAFLASKNCIH-----RDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKG----N 202

Query: 163 GYLPPEW------FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      F  +  T + DV+S+G++L EI S
Sbjct: 203 ARLPVKWMAPESIFNCV-YTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 18/141 (12%)

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLY---ECLRPTWQ---------QRMQD 113
           HHKNLV LLG  +     + V + M   ++ + L      L    Q         + M+ 
Sbjct: 57  HHKNLVRLLGVILHNGLYI-VMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEY 115

Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
                   R LA R IL+ +    + SD GLA++  +    +   ++ T     PE  ++
Sbjct: 116 LESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTA----PEALKH 171

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+S+GV+L E+ S
Sbjct: 172 KKFSSKSDVWSYGVLLWEVFS 192

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC 126
           H N+V L+G    ++   L+++++  +++S +L      +W++R +  I      R L C
Sbjct: 742 HPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVL---RNLSWERRRKIAIGIAKALRFLHC 798

Query: 127 RI---LLHDYFT-----VETSD-----LGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM 173
           R    ++    +     ++  D     L L  LL  +    ++       Y+ PE     
Sbjct: 799 RCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISS-----AYVAPETRETK 853

Query: 174 PVTVKVDVYSFGVMLLEIISCRC 196
            +T K D+Y FG++L+E+++ + 
Sbjct: 854 DITEKSDIYGFGLILIELLTGKS 876

Length = 968

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG-MRETKGYLPPEWFRNMPVTVKV 179
           R LA R ILL +   V+  D GLA+ +  +      G  R    ++ PE   +   T + 
Sbjct: 197 RDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQS 256

Query: 180 DVYSFGVMLLEIIS 193
           DV+SFGV+L EI S
Sbjct: 257 DVWSFGVLLWEIFS 270

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 55/210 (26%)

Query: 35  GSFSTVYTG-VLAPGDK---TNIGVKKLDKVVHVA---------------HHKNLVCLLG 75
           G+F  VY G +  P ++   T++ +K L +                     H N+VCLLG
Sbjct: 16  GAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLG 75

Query: 76  YHIEQECRLLVYKFMHNRSISSLLY---------------ECLRPTWQQR---------- 110
              +++   ++++++ +  +   L                                    
Sbjct: 76  VCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAA 135

Query: 111 -MQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMIN-----QTQTLTGMRETKG 163
            M+      +  R LA R  L+ +  TV+ SD GL++ +        Q+++L  +R    
Sbjct: 136 GMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVR---- 191

Query: 164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           ++PPE       T + D++SFGV+L EI S
Sbjct: 192 WMPPEAILYGKFTTESDIWSFGVVLWEIFS 221

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL D   +  SDLGLA  + I + +T+ G   T GY+ PE   N   T   D +  G +
Sbjct: 133 ILLDDRGHIRISDLGLA--VQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCL 190

Query: 188 LLEIISCRCVERQGSDP 204
           + E+I       QG  P
Sbjct: 191 IYEMI-------QGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D    + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 130 AANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSF 189

Query: 185 GVMLLEIIS 193
           G++L E+++
Sbjct: 190 GILLTELVT 198

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 140 DLGLAKLL-----MINQTQTLTG-MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           D G+  LL         T T T  +  T  Y  PE  R  PVT   D+Y++G++ LE ++
Sbjct: 125 DFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLT 184

Query: 194 CRCVERQGSDPKTLEK---PVMIAIQFVKEKPPLRPSLR 229
            + V +  S  + L +   PV +++       PL   LR
Sbjct: 185 GQRVVQGASVAEILYQQLSPVDVSLPPWIAGHPLGQVLR 223

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 21/69 (30%), Positives = 36/69 (52%)

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ +    + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 130 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSF 189

Query: 185 GVMLLEIIS 193
           G++L E+ +
Sbjct: 190 GILLTELTT 198

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 15/116 (12%)

Query: 128 ILLHDYFTVETSDLGLAKLLM--INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           +L HD   V+ SD G    +   + + ++L G   T  ++ PE    +P   +VD++S G
Sbjct: 148 LLTHDG-RVKLSDFGFCAQVSKEVPRRKSLVG---TPYWMAPELISRLPYGPEVDIWSLG 203

Query: 186 VMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEK-PPLRPSLRIVALMLQSILE 240
           +M++E++          +P    +P + A++ +++  PP   +L  V+  L+  L+
Sbjct: 204 IMVIEMVD--------GEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLD 251

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 30/142 (21%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R IL+ + +  + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 136 RDLAARNILVGENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVY 188

Query: 176 TVKVDVYSFGVMLLEIISC--------RCVERQGSDPK--TLEKP-------VMIAIQFV 218
           T   DV+S+GV+L EI+S          C E     P+   LEKP         +  Q  
Sbjct: 189 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCW 248

Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +EKP  RPS   + + L  +LE
Sbjct: 249 REKPYERPSFAQILVSLNRMLE 270

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 18/141 (12%)

Query: 67  HKNLVCLLGYHIEQECRL-LVYKFM---------HNRSISSLLYECL---RPTWQQRMQD 113
           H NLV LLG  +E++  L +V ++M          +R  S L  +CL        + M+ 
Sbjct: 58  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 117

Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
              + +  R LA R +L+ +    + SD GL K    + TQ  TG    K +  PE  R 
Sbjct: 118 LEANNFVHRDLAARNVLVSEDNVAKVSDFGLTK--EASSTQD-TGKLPVK-WTAPEALRE 173

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+SFG++L EI S
Sbjct: 174 KKFSTKSDVWSFGILLWEIYS 194

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL     V+  D G++  L+ +   T TG   T  Y+ PE  +  P ++  DV+S G+ 
Sbjct: 136 ILLTRKGQVKLCDFGVSGELVNSLAGTFTG---TSFYMAPERIQGKPYSITSDVWSLGLT 192

Query: 188 LLEIISCR 195
           LLE+   R
Sbjct: 193 LLEVAQNR 200

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D      SDLGLA  + +   +T+T    T GY+ PE  +  P +  VD ++ G  
Sbjct: 126 VLLDDQGNCRLSDLGLA--VELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCS 183

Query: 188 LLEIISCR 195
           + E+++ R
Sbjct: 184 IYEMVAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQ--TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           + L  Y  V+  DLG+AKLL  N     T+ G   T  YL PE   + P   K DV++ G
Sbjct: 132 LFLDAYDNVKIGDLGVAKLLSDNTNFANTIVG---TPYYLSPELCEDKPYNEKSDVWALG 188

Query: 186 VMLLE 190
           V+L E
Sbjct: 189 VVLYE 193

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTL-TGMRETKGYLPPEWFRNMPVTVKV 179
           R LA R +L+     V+ +D GLAKLL +++ +    G +    ++  E   +   T K 
Sbjct: 133 RDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKS 192

Query: 180 DVYSFGVMLLEIIS 193
           DV+S+GV + E+++
Sbjct: 193 DVWSYGVTVWELMT 206

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 34/206 (16%)

Query: 61  VVHVAHHKNLVCLLGYH--IEQECRLLVY----KFMHNRSISSLLYECLRPTWQQRMQDC 114
           VV  A H NL   L       +           + +  + + S  Y+  R       + C
Sbjct: 94  VVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKC 153

Query: 115 IRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW---- 169
           I      R LA R +L+ +   ++ +D GLA+ +        T    T G LP +W    
Sbjct: 154 IH-----RDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKT----TNGRLPVKWMAPE 204

Query: 170 --FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE----KPP 223
             F  +  T + DV+SFGV+L EI +       GS    +  PV    + +KE    + P
Sbjct: 205 ALFDRV-YTHQSDVWSFGVLLWEIFTL-----GGSPYPGI--PVEELFKLLKEGYRMEKP 256

Query: 224 LRPSLRIVALMLQSILEVPSPPCSFA 249
              +  +  LM     EVPS   +F 
Sbjct: 257 QNCTQELYHLMRDCWHEVPSQRPTFK 282

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 64/267 (23%), Positives = 100/267 (37%), Gaps = 65/267 (24%)

Query: 35  GSFSTVYTG----VLAPGD-KTNIGVKKLDK---------VVHVAH------HKNLVCLL 74
           G+F  VY G    +L PG     + VK L K          +  AH      H N+V LL
Sbjct: 6   GAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLL 65

Query: 75  GYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQ-------QRMQDCIRDC--------- 118
           G  +  E + ++ + M    + S L +     +        + +  C+            
Sbjct: 66  GVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM 125

Query: 119 -WRTRALACRILL---HDYF---TVETSDLGLAKLLMINQTQTLTGMRETKGYLP----- 166
            +  R LA R  L     Y     V+  D GLA+ +  +        +E +G LP     
Sbjct: 126 HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYR----KEGEGLLPVRWMA 181

Query: 167 PEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVK-----EK 221
           PE   +   T + DV+SFGV++ EI++       G  P        + +Q V      +K
Sbjct: 182 PESLLDGKFTTQSDVWSFGVLMWEILTL------GQQPYPALNNQEV-LQHVTAGGRLQK 234

Query: 222 PPLRPSLRIVALMLQSILEVPSPPCSF 248
           P   P  +I  LM     + PS   +F
Sbjct: 235 PENCPD-KIYQLMTNCWAQDPSERPTF 260

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 136 VETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR 195
           ++  DLG+A++L  NQ    + +  T  Y+ PE F N P   K DV++ G  + E+ + +
Sbjct: 141 IKVGDLGIARVLE-NQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLK 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 66/272 (24%), Positives = 92/272 (33%), Gaps = 78/272 (28%)

Query: 35  GSFSTVYTGV-LAPGDKT-NIGVKKL----------DKVVHVAH-----HKNLVCLLGYH 77
           GSF  V  G     G K   + VK L          D +   A      H+NL+ L G  
Sbjct: 6   GSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGV- 64

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT----------WQQRMQ-----------DCIR 116
           +     ++V +     S    L + LR                +Q             I 
Sbjct: 65  VLTHPLMMVTELAPLGS----LLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIH 120

Query: 117 DCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK----GYLPPEWFR 171
                R LA R ILL     V+  D GL + L  N+   +  M E       +  PE  R
Sbjct: 121 -----RDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV--MEEHLKVPFAWCAPESLR 173

Query: 172 NMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP-KTLEKPVMIAIQFVK---------EK 221
               +   DV+ FGV L E+ +       G +P   L        Q +K         E+
Sbjct: 174 TRTFSHASDVWMFGVTLWEMFT------YGEEPWAGLS-----GSQILKKIDKEGERLER 222

Query: 222 PPLRPSLRIVALMLQSILEVPSPPCSFAFAIR 253
           P   P   I  +MLQ     P+   +FA A+R
Sbjct: 223 PEACPQ-DIYNVMLQCWAHNPADRPTFA-ALR 252

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG-MRETKGYLPPEWFRNMPVTVKV 179
           R LA R ILL +   V+  D GLA+ +  +      G  R    ++ PE   +   T++ 
Sbjct: 203 RDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS 262

Query: 180 DVYSFGVMLLEIIS 193
           DV+SFGV+L EI S
Sbjct: 263 DVWSFGVLLWEIFS 276

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.98
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.98
PHA03210	501	serine/threonine kinase US3; Provisional	99.98
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.98
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.98
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.98
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.98
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.98
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.98
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.98
PLN00009	294	cyclin-dependent kinase A; Provisional	99.98
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.98
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.98
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.98
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.98
PTZ00284	467	protein kinase; Provisional	99.98
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.98
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.98
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.98
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.98
KOG0586	596	consensus Serine/threonine protein kinase [General	99.98
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.98
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.98
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.98
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.98
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.98
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.98
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.97
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.97
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.97
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.97
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.97
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.97
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.97
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.97
PHA02882	294	putative serine/threonine kinase; Provisional	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
KOG0610	459	consensus Putative serine/threonine protein kinase	99.97
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.97
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.97
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.97
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.97
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.97
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.97
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.96
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.96
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.96
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.95
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.95
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.94
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.94
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.94
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.94
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.93
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.93
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.93
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.93
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.93
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.91
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.91
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.91
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.9
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.89
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.89
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.87
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.86
PRK09188	365	serine/threonine protein kinase; Provisional	99.78
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.71
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.68
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.68
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.68
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.66
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.65
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.6
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.6
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.59
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.57
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.55
PRK12274	218	serine/threonine protein kinase; Provisional	99.51
PRK14879	211	serine/threonine protein kinase; Provisional	99.49
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.49
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.48
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.48
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.42
PRK10345	210	hypothetical protein; Provisional	99.37
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.37
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.3
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.26
smart00090	237	RIO RIO-like kinase.	99.21
KOG1243	690	consensus Protein kinase [General function predict	99.16
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.06
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.02
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.98
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.95
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.9
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.87
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.87
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.86
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.55
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.5
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.46
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.43
COG4248	637	Uncharacterized protein with protein kinase and he	98.05
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.98
KOG3087	229	consensus Serine/threonine protein kinase [General	97.97
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.95
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.91
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.88
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.63
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.57
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.5
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.41
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.41
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.39
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.21
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.18
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.12
PRK09902	216	hypothetical protein; Provisional	96.97
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.81
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.32
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	96.28
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	95.84
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	95.38
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	95.29
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	95.12
PF01636	239	APH: Phosphotransferase enzyme family This family	93.18
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	91.85
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	91.73
PHA00451	362	protein kinase	91.46
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	90.71
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	90.4
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	89.04
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	88.25
PLN02756	418	S-methyl-5-thioribose kinase	86.82
PLN02876	822	acyl-CoA dehydrogenase	84.01
PRK10593	297	hypothetical protein; Provisional	82.68
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	80.97
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	80.81
PRK09550	401	mtnK methylthioribose kinase; Reviewed	80.02

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.6e-42  Score=297.14  Aligned_cols=209  Identities=17%  Similarity=0.245  Sum_probs=186.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ..|...+.||+|+|..||.++.. .++..||+|++.                 ++.+.++|||||+++++|++.+..|+|
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~-~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDL-DTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEc-CCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEE
Confidence            57999999999999999999985 589999999887                 378899999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      +|+|+.++|..+++....++      +..++...+.++|.++++|+     |+|++++.++|++|||+|..+. .+....
T Consensus        97 LELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le-~~~Erk  175 (592)
T KOG0575|consen   97 LELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLE-YDGERK  175 (592)
T ss_pred             EEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeec-Cccccc
Confidence            99999999999999666654      45677777899999999999     9999999999999999999876 345566


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhhc
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~~  220 (266)
                      ...+||+.|.|||++.....+..+||||+||++|.|+.|++||...               .|...+....++|.++|+.
T Consensus       176 ~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~  255 (592)
T KOG0575|consen  176 KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRP  255 (592)
T ss_pred             ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcC
Confidence            7789999999999999888999999999999999999999999873               2455667778999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      ||.+|||+++|+.-
T Consensus       256 ~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  256 NPSERPSLDEVLDH  269 (592)
T ss_pred             CcccCCCHHHHhcC
Confidence            99999999999853

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-42  Score=281.53  Aligned_cols=208  Identities=17%  Similarity=0.203  Sum_probs=175.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC-eEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE-CRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~-~~~lv   86 (266)
                      .+++..++.||+|..|+|||+.++ .++..+|+|.+.               ++++..+||+||++||.|.+++ ...++
T Consensus        78 ~~dle~~~~lG~G~gG~V~kv~Hk-~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~  156 (364)
T KOG0581|consen   78 LSDLERLGVLGSGNGGTVYKVRHK-PTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISIC  156 (364)
T ss_pred             HHHhhhhhhcccCCCcEEEEEEEc-CCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEee
Confidence            347788899999999999999987 778899999984               3777889999999999999999 59999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||++|+|.+++...++..      +..++...+.++|+ +.++|+     |+||+..|.+||||||.+..+...   .
T Consensus       157 mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS---~  233 (364)
T KOG0581|consen  157 MEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS---I  233 (364)
T ss_pred             hhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh---h
Confidence            99999999999999766643      33445555566663 555555     999999999999999999987532   5


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------C----Cc-cccchHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------S----DP-KTLEKPVM  212 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~----~~-~~~~~~~~  212 (266)
                      .....||..|||||++.+..|+.++||||||++++|+++|+.|+...                 .    +. ..++++..
T Consensus       234 a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~  313 (364)
T KOG0581|consen  234 ANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRS  313 (364)
T ss_pred             cccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHH
Confidence            56788999999999999999999999999999999999999987652                 1    22 25667999


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ++..||+-||.+||++.++++.
T Consensus       314 FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  314 FVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             HHHHHhcCCcccCCCHHHHhcC
Confidence            9999999999999999998853

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=281.90  Aligned_cols=210  Identities=18%  Similarity=0.252  Sum_probs=177.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..++|...++||.|+|++||+|+++ .++..||||.+.                ++++.++|||||.+++++..++.+||
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~-~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~l   86 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHK-KSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYL   86 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEec-cCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEE
Confidence            4678899999999999999999997 566999999887                38889999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCC------CEEEEeecCcceeec
Q 042690           86 VYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDY------FTVETSDLGLAKLLM  148 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~------~~~~l~Dfg~a~~~~  148 (266)
                      |||||+||+|.+|++..+++      .+..++..+++.+|..+++|+     |||++..      -.+|++|||+|+.+.
T Consensus        87 VMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~  166 (429)
T KOG0595|consen   87 VMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ  166 (429)
T ss_pred             EEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC
Confidence            99999999999999988764      466888888888888888877     9999865      468999999999875


Q ss_pred             cccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchH
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKP  210 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~  210 (266)
                        +.......+|++.|||||++....|+.++|+||+|+|+|++++|++||....                  +.......
T Consensus       167 --~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~  244 (429)
T KOG0595|consen  167 --PGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPL  244 (429)
T ss_pred             --chhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCch
Confidence              3444556789999999999999999999999999999999999999998411                  22233445


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+++...+..++..|-++.+.+..
T Consensus       245 ~~Ll~~ll~~~~~~~~~~~~~~~~  268 (429)
T KOG0595|consen  245 RELLISLLQRNPKDRISFEDFFDH  268 (429)
T ss_pred             hhhhhHHHhcCccccCchHHhhhh
Confidence            578888888888888877766544

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-41  Score=285.47  Aligned_cols=217  Identities=23%  Similarity=0.289  Sum_probs=180.4

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-eE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-CR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-~~   83 (266)
                      .+..++.+.+.||.|+||+||+|.|+  ....||+|++.                .++++++|||||+++|++..+. ..
T Consensus        38 i~~~~l~~~~~iG~G~~g~V~~~~~~--g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~  115 (362)
T KOG0192|consen   38 IDPDELPIEEVLGSGSFGTVYKGKWR--GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSL  115 (362)
T ss_pred             cChHHhhhhhhcccCCceeEEEEEeC--CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCce
Confidence            44566777788999999999999994  33338998765                3778899999999999999887 78


Q ss_pred             EEEEEcCCCCCHHHHHhh--cCCCCHHHHHH------HHHHHhhhcC-cccc-----ceeecCCC-EEEEeecCcceeec
Q 042690           84 LLVYKFMHNRSISSLLYE--CLRPTWQQRMQ------DCIRDCWRTR-ALAC-----RILLHDYF-TVETSDLGLAKLLM  148 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~l~------~~~~~~~~~~-~~h~-----nili~~~~-~~~l~Dfg~a~~~~  148 (266)
                      .+||||+++|+|.+++..  ...+++...+.      .++.++|..+ ++|+     |+|++.++ ++|++|||+++...
T Consensus       116 ~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~  195 (362)
T KOG0192|consen  116 CIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKV  195 (362)
T ss_pred             EEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeec
Confidence            999999999999999987  34555555444      4446888888 7887     99999997 99999999998865


Q ss_pred             cccccccccccCCCCcCCccccC--CCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccch
Q 042690          149 INQTQTLTGMRETKGYLPPEWFR--NMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEK  209 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~  209 (266)
                      ... ...+...||+.|||||++.  ...++.++||||||+++|||+||+.||...                 .+......
T Consensus       196 ~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp~~p~~~~~~  274 (362)
T KOG0192|consen  196 ISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRPPIPKECPPH  274 (362)
T ss_pred             ccc-ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHH
Confidence            322 3333467999999999999  568999999999999999999999999872                 23336678


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +..++.+||..||..||++.+++..|+.+..
T Consensus       275 l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  275 LSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             HHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence            8899999999999999999999999998855

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-43  Score=279.48  Aligned_cols=215  Identities=20%  Similarity=0.245  Sum_probs=175.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEE-EeCCe-E
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYH-IEQEC-R   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~-~~~~~-~   83 (266)
                      ..++|++++.||.|+||.|||+... .++..+|+|.+.                .++++++|||||++++.. ..++. +
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~-~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evl   95 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCL-LDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVL   95 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeec-cCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhh
Confidence            3467999999999999999999976 688899999876                389999999999999943 33334 8


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC----C------CHHHHHHHHHHHhhh---------cCccccceeecCCCEEEEeecCcc
Q 042690           84 LLVYKFMHNRSISSLLYECLR----P------TWQQRMQDCIRDCWR---------TRALACRILLHDYFTVETSDLGLA  144 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~----~------~~~~~l~~~~~~~~~---------~~~~h~nili~~~~~~~l~Dfg~a  144 (266)
                      +||||+|..|+|.+.++....    .      .+..++..++..+|.         +++.+.||+++++|.+||+|||++
T Consensus        96 nivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591|consen   96 NIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             HHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhH
Confidence            899999999999999984322    2      234566666666665         444455999999999999999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------C-cccc
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------D-PKTL  207 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~-~~~~  207 (266)
                      +.+.. .........||+.||+||.+.+.+|+.+|||||+||++|||..-++||.++.                + ..++
T Consensus       176 r~l~s-~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p~~~YS  254 (375)
T KOG0591|consen  176 RFLSS-KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLPDEHYS  254 (375)
T ss_pred             hHhcc-hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCcHHHhh
Confidence            98763 3444456889999999999999999999999999999999999999998821                2 3466


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ..+..++..|+..||+.||+...++..+..-
T Consensus       255 ~~l~~li~~ci~vd~~~RP~t~~~v~di~~~  285 (375)
T KOG0591|consen  255 TDLRELINMCIAVDPEQRPDTVPYVQDIQSE  285 (375)
T ss_pred             hHHHHHHHHHccCCcccCCCcchHHHHHHHH
Confidence            7888899999999999999866666555553

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-41  Score=287.94  Aligned_cols=218  Identities=21%  Similarity=0.295  Sum_probs=184.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      +.+.++++||+|.||.||.|.|+  ....||+|.+.             ++|++++|+|||+++++|..+..++|||||+
T Consensus       206 ~~l~l~~~LG~G~FG~V~~g~~~--~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m  283 (468)
T KOG0197|consen  206 EELKLIRELGSGQFGEVWLGKWN--GSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYM  283 (468)
T ss_pred             HHHHHHHHhcCCccceEEEEEEc--CCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEec
Confidence            46788999999999999999995  55567777665             4999999999999999999988999999999


Q ss_pred             CCCCHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      ..|+|.++++...  .      +.+..+++..+.++.+++++|+     ||||+++..+|++|||+|+....+.-.....
T Consensus       284 ~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~  363 (468)
T KOG0197|consen  284 PKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEG  363 (468)
T ss_pred             ccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCC
Confidence            9999999999622  2      4566777777788888888887     9999999999999999999654333323333


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~~  220 (266)
                      ..-...|.|||.+....++.+|||||||+++||++| |+.|+.+                ..|+..++.+.+++..||..
T Consensus       364 ~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~  443 (468)
T KOG0197|consen  364 GKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHE  443 (468)
T ss_pred             CCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhC
Confidence            445678999999999999999999999999999998 6667665                45677788999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCC
Q 042690          221 KPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +|.+|||++.+...|+.......
T Consensus       444 ~P~~RPtF~~L~~~l~~~~~~~~  466 (468)
T KOG0197|consen  444 DPEDRPTFETLREVLEDFFTSTE  466 (468)
T ss_pred             CcccCCCHHHHHHHHHHhhhccc
Confidence            99999999999999888766443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2.3e-41  Score=270.27  Aligned_cols=208  Identities=19%  Similarity=0.241  Sum_probs=174.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++|+.+.++|+|+||+|||++++ .+++.||||++.                +++++++|+|+|.++++|.....++||
T Consensus         1 MekYE~LgkvGEGSYGvV~KCrnk-~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLV   79 (396)
T KOG0593|consen    1 MEKYEKLGKVGEGSYGVVMKCRNK-DTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLV   79 (396)
T ss_pred             CcHHhhhhccccCcceEEEEeccC-CcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEE
Confidence            357888999999999999999987 899999999886                388899999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      +|||+..-|++.-+.-..      ..+..++..+.+.||.++++|+     ||||+.+|.+||||||+|+.+.. .+...
T Consensus        80 FE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~-pgd~Y  158 (396)
T KOG0593|consen   80 FEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSA-PGDNY  158 (396)
T ss_pred             eeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcC-Ccchh
Confidence            999998666655442222      3455667777788888888887     99999999999999999998763 44455


Q ss_pred             ccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC--------------------------------
Q 042690          156 TGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------------------  202 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------------------  202 (266)
                      +....|.+|.|||.+.| .+|....||||+||++.||++|++.|++..                                
T Consensus       159 TDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv  238 (396)
T KOG0593|consen  159 TDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGV  238 (396)
T ss_pred             hhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeee
Confidence            56778999999998887 679999999999999999999999998811                                


Q ss_pred             --------------CccccchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          203 --------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       203 --------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                                    .+......++++..|+..||++|++.++++
T Consensus       239 ~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  239 RLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             ecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence                          123345667899999999999999998876

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-40  Score=275.44  Aligned_cols=208  Identities=16%  Similarity=0.206  Sum_probs=179.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      .+.|.+.+.||+|+||.|-+|..+ .+++.||||++.                     ++|++++|||||+++++++.+.
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~-~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEK-KTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEc-ccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            457889999999999999999976 789999999886                     3899999999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCC---CEEEEeecCcceee
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDY---FTVETSDLGLAKLL  147 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~---~~~~l~Dfg~a~~~  147 (266)
                      ..|+||||++||.|.+.+-..+.      ..+..++..++.++|..|+.|+     |||+..+   -.+|++|||+|+..
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            99999999999999999886655      3466888999999999988888     9999877   67899999999986


Q ss_pred             ccccccccccccCCCCcCCccccCCCCC---CcccchhhHHHHHHHHHhCCCcccCCCC--------------------c
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPV---TVKVDVYSFGVMLLEIISCRCVERQGSD--------------------P  204 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~---~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~  204 (266)
                      .  +.......+||+.|.|||++.+...   ..+.|+||+||++|.+++|.+||.+...                    .
T Consensus       330 g--~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~  407 (475)
T KOG0615|consen  330 G--EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWD  407 (475)
T ss_pred             c--cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhh
Confidence            4  4556667899999999999886543   3478999999999999999999987321                    1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ...++.++++.+||..||++||+++|.++
T Consensus       408 ~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  408 RISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             hhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence            23456678999999999999999999875

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-40  Score=282.37  Aligned_cols=214  Identities=23%  Similarity=0.334  Sum_probs=188.7

Q ss_pred             HhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           19 VFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        19 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +--.|+.+..++=||+|+.|.||+|+.   .+..||||++.+       -|++++||||+.+.|+|.....++||||||.
T Consensus       119 WeiPFe~IsELeWlGSGaQGAVF~Grl---~netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa  195 (904)
T KOG4721|consen  119 WEIPFEEISELEWLGSGAQGAVFLGRL---HNETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCA  195 (904)
T ss_pred             ccCCHHHhhhhhhhccCcccceeeeec---cCceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEeeeccc
Confidence            334567778888999999999999997   688999999884       6889999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      .|-|..+++....      .+|...++..+.++|.|.+||+     ||||..+..+|++|||-++.....  .+.....|
T Consensus       196 ~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~--STkMSFaG  273 (904)
T KOG4721|consen  196 QGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK--STKMSFAG  273 (904)
T ss_pred             cccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh--hhhhhhhh
Confidence            9999999997665      4688889999999999999988     999999999999999999876432  34456789


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHHhhhcCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQFVKEKPP  223 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~cl~~~p~  223 (266)
                      |..|||||++.+.+.+.+.||||||+++|||+||+.|+.+                 ..+...+..+.-++++||+-+|.
T Consensus       274 TVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpR  353 (904)
T KOG4721|consen  274 TVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPR  353 (904)
T ss_pred             hHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999987                 23455667788899999999999


Q ss_pred             CCCCHHHHHHHHHH
Q 042690          224 LRPSLRIVALMLQS  237 (266)
Q Consensus       224 ~Rps~~~il~~l~~  237 (266)
                      .||++++|+.-|+=
T Consensus       354 NRPSFrqil~HldI  367 (904)
T KOG4721|consen  354 NRPSFRQILLHLDI  367 (904)
T ss_pred             CCccHHHHHHHHhh
Confidence            99999999887753

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.1e-40  Score=276.51  Aligned_cols=209  Identities=18%  Similarity=0.264  Sum_probs=179.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~~   84 (266)
                      ...|+.+++||+|+||.||+|+.. .++..||+|++.                .+|++++||||+++.+...+.  +.+|
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~-~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siY  194 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDL-ETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIY  194 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeec-ccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEE
Confidence            456888999999999999999975 789999999887                499999999999999998776  6899


Q ss_pred             EEEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +|+|||+. +|.-++.... +      ..++.++...+.+||+++++|+     |||||++|.+||+|||+|+.+.....
T Consensus       195 lVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~  273 (560)
T KOG0600|consen  195 LVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS  273 (560)
T ss_pred             EEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCC
Confidence            99999998 8888876532 2      3466789999999999999998     99999999999999999998876666


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                      ...+....|..|.|||++.|. .|+.+.|+||.|||+.||++|++++++..                             
T Consensus       274 ~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~  353 (560)
T KOG0600|consen  274 APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHAT  353 (560)
T ss_pred             cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCccc
Confidence            667788889999999988765 59999999999999999999999998811                             


Q ss_pred             ---------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ---------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ---------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     ........++++..+|..||++|.|+.+.++
T Consensus       354 ~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  354 IFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             ccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                           1122345566999999999999999988774

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=5.4e-40  Score=281.16  Aligned_cols=207  Identities=19%  Similarity=0.219  Sum_probs=183.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .+|.+.+.||+|+||.||||+.+ .+.+.||+|.+.                ++++.++||||+.+++.|++..++|+|+
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK-~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRK-YTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVT   80 (808)
T ss_pred             cchhHHHHhcCCccceeeecccc-cceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEe
Confidence            57888899999999999999965 889999998776                3889999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |||.| +|..++.+.+.+..      ...+..++.++|.++++|+     ||++...|.+|+||||+|+.+.. ++....
T Consensus        81 e~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~-~t~vlt  158 (808)
T KOG0597|consen   81 EYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMST-NTSVLT  158 (808)
T ss_pred             hhhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhccc-Cceeee
Confidence            99987 99999998887653      4556677799999999987     89999999999999999998763 444556


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhhhcC
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl~~~  221 (266)
                      ...||+.|||||...+.+|+..+|.||+|||+||+.+|++||..               ..+......+..++...|..|
T Consensus       159 sikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kd  238 (808)
T KOG0597|consen  159 SIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKD  238 (808)
T ss_pred             eccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcC
Confidence            68899999999999999999999999999999999999999965               345567778889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+|-++.+++.
T Consensus       239 P~~RltW~~Ll~  250 (808)
T KOG0597|consen  239 PAQRLTWTDLLG  250 (808)
T ss_pred             hhhcccHHHHhc
Confidence            999999998874

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=260.98  Aligned_cols=204  Identities=19%  Similarity=0.174  Sum_probs=178.2

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -+.++|++++.||+|+||+||.++.+ .+++.+|+|.+.+                 ++.+++||.||+++-.|.+.+.+
T Consensus        22 ~~~~dF~~lkviGkG~fGkV~~Vrk~-dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kL  100 (357)
T KOG0598|consen   22 VGPDDFEILKVIGKGSFGKVFQVRKK-DTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKL  100 (357)
T ss_pred             CChhheeeeeeeeccCCceEEEEEEc-ccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeE
Confidence            45679999999999999999999977 8899999998873                 78889999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+|+||+.||.|.-++.+.+.+.      +...+..++.++|..+++|+     |||++.+|.++|+|||+++.... .+
T Consensus       101 ylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~-~~  179 (357)
T KOG0598|consen  101 YLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLK-DG  179 (357)
T ss_pred             EEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhccc-CC
Confidence            99999999999999999777654      44567777799999998888     99999999999999999997542 23


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~  216 (266)
                      ......+||+.|||||.+.+.+++.++|.||||+++|+|++|.+||....                +.....+..+++..
T Consensus       180 ~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~  259 (357)
T KOG0598|consen  180 DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKK  259 (357)
T ss_pred             CccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHH
Confidence            34445799999999999999999999999999999999999999998722                22356777889999


Q ss_pred             hhhcCCCCCC
Q 042690          217 FVKEKPPLRP  226 (266)
Q Consensus       217 cl~~~p~~Rp  226 (266)
                      .++.||.+|-
T Consensus       260 LL~rdp~~RL  269 (357)
T KOG0598|consen  260 LLKRDPRQRL  269 (357)
T ss_pred             HhccCHHHhc
Confidence            9999999994

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-38  Score=269.09  Aligned_cols=211  Identities=18%  Similarity=0.218  Sum_probs=185.0

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCe
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      -...+|...+.||+|+|++|++|+.+ .++..||||++.+                 .|..+ .||.|+++|-.|.++..
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~-~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREK-ATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeec-CCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            34568999999999999999999976 6899999998873                 67777 79999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      +|+|+||+++|+|.++|+..+.+.      +..++..++.++|.++++|+     |||++.||.++|.|||.|+.+....
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~  228 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQ  228 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhh
Confidence            999999999999999999887754      55677888899999999998     9999999999999999999875321


Q ss_pred             cc----------c--cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCc
Q 042690          152 TQ----------T--LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDP  204 (266)
Q Consensus       152 ~~----------~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~  204 (266)
                      ..          .  ....+||-.|.+||++.....++.+|+|+||||+|.|+.|++||..               ..++
T Consensus       229 ~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~  308 (604)
T KOG0592|consen  229 KSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPE  308 (604)
T ss_pred             ccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCC
Confidence            11          1  1347899999999999999999999999999999999999999987               4466


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      ...+...+|+.+.|..||.+|.++.+|-
T Consensus       309 ~fp~~a~dLv~KLLv~dp~~Rlt~~qIk  336 (604)
T KOG0592|consen  309 GFPEDARDLIKKLLVRDPSDRLTSQQIK  336 (604)
T ss_pred             CCCHHHHHHHHHHHccCccccccHHHHh
Confidence            6778888999999999999999997774

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-39  Score=271.30  Aligned_cols=208  Identities=18%  Similarity=0.263  Sum_probs=178.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------HhhhcC-CCceeeeeeEEEeCC-eEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAH-HKNLVCLLGYHIEQE-CRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------~l~~~~-h~~iv~~~~~~~~~~-~~~l   85 (266)
                      ...|.++++||.|+||.||+|+.+ .++..||||++++               .++++. |||||++++++.+.. .+++
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~-~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSK-ETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeec-CCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            357889999999999999999976 7788899999983               677888 999999999998877 8999


Q ss_pred             EEEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      |||||+. +|.++++++.+       ..|+.++...+.++|.+|+.|+     |||+..+..+||+|||+|+....  ..
T Consensus        88 VfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~S--kp  164 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRS--KP  164 (538)
T ss_pred             eHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEeccccccccccc--CC
Confidence            9999977 99999998765       3466777788899999998888     99999999999999999998642  33


Q ss_pred             ccccccCCCCcCCccc-cCCCCCCcccchhhHHHHHHHHHhCCCcccC--------------------------------
Q 042690          154 TLTGMRETKGYLPPEW-FRNMPVTVKVDVYSFGVMLLEIISCRCVERQ--------------------------------  200 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~-~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~--------------------------------  200 (266)
                      ..+..+.|.+|.|||+ ++.+-|+.+.||||+|||++|+.+-++.|++                                
T Consensus       165 PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~m  244 (538)
T KOG0661|consen  165 PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAM  244 (538)
T ss_pred             CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHh
Confidence            4456778999999995 5577799999999999999999999999888                                


Q ss_pred             -------------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          201 -------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       201 -------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                   ...+....+..+++.+|++.||.+||++.+.++.
T Consensus       245 nf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  245 NFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             ccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence                         1123356777889999999999999999998865

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=3.1e-38  Score=248.08  Aligned_cols=208  Identities=17%  Similarity=0.228  Sum_probs=173.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .+|..++.+|+|.||.||+|++. .+++.||||+++                +.++.++|+||+.++|+|...+.+.||+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~-~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDT-ETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEec-CCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEE
Confidence            36778899999999999999975 789999999987                4888999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||++. +|+..+++...       ..|...+...+.+||.+.++|+     |+||+.+|.+|++|||+|+.+... ....
T Consensus        81 Efm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p-~~~~  158 (318)
T KOG0659|consen   81 EFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSP-NRIQ  158 (318)
T ss_pred             Eeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCC-Cccc
Confidence            99986 99999997654       2344555556677887777776     899999999999999999987643 3333


Q ss_pred             ccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCC--------------------------------
Q 042690          156 TGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGS--------------------------------  202 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------------------  202 (266)
                      ....-|..|.|||.+.|.. |+...||||.|||+.||+.|.+.|+++.                                
T Consensus       159 ~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~  238 (318)
T KOG0659|consen  159 THQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKI  238 (318)
T ss_pred             ccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHH
Confidence            3446799999999887654 8999999999999999999999888711                                


Q ss_pred             -----------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 -----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 -----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                 -+......++++..++.+||.+|.++.+.+++
T Consensus       239 ~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  239 QQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             hcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence                       12234566789999999999999999988754

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-38  Score=273.39  Aligned_cols=210  Identities=19%  Similarity=0.213  Sum_probs=181.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...|...++||+|+.|.||.|... .+++.||+|++.              .+|+..+|+|||++++.+...+.+|+|||
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~-~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVME  350 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKI-STKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVME  350 (550)
T ss_pred             hhhhcchhhhccccccceeeeeec-cCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEe
Confidence            345667789999999999999965 788889999886              38899999999999999998899999999


Q ss_pred             cCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           89 FMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      |+++|+|.+.+.....     ..+.+.+..++.++|..+++|+     |||++.+|.+||+|||++........ .....
T Consensus       351 ym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~-KR~Tm  429 (550)
T KOG0578|consen  351 YMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS-KRSTM  429 (550)
T ss_pred             ecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccC-ccccc
Confidence            9999999999986532     2344556667788898899988     89999999999999999998764443 44568


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~~l~~~cl~~  220 (266)
                      .||+.|||||+.....|+++.||||||++++||+.|++||..                  ..+...+..+.+++.+||+.
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~  509 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVV  509 (550)
T ss_pred             cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhc
Confidence            899999999999999999999999999999999999999975                  22445667888999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      |+.+||++.|+|+.
T Consensus       510 dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  510 DVEQRASAKELLEH  523 (550)
T ss_pred             chhcCCCHHHHhcC
Confidence            99999999999853

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=274.00  Aligned_cols=228  Identities=19%  Similarity=0.245  Sum_probs=186.5

Q ss_pred             CCCCchhhhhhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCcee
Q 042690            8 LEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLV   71 (266)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv   71 (266)
                      ++.......+.+.-.++++.+..+||+|+||+||+|.|+    -.||||.+.                ..+++.+|-||+
T Consensus       376 ~~r~~s~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh----GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIl  451 (678)
T KOG0193|consen  376 KNRQASDSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH----GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENIL  451 (678)
T ss_pred             ccccCCccccccccCHHHhhccceeccccccceeecccc----cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhhe
Confidence            344455555556667888999999999999999999995    257887765                388899999999


Q ss_pred             eeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEe
Q 042690           72 CLLGYHIEQECRLLVYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETS  139 (266)
Q Consensus        72 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~  139 (266)
                      -+.|++..++. .||+-+|+|.+|+.+++... +      ..+.++++..++++|..+|+|+     |||+++++++|++
T Consensus       452 LFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIg  530 (678)
T KOG0193|consen  452 LFMGACMNPPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIG  530 (678)
T ss_pred             eeehhhcCCce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEe
Confidence            99999998887 89999999999999998432 2      4567778888899999999998     8999999999999


Q ss_pred             ecCcceeeccccc-cccccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------
Q 042690          140 DLGLAKLLMINQT-QTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------  203 (266)
Q Consensus       140 Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------  203 (266)
                      |||++........ ....-..|...|||||+++   ..+|++++||||||+++|||+||..|+.....            
T Consensus       531 DFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l  610 (678)
T KOG0193|consen  531 DFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYL  610 (678)
T ss_pred             cccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEeccccc
Confidence            9999986542222 2333456889999999876   45799999999999999999999999985211            


Q ss_pred             --------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          204 --------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       204 --------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                              ......+.+|+..||..++.+||.+.+|+..|+.+..
T Consensus       611 ~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~  655 (678)
T KOG0193|consen  611 MPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP  655 (678)
T ss_pred             CccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence                    1123477889999999999999999999998888877

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=264.80  Aligned_cols=207  Identities=17%  Similarity=0.204  Sum_probs=177.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .|..++.||.|+||.||+|... .+++.||+|.+.               .++..++++||.++|+.+..+..+|++|||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~-~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDN-KTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             ccccchhccccccceeeeeeec-cccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            5667789999999999999975 688899999886               278889999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           90 MHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      |.+|++.+.++....+      -+.+.+..++.++|+.+.+|+     ||++..+|.+||+|||.+..+......+ ...
T Consensus        93 ~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-~tf  171 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR-KTF  171 (467)
T ss_pred             hcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhcc-ccc
Confidence            9999999999865442      244566777788888877777     9999999999999999999876443333 678


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhhcCC
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      .||+.|||||++.+..|+.++||||||++++||++|.+|+..-.                .......+.+++..||+.||
T Consensus       172 vGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P  251 (467)
T KOG0201|consen  172 VGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNP  251 (467)
T ss_pred             cccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCc
Confidence            99999999999998899999999999999999999999997611                12455678899999999999


Q ss_pred             CCCCCHHHHHH
Q 042690          223 PLRPSLRIVAL  233 (266)
Q Consensus       223 ~~Rps~~~il~  233 (266)
                      ..||++.++++
T Consensus       252 ~~RpsA~~LLK  262 (467)
T KOG0201|consen  252 EFRPSAKELLK  262 (467)
T ss_pred             ccCcCHHHHhh
Confidence            99999987763

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=6.5e-37  Score=262.48  Aligned_cols=218  Identities=21%  Similarity=0.247  Sum_probs=172.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC-e
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE-C   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~-~   82 (266)
                      .+|.+.+.||+|+||.||+|.+.    ...+..||+|.+.               .+++.+ +||||+++++++...+ .
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGP   86 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCc
Confidence            47899999999999999999852    2345679999874               255566 7999999999887644 5


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC----------------------------------------------------------
Q 042690           83 RLLVYKFMHNRSISSLLYECLR----------------------------------------------------------  104 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~----------------------------------------------------------  104 (266)
                      ++++|||+++|+|.+++.....                                                          
T Consensus        87 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T cd05102          87 LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDL  166 (338)
T ss_pred             eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcccc
Confidence            8899999999999999974311                                                          


Q ss_pred             ----C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCcc
Q 042690          105 ----P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPE  168 (266)
Q Consensus       105 ----~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE  168 (266)
                          +      .+..++..++.++|..+++|+     ||+++.++.++|+|||+++........ ......++..|+|||
T Consensus       167 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE  246 (338)
T cd05102         167 WKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE  246 (338)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcH
Confidence                1      133467777788888888887     899999999999999999865322221 112234567899999


Q ss_pred             ccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHhhhcCCCCCCCHHH
Q 042690          169 WFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRI  230 (266)
Q Consensus       169 ~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~  230 (266)
                      ++.+..++.++||||||+++|+|++ |..||....                 +......+.+++.+||+.||.+||++.+
T Consensus       247 ~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~e  326 (338)
T cd05102         247 SIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSA  326 (338)
T ss_pred             HhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            9988889999999999999999997 888886521                 1223456788999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 042690          231 VALMLQSILEV  241 (266)
Q Consensus       231 il~~l~~~~~~  241 (266)
                      +++.|+.+...
T Consensus       327 l~~~l~~~~~~  337 (338)
T cd05102         327 LVEILGDLLQE  337 (338)
T ss_pred             HHHHHHHHHhc
Confidence            99999988653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-37  Score=257.65  Aligned_cols=215  Identities=16%  Similarity=0.182  Sum_probs=175.5

Q ss_pred             hHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           18 RVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        18 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      .+.-+.+.|++...||.|..+.||+|+..+ .+..||||++.               ..|+.++||||++++..|..+..
T Consensus        20 ~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p-~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~   98 (516)
T KOG0582|consen   20 EFPLNAKDYELQEVIGVGASAVVYLARCIP-TNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSE   98 (516)
T ss_pred             cCCCCccceeEEEEEeccceeEeeeeeecc-cCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecce
Confidence            344567899999999999999999999874 45899999886               37778899999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           83 RLLVYKFMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +|+||+||.+|++.+.++..-+  +      .+.+.+..++.++|.+|.+|+     ||||+.+|.++|+|||.+--+..
T Consensus        99 LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~  178 (516)
T KOG0582|consen   99 LWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFD  178 (516)
T ss_pred             eEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecc
Confidence            9999999999999999986533  2      233455566699999999998     89999999999999998866543


Q ss_pred             cccc---ccccccCCCCcCCccccC--CCCCCcccchhhHHHHHHHHHhCCCcccC------------CCCc--------
Q 042690          150 NQTQ---TLTGMRETKGYLPPEWFR--NMPVTVKVDVYSFGVMLLEIISCRCVERQ------------GSDP--------  204 (266)
Q Consensus       150 ~~~~---~~~~~~~~~~y~aPE~~~--~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------~~~~--------  204 (266)
                      ....   ......||++|||||++.  ...|+.++||||||++..||.+|..||..            +.++        
T Consensus       179 ~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~  258 (516)
T KOG0582|consen  179 SGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLD  258 (516)
T ss_pred             cCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCC
Confidence            2211   114468999999999843  34599999999999999999999999976            1111        


Q ss_pred             -----cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 -----KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 -----~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                           .....+.+++..||..||.+|||++++++
T Consensus       259 ~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  259 KDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             hHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence                 12235667999999999999999999874

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=259.65  Aligned_cols=216  Identities=16%  Similarity=0.212  Sum_probs=183.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcC-CCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAH-HKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~-h~~iv~~~~~~~~~~   81 (266)
                      ..+.|.+.+.||+|+||+|+.|.+. .++..||+|.+.                   .+++.++ ||||+++++++.+..
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~-~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHR-LTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeec-cCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            4668999999999999999999976 566788887533                   2666777 999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeecc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMI  149 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~  149 (266)
                      .+++|||||.+|+|.+++.+.+++.      +.+++..++.+||.+++.|+     |++++.+ +++||+|||++.... 
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~-  172 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP-  172 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC-
Confidence            9999999999999999999866643      56788888899999999988     9999999 999999999998763 


Q ss_pred             ccccccccccCCCCcCCccccCCCC-CC-cccchhhHHHHHHHHHhCCCcccCCC---------------Cccc-cchHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMP-VT-VKVDVYSFGVMLLEIISCRCVERQGS---------------DPKT-LEKPV  211 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~-~~-~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~-~~~~~  211 (266)
                      ..........||+.|+|||++.+.. |+ .++||||+|+++|.|++|..||....               +... .....
T Consensus       173 ~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~~S~~~~  252 (370)
T KOG0583|consen  173 GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYLLSPEAR  252 (370)
T ss_pred             CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCcCCHHHH
Confidence            2344555688999999999999877 75 78999999999999999999998722               3333 67788


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .++.+|+..||..|+++.+|+  ...|...
T Consensus       253 ~Li~~mL~~~P~~R~t~~~i~--~h~w~~~  280 (370)
T KOG0583|consen  253 SLIEKMLVPDPSTRITLLEIL--EHPWFQK  280 (370)
T ss_pred             HHHHHHcCCCcccCCCHHHHh--hChhhcc
Confidence            999999999999999999999  4555443

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-37  Score=276.52  Aligned_cols=222  Identities=21%  Similarity=0.259  Sum_probs=182.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .+++...++||+|.||+||+|...    ..+...||||.++               +++..++|||||+++|+|..++.+
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            346778899999999999999853    2456779999887               388899999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC--------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           84 LLVYKFMHNRSISSLLYECLR--------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~--------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      ++|+|||..|+|.++++....              +      .+..+++..+.++..+.++|+     |.||.++..+|+
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKI  644 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKI  644 (774)
T ss_pred             EEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEe
Confidence            999999999999999985321              2      244555555677777777776     999999999999


Q ss_pred             eecCcceeecccccccc-ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------
Q 042690          139 SDLGLAKLLMINQTQTL-TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------  200 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------  200 (266)
                      +|||+++..-..+=... ....-.++||+||.+..+.+|.+|||||+|+++||+++ |+.|+.+                
T Consensus       645 sDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL  724 (774)
T KOG1026|consen  645 SDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLL  724 (774)
T ss_pred             cccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcc
Confidence            99999986432211122 23445679999999999999999999999999999997 7789987                


Q ss_pred             CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          201 GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       201 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      ..+...+.++.+++..||+.+|.+||++.||-..|+.|.+.++.
T Consensus       725 ~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~~  768 (774)
T KOG1026|consen  725 SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASPK  768 (774)
T ss_pred             cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCcc
Confidence            33555667888899999999999999999999999999886543

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.2e-37  Score=265.00  Aligned_cols=210  Identities=19%  Similarity=0.240  Sum_probs=185.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCe-EEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQEC-RLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~-~~l   85 (266)
                      .+.|..++.+|.|+||.++.++++ .+...+++|.+.                .++++++|||||.+++.|..++. .+|
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk-~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHK-SDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhc-cCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEE
Confidence            467888999999999999999976 677789999876                37888999999999999998887 899


Q ss_pred             EEEcCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           86 VYKFMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ||+||+||++.+.+.....        ..|..++..++.++|..+++|+     |||++.++.++|+|||+|+.+.... 
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~-  160 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPED-  160 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCch-
Confidence            9999999999999986543        3566778888899998899998     9999999999999999999986432 


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC----------------CCCccccchHHHHHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ----------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~----------------~~~~~~~~~~~~l~~~  216 (266)
                      .......||+.||+||.+.+.+|+.++|||||||++|||++-+++|..                ..+..++..+..++..
T Consensus       161 ~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~  240 (426)
T KOG0589|consen  161 SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKS  240 (426)
T ss_pred             hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHH
Confidence            345568899999999999999999999999999999999999999977                3355677888899999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~  234 (266)
                      |+..+|..||++.+++..
T Consensus       241 ~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  241 MLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HhhcCCccCCCHHHHhhC
Confidence            999999999999999866

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-37  Score=256.15  Aligned_cols=215  Identities=20%  Similarity=0.252  Sum_probs=173.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCC--eEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQE--CRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~--~~~lv   86 (266)
                      ..++...+.||+|+||.||++... .++...|+|.+.              .+++.++|||||+++|......  .+++.
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~-~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~   94 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNK-KTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIF   94 (313)
T ss_pred             cchhhhhccccCccceEEEEEEec-CCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEee
Confidence            345777889999999999999986 347778887554              3788899999999999855444  68899


Q ss_pred             EEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeecc--cc
Q 042690           87 YKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMI--NQ  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~--~~  151 (266)
                      |||+.+|+|.+++...+ .+      .+.+++...+.++|+++++|+     |||++. ++.+||+|||+++....  ..
T Consensus        95 mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~  174 (313)
T KOG0198|consen   95 MEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTK  174 (313)
T ss_pred             eeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccccc
Confidence            99999999999999876 43      355667777799998888887     999999 79999999999987653  22


Q ss_pred             ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~~  212 (266)
                      ........||+.|||||++.++ ...+++|||||||++.||+||++||.+                  ..+...+....+
T Consensus       175 ~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~  254 (313)
T KOG0198|consen  175 SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKD  254 (313)
T ss_pred             ccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHH
Confidence            2334457899999999998853 344599999999999999999999875                  113334456778


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ++.+|+..+|..|||++++|+..--.
T Consensus       255 Fl~~C~~~~p~~Rpta~eLL~hpf~~  280 (313)
T KOG0198|consen  255 FLRKCFKRDPEKRPTAEELLEHPFLK  280 (313)
T ss_pred             HHHHHhhcCcccCcCHHHHhhChhhh
Confidence            99999999999999999999764443

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=263.15  Aligned_cols=222  Identities=22%  Similarity=0.242  Sum_probs=180.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCc--ce-eeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDK--TN-IGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~--~~-vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      .+++.+.++||+|+||.||+|..+...+  .. ||+|...                 ++|++++|||||++||+...+..
T Consensus       156 H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P  235 (474)
T KOG0194|consen  156 HSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP  235 (474)
T ss_pred             ccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc
Confidence            4577788999999999999999864433  23 8888765                 38889999999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC-CCHHHHHHHHH------HHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLR-PTWQQRMQDCI------RDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~-~~~~~~l~~~~------~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      +++|||+|.||+|.++++.... ++..+.+..+.      +++|..+.+|+     |.|++.++.+|++|||+++.... 
T Consensus       236 l~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~-  314 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ-  314 (474)
T ss_pred             cEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcc-
Confidence            9999999999999999998764 66666655544      67777777776     99999999999999999987531 


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC-----------------CCCccccchHHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ-----------------GSDPKTLEKPVM  212 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~-----------------~~~~~~~~~~~~  212 (266)
                      .........-...|+|||.+....+++++||||||+++||+++ |..|+++                 ..+...+..+..
T Consensus       315 ~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r~~~~~~~p~~~~~  394 (474)
T KOG0194|consen  315 YVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYRMPIPSKTPKELAK  394 (474)
T ss_pred             eeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCccCCCCCCCHHHHHH
Confidence            1111112245679999999998899999999999999999998 6778877                 223444566677


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCCC
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPP  245 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~~  245 (266)
                      ++.+||..+|..||+|.++.+.++.+.....++
T Consensus       395 ~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~~  427 (474)
T KOG0194|consen  395 VMKQCWKKDPEDRPTMSTIKKKLEALEKKKEAF  427 (474)
T ss_pred             HHHHhccCChhhccCHHHHHHHHHHHHhccccc
Confidence            899999999999999999999999998876643

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=258.85  Aligned_cols=214  Identities=36%  Similarity=0.522  Sum_probs=171.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCC-eEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQE-CRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~-~~~lv~e~   89 (266)
                      .|.....||+|+||.||+|...  ++..||||++.              +++..++|||+|+++|||.+.+ +.+||+||
T Consensus        76 ~Fs~~~~ig~Ggfg~VYkG~l~--~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEy  153 (361)
T KOG1187|consen   76 NFSESNLIGEGGFGTVYKGVLS--DGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEY  153 (361)
T ss_pred             CCchhcceecCCCeEEEEEEEC--CCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEc
Confidence            3444569999999999999985  55889999654              2666889999999999999888 59999999


Q ss_pred             CCCCCHHHHHhhcC--CCCHHHHHHHHH------HHhh--------hcCccccceeecCCCEEEEeecCcceeecccccc
Q 042690           90 MHNRSISSLLYECL--RPTWQQRMQDCI------RDCW--------RTRALACRILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~~~~~~l~~~~------~~~~--------~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +++|+|.+++....  .++|..++.+++      .++|        |+++...|||+|.+..+||+|||+|+..... ..
T Consensus       154 m~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~-~~  232 (361)
T KOG1187|consen  154 MPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEG-DT  232 (361)
T ss_pred             cCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCcc-cc
Confidence            99999999998654  789999999888      3344        3444444999999999999999999654321 22


Q ss_pred             ccccc-cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC--------------------------C-----
Q 042690          154 TLTGM-RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ--------------------------G-----  201 (266)
Q Consensus       154 ~~~~~-~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~--------------------------~-----  201 (266)
                      ..... .||.+|+|||....+..+.++||||||+++.|++||+.+...                          +     
T Consensus       233 ~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~  312 (361)
T KOG1187|consen  233 SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKE  312 (361)
T ss_pred             ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccC
Confidence            22222 789999999999888899999999999999999999975543                          0     


Q ss_pred             -CCc--cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          202 -SDP--KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       202 -~~~--~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                       ..+  .....+..+..+|++.+|..||+|.+++++|+.....
T Consensus       313 ~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  313 GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence             011  2345566799999999999999999999999766554

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-36  Score=264.05  Aligned_cols=219  Identities=16%  Similarity=0.193  Sum_probs=190.6

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ...+-|++.+.||.|+-|.|-.|++. .+|+.+|||++-+                 +|+.+.|||++++||+|++..++
T Consensus         9 ~tiGpwkLgkTLG~Gstg~vrlakh~-~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~l   87 (786)
T KOG0588|consen    9 NTIGPWKLGKTLGKGSTGCVRLAKHA-ETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHL   87 (786)
T ss_pred             ccccceeccccccCCCCceehhhhcc-cccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceE
Confidence            34678999999999999999999986 8999999998762                 88899999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+|.||+++|-|++++...+.+.      +..++.+++.+||+.++.|+     |+|++..+.+|++|||+|..-.  ++
T Consensus        88 ylvlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~--~g  165 (786)
T KOG0588|consen   88 YLVLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEV--PG  165 (786)
T ss_pred             EEEEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeeccc--CC
Confidence            99999999999999998877754      55677788899998888887     9999999999999999998743  45


Q ss_pred             cccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~  216 (266)
                      ...+..+|++.|.|||.+.|.+| ..++||||.|+|+|.|+||+.||.+               ..+.+.+.+..+++++
T Consensus       166 klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~  245 (786)
T KOG0588|consen  166 KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRR  245 (786)
T ss_pred             ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHH
Confidence            56667889999999999999998 4689999999999999999999987               2356677888999999


Q ss_pred             hhhcCCCCCCCHHHHHHH--HHHHHhCC
Q 042690          217 FVKEKPPLRPSLRIVALM--LQSILEVP  242 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~--l~~~~~~~  242 (266)
                      |++.||..|-+++||++-  |.+-...+
T Consensus       246 ml~VDp~~RiT~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  246 MLDVDPSTRITTEEILKHPFLSGYTSLP  273 (786)
T ss_pred             HhccCccccccHHHHhhCchhhcCCCCC
Confidence            999999999999999864  55544433

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=279.12  Aligned_cols=220  Identities=24%  Similarity=0.310  Sum_probs=175.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcc----eeeeeeHHH---------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKT----NIGVKKLDK---------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~----~vaiK~~~~---------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ...+.+.+.||.|+||.||.|...+..+.    .||+|.+.+               +|++++|||||+++|++.+.+..
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            45788999999999999999997644443    489988773               88899999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC-------CCHHHHHHHH------HHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           84 LLVYKFMHNRSISSLLYECLR-------PTWQQRMQDC------IRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~------~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      ++++|||++|+|..+|++.+.       +.....+.++      +.++....++|+     |.|++....+|++|||+|+
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlAr  850 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLAR  850 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhH
Confidence            999999999999999997622       3333333333      355555555555     9999999999999999999


Q ss_pred             eeccccccccccc-cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCcccc
Q 042690          146 LLMINQTQTLTGM-RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTL  207 (266)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~  207 (266)
                      .....+-...... .-...|||||.+..+.++.++||||||+++||++| |..|+..                +.+...+
T Consensus       851 Diy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP  930 (1025)
T KOG1095|consen  851 DIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCP  930 (1025)
T ss_pred             hhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCC
Confidence            4322221222222 33568999999999999999999999999999998 5568876                4456667


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ..+.+++.+||+.+|++||++..|++.+..+....
T Consensus       931 ~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~  965 (1025)
T KOG1095|consen  931 EKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAA  965 (1025)
T ss_pred             hHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhh
Confidence            78889999999999999999999999988886554

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=6e-36  Score=255.65  Aligned_cols=205  Identities=17%  Similarity=0.150  Sum_probs=172.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +.+|.+.+.||+|+||.||+|.++ .+++.+|+|.+.                 .+++.++||||+++++++..++..++
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   95 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHK-GTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYF   95 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEEC-CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEE
Confidence            568999999999999999999986 678889999653                 36778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+.+++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++......    
T Consensus        96 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~----  171 (329)
T PTZ00263         96 LLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR----  171 (329)
T ss_pred             EEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCC----
Confidence            999999999999998765543      33556667788888888887     899999999999999999865321    


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~  219 (266)
                      .....|++.|+|||.+.+..++.++|+|||||++|+|++|..||....               +......+.+++.+||+
T Consensus       172 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~  251 (329)
T PTZ00263        172 TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQ  251 (329)
T ss_pred             cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhh
Confidence            123468999999999998889999999999999999999999997522               22244567789999999


Q ss_pred             cCCCCCCC-----HHHHH
Q 042690          220 EKPPLRPS-----LRIVA  232 (266)
Q Consensus       220 ~~p~~Rps-----~~~il  232 (266)
                      .||.+||+     +++++
T Consensus       252 ~dP~~R~~~~~~~~~~ll  269 (329)
T PTZ00263        252 TDHTKRLGTLKGGVADVK  269 (329)
T ss_pred             cCHHHcCCCCCCCHHHHh
Confidence            99999997     57765

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-36  Score=238.78  Aligned_cols=199  Identities=19%  Similarity=0.194  Sum_probs=175.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++++|++++.||.|+||.|.+++.+ ..+..+|+|.+.+                 +++.+.||.++++++.+.+.+.++
T Consensus        42 ~l~dfe~~~tlGtGSFGrV~LVr~k-~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~ly  120 (355)
T KOG0616|consen   42 SLQDFERLKTLGTGSFGRVHLVREK-HSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLY  120 (355)
T ss_pred             chhhhhheeeeccCccceEEEEEEc-cCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEE
Confidence            3568999999999999999999987 6699999998872                 888889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||++||.|..+++..++++      +..++..++.++|+++++.+     |||+|.+|.+|+.|||+|+....    
T Consensus       121 mvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~----  196 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSG----  196 (355)
T ss_pred             EEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecC----
Confidence            9999999999999999877754      56777788899999988866     99999999999999999998642    


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl  218 (266)
                      .....+||+.|+|||.+++.+++.++|-||||+++|||+.|.+||....               |......+.+++...+
T Consensus       197 rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~fs~~~kdLl~~LL  276 (355)
T KOG0616|consen  197 RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSYFSSDAKDLLKKLL  276 (355)
T ss_pred             cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcccCHHHHHHHHHHH
Confidence            2556789999999999999999999999999999999999999998733               4555667778999999


Q ss_pred             hcCCCCC
Q 042690          219 KEKPPLR  225 (266)
Q Consensus       219 ~~~p~~R  225 (266)
                      +.|-.+|
T Consensus       277 ~vD~t~R  283 (355)
T KOG0616|consen  277 QVDLTKR  283 (355)
T ss_pred             hhhhHhh
Confidence            9998888

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=9e-37  Score=246.84  Aligned_cols=209  Identities=17%  Similarity=0.203  Sum_probs=173.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~   83 (266)
                      ++++|+.+.+|++|+||.||+|+++ .++..||+|+++                .++.+.+|||||.+..+....  +.+
T Consensus        74 sv~efe~lnrI~EGtyGiVYRakdk-~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   74 SVEEFEKLNRIEEGTYGVVYRAKDK-KTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             cHHHHHHHhhcccCcceeEEEeccC-CcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            4668999999999999999999976 788999999987                277788999999999987643  469


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |+|||||+. +|..++.... ++      ....++..+++++|++-++|+     |+|+...|.+|++|||+|+.+.. .
T Consensus       153 y~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygs-p  230 (419)
T KOG0663|consen  153 YIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGS-P  230 (419)
T ss_pred             eeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcC-C
Confidence            999999988 9999998654 22      344667777788898888887     99999999999999999998763 3


Q ss_pred             ccccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                      ....+...-|..|.|||.+.+.. |+.+.||||+|||+.||+++++.|++...                           
T Consensus       231 ~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~  310 (419)
T KOG0663|consen  231 LKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPA  310 (419)
T ss_pred             cccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccch
Confidence            44556677799999999887654 89999999999999999999998887110                           


Q ss_pred             ------------------cc--ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------PK--TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------~~--~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        +.  ....-.+++...+.+||.+|-|+++.|+
T Consensus       311 ~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  311 VKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             hhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                              00  1245567999999999999999998774

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.3e-35  Score=246.17  Aligned_cols=216  Identities=15%  Similarity=0.158  Sum_probs=171.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|++.+.||+|+||.||+|.++  ...+..+|+|.+.               ..++.++||||+++++++..++..++
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   83 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMI   83 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEE
Confidence            357899999999999999999864  2356788988755               26667899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhc-CCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYEC-LRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~-~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+.+++|.+++... ..+++      ..++..++.++|..+++|+     ||+++.++.++++|||.+.........
T Consensus        84 v~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~  163 (266)
T cd05064          84 VTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIY  163 (266)
T ss_pred             EEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccchh
Confidence            99999999999999764 33443      3445566688888888877     899999999999999987654221111


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~  216 (266)
                      ......++..|+|||.+.+..++.++|||||||++|++++ |..||....                +......+.+++.+
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  243 (266)
T cd05064         164 TTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLD  243 (266)
T ss_pred             cccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Confidence            1112334578999999988889999999999999999775 988986411                22345667789999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ||+.+|.+||++++|++.|..+
T Consensus       244 c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         244 CWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             HcCCCchhCCCHHHHHHHHHhh
Confidence            9999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9e-36  Score=249.58  Aligned_cols=208  Identities=17%  Similarity=0.183  Sum_probs=169.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|+||.||++.++ .++..+|+|++.                .+++.++||||+++++++..++..++|||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHK-ETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CceEEEEecccCCEEEEEEEEC-CCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            6889999999999999999986 677889998654                36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.++.+..+......+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++.............
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~  160 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTE  160 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccc
Confidence            99987776555433333      344566677788888888887     8999999999999999998754322223334


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------------
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------------  204 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------------  204 (266)
                      ..++..|+|||++.+..++.++|+||||+++|+|++|+.||......                                 
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (287)
T cd07848         161 YVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFP  240 (287)
T ss_pred             cccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccC
Confidence            56899999999998888999999999999999999999998642110                                 


Q ss_pred             --------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 --------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 --------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    .....+.+++.+||+.||.+|||++++++
T Consensus       241 ~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         241 AVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             cccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                          12334778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-35  Score=254.30  Aligned_cols=206  Identities=15%  Similarity=0.201  Sum_probs=173.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|++.                 ++++.++||||+++++++......++|
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv   79 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKK-DTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLA   79 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEEC-CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEE
Confidence            36889999999999999999986 567889999764                 256678899999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++.....    ..
T Consensus        80 ~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----~~  155 (333)
T cd05600          80 MEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT----YA  155 (333)
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc----cc
Confidence            99999999999997655543      44566777788888888887     89999999999999999976532    23


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------c------cccchHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------P------KTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------~------~~~~~~~~  212 (266)
                      ....|++.|+|||.+.+..++.++|||||||++|+|++|..||.....                 .      .....+.+
T Consensus       156 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~  235 (333)
T cd05600         156 NSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWD  235 (333)
T ss_pred             CCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHH
Confidence            345689999999999888899999999999999999999999865211                 0      22567788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ++.+||..+|.+||+++++++.
T Consensus       236 li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         236 LITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             HHHHHhhChhhhcCCHHHHHhC
Confidence            9999999999999999999854

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-36  Score=252.31  Aligned_cols=205  Identities=15%  Similarity=0.123  Sum_probs=171.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||+|... .++..+|+|.+.                 .+++.++||||+++++++.+....++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDR-ISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEc-CCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            6888999999999999999975 568889998752                 3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||+.+++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++.....    ...
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~----~~~  156 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD----RTW  156 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccC----Ccc
Confidence            9999999999998765543      44556677788888888887     89999999999999999976532    122


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcC
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ...|++.|+|||.+.+..++.++|||||||++|+|++|+.||....               +......+.+++.+||+.|
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~d  236 (291)
T cd05612         157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVD  236 (291)
T ss_pred             cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCC
Confidence            3458999999999988889999999999999999999999997632               2234456789999999999


Q ss_pred             CCCCCC-----HHHHHHH
Q 042690          222 PPLRPS-----LRIVALM  234 (266)
Q Consensus       222 p~~Rps-----~~~il~~  234 (266)
                      |.+||+     ++++++.
T Consensus       237 p~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         237 RTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             HHHccCCccCCHHHHhcC
Confidence            999995     7777643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.9e-35  Score=248.02  Aligned_cols=211  Identities=18%  Similarity=0.319  Sum_probs=171.7

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++.+++|.+.+.||.|+||.||+|..+ .++..||+|.+.               .+++.++||||+++++++.+.+..+
T Consensus         1 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   79 (288)
T cd07871           1 FGKLETYVKLDKLGEGTYATVFKGRSK-LTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLT   79 (288)
T ss_pred             CCccccceEeeEEecCCCEEEEEEEEC-CCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            467889999999999999999999975 678889998654               3778899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+ +|.+++..... +      .+..++..++.++|.++++|+     ||+++.++.+||+|||++..... ..
T Consensus        80 lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~-~~  157 (288)
T cd07871          80 LVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSV-PT  157 (288)
T ss_pred             EEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccC-CC
Confidence            99999975 99998875433 2      244567777788898888887     89999999999999999976432 12


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+ ..++.++|+||+||++|+|+||+.||.....                            
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd07871         158 KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEF  237 (288)
T ss_pred             ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhh
Confidence            22234567899999998765 4688999999999999999999999864210                            


Q ss_pred             -----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.......+++.+||+.||.+|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         238 RSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                             112345678999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=6.7e-36  Score=254.86  Aligned_cols=209  Identities=16%  Similarity=0.129  Sum_probs=171.7

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -+..+|.+++.||+|+||.||+|+-+ .+|..+|+|++.+                 +|...++|+||++|-.|.+...+
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk-~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKK-DTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEc-cCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCee
Confidence            45778999999999999999999965 8999999999983                 77788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc---
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI---  149 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~---  149 (266)
                      ||||||++||++--+|.....+.      +...+..++.-+|.+|++|+     |+|||..|++||+|||++.....   
T Consensus       217 YLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~  296 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHR  296 (550)
T ss_pred             EEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhh
Confidence            99999999999999998766654      44556666688888888887     99999999999999999864321   


Q ss_pred             ------------------ccccc------c-------------------ccccCCCCcCCccccCCCCCCcccchhhHHH
Q 042690          150 ------------------NQTQT------L-------------------TGMRETKGYLPPEWFRNMPVTVKVDVYSFGV  186 (266)
Q Consensus       150 ------------------~~~~~------~-------------------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  186 (266)
                                        +....      .                   ....|||.|||||++.+..|+..+|.|||||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~  376 (550)
T KOG0605|consen  297 IESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGC  376 (550)
T ss_pred             hhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHH
Confidence                              00000      0                   1157999999999999999999999999999


Q ss_pred             HHHHHHhCCCcccCCCC-------------------ccccchHHHHHHHhhhcCCCCCCC---HHHH
Q 042690          187 MLLEIISCRCVERQGSD-------------------PKTLEKPVMIAIQFVKEKPPLRPS---LRIV  231 (266)
Q Consensus       187 i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~cl~~~p~~Rps---~~~i  231 (266)
                      |+|||+.|-+||..+.+                   .....+..++|.+|+. ||..|-.   ++||
T Consensus       377 ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EI  442 (550)
T KOG0605|consen  377 IMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEI  442 (550)
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHH
Confidence            99999999999987432                   2334566778999888 8888854   4444

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.2e-35  Score=247.31  Aligned_cols=206  Identities=22%  Similarity=0.251  Sum_probs=168.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|+..+.||+|+||.||++.+. .++..+|+|.+.                 .+++.++|+||+++++++.+++..++||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~   79 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVR-ATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEe-cCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEE
Confidence            3678899999999999999976 578889998643                 3667889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+.+++|.+++....  .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....  ...
T Consensus        80 e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~--~~~  157 (285)
T cd05631          80 TIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE--GET  157 (285)
T ss_pred             EecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC--CCe
Confidence            9999999998886432  233      33456666788888888887     89999999999999999987532  222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~  215 (266)
                      .....|+..|+|||.+.+..++.++|||||||++|+|++|+.||....                   +......+.+++.
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~  237 (285)
T cd05631         158 VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICR  237 (285)
T ss_pred             ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHH
Confidence            234568999999999998899999999999999999999999986521                   1234557788999


Q ss_pred             HhhhcCCCCCCC-----HHHHHH
Q 042690          216 QFVKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps-----~~~il~  233 (266)
                      +||+.||.+||+     ++++++
T Consensus       238 ~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         238 MLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             HHhhcCHHHhcCCCCCCHHHHhc
Confidence            999999999997     677764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.9e-35  Score=242.57  Aligned_cols=211  Identities=22%  Similarity=0.287  Sum_probs=170.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.+.||+|+||.||++.++  .+..+++|.+.             .+++.++||||+++++++......++||||
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~--~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~   80 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWR--AQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEF   80 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEec--cCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEc
Confidence            357888999999999999999985  55678888644             378899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++++|.+++.... .++      +..++..++.++|..+++|+     |++++.++.++|+|||.++............
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~  160 (256)
T cd05114          81 MENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSG  160 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCC
Confidence            99999999997532 233      34556666788888888887     8999999999999999987653222222222


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++ |+.||....                +......+.+++.+||+.
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~  240 (256)
T cd05114         161 AKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHE  240 (256)
T ss_pred             CCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccC
Confidence            334568999999988889999999999999999999 888886522                222345678999999999


Q ss_pred             CCCCCCCHHHHHHHH
Q 042690          221 KPPLRPSLRIVALML  235 (266)
Q Consensus       221 ~p~~Rps~~~il~~l  235 (266)
                      +|.+||+++++++.|
T Consensus       241 ~p~~Rps~~~l~~~l  255 (256)
T cd05114         241 KPEGRPTFAELLRAI  255 (256)
T ss_pred             CcccCcCHHHHHHhh
Confidence            999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.1e-35  Score=255.07  Aligned_cols=209  Identities=16%  Similarity=0.175  Sum_probs=174.4

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+.+|.+.+.||+|+||.||+|.++......+|+|.+.                 .+++.++||||+++++++.+.+..
T Consensus        27 ~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~  106 (340)
T PTZ00426         27 MKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYL  106 (340)
T ss_pred             CChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEE
Confidence            356789999999999999999999764455789998653                 367788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+.+|+|.+++.....+.      +..++..++.++|..+++|+     |||++.++.++|+|||++.....   
T Consensus       107 ~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~---  183 (340)
T PTZ00426        107 YLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT---  183 (340)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC---
Confidence            99999999999999998765543      44566677788888888887     89999999999999999986532   


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                       ......||+.|+|||++.+..++.++|+|||||++|+|++|..||....               +......+.+++.+|
T Consensus       184 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~  262 (340)
T PTZ00426        184 -RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGIIYFPKFLDNNCKHLMKKL  262 (340)
T ss_pred             -CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence             1234568999999999988888999999999999999999999997622               233455677899999


Q ss_pred             hhcCCCCCC-----CHHHHHH
Q 042690          218 VKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rp-----s~~~il~  233 (266)
                      ++.+|.+|+     +++++++
T Consensus       263 l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        263 LSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             cccCHHHcCCCCCCCHHHHHc
Confidence            999999995     7888764

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1e-35  Score=253.55  Aligned_cols=202  Identities=16%  Similarity=0.140  Sum_probs=168.0

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||++... .++..+|+|.+.                 .+++.++||||+++++++..++..++||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREK-ATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence            46899999999999976 678889999664                 266788999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           93 RSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        93 ~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      ++|.+++.....+..      ..++..++.++|.++++|+     ||+++.++.++|+|||+++.... .........||
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~-~~~~~~~~~gt  158 (323)
T cd05571          80 GELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS-DGATMKTFCGT  158 (323)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCccccc-CCCcccceecC
Confidence            999999986655443      3566677788998888888     89999999999999999875321 12222345689


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhhcCCCCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                      +.|+|||++.+..++.++|+|||||++|+|++|+.||...               .+......+.+++.+||+.||.+||
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~  238 (323)
T cd05571         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRL  238 (323)
T ss_pred             ccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcC
Confidence            9999999999888999999999999999999999999652               1234556788999999999999999


Q ss_pred             -----CHHHHHH
Q 042690          227 -----SLRIVAL  233 (266)
Q Consensus       227 -----s~~~il~  233 (266)
                           ++.++++
T Consensus       239 ~~~~~~~~~ll~  250 (323)
T cd05571         239 GGGPEDAKEIME  250 (323)
T ss_pred             CCCCCCHHHHHc
Confidence                 7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=246.91  Aligned_cols=203  Identities=14%  Similarity=0.209  Sum_probs=162.7

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEe----CCeEEEEEE
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIE----QECRLLVYK   88 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~----~~~~~lv~e   88 (266)
                      ..||+|+++.||+|.+   +++.||+|++.                 .++++++||||+++++++.+    ....++|||
T Consensus        26 ~~i~~g~~~~v~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         26 VLIKENDQNSIYKGIF---NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             eEEeeCCceEEEEEEE---CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEE
Confidence            5789999999999997   67889998764                 37788999999999999876    346889999


Q ss_pred             cCCCCCHHHHHhhcCCCCHHHHH------HHHHHHhhh-cCccc-----cceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLRPTWQQRM------QDCIRDCWR-TRALA-----CRILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~l------~~~~~~~~~-~~~~h-----~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+.+|+|.+++.....+++...+      ..++..+|. .+..|     .|++++.++.+||+|||+++.....    ..
T Consensus       103 y~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~----~~  178 (283)
T PHA02988        103 YCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSP----PF  178 (283)
T ss_pred             eCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccc----cc
Confidence            99999999999876665544333      333455553 24444     4899999999999999998765321    12


Q ss_pred             cccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHHHh
Q 042690          157 GMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~~c  217 (266)
                      ...++..|+|||.+.+  ..++.++||||||+++|+|++|+.||....                 +......+.+++.+|
T Consensus       179 ~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~c  258 (283)
T PHA02988        179 KNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEAC  258 (283)
T ss_pred             cccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHH
Confidence            3457889999999875  578999999999999999999999997621                 123456778999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~  239 (266)
                      |+.||.+||++.++++.|+...
T Consensus       259 l~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        259 TSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             hcCCcccCcCHHHHHHHHHHHH
Confidence            9999999999999999988654

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=4.2e-35  Score=250.63  Aligned_cols=208  Identities=15%  Similarity=0.164  Sum_probs=168.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+|++.+.||+|+||.||++.+. .++..+|+|.+.               ++++.++||||+++++++..++..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHK-PSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEEC-CCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEe
Confidence            357899999999999999999976 677788888653               3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++.....+.      +..++..++.++|+. +++|+     ||+++.++.++|+|||++.....   ...
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---~~~  159 (331)
T cd06649          83 EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMA  159 (331)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccc---ccc
Confidence            9999999999998655543      334455555666643 35554     99999999999999999876532   122


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ....++..|+|||++.+..++.++|+|||||++|+|+||+.||.....                                
T Consensus       160 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (331)
T cd06649         160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRP  239 (331)
T ss_pred             ccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCccccccccc
Confidence            345689999999999988899999999999999999999999853110                                


Q ss_pred             -------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 -------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 -------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                     ......+.+++.+||+.||.+||+++++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h  301 (331)
T cd06649         240 VSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNH  301 (331)
T ss_pred             ccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                           0123467789999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.8e-35  Score=243.22  Aligned_cols=214  Identities=22%  Similarity=0.311  Sum_probs=174.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +..+|.+.++||+|++|.||+|...  ++..+++|.+.             .+++.++|+||+++++.+...+..+++||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYN--NSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITE   81 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEec--CCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEe
Confidence            3568999999999999999999974  55678888654             37788899999999999998889999999


Q ss_pred             cCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++++|.+++....  .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (261)
T cd05072          82 YMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAR  161 (261)
T ss_pred             cCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceecc
Confidence            999999999997532  22      244566677788888888876     89999999999999999987543222222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++|+||||+++|+|+| |..||....                .......+.+++.+|+
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  241 (261)
T cd05072         162 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCW  241 (261)
T ss_pred             CCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            23345678999999888888999999999999999998 888886421                1224467889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~  237 (266)
                      ..+|.+||+++++++.|+.
T Consensus       242 ~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         242 KEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             cCCcccCcCHHHHHHHHhc
Confidence            9999999999999999875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=5.4e-35  Score=246.98  Aligned_cols=213  Identities=18%  Similarity=0.207  Sum_probs=169.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC---------------CCcceeeeeeHH---------------HHhhhcCCCceeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP---------------GDKTNIGVKKLD---------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~---------------~~~~~vaiK~~~---------------~~l~~~~h~~iv~~   73 (266)
                      ++|.+.++||+|+||.||++.+..               +.+..||+|.+.               .+++.++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            478899999999999999998632               234468998754               26778899999999


Q ss_pred             eeEEEeCCeEEEEEEcCCCCCHHHHHhhcCC-------------------------CCHHHHHHHHHHHhhhcCcccc--
Q 042690           74 LGYHIEQECRLLVYKFMHNRSISSLLYECLR-------------------------PTWQQRMQDCIRDCWRTRALAC--  126 (266)
Q Consensus        74 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-------------------------~~~~~~l~~~~~~~~~~~~~h~--  126 (266)
                      ++++...+..++||||+.+++|.+++.....                         ..+..++..++.++|..+++|+  
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dl  164 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDL  164 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCc
Confidence            9999998999999999999999999864321                         1355667777788888888887  


Q ss_pred             ---ceeecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhC--CCcccC
Q 042690          127 ---RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISC--RCVERQ  200 (266)
Q Consensus       127 ---nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg--~~p~~~  200 (266)
                         ||+++.++.++|+|||+++........ ......++..|+|||.+.+..++.++|+||||+++|+|+++  ..||..
T Consensus       165 kp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~  244 (304)
T cd05096         165 ATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGE  244 (304)
T ss_pred             chhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCc
Confidence               899999999999999999865322221 11223457789999998888899999999999999999874  446653


Q ss_pred             CC-----------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          201 GS-----------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       201 ~~-----------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ..                       ++.....+.+++.+||+.+|.+||++.+|.+.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~  303 (304)
T cd05096         245 LTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT  303 (304)
T ss_pred             CCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence            11                       1233456889999999999999999999998876

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=3.2e-35  Score=245.71  Aligned_cols=216  Identities=21%  Similarity=0.309  Sum_probs=174.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCC----CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPG----DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~----~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      +++|++.+.||+|++|.||+|.....    ....+++|.+.               ..++.++||||+++++++......
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPT   83 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCce
Confidence            45788999999999999999986421    22568888764               267788999999999999988889


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC----------------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEE
Q 042690           84 LLVYKFMHNRSISSLLYECLR----------------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~  136 (266)
                      +++|||+++++|.+++.....                      ..+..++..++.++|..+++|+     ||++++++.+
T Consensus        84 ~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~  163 (283)
T cd05048          84 CMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTV  163 (283)
T ss_pred             EEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcE
Confidence            999999999999999975421                      1255667777788888888876     8999999999


Q ss_pred             EEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC--------------
Q 042690          137 ETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ--------------  200 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~--------------  200 (266)
                      +|+|||++........ .......+++.|+|||.+.+..++.++|+||||+++|+|++ |..||..              
T Consensus       164 ~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~  243 (283)
T cd05048         164 KISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQ  243 (283)
T ss_pred             EECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC
Confidence            9999999986532221 12223456788999999888889999999999999999998 8888864              


Q ss_pred             --CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          201 --GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       201 --~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                        ..+...+..+.+++.+||+.||.+||++.+|++.|+++
T Consensus       244 ~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         244 LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence              11234557888999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.5e-35  Score=255.86  Aligned_cols=217  Identities=20%  Similarity=0.239  Sum_probs=172.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      ..+|.+.+.||+|+||.||+|.+.    ..+...||+|.+.               .+++.+ +|+||+++++++.....
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            457999999999999999999863    1234579999764               256667 79999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC-----------------------------------------------------------
Q 042690           83 RLLVYKFMHNRSISSLLYECL-----------------------------------------------------------  103 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~-----------------------------------------------------------  103 (266)
                      .++||||+.+|+|.+++....                                                           
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD  196 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence            999999999999999986421                                                           


Q ss_pred             -----------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc-ccccC
Q 042690          104 -----------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL-TGMRE  160 (266)
Q Consensus       104 -----------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~-~~~~~  160 (266)
                                 .      ..+..++..++.++|..+++|+     ||++++++.++|+|||+++.......... ....+
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~  276 (374)
T cd05106         197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARL  276 (374)
T ss_pred             ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCC
Confidence                       0      1234566677788888888887     89999999999999999976532222111 12234


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHhhhcCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      +..|||||++.+..++.++||||||+++|+|++ |+.||....                 +......+.+++.+||+.||
T Consensus       277 ~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp  356 (374)
T cd05106         277 PVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEP  356 (374)
T ss_pred             ccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCCh
Confidence            567999999988889999999999999999997 998886521                 12235678899999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 042690          223 PLRPSLRIVALMLQSIL  239 (266)
Q Consensus       223 ~~Rps~~~il~~l~~~~  239 (266)
                      .+||++.+++++|+++.
T Consensus       357 ~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         357 TERPTFSQISQLIQRQL  373 (374)
T ss_pred             hhCcCHHHHHHHHHHHh
Confidence            99999999999998763

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=3.4e-35  Score=255.17  Aligned_cols=216  Identities=19%  Similarity=0.211  Sum_probs=171.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      ..+|.+.+.||+|+||.||+|.+.    ..++..||+|++.               .+++.+ +||||+++++++...+.
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            347999999999999999999752    2456689999864               255566 79999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC----------------------------------------------------------
Q 042690           83 RLLVYKFMHNRSISSLLYECLR----------------------------------------------------------  104 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~----------------------------------------------------------  104 (266)
                      .++||||+++|+|.+++.+...                                                          
T Consensus       114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS  193 (375)
T ss_pred             ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence            9999999999999999964321                                                          


Q ss_pred             -----------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc-
Q 042690          105 -----------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL-  155 (266)
Q Consensus       105 -----------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~-  155 (266)
                                       +      .+..++..++.++|..+++|+     ||+++.++.++|+|||+++.......... 
T Consensus       194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~  273 (375)
T cd05104         194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVK  273 (375)
T ss_pred             ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCccccccc
Confidence                             1      233466667788888888877     89999999999999999986543222111 


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~c  217 (266)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++ |..||....                 +......+.+++.+|
T Consensus       274 ~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c  353 (375)
T cd05104         274 GNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSC  353 (375)
T ss_pred             CCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHH
Confidence            12334567999999988889999999999999999998 777875421                 122345678999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~  238 (266)
                      |+.||.+||++.++++.|+..
T Consensus       354 l~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         354 WDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             ccCChhHCcCHHHHHHHHHhh
Confidence            999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=8.5e-35  Score=253.64  Aligned_cols=208  Identities=15%  Similarity=0.158  Sum_probs=170.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCH
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSI   95 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L   95 (266)
                      ..|.+.+.||+|+||.||++... .+++.||+|...        .+++.++||||+++++++......++|||++. ++|
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~-~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L  169 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDN-KTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDL  169 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEEC-CCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCH
Confidence            46999999999999999999975 678889999754        58899999999999999999999999999996 589


Q ss_pred             HHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCc
Q 042690           96 SSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGY  164 (266)
Q Consensus        96 ~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y  164 (266)
                      ..++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++...............||+.|
T Consensus       170 ~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y  249 (391)
T PHA03212        170 YCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIAT  249 (391)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCC
Confidence            99887655543      44566677788888888887     89999999999999999975432222233345789999


Q ss_pred             CCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------c-------------------
Q 042690          165 LPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------P-------------------  204 (266)
Q Consensus       165 ~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------~-------------------  204 (266)
                      +|||++.+..++.++|||||||++|+|+||..|+.....                     +                   
T Consensus       250 ~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  329 (391)
T PHA03212        250 NAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLA  329 (391)
T ss_pred             CChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHH
Confidence            999999888899999999999999999999976542110                     0                   


Q ss_pred             -----------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 -----------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 -----------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       .....+.+++.+||+.||.+|||++|+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        330 KKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             hccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence                             01235667999999999999999999985

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1e-35  Score=246.48  Aligned_cols=206  Identities=15%  Similarity=0.256  Sum_probs=181.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|++.+.||+|.||+|-+|..+ ..++.||||-++                 ++|..++||||+.+|.+|++...+++||
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~-~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEH-KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhc-cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            6889999999999999999865 688999998776                 3889999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||..+|.|.+|+.+.+.++      +.+++..++.+||.+++.|+     |||+|+|+++|++|||++.++..  ..-..
T Consensus       133 EYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~--~kfLq  210 (668)
T KOG0611|consen  133 EYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYAD--KKFLQ  210 (668)
T ss_pred             EecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhcc--ccHHH
Confidence            9999999999999877754      55778888899999999998     99999999999999999988753  33445


Q ss_pred             cccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCC--------------CccccchHHHHHHHhhhcC
Q 042690          157 GMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGS--------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~--------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ..+|++.|.+||.+.|.+| .+..|.||||+++|.|+.|..||.+..              .+..+.....+|+.||-.|
T Consensus       211 TFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVN  290 (668)
T KOG0611|consen  211 TFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPETPSDASGLIRWMLMVN  290 (668)
T ss_pred             HhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCCCchHHHHHHHHHhcC
Confidence            6889999999999999887 578999999999999999999998722              3444555667999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |++|.+++||..
T Consensus       291 P~RRATieDiAs  302 (668)
T KOG0611|consen  291 PERRATIEDIAS  302 (668)
T ss_pred             cccchhHHHHhh
Confidence            999999999864

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=6.4e-35  Score=246.46  Aligned_cols=211  Identities=19%  Similarity=0.250  Sum_probs=169.6

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +|...+|.+.+.||+|+||.||+|... .++..+|+|.+.               .+++.++||||+++++++.++...+
T Consensus         1 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   79 (303)
T cd07869           1 FGKADSYEKLEKLGEGSYATVYKGKSK-VNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLT   79 (303)
T ss_pred             CCccccceEeeeEEecCCEEEEEEEEC-CCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEE
Confidence            466788999999999999999999975 577889999764               3778889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+. ++|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++..... ..
T Consensus        80 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~-~~  157 (303)
T cd07869          80 LVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSV-PS  157 (303)
T ss_pred             EEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccC-CC
Confidence            9999996 58888876542 22      344567777788888888887     89999999999999999875432 12


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------  204 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------  204 (266)
                      .......+++.|+|||++.+ ..++.++|+||+||++|+|++|..||......                           
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T cd07869         158 HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPH  237 (303)
T ss_pred             ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccc
Confidence            22334567899999998765 45788999999999999999999998641100                           


Q ss_pred             ---------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ---------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ---------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                           .....+.+++.+||+.||.+|||++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         238 FKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                                 01234668999999999999999998874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-35  Score=249.70  Aligned_cols=199  Identities=19%  Similarity=0.175  Sum_probs=163.9

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||+|+||.||++.+. .++..+|+|.+.                 .+++.++||||+++++++..++..++||||+++++
T Consensus         1 lg~G~~g~Vy~~~~~-~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKR-DTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            699999999999976 567889999653                 26778899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      |.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||+++..... ........||+.
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~  158 (312)
T cd05585          80 LFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKD-DDKTNTFCGTPE  158 (312)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccC-CCccccccCCcc
Confidence            999997665544      33456667788888888887     899999999999999999754321 222234568999


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCCCC-
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLRPS-  227 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~Rps-  227 (266)
                      |+|||++.+..++.++|||||||++|+|++|+.||....               +......+.+++.+||+.||.+||+ 
T Consensus       159 y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~  238 (312)
T cd05585         159 YLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY  238 (312)
T ss_pred             cCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCC
Confidence            999999998889999999999999999999999986521               2334567788999999999999986 


Q ss_pred             --HHHHH
Q 042690          228 --LRIVA  232 (266)
Q Consensus       228 --~~~il  232 (266)
                        +.+++
T Consensus       239 ~~~~e~l  245 (312)
T cd05585         239 NGAQEIK  245 (312)
T ss_pred             CCHHHHH
Confidence              45554

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=4.3e-35  Score=249.87  Aligned_cols=205  Identities=17%  Similarity=0.155  Sum_probs=167.4

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------HhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------VVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      |.+.+.||+|+||.||+|.+. .++..||+|.+..                    .++.++||||+++++++...+..++
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~l   79 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYK-KTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCF   79 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEE
Confidence            567899999999999999976 6788899997641                    1235679999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+++++|..++... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...... ...
T Consensus        80 v~E~~~~~~L~~~~~~~-~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~-~~~  157 (324)
T cd05589          80 VMEYAAGGDLMMHIHTD-VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGF-GDR  157 (324)
T ss_pred             EEcCCCCCcHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCC-CCc
Confidence            99999999999888643 33      355667777788998898888     899999999999999998753221 222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~  219 (266)
                      .....|++.|+|||.+.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+||+
T Consensus       158 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~  237 (324)
T cd05589         158 TSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSREAISIMRRLLR  237 (324)
T ss_pred             ccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhh
Confidence            234568999999999988889999999999999999999999997522               23345667889999999


Q ss_pred             cCCCCCC-----CHHHHHH
Q 042690          220 EKPPLRP-----SLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rp-----s~~~il~  233 (266)
                      .||.+||     ++.++++
T Consensus       238 ~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         238 RNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             cCHhHcCCCCCCCHHHHhh
Confidence            9999999     4666654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1e-34  Score=240.25  Aligned_cols=215  Identities=22%  Similarity=0.299  Sum_probs=173.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ..+|.+.+.||+|++|.||+|.+. ..+..+++|...             +.++.++||||+++++++..++..+++|||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWK-KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEe-cCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            457889999999999999999986 567788998754             367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +.+++|.+++....  .+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++............
T Consensus        84 ~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~  163 (263)
T cd05052          84 MTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA  163 (263)
T ss_pred             CCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccC
Confidence            99999999997532  233      33556666677887777776     899999999999999999875432221212


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~  219 (266)
                      ....+..|+|||.+.+..++.++||||||+++|+|++ |..|+..                ..+...+..+.+++.+||+
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  243 (263)
T cd05052         164 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQ  243 (263)
T ss_pred             CCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcc
Confidence            2234567999999888889999999999999999998 8888754                1123344678889999999


Q ss_pred             cCCCCCCCHHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~~  238 (266)
                      .+|++||++.+++++|+.+
T Consensus       244 ~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         244 WNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCcccCCCHHHHHHHHHhh
Confidence            9999999999999999865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-36  Score=263.54  Aligned_cols=235  Identities=19%  Similarity=0.248  Sum_probs=195.4

Q ss_pred             CCchhhhhhHhc--ccCceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCce
Q 042690           10 ADPSQYENRVFG--SFSHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNL   70 (266)
Q Consensus        10 ~~~~~~~~~~~~--~~~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~i   70 (266)
                      +||.+....+.-  +.+.+++.+.||.|.||.|++|+.+..  ....||||.++               .+|-+++||||
T Consensus       613 EDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNI  692 (996)
T KOG0196|consen  613 EDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNI  692 (996)
T ss_pred             cCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcE
Confidence            677777766653  455799999999999999999998632  45668999998               28889999999


Q ss_pred             eeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           71 VCLLGYHIEQECRLLVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        71 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      +++.|+.......+||+|||++|+|..+++.+.. +.      ..+.+...++++..++++|+     ||||+.+..+|+
T Consensus       693 IrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKV  772 (996)
T KOG0196|consen  693 IRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKV  772 (996)
T ss_pred             EEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEe
Confidence            9999999999999999999999999999996543 33      23445566688888888887     999999999999


Q ss_pred             eecCcceeecccccc--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC---------------
Q 042690          139 SDLGLAKLLMINQTQ--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ---------------  200 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~---------------  200 (266)
                      +|||+++.+..+...  ...+.+-..+|.|||.+....++.++||||+|+++||+++ |+.|+=+               
T Consensus       773 sDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gyR  852 (996)
T KOG0196|consen  773 SDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGYR  852 (996)
T ss_pred             ccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHHHHHHHhccC
Confidence            999999987544322  2222344678999999999999999999999999999885 8888754               


Q ss_pred             -CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          201 -GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       201 -~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                       ..+.+.+..+.+|+..||+.|-..||.+.+|+.+|+++...|..
T Consensus       853 LPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~S  897 (996)
T KOG0196|consen  853 LPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNS  897 (996)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchh
Confidence             45677788899999999999999999999999999999877753

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=2.5e-35  Score=254.20  Aligned_cols=211  Identities=17%  Similarity=0.169  Sum_probs=170.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .+++|...+.||+|+||.||++.+. .+++.||+|.+.               ++++.++|+||+++++++...+..++|
T Consensus        72 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  150 (353)
T PLN00034         72 SLSELERVNRIGSGAGGTVYKVIHR-PTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVL  150 (353)
T ss_pred             CHHHHhhhhhccCCCCeEEEEEEEC-CCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEE
Confidence            4667888999999999999999975 568899999763               377788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc--CCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           87 YKFMHNRSISSLLYEC--LRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~--~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |||+++++|.+.....  ....+..++..++.++|.++++|+     ||+++.++.++|+|||++...... ........
T Consensus       151 ~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~-~~~~~~~~  229 (353)
T PLN00034        151 LEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT-MDPCNSSV  229 (353)
T ss_pred             EecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccc-cccccccc
Confidence            9999999987643211  113466778888899998888888     899999999999999999875422 11223456


Q ss_pred             CCCCcCCccccCC-----CCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHH
Q 042690          160 ETKGYLPPEWFRN-----MPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       160 ~~~~y~aPE~~~~-----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~  215 (266)
                      |+..|+|||.+..     ...+.++|||||||++|+|++|+.||....                   +......+.+++.
T Consensus       230 gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  309 (353)
T PLN00034        230 GTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFIS  309 (353)
T ss_pred             cCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHH
Confidence            8999999998742     234568999999999999999999986311                   2234457889999


Q ss_pred             HhhhcCCCCCCCHHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~  234 (266)
                      +||+.||.+||++.|+++.
T Consensus       310 ~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        310 CCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             HHccCChhhCcCHHHHhcC
Confidence            9999999999999999864

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=6e-35  Score=253.22  Aligned_cols=212  Identities=15%  Similarity=0.135  Sum_probs=172.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +..+|.+.+.||+|+||.||++... .++..+|+|.+.                 .+++.++||||+++++++.++...+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHK-SSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            4567999999999999999999976 678889999753                 2667889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      +||||+++|+|.+++.....     ..+..++..++.++|.++++|+     ||+++.++.++|+|||++..........
T Consensus       120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~  199 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVR  199 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCccc
Confidence            99999999999999875321     2244567777889998888888     8999999999999999998754322222


Q ss_pred             cccccCCCCcCCccccCCC----CCCcccchhhHHHHHHHHHhCCCcccCCC-----------------C--ccccchHH
Q 042690          155 LTGMRETKGYLPPEWFRNM----PVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D--PKTLEKPV  211 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~----~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~--~~~~~~~~  211 (266)
                      .....||+.|+|||.+.+.    .++.++|+|||||++|+|++|+.||....                 +  ...+..+.
T Consensus       200 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~  279 (370)
T cd05596         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAK  279 (370)
T ss_pred             CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHH
Confidence            3345689999999987643    37889999999999999999999987621                 1  12456778


Q ss_pred             HHHHHhhhcCCCC--CCCHHHHHHH
Q 042690          212 MIAIQFVKEKPPL--RPSLRIVALM  234 (266)
Q Consensus       212 ~l~~~cl~~~p~~--Rps~~~il~~  234 (266)
                      +++.+||+.+|.+  ||+++++++.
T Consensus       280 ~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         280 DLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             HHHHHHccChhhccCCCCHHHHhcC
Confidence            8999999988987  9999999653

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-35  Score=240.02  Aligned_cols=219  Identities=16%  Similarity=0.216  Sum_probs=180.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe-----CCeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE-----QECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~-----~~~~   83 (266)
                      .|..++.||.|+||.|..+..+ .++..||||++.                ++++.++|+||+.+++++..     -+..
T Consensus        23 ~y~~~~~iG~GAyGvVcsA~~~-~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   23 YYVLIEPIGRGAYGVVCSAKDK-RTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             eecccccccCcceeeEEEEEEc-CCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            4555799999999999999976 678999999987                37888999999999999865     2468


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-  151 (266)
                      |+|+|+|+. +|.+.++....++      +..++..+++++|+.+++|+     |++++.+-.+|++|||+|+...... 
T Consensus       102 YiV~elMet-DL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~  180 (359)
T KOG0660|consen  102 YLVFELMET-DLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFE  180 (359)
T ss_pred             EEehhHHhh-HHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccCc
Confidence            999999955 9999999776443      44667777799999999988     9999999999999999999875331 


Q ss_pred             ccccccccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------------  202 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------------  202 (266)
                      ....+...-|..|.|||.+. ...|+.+.||||+|||+.||++|++.|++..                            
T Consensus       181 ~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~a  260 (359)
T KOG0660|consen  181 DGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKA  260 (359)
T ss_pred             ccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHH
Confidence            22335677899999999654 5679999999999999999999999888811                            


Q ss_pred             ------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH--HHHHHHhCCCCC
Q 042690          203 ------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL--MLQSILEVPSPP  245 (266)
Q Consensus       203 ------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~~~~~~  245 (266)
                                        -+...+..++++.+||..||.+|+|++|.++  .|..+-.+...|
T Consensus       261 r~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~dEP  323 (359)
T KOG0660|consen  261 RPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPEDEP  323 (359)
T ss_pred             HHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCccCC
Confidence                              1234456677999999999999999999984  588886665544

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=3.3e-35  Score=242.89  Aligned_cols=209  Identities=24%  Similarity=0.316  Sum_probs=164.3

Q ss_pred             eeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ++.+.||.|+||.||+|.++   ...+..|++|.+.               +.++.++||||++++|++...+..++|||
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e   81 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVME   81 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccc
Confidence            56789999999999999986   3457778999884               26778899999999999998888999999


Q ss_pred             cCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc-cccc
Q 042690           89 FMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN-QTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~-~~~~  154 (266)
                      |+++|+|.+++...  ..++      +..++..++.++|..+++|.     ||+++.++.+||+|||++...... ....
T Consensus        82 ~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~  161 (259)
T PF07714_consen   82 YCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKN  161 (259)
T ss_dssp             --TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999876  3443      44556666788888888887     799999999999999999876321 1122


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~c  217 (266)
                      .........|+|||.+.+..++.++||||||+++||+++ |+.|+..                ..+......+.+++.+|
T Consensus       162 ~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C  241 (259)
T PF07714_consen  162 DSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQC  241 (259)
T ss_dssp             STTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccchhHHHHHHHHHH
Confidence            233456778999999888789999999999999999999 6678865                12233466788999999


Q ss_pred             hhcCCCCCCCHHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALML  235 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l  235 (266)
                      |+.+|.+||++.++++.|
T Consensus       242 ~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  242 WSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             T-SSGGGS--HHHHHHHH
T ss_pred             cCCChhhCcCHHHHHhcC
Confidence            999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.2e-34  Score=253.00  Aligned_cols=220  Identities=19%  Similarity=0.199  Sum_probs=174.6

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcC-CCceeeeeeEEEeC
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAH-HKNLVCLLGYHIEQ   80 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~-h~~iv~~~~~~~~~   80 (266)
                      .+-..|.+.+.||+|+||.||+|.+..    .....||+|++.               ++++.+. ||||+++++++...
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            345688899999999999999998631    223468999775               2566775 99999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC--------------------------------------------------------
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR--------------------------------------------------------  104 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~--------------------------------------------------------  104 (266)
                      +..++|||||++|+|.+++.....                                                        
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            999999999999999999864210                                                        


Q ss_pred             ----------------------------------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690          105 ----------------------------------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus       105 ----------------------------------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                                                              +      .+..++..++.++|..+++|+     ||+++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~  273 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQG  273 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCC
Confidence                                                    1      133456677788888888887     8999999


Q ss_pred             CEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC---------
Q 042690          134 FTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS---------  202 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~---------  202 (266)
                      +.++|+|||+++........ ......++..|+|||.+.+..++.++||||||+++|+|++ |..||....         
T Consensus       274 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~  353 (400)
T cd05105         274 KIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKI  353 (400)
T ss_pred             CEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHH
Confidence            99999999999865432221 1223446778999999988889999999999999999997 888875411         


Q ss_pred             --------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          203 --------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       203 --------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                              +......+.+++.+||+.+|++||++.++.++|+.+.+
T Consensus       354 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         354 KSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             hcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence                    22344567899999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=5.7e-35  Score=249.00  Aligned_cols=202  Identities=17%  Similarity=0.162  Sum_probs=167.0

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||++... .++..||+|.+.                 .+++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREK-ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCC
Confidence            46899999999999975 678889999753                 367788999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      ++|..++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... .........|+
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~-~~~~~~~~~gt  158 (323)
T cd05595          80 GELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-DGATMKTFCGT  158 (323)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccC-CCCccccccCC
Confidence            99999987655544      34556677788888888887     89999999999999999875321 12222345689


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                      +.|+|||.+.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+||+.||.+||
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~  238 (323)
T cd05595         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRL  238 (323)
T ss_pred             cCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhC
Confidence            99999999988889999999999999999999999986521               234456778999999999999998


Q ss_pred             -----CHHHHHH
Q 042690          227 -----SLRIVAL  233 (266)
Q Consensus       227 -----s~~~il~  233 (266)
                           ++.++++
T Consensus       239 ~~~~~~~~~~l~  250 (323)
T cd05595         239 GGGPSDAKEVME  250 (323)
T ss_pred             CCCCCCHHHHHc
Confidence                 7887764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=2.8e-35  Score=240.89  Aligned_cols=209  Identities=18%  Similarity=0.234  Sum_probs=176.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCc-eeeeeeEEEeCC----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKN-LVCLLGYHIEQE----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~-iv~~~~~~~~~~----   81 (266)
                      +..|..+++||+|+||+||+|+.+ .+++.||+|++.                .+++.++|+| |+++++++.+.+    
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~-~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~   88 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSK-RTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRG   88 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEe-cCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccc
Confidence            456777889999999999999986 677999999886                3888999999 999999998876    


Q ss_pred             --eEEEEEEcCCCCCHHHHHhhcCC----------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           82 --CRLLVYKFMHNRSISSLLYECLR----------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        82 --~~~lv~e~~~~~~L~~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                        .+++|+||++. +|.+++.....          ..+..++..++++||+++++|+     |++|+.+|.+||+|||+|
T Consensus        89 ~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   89 IGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             cceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchH
Confidence              78999999977 99999986552          3577888899999999999998     999999999999999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC---------------------
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------  202 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------  202 (266)
                      +.... +.....+...|..|.|||++.+. .|+...||||+|||+.||+++++.|+++.                     
T Consensus       168 ra~~i-p~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp  246 (323)
T KOG0594|consen  168 RAFSI-PMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWP  246 (323)
T ss_pred             HHhcC-CcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCC
Confidence            96542 33345567789999999988776 68999999999999999999999888711                     


Q ss_pred             ------------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 ------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 ------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                              .+.......+++.+|++++|.+|.|++..+..
T Consensus       247 ~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h  302 (323)
T KOG0594|consen  247 GVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTH  302 (323)
T ss_pred             CccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcC
Confidence                                    01112467789999999999999999988764

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-35  Score=262.09  Aligned_cols=219  Identities=17%  Similarity=0.251  Sum_probs=173.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcC-CCceeeeeeEE-Ee---CC---
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAH-HKNLVCLLGYH-IE---QE---   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~-h~~iv~~~~~~-~~---~~---   81 (266)
                      .++.+.+.|.+|||+.||.|... +.+..+|+|++.              ++|+.++ |+|||.++|.. ..   .+   
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~-~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDV-KGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEec-CCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            36889999999999999999986 344889999876              4889998 99999999932 21   22   


Q ss_pred             eEEEEEEcCCCCCHHHHHhhc--CCCCHHHHHHHHH------HHhhhcC--cccc-----ceeecCCCEEEEeecCccee
Q 042690           82 CRLLVYKFMHNRSISSLLYEC--LRPTWQQRMQDCI------RDCWRTR--ALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~l~~~~------~~~~~~~--~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      +++|.||||.+|.|-++|..+  .+++..+.|+|..      ..+|...  ++|+     |+||+++|.+||||||.+..
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt  195 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATT  195 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCccccccc
Confidence            578999999999999999843  3466665555554      4444333  4444     99999999999999999986


Q ss_pred             ecccccccc--------ccccCCCCcCCcccc---CCCCCCcccchhhHHHHHHHHHhCCCcccCC-------------C
Q 042690          147 LMINQTQTL--------TGMRETKGYLPPEWF---RNMPVTVKVDVYSFGVMLLEIISCRCVERQG-------------S  202 (266)
Q Consensus       147 ~~~~~~~~~--------~~~~~~~~y~aPE~~---~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------~  202 (266)
                      .........        -...-|+.|.|||++   .+.++++++|||+|||++|.|+....||.+.             .
T Consensus       196 ~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~  275 (738)
T KOG1989|consen  196 KILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPP  275 (738)
T ss_pred             ccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCC
Confidence            543221111        114579999999975   4778999999999999999999999999873             2


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      .+.++..+.+||+.||+.||.+||++-+++..+..+...+-
T Consensus       276 ~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~  316 (738)
T KOG1989|consen  276 FPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPC  316 (738)
T ss_pred             CccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCC
Confidence            35788899999999999999999999999999888876543

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=7.6e-35  Score=248.74  Aligned_cols=203  Identities=15%  Similarity=0.157  Sum_probs=167.8

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||++... .++..+|+|.+.                 .+++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREK-ASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            46899999999999975 678899999764                 267788999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      ++|..++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||+++.... .........||
T Consensus        80 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~-~~~~~~~~~gt  158 (328)
T cd05593          80 GELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT-DAATMKTFCGT  158 (328)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCC-cccccccccCC
Confidence            99999987655544      34556677788888888887     89999999999999999875322 12222345689


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                      +.|+|||.+.+..++.++|||||||++|+|++|+.||....               +......+.+++.+||+.||.+||
T Consensus       159 ~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~  238 (328)
T cd05593         159 PEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRL  238 (328)
T ss_pred             cCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcC
Confidence            99999999988889999999999999999999999996522               233456788999999999999997


Q ss_pred             -----CHHHHHHH
Q 042690          227 -----SLRIVALM  234 (266)
Q Consensus       227 -----s~~~il~~  234 (266)
                           ++.++++.
T Consensus       239 ~~~~~~~~~il~h  251 (328)
T cd05593         239 GGGPDDAKEIMRH  251 (328)
T ss_pred             CCCCCCHHHHhcC
Confidence                 78888753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1.2e-34  Score=243.22  Aligned_cols=206  Identities=17%  Similarity=0.212  Sum_probs=163.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhh---hcCCCceeeeeeEEEe-----C
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVH---VAHHKNLVCLLGYHIE-----Q   80 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~---~~~h~~iv~~~~~~~~-----~   80 (266)
                      +|.+.+.||+|+||.||+|.+....+..+|+|.+.                .+++   .++||||+++++++..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            68889999999999999999754567889998664                1233   4479999999999852     3


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHNRSISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      ...++||||+. ++|.+++....  .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||++...
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~  160 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY  160 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEec
Confidence            46899999997 59999986532  1      2345566677788888888887     899999999999999999865


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------------
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------  203 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------  203 (266)
                      ...  .......++..|+|||.+.+..++.++||||||+++|+|++|++||.....                        
T Consensus       161 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  238 (290)
T cd07862         161 SFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVA  238 (290)
T ss_pred             cCC--cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhc
Confidence            322  223345679999999999888899999999999999999999999865211                        


Q ss_pred             ------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        +.....+.+++.+||+.||.+||++.++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         239 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             ccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence                              122334568999999999999999999884

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=2.1e-34  Score=240.92  Aligned_cols=216  Identities=20%  Similarity=0.275  Sum_probs=173.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++.|++.+.||+|+||.||+|.+.   ...+..+++|.+.               .+++.++||||+++++++......+
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~   83 (283)
T cd05090           4 LSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVC   83 (283)
T ss_pred             hhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceE
Confidence            567899999999999999999852   1355778888775               3778889999999999999989999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-----------------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEE
Q 042690           85 LVYKFMHNRSISSLLYECLR-----------------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~  136 (266)
                      ++|||+.+++|.+++.....                       +.+..++..++.++|..+++|+     |++++.++.+
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~  163 (283)
T cd05090          84 MLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHV  163 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcE
Confidence            99999999999999853211                       1244566677788888888877     8999999999


Q ss_pred             EEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC------------
Q 042690          137 ETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS------------  202 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~------------  202 (266)
                      +|+|||+++....... .......++..|+|||.+.+..++.++|+||||+++|+|++ |..||....            
T Consensus       164 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~  243 (283)
T cd05090         164 KISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQ  243 (283)
T ss_pred             EeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC
Confidence            9999999986532221 12223445678999999888889999999999999999998 887875411            


Q ss_pred             ----CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          203 ----DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       203 ----~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                          +......+.+++.+||+.||.+||++.++++.|++|
T Consensus       244 ~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05090         244 LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRSW  283 (283)
T ss_pred             cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhcC
Confidence                223456778899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.4e-34  Score=247.67  Aligned_cols=206  Identities=15%  Similarity=0.180  Sum_probs=165.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .+|++.+.||+|+||.||++.+. .++..+++|.+.               ++++.++||||+++++++.+++..++|||
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHK-PSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEEC-CCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            57889999999999999999986 567778887543               36788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+.+++|.+++.....+.      +..++..++.++|+. +++|+     ||+++.++.++|+|||++.....   ....
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~---~~~~  160 (333)
T cd06650          84 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMAN  160 (333)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhh---hccc
Confidence            999999999998655433      334455555666643 45555     89999999999999999875432   1223


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc--------------------------------
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------------------------------  204 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------------------------------  204 (266)
                      ...++..|+|||++.+..++.++|+|||||++|+|++|+.||......                                
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (333)
T cd06650         161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSS  240 (333)
T ss_pred             cCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhh
Confidence            346789999999998888999999999999999999999987531100                                


Q ss_pred             -----------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 -----------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 -----------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                   .....+.+++.+||+.||.+||+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~  298 (333)
T cd06650         241 YGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMV  298 (333)
T ss_pred             hcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhh
Confidence                                         12245678999999999999999999974

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-35  Score=251.72  Aligned_cols=210  Identities=17%  Similarity=0.200  Sum_probs=171.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC-CCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH-HKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~-h~~iv~~~~~~~~~~~~~   84 (266)
                      +=..|+++++||.||.+.||++..  ++.+.+|+|++.                ..|.+++ |.+||.++|+...++.+|
T Consensus       359 kg~~Yeilk~iG~GGSSkV~kV~~--s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lY  436 (677)
T KOG0596|consen  359 KGREYEILKQIGSGGSSKVFKVLN--SDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLY  436 (677)
T ss_pred             CcchhhHHHhhcCCCcceeeeeec--CCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEE
Confidence            335799999999999999999997  577888888776                3677776 899999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCccccc----eeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALACR----ILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~n----ili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||-+- +|.+++.+...       ..+++++..+++.+|.+|++|+.    .|+--.|.+||+|||+|.....+.+.
T Consensus       437 mvmE~Gd~-DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVkG~LKLIDFGIA~aI~~DTTs  515 (677)
T KOG0596|consen  437 MVMECGDI-DLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVKGRLKLIDFGIANAIQPDTTS  515 (677)
T ss_pred             EEeecccc-cHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEeeeEEeeeechhcccCccccc
Confidence            99998865 99999987654       23568899999999999999983    45556789999999999987654444


Q ss_pred             cc-ccccCCCCcCCccccCCCC-----------CCcccchhhHHHHHHHHHhCCCcccC------------C------CC
Q 042690          154 TL-TGMRETKGYLPPEWFRNMP-----------VTVKVDVYSFGVMLLEIISCRCVERQ------------G------SD  203 (266)
Q Consensus       154 ~~-~~~~~~~~y~aPE~~~~~~-----------~~~~~Di~slG~i~~~l~tg~~p~~~------------~------~~  203 (266)
                      .. ....||+.||+||.+....           .+.++||||||||+|+|+.|+.||..            +      .+
T Consensus       516 I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp  595 (677)
T KOG0596|consen  516 IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFP  595 (677)
T ss_pred             eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCcccccc
Confidence            33 3588999999999875321           46789999999999999999999976            0      01


Q ss_pred             cccc-chHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 PKTL-EKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ~~~~-~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ..-. ..+++++..||..||.+||++.++|+.
T Consensus       596 ~~~~~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  596 DIPENDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            1111 238899999999999999999998753

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.3e-34  Score=252.14  Aligned_cols=210  Identities=17%  Similarity=0.149  Sum_probs=168.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +.|..++.||+|+||+||+|.+. .++..+|+|++.                 ++++.++||||+++++++.+.+..++|
T Consensus         1 ~~f~~~~~LG~G~~g~Vy~~~~~-~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv   79 (381)
T cd05626           1 SMFVKIKTLGIGAFGEVCLACKV-DTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV   79 (381)
T ss_pred             CCceEEEEEeecCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEE
Confidence            36888999999999999999976 678899999763                 267788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc---
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT---  152 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~---  152 (266)
                      |||+++|+|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........   
T Consensus        80 ~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~  159 (381)
T cd05626          80 MDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKY  159 (381)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccccccc
Confidence            99999999999997665543      44566677788888888887     89999999999999999753210000   


Q ss_pred             -------------------------------------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHH
Q 042690          153 -------------------------------------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLL  189 (266)
Q Consensus       153 -------------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~  189 (266)
                                                                 .......||+.|+|||.+.+..++.++|||||||++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~  239 (381)
T cd05626         160 YQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILF  239 (381)
T ss_pred             ccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHH
Confidence                                                       0011246899999999998888999999999999999


Q ss_pred             HHHhCCCcccCCCC-------------------ccccchHHHHHHH--hhhcCCCCCCCHHHHHHH
Q 042690          190 EIISCRCVERQGSD-------------------PKTLEKPVMIAIQ--FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       190 ~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~--cl~~~p~~Rps~~~il~~  234 (266)
                      +|+||..||.....                   ........+++.+  |+..+|..||++++++..
T Consensus       240 elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         240 EMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             HHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            99999999965221                   1234567788888  555666679999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.3e-34  Score=246.83  Aligned_cols=204  Identities=16%  Similarity=0.159  Sum_probs=167.7

Q ss_pred             eeccCCCcceEEEEEEEcC--CCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           29 LKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ++.||+|+||.||++....  ..+..+|+|.+.                  .+++.++||||+++++++..++..++|||
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEe
Confidence            3689999999999998632  467889998653                  36788899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+++..... ......
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~  159 (323)
T cd05584          81 YLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHE-GTVTHT  159 (323)
T ss_pred             CCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccC-CCcccc
Confidence            999999999997665533      34556677788898888888     899999999999999998754322 222233


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCC
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      ..|++.|+|||++.+..++.++||||||+++|+|++|+.||....               ++.....+.+++.+||+.+|
T Consensus       160 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  239 (323)
T cd05584         160 FCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNP  239 (323)
T ss_pred             cCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCH
Confidence            568999999999988888999999999999999999999986522               33445677899999999999


Q ss_pred             CCCC-----CHHHHHH
Q 042690          223 PLRP-----SLRIVAL  233 (266)
Q Consensus       223 ~~Rp-----s~~~il~  233 (266)
                      .+||     +++++++
T Consensus       240 ~~R~~~~~~~~~~l~~  255 (323)
T cd05584         240 SSRLGAGPGDAAEVQS  255 (323)
T ss_pred             hHcCCCCCCCHHHHhc
Confidence            9999     6777755

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.1e-34  Score=246.48  Aligned_cols=201  Identities=18%  Similarity=0.226  Sum_probs=163.7

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhh-hcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVH-VAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~-~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.+. .++..||+|.+..                 ++. ..+||||+++++++......++||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~   79 (316)
T cd05592           1 KVLGKGSFGKVMLAELK-GTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            46899999999999976 6788899996541                 222 3479999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++....... .......|
T Consensus        80 gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~-~~~~~~~g  158 (316)
T cd05592          80 GGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE-GKASTFCG  158 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC-CccccccC
Confidence            999999997655543      44566677788898888887     8999999999999999998643222 22334568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      |+.|+|||++.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R  238 (316)
T cd05592         159 TPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKR  238 (316)
T ss_pred             CccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHc
Confidence            999999999988889999999999999999999999997522               22344567789999999999999


Q ss_pred             CCHH-HHH
Q 042690          226 PSLR-IVA  232 (266)
Q Consensus       226 ps~~-~il  232 (266)
                      |++. +++
T Consensus       239 ~~~~~~l~  246 (316)
T cd05592         239 LGVDGDIR  246 (316)
T ss_pred             CCChHHHH
Confidence            9875 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=5.6e-35  Score=249.05  Aligned_cols=198  Identities=20%  Similarity=0.185  Sum_probs=164.6

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||+||+|.+. .+++.+|+|.+..                  +++.++||||+++++.+...+..++||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (323)
T cd05575           1 KVIGKGSFGKVLLAKHK-ADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVN   79 (323)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCC
Confidence            46899999999999975 6788999997641                  3467899999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|..++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++..... .........|
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~-~~~~~~~~~g  158 (323)
T cd05575          80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIE-HSKTTSTFCG  158 (323)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCccccc-CCCccccccC
Confidence            999999997655543      44566677788898888887     89999999999999999875321 1222334568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||...               ..+.....+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (323)
T cd05575         159 TPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKR  238 (323)
T ss_pred             ChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhC
Confidence            99999999999888999999999999999999999998652               223456677899999999999999


Q ss_pred             CCHH
Q 042690          226 PSLR  229 (266)
Q Consensus       226 ps~~  229 (266)
                      |++.
T Consensus       239 ~~~~  242 (323)
T cd05575         239 LGAK  242 (323)
T ss_pred             CCCC
Confidence            9874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.4e-34  Score=238.61  Aligned_cols=212  Identities=22%  Similarity=0.267  Sum_probs=170.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.+.||+|++|.||++.+.  .+..+|+|.+.             ..++.++||||+++++++......+++|||
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~--~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWR--GQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEY   80 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEec--CCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEc
Confidence            457889999999999999999874  45568888665             367788999999999999888889999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|+|||.++............
T Consensus        81 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~  160 (256)
T cd05113          81 MSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVG  160 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCC
Confidence            99999999997543 333      44556666688888888776     8999999999999999988654322222223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|++||.+.+..++.++|+||||+++|+|++ |..||....                +......+.+++.+||..
T Consensus       161 ~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  240 (256)
T cd05113         161 SKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHE  240 (256)
T ss_pred             CccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            345678999999988888999999999999999998 888886411                222345778999999999


Q ss_pred             CCCCCCCHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQ  236 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~  236 (266)
                      +|.+||++.+++..|+
T Consensus       241 ~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         241 KAEERPTFQQLLSSIE  256 (256)
T ss_pred             CcccCCCHHHHHHhhC
Confidence            9999999999998763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.4e-34  Score=257.09  Aligned_cols=211  Identities=14%  Similarity=0.155  Sum_probs=172.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...|.+.+.||.|++|.||+|......+..+++|...              .+++.++||||+++++++..++..++|||
T Consensus        66 ~~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E  145 (478)
T PTZ00267         66 EHMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIME  145 (478)
T ss_pred             ceeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEE
Confidence            3459999999999999999999753336778888643              37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           89 FMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        89 ~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      |+++|+|.+++.+.    ..+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++.........
T Consensus       146 ~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~  225 (478)
T PTZ00267        146 YGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSL  225 (478)
T ss_pred             CCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCcccc
Confidence            99999999988642    1232      34466677788888888887     899999999999999999876432221


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~  216 (266)
                       ......||+.|+|||++.+..++.++|||||||++|+|++|+.||....                +......+.+++.+
T Consensus       226 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  305 (478)
T PTZ00267        226 DVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDP  305 (478)
T ss_pred             ccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCccCCHHHHHHHHH
Confidence             2234568999999999988889999999999999999999999986521                22345678899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.+|..||++++++.
T Consensus       306 ~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        306 LLSKNPALRPTTQQLLH  322 (478)
T ss_pred             HhccChhhCcCHHHHHh
Confidence            99999999999998864

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.6e-34  Score=247.07  Aligned_cols=209  Identities=16%  Similarity=0.167  Sum_probs=168.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH------------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD------------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~------------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      +|.+.+.||+|+||.||++...  ..++..+|+|.+.                  .+++.+ +||||+++++++..++..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            4788999999999999999863  2467889998753                  255566 489999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+.+++|.+++.....+.      +..++..++.++|.++++|+     |||++.++.++|+|||+++.......
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~  160 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK  160 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC
Confidence            99999999999999997655543      33466777788888888887     89999999999999999986543333


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCC-------------------CCccccchHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQG-------------------SDPKTLEKPVM  212 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------------~~~~~~~~~~~  212 (266)
                      .......||..|+|||.+.+. .++.++|||||||++|+|+||+.||...                   .+......+.+
T Consensus       161 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (332)
T cd05614         161 ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSFIGPEAQD  240 (332)
T ss_pred             CccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence            333345689999999998765 4788999999999999999999998531                   11234456788


Q ss_pred             HHHHhhhcCCCCCC-----CHHHHHH
Q 042690          213 IAIQFVKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rp-----s~~~il~  233 (266)
                      ++.+||+.||.+||     +++++++
T Consensus       241 li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         241 LLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             HHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            99999999999999     6677764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.2e-35  Score=251.26  Aligned_cols=208  Identities=17%  Similarity=0.194  Sum_probs=173.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||+|.+. .++..||+|++.                 ++++.++||||+++++++.+++..++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDK-DTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEEC-CCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            6889999999999999999975 578899999764                 3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-----
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-----  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-----  151 (266)
                      ||+.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.......     
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  160 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYY  160 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccc
Confidence            9999999999998765543      44566677788888888887     8999999999999999998654322     


Q ss_pred             -----------------------ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------
Q 042690          152 -----------------------TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------  202 (266)
Q Consensus       152 -----------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------  202 (266)
                                             ........||+.|+|||.+.+..++.++|||||||++|+|++|+.||....      
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~  240 (350)
T cd05573         161 LNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYN  240 (350)
T ss_pred             ccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHH
Confidence                                   112234568999999999998899999999999999999999999996521      


Q ss_pred             -----------C--ccccchHHHHHHHhhhcCCCCCCC-HHHHHHH
Q 042690          203 -----------D--PKTLEKPVMIAIQFVKEKPPLRPS-LRIVALM  234 (266)
Q Consensus       203 -----------~--~~~~~~~~~l~~~cl~~~p~~Rps-~~~il~~  234 (266)
                                 +  ......+.+++.+|+. +|.+||+ ++++++.
T Consensus       241 ~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         241 KIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             HHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence                       1  1235677889999997 9999999 9999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=3.6e-34  Score=237.27  Aligned_cols=213  Identities=18%  Similarity=0.263  Sum_probs=174.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..+++|.+.                 ++++.++||||+++++++...+..+++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCL-LDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV   80 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEe-CCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEE
Confidence            57899999999999999999976 577889998542                 367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           87 YKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||+++++|.+++...    ..+      .+..++..++.++|..++.|+     ||+++.++.++|+|||++.......
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~  160 (267)
T cd08228          81 LELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             EEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchh
Confidence            9999999999988632    112      344556667788888887776     8999999999999999988754222


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~  212 (266)
                       .......++..|+|||.+.+..++.++|+||+|+++|+|++|..||.....                   ......+.+
T Consensus       161 -~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (267)
T cd08228         161 -TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPLPTEHYSEKLRE  239 (267)
T ss_pred             -HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCCChhhcCHHHHH
Confidence             222234578899999998888889999999999999999999998854211                   123356789


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ++.+||+.+|.+||+++++++.++.+
T Consensus       240 li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         240 LVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             HHHHHCCCCcccCcCHHHHHHHHHHh
Confidence            99999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-35  Score=241.44  Aligned_cols=205  Identities=17%  Similarity=0.218  Sum_probs=168.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeCC-----eEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQE-----CRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~~-----~~~lv~e~   89 (266)
                      .|...+.+|.|+||.||+|... .++..||||+..          ++|+.++|||||++.-+|....     ...+||||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~-e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVley  103 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLR-ETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEY  103 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEc-CCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHh
Confidence            5778899999999999999987 668999999876          4899999999999988886432     24589999


Q ss_pred             CCCCCHHHHHhhc----CC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeecccccc
Q 042690           90 MHNRSISSLLYEC----LR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        90 ~~~~~L~~~l~~~----~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++. +|.+++++.    .+      ..+..|+..++.++|.+++-|+     |+|+|.+ |.+||||||.|+....  +.
T Consensus       104 mP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~--~e  180 (364)
T KOG0658|consen  104 MPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVK--GE  180 (364)
T ss_pred             chH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeecc--CC
Confidence            987 999999853    22      2366778888888877666666     9999976 9999999999999763  34


Q ss_pred             ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC------------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS------------------------------  202 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------------------  202 (266)
                      .......|..|.|||.+.|. .|+.+.||||.||++.||+-|++.|+++.                              
T Consensus       181 pniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~  260 (364)
T KOG0658|consen  181 PNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEF  260 (364)
T ss_pred             CceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccc
Confidence            44567789999999988765 59999999999999999999999998821                              


Q ss_pred             --------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 --------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 --------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    .....++.++++.+++.++|.+|-++.+++.
T Consensus       261 ~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  261 KFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             cCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence                          1223466778999999999999999988774

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-34  Score=246.69  Aligned_cols=208  Identities=15%  Similarity=0.231  Sum_probs=166.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC-----CeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~-----~~~   83 (266)
                      +|.+.+.||+|+||.||+|... .++..||+|++.                .+++.++||||+++++++...     ...
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDT-HTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEEC-CCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceE
Confidence            4788999999999999999975 678899999754                367788999999999998643     247


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+. ++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||+++.......
T Consensus        80 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~  158 (338)
T cd07859          80 YVVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTP  158 (338)
T ss_pred             EEEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccC
Confidence            99999996 59999987665544      34566677788888888887     89999999999999999986432211


Q ss_pred             c--ccccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          153 Q--TLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      .  ......++..|+|||.+.+  ..++.++|||||||++|+|+||+.||.....                         
T Consensus       159 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  238 (338)
T cd07859         159 TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNE  238 (338)
T ss_pred             ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhh
Confidence            1  1234568999999998765  5688999999999999999999999854211                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                           +.....+.+++.+||+.||.+||+++++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         239 KARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             hHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                                 1123456789999999999999999999854

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.7e-34  Score=245.73  Aligned_cols=197  Identities=19%  Similarity=0.249  Sum_probs=161.7

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.++ .++..||+|.+..                 +++.+ +||||+++++++...+..++||||++
T Consensus         1 ~~lg~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~   79 (320)
T cd05590           1 RVLGKGSFGKVMLARLK-ESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVN   79 (320)
T ss_pred             CeeeeCCCeEEEEEEEc-CCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCC
Confidence            46899999999999976 6788899997641                 33333 69999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... .........|
T Consensus        80 ~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~-~~~~~~~~~g  158 (320)
T cd05590          80 GGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF-NGKTTSTFCG  158 (320)
T ss_pred             CchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc-CCCccccccc
Confidence            999999998665544      34556667788888888887     89999999999999999875421 1222334568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      |+.|+|||++.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  238 (320)
T cd05590         159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMR  238 (320)
T ss_pred             CccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHC
Confidence            999999999988889999999999999999999999997522               22345667899999999999999


Q ss_pred             CCH
Q 042690          226 PSL  228 (266)
Q Consensus       226 ps~  228 (266)
                      |++
T Consensus       239 ~~~  241 (320)
T cd05590         239 LGS  241 (320)
T ss_pred             CCC
Confidence            998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-35  Score=255.60  Aligned_cols=206  Identities=19%  Similarity=0.218  Sum_probs=174.1

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCC
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      .-+..+|.+++.||+|+||+|+++..+ ++++.+|||.+++                 ++... +||.++.++.+|.+.+
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k-~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELK-GTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKE  442 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEc-CCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCC
Confidence            345678999999999999999999987 7788999999883                 33333 6999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ++++||||+.||++..+.+ ...+      .+...+..+++++|.++++.+     |||+|.+|.+||+|||+++... .
T Consensus       443 ~l~fvmey~~Ggdm~~~~~-~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m-~  520 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHIH-TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM-G  520 (694)
T ss_pred             eEEEEEEecCCCcEEEEEe-cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccC-C
Confidence            9999999999999554443 2333      355667777799999999988     9999999999999999999754 2


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAI  215 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~  215 (266)
                      .+......+||+.|||||.+.+..|+.+.|-||||+++|||+.|+.||+++.               |...+.+.+.+++
T Consensus       521 ~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~  600 (694)
T KOG0694|consen  521 QGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMR  600 (694)
T ss_pred             CCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHH
Confidence            4446677899999999999999999999999999999999999999999733               3345567788999


Q ss_pred             HhhhcCCCCCCCH
Q 042690          216 QFVKEKPPLRPSL  228 (266)
Q Consensus       216 ~cl~~~p~~Rps~  228 (266)
                      ++|..||.+|-.+
T Consensus       601 ~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  601 RLLRKNPEKRLGS  613 (694)
T ss_pred             HHhccCcccccCC
Confidence            9999999999654

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.9e-34  Score=245.63  Aligned_cols=202  Identities=19%  Similarity=0.241  Sum_probs=164.8

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.+. .+++.+|+|.+..                 +++.+ +||||+++++++.+++..++||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~   79 (321)
T cd05591           1 KVLGKGSFGKVMLAELK-GTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVN   79 (321)
T ss_pred             CccccCCCeEEEEEEEC-CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCC
Confidence            46899999999999975 6788999997541                 33333 79999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|..++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... .........|
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~-~~~~~~~~~g  158 (321)
T cd05591          80 GGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGIL-NGVTTTTFCG  158 (321)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceeccc-CCcccccccc
Confidence            999999997665544      34556667788888888887     89999999999999999876432 1222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      +..|+|||++.+..++.++|+||||+++|+|++|+.||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R  238 (321)
T cd05591         159 TPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKR  238 (321)
T ss_pred             CccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHc
Confidence            999999999988889999999999999999999999997522               22245677899999999999999


Q ss_pred             C-------CHHHHHH
Q 042690          226 P-------SLRIVAL  233 (266)
Q Consensus       226 p-------s~~~il~  233 (266)
                      |       +++++++
T Consensus       239 ~~~~~~~~~~~~~~~  253 (321)
T cd05591         239 LGCVASQGGEDAIKQ  253 (321)
T ss_pred             CCCCCCCCCHHHHhc
Confidence            9       7777753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=9e-35  Score=247.97  Aligned_cols=201  Identities=18%  Similarity=0.162  Sum_probs=165.2

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||+||++.+. .++..+|+|.+..                  +++.++||||+++++++...+..++||||+.
T Consensus         1 ~~lg~G~fg~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05602           1 KVIGKGSFGKVLLARHK-AEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYIN   79 (325)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCC
Confidence            46899999999999976 5678899987631                  3466889999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++...... ........|
T Consensus        80 ~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~-~~~~~~~~g  158 (325)
T cd05602          80 GGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH-NGTTSTFCG  158 (325)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccC-CCCcccccC
Confidence            999999997655433      44566677788998888887     899999999999999998754321 222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||....               .+.....+.+++.+|++.+|.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (325)
T cd05602         159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKR  238 (325)
T ss_pred             CccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHC
Confidence            999999999998889999999999999999999999986521               23456677889999999999999


Q ss_pred             CCHHHHH
Q 042690          226 PSLRIVA  232 (266)
Q Consensus       226 ps~~~il  232 (266)
                      |++.+.+
T Consensus       239 ~~~~~~~  245 (325)
T cd05602         239 LGAKDDF  245 (325)
T ss_pred             CCCCCCH
Confidence            9876433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2.4e-34  Score=239.89  Aligned_cols=214  Identities=20%  Similarity=0.225  Sum_probs=172.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+..    .++..+++|.+.               ++++.++||||+++++++......
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            3568889999999999999998642    345778998764               367788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC--------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           84 LLVYKFMHNRSISSLLYECLR--------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~--------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      ++||||+++++|.+++...+.              +      .+..++..++..+|..+++|+     ||+++.++.++|
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl  163 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKI  163 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEE
Confidence            999999999999999975421              1      234556666678887777776     899999999999


Q ss_pred             eecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC--------------
Q 042690          139 SDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS--------------  202 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~--------------  202 (266)
                      +|||++......... ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||....              
T Consensus       164 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~  243 (280)
T cd05049         164 GDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLL  243 (280)
T ss_pred             CCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcC
Confidence            999999764322111 1123345678999999998899999999999999999998 998886411              


Q ss_pred             --CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 --DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 --~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                        +......+.+++.+||+.||.+||++.|+++.|+
T Consensus       244 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         244 QRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence              2234567789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-34  Score=235.79  Aligned_cols=215  Identities=20%  Similarity=0.264  Sum_probs=172.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .+|.+.+.||+|+||.||+|.+...  +...+++|.+.               ..++.++||||+++++.+...+..+++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            4688899999999999999998532  34578888764               367788999999999999988899999


Q ss_pred             EEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           87 YKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      |||+++++|.+++.... .++      +..++..++.++|.++++|+     ||+++.++.++|+|||++......... 
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  163 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATY  163 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccce
Confidence            99999999999997533 333      33445555678887777776     899999999999999999876421211 


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~  216 (266)
                      ......++..|+|||.+.+..++.++|+||||+++|+|++ |..||..                ..+......+.+++.+
T Consensus       164 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  243 (266)
T cd05033         164 TTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLD  243 (266)
T ss_pred             eccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Confidence            2222334678999999988889999999999999999998 8888754                1223345678899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ||+.+|.+||+++++++.|++.
T Consensus       244 cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         244 CWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             HcCCCcccCcCHHHHHHHHHhh
Confidence            9999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=4.3e-34  Score=242.07  Aligned_cols=211  Identities=18%  Similarity=0.331  Sum_probs=170.8

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++.+.+|.+.+.||+|+||.||+|... .++..+|+|.+.               .+++.++||||+++++++..++..+
T Consensus         2 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   80 (309)
T cd07872           2 FGKMETYIKLEKLGEGTYATVFKGRSK-LTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLT   80 (309)
T ss_pred             CCCCCceEEEEEecccCCEEEEEEEec-CCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEE
Confidence            467788999999999999999999975 567789999764               3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+ +|.+++..... +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... .
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~-~  158 (309)
T cd07872          81 LVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVP-T  158 (309)
T ss_pred             EEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCC-c
Confidence            99999976 88888865432 22      34566677788888888887     899999999999999999764321 2


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+ ..++.++|+||||+++|+|+||+.||.....                            
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T cd07872         159 KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEF  238 (309)
T ss_pred             cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhh
Confidence            22233457889999998764 4578899999999999999999999864211                            


Q ss_pred             -----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.......+++.+||+.||.+|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         239 KNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence                             112345678999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=4.2e-34  Score=242.91  Aligned_cols=220  Identities=20%  Similarity=0.278  Sum_probs=175.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..+|.+.+.||+|+||.||+|.+....   ...||+|.+.               .+++.++||||+++++++... ..+
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~   84 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cce
Confidence            357899999999999999999975222   2248888864               267788999999999998765 467


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +++||+.+|+|.+++.....       ..+..++..++.++|..+++|+     ||+++.++.++|+|||+++.......
T Consensus        85 ~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  164 (316)
T cd05108          85 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEK  164 (316)
T ss_pred             eeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCc
Confidence            99999999999999986432       2345566777788898888887     89999999999999999987643222


Q ss_pred             c-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHH
Q 042690          153 Q-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIA  214 (266)
Q Consensus       153 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~  214 (266)
                      . .......+..|+|||.+.+..++.++||||||+++|+|++ |..||....                ++.....+.+++
T Consensus       165 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  244 (316)
T cd05108         165 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIM  244 (316)
T ss_pred             ceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence            1 1122334678999999988889999999999999999998 888886521                222345678899


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      .+||..+|..||++.+++..+..+...+.
T Consensus       245 ~~cl~~~p~~Rps~~~l~~~l~~~~~~~~  273 (316)
T cd05108         245 VKCWMIDADSRPKFRELIIEFSKMARDPQ  273 (316)
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHcCCc
Confidence            99999999999999999999998877654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-34  Score=234.58  Aligned_cols=212  Identities=21%  Similarity=0.291  Sum_probs=171.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .+|.+.+.||+|++|.||+|.+.  .+..+++|.+.             .+++.++||||+++++++...+..+++|||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWN--NTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELM   83 (261)
T ss_pred             hheeeEEEecccCCccEEEEEec--CCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecc
Confidence            56889999999999999999974  45678998764             3777889999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC--CCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECL--RPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~--~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+++|.+++....  .+++      ..++..++..+|..+++|+     ||+++.++.++|+|||++.............
T Consensus        84 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  163 (261)
T cd05068          84 KYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREG  163 (261)
T ss_pred             cCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCC
Confidence            9999999997543  3333      3445555677777777776     8999999999999999998764222112222


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ...+..|+|||.+.+..++.++|+||||+++|+|+| |+.||....                +......+.+++.+|++.
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  243 (261)
T cd05068         164 AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKE  243 (261)
T ss_pred             CcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhc
Confidence            223457999999988889999999999999999999 888886511                223456788999999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQS  237 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~  237 (266)
                      +|.+||++.+++..|+.
T Consensus       244 ~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         244 DPDDRPTFETLQWKLED  260 (261)
T ss_pred             CcccCCCHHHHHHHHhc
Confidence            99999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3.3e-34  Score=244.36  Aligned_cols=202  Identities=16%  Similarity=0.194  Sum_probs=164.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCC-CceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHH-KNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h-~~iv~~~~~~~~~~~~~lv   86 (266)
                      +|.+.+.||+|+||.||+|... .+++.+|+|.+.                 .+++.++| ++|+++++++...+..++|
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERK-GTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV   79 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEE
Confidence            4788999999999999999976 667889999764                 14455655 5688899999989999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... .....
T Consensus        80 ~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~-~~~~~  158 (324)
T cd05587          80 MEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIF-GGKTT  158 (324)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCC-CCCce
Confidence            99999999999997665544      44556667788888888887     89999999999999999875321 11222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhc
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ....||..|+|||++.+..++.++|+||+||++|+|+||+.||....               +......+.+++.+||..
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~  238 (324)
T cd05587         159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTK  238 (324)
T ss_pred             eeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhc
Confidence            34568999999999998889999999999999999999999996522               334556777899999999


Q ss_pred             CCCCCCCH
Q 042690          221 KPPLRPSL  228 (266)
Q Consensus       221 ~p~~Rps~  228 (266)
                      ||.+|++.
T Consensus       239 ~P~~R~~~  246 (324)
T cd05587         239 HPAKRLGC  246 (324)
T ss_pred             CHHHcCCC
Confidence            99999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=7.5e-34  Score=237.23  Aligned_cols=218  Identities=19%  Similarity=0.226  Sum_probs=170.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCc---ceeeeeeHHH---------------HhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDK---TNIGVKKLDK---------------VVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~---~~vaiK~~~~---------------~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|.+.+.||+|+||.||+|.+.....   ..+++|.+..               .++.+.||||+++++++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEE
Confidence            578889999999999999999852222   2467776641               4467789999999998754 45778


Q ss_pred             EEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++||+.+|+|.+++.... .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||+++........
T Consensus        86 i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~  165 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKK  165 (279)
T ss_pred             EEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcc
Confidence            999999999999997543 2      3355666677788888888887     899999999999999999865322211


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCCC----------------ccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGSD----------------PKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~~----------------~~~~~~~~~l~~  215 (266)
                       ......++..|++||.+.+..++.++|+||||+++||+++ |..||.....                ......+.+++.
T Consensus       166 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  245 (279)
T cd05111         166 YFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDVYMVMV  245 (279)
T ss_pred             cccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHH
Confidence             1223445678999999988889999999999999999998 8888865221                112335677999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +||..||.+||++.++++.|..+.+.|
T Consensus       246 ~c~~~~p~~Rps~~el~~~l~~~~~~~  272 (279)
T cd05111         246 KCWMIDENVRPTFKELANEFTRMARDP  272 (279)
T ss_pred             HHcCCCcccCcCHHHHHHHHHHHHhCC
Confidence            999999999999999999999988765

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=251.18  Aligned_cols=218  Identities=22%  Similarity=0.308  Sum_probs=183.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .++....+||.|.||.||.|.|+ ...-.||+|.+++             +|+.++|||+|+++|+|..+..+|||+|||
T Consensus       267 tdItMkhKLGGGQYGeVYeGvWK-kyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM  345 (1157)
T KOG4278|consen  267 TDITMKHKLGGGQYGEVYEGVWK-KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFM  345 (1157)
T ss_pred             hheeeeeccCCCcccceeeeeee-ccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecc
Confidence            45777889999999999999997 6677899998884             899999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+|+|.+|+++..+        +....++..++.++-..++||+     |-|+.++..+|++|||+++.+..+.-..+..
T Consensus       346 ~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAG  425 (1157)
T KOG4278|consen  346 CYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAG  425 (1157)
T ss_pred             cCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccC
Confidence            99999999997655        2344566666766666666665     8999999999999999999986443333334


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~~  220 (266)
                      -.-.+.|.|||-+....++.++|||+||+++||+.| |..|+++                +.+....+.+.+++++||+.
T Consensus       426 AKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~W  505 (1157)
T KOG4278|consen  426 AKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNW  505 (1157)
T ss_pred             ccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcC
Confidence            444678999999998899999999999999999998 6678887                44666778889999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCC
Q 042690          221 KPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +|.+||+++|+-+.++.+...+
T Consensus       506 sPsDRPsFaeiHqafEtmf~~s  527 (1157)
T KOG4278|consen  506 SPSDRPSFAEIHQAFETMFSSS  527 (1157)
T ss_pred             CcccCccHHHHHHHHHHHhccc
Confidence            9999999999998888875543

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-34  Score=249.73  Aligned_cols=207  Identities=16%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++.+. .++..||+|++.                 .+++.++||||+++++++.+++..++||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKK-DTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            6889999999999999999986 568889999764                 2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc---
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ---  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~---  153 (266)
                      ||+.+|+|.+++.....++      +..++..++.++|.++++|+     ||+++.++.++|+|||++.........   
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~  160 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFY  160 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccccc
Confidence            9999999999998665544      44567777788898888887     899999999999999998754211100   


Q ss_pred             ----------------------------------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCccc
Q 042690          154 ----------------------------------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVER  199 (266)
Q Consensus       154 ----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~  199 (266)
                                                        ......||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~  240 (364)
T cd05599         161 RILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFC  240 (364)
T ss_pred             ccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCC
Confidence                                              0012358999999999988889999999999999999999999996


Q ss_pred             CCCC-------------------ccccchHHHHHHHhhhcCCCCCCC---HHHHHH
Q 042690          200 QGSD-------------------PKTLEKPVMIAIQFVKEKPPLRPS---LRIVAL  233 (266)
Q Consensus       200 ~~~~-------------------~~~~~~~~~l~~~cl~~~p~~Rps---~~~il~  233 (266)
                      ....                   ......+.+++.+|+. +|.+|++   ++++++
T Consensus       241 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         241 SDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             CCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            5211                   1234567789999996 8999997   888865

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=6.5e-35  Score=249.33  Aligned_cols=207  Identities=16%  Similarity=0.154  Sum_probs=169.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++... .++..+|+|.+.                 .+++.++||||+++++++.+....++||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREK-ATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            6889999999999999999976 678889998764                 2566778999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++... ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~  160 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNS  160 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceee
Confidence            999999999999765 3333      44566777788888888887     89999999999999999987643333233


Q ss_pred             ccccCCCCcCCccccC------CCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchH
Q 042690          156 TGMRETKGYLPPEWFR------NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKP  210 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~------~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~  210 (266)
                      ....+|+.|+|||++.      +..++.++||||||+++|+|++|..||....                   .+.....+
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  240 (330)
T cd05601         161 KLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDF  240 (330)
T ss_pred             ecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHH
Confidence            3456899999999876      4557889999999999999999999996522                   11245567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++..|+. +|.+||++++++.
T Consensus       241 ~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         241 LDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             HHHHHHHcc-ChhhCCCHHHHhC
Confidence            889999998 9999999999874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.5e-34  Score=249.16  Aligned_cols=211  Identities=14%  Similarity=0.140  Sum_probs=169.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|.+.+.||+|+||.||++.+. .++..+|+|.+.                 .+++.++||||+++++++.++...++
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHK-SSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            457999999999999999999986 677889998653                 26678899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           86 VYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||||+++|+|.+++.....     ..+..++..++.++|.++++|+     ||+++.++.+||+|||++...........
T Consensus       121 v~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~  200 (370)
T cd05621         121 VMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRC  200 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceec
Confidence            9999999999999975421     2345667777888998888888     89999999999999999987543222233


Q ss_pred             ccccCCCCcCCccccCCCC----CCcccchhhHHHHHHHHHhCCCcccCCC-----------------C--ccccchHHH
Q 042690          156 TGMRETKGYLPPEWFRNMP----VTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D--PKTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~--~~~~~~~~~  212 (266)
                      ....||+.|+|||++.+..    ++.++|+||+||++|+|++|+.||....                 +  ......+.+
T Consensus       201 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~  280 (370)
T cd05621         201 DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKN  280 (370)
T ss_pred             ccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHH
Confidence            3566899999999886533    7789999999999999999999997522                 1  123455678


Q ss_pred             HHHHhhhcCCCC--CCCHHHHHHH
Q 042690          213 IAIQFVKEKPPL--RPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~--Rps~~~il~~  234 (266)
                      ++..|+..++.+  |+++.++++.
T Consensus       281 li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         281 LICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             HHHHHccCchhccCCCCHHHHhcC
Confidence            899999755543  8899998765

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=6.5e-34  Score=238.97  Aligned_cols=219  Identities=17%  Similarity=0.213  Sum_probs=175.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..+|.+.+.||+|+||.||++.+..    .+...+++|.+.              ..++.++||||+++++++......+
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            3578899999999999999998531    245567887764              3677889999999999999989999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC----------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEE
Q 042690           85 LVYKFMHNRSISSLLYECLR----------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVE  137 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~----------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~  137 (266)
                      +||||+.+++|.+++.....                +      .+..++..++.++|.++++|+     ||+++.++.++
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~  163 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVK  163 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEE
Confidence            99999999999999975321                2      234555566677888887776     89999999999


Q ss_pred             EeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-------------
Q 042690          138 TSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-------------  202 (266)
Q Consensus       138 l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-------------  202 (266)
                      |+|||++........ .......++..|+|||.+.+..++.++|+||||+++|+|+| |..||....             
T Consensus       164 l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~  243 (291)
T cd05094         164 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRV  243 (291)
T ss_pred             ECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCC
Confidence            999999976432221 11223446788999999988889999999999999999999 888875411             


Q ss_pred             ---CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          203 ---DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       203 ---~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                         +...+..+.+++.+||+.+|.+||++++++++|+.+...
T Consensus       244 ~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         244 LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence               122345688999999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=8.8e-34  Score=237.81  Aligned_cols=219  Identities=18%  Similarity=0.249  Sum_probs=175.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|.+.+.||+|+||+||++...    ..++..+++|.+.              .+++.++||||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            47889999999999999999852    2345567888754              36778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC-------------CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           86 VYKFMHNRSISSLLYECLR-------------PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-------------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      ||||+.+++|.+++.....             ++      +..++..++.++|..+++|+     ||++++++.++|+||
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~df  164 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF  164 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccC
Confidence            9999999999999974321             22      44556667788888888777     899999999999999


Q ss_pred             Ccceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------C
Q 042690          142 GLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------D  203 (266)
Q Consensus       142 g~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~  203 (266)
                      |++......... ......++..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +
T Consensus       165 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~~~~  244 (288)
T cd05093         165 GMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRP  244 (288)
T ss_pred             CccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcCCCC
Confidence            999765322211 1223345678999999988889999999999999999998 888875411                1


Q ss_pred             ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          204 PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       204 ~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ......+.+++.+||+.||.+||++.++++.|+.+....
T Consensus       245 ~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         245 RTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            234567889999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.9e-34  Score=244.19  Aligned_cols=202  Identities=19%  Similarity=0.217  Sum_probs=165.2

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||+||++.+. .++..+|+|.+..                 +++.+ +||||+++++++.+.+..++||||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   79 (318)
T cd05570           1 KVLGKGSFGKVLLAELK-GTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVN   79 (318)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            46899999999999976 6678899996641                 34445 69999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|..++.....+++      ..++..++.++|..+++|+     ||+++.++.++|+|||+++..... ........+
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~g  158 (318)
T cd05570          80 GGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILG-GVTTSTFCG  158 (318)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcC-CCcccceec
Confidence            9999999987655443      3456667788888888887     899999999999999998753211 122233468


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      +..|+|||.+.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+||..||.+|
T Consensus       159 ~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  238 (318)
T cd05570         159 TPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKR  238 (318)
T ss_pred             CccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHc
Confidence            999999999998899999999999999999999999996522               22345677899999999999999


Q ss_pred             CCH-----HHHHH
Q 042690          226 PSL-----RIVAL  233 (266)
Q Consensus       226 ps~-----~~il~  233 (266)
                      |++     .++++
T Consensus       239 ~s~~~~~~~~ll~  251 (318)
T cd05570         239 LGCLPTGEQDIKG  251 (318)
T ss_pred             CCCCCCCHHHHhc
Confidence            998     77764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.7e-34  Score=243.25  Aligned_cols=201  Identities=19%  Similarity=0.260  Sum_probs=163.0

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhh-hcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVH-VAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~-~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.+. .++..||+|.+..                 +++ .++||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~   79 (316)
T cd05619           1 KMLGKGSFGKVFLAELK-GTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCC
Confidence            46899999999999976 6678899996642                 233 3589999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ........|
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~g  158 (316)
T cd05619          80 GGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLG-DAKTCTFCG  158 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCC-CCceeeecC
Confidence            999999998654443      44556667788888888887     899999999999999998753211 112234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      |..|+|||++.+..++.++|+||+||++|+|++|..||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  238 (316)
T cd05619         159 TPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERR  238 (316)
T ss_pred             CccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhc
Confidence            999999999988889999999999999999999999986522               22234566789999999999999


Q ss_pred             CCHH-HHH
Q 042690          226 PSLR-IVA  232 (266)
Q Consensus       226 ps~~-~il  232 (266)
                      |++. +++
T Consensus       239 ~~~~~~l~  246 (316)
T cd05619         239 LGVKGDIR  246 (316)
T ss_pred             CCChHHHH
Confidence            9996 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.1e-34  Score=234.74  Aligned_cols=210  Identities=25%  Similarity=0.307  Sum_probs=168.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .+|.+.+.||+|++|.||++.++  .+..+++|.+.             ++++.++||||+++++++...+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~--~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWR--GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEec--CCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            46788999999999999999875  45678888754             3677889999999999999888999999999


Q ss_pred             CCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           91 HNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        91 ~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      ++++|.+++.... .++      +..++..++..+|..+++|+     ||+++.++.++|+|||+++.............
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~  161 (256)
T cd05059          82 ANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGT  161 (256)
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCC
Confidence            9999999997533 333      34555566678888787777     89999999999999999976532222122222


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhcC
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~~  221 (266)
                      .++..|+|||.+.+..++.++|+||||+++|+|++ |..||...                .+...+..+.+++.+||..+
T Consensus       162 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  241 (256)
T cd05059         162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEK  241 (256)
T ss_pred             CCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCC
Confidence            33467999999988889999999999999999999 77787541                12234567889999999999


Q ss_pred             CCCCCCHHHHHHHH
Q 042690          222 PPLRPSLRIVALML  235 (266)
Q Consensus       222 p~~Rps~~~il~~l  235 (266)
                      |.+||++.++++.|
T Consensus       242 p~~Rpt~~~~l~~l  255 (256)
T cd05059         242 PEDRPAFKKLLSQL  255 (256)
T ss_pred             hhhCcCHHHHHHHh
Confidence            99999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=4.6e-34  Score=247.68  Aligned_cols=211  Identities=14%  Similarity=0.141  Sum_probs=168.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|.+.+.||+|+||.||++.++ .++..+|+|.+.                 .+++.++||||+++++++.+++..++
T Consensus        42 ~~~y~i~~~lG~G~fg~Vy~~~~~-~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (371)
T cd05622          42 AEDYEVVKVIGRGAFGEVQLVRHK-STRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYM  120 (371)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEC-CCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEE
Confidence            468999999999999999999986 678889998753                 26677899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           86 VYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||||+.+++|.+++....-     ..+..++..++.++|.++++|+     ||+++.++.++|+|||++...........
T Consensus       121 v~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~  200 (371)
T cd05622         121 VMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRC  200 (371)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccc
Confidence            9999999999999975431     2234566777788898888887     89999999999999999987643222233


Q ss_pred             ccccCCCCcCCccccCCC----CCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHH
Q 042690          156 TGMRETKGYLPPEWFRNM----PVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~----~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~  212 (266)
                      ....||+.|+|||++.+.    .++.++|+|||||++|+|++|+.||....                   .......+.+
T Consensus       201 ~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~  280 (371)
T cd05622         201 DTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKN  280 (371)
T ss_pred             cCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHH
Confidence            346689999999988653    27889999999999999999999997521                   1134556778


Q ss_pred             HHHHhhhcCCCC--CCCHHHHHHH
Q 042690          213 IAIQFVKEKPPL--RPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~--Rps~~~il~~  234 (266)
                      ++.+|+..++.+  ||+++++++.
T Consensus       281 li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         281 LICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             HHHHHcCChhhhcCCCCHHHHhcC
Confidence            999999843332  7788888764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=4.3e-34  Score=249.01  Aligned_cols=207  Identities=16%  Similarity=0.170  Sum_probs=166.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|..++.||+|+||.||+|... .++..+|+|.+.                 ++++.++||||+++++.+.+....++||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~-~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKV-DTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEEC-CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEE
Confidence            5788999999999999999976 678889999764                 2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-----
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-----  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-----  151 (266)
                      ||+++|+|.+++.....+.      +..++..++.++|..+++|+     |||++.++.++|+|||++.......     
T Consensus        81 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~  160 (382)
T cd05625          81 DYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYY  160 (382)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcccccccccccc
Confidence            9999999999997655433      44566777788998888888     8999999999999999975321000     


Q ss_pred             -----------------------------------------ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHH
Q 042690          152 -----------------------------------------TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLE  190 (266)
Q Consensus       152 -----------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~  190 (266)
                                                               ........||+.|+|||++.+..++.++|||||||++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~e  240 (382)
T cd05625         161 QSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYE  240 (382)
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHH
Confidence                                                     000112468999999999988889999999999999999


Q ss_pred             HHhCCCcccCCCC-------------------ccccchHHHHHHHhhhcCCCCCCC---HHHHHH
Q 042690          191 IISCRCVERQGSD-------------------PKTLEKPVMIAIQFVKEKPPLRPS---LRIVAL  233 (266)
Q Consensus       191 l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~cl~~~p~~Rps---~~~il~  233 (266)
                      |++|+.||....+                   ........+++.+++ .+|.+|++   ++++++
T Consensus       241 lltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         241 MLVGQPPFLAQTPLETQMKVINWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             HHhCCCCCCCCCHHHHHHHHHccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            9999999975211                   123456677887765 48999987   777654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1.2e-34  Score=247.11  Aligned_cols=199  Identities=22%  Similarity=0.182  Sum_probs=164.6

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|... .+++.+|+|.+..                  +++.++||||+++++++..++..++||||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05604           1 KVIGKGSFGKVLLAKRK-LDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVN   79 (325)
T ss_pred             CceeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCC
Confidence            46899999999999975 6788999997641                  3567889999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|..++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+++.... .........|
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~-~~~~~~~~~g  158 (325)
T cd05604          80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIA-QSDTTTTFCG  158 (325)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCC-CCCCcccccC
Confidence            999999987655543      44566777789998888887     89999999999999999875321 1222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      ++.|+|||.+.+..++.++|+|||||++|+|++|..||....               .+.....+.+++.+|++.+|.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R  238 (325)
T cd05604         159 TPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRR  238 (325)
T ss_pred             ChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhc
Confidence            999999999998889999999999999999999999997522               23345667789999999999999


Q ss_pred             CCHHH
Q 042690          226 PSLRI  230 (266)
Q Consensus       226 ps~~~  230 (266)
                      |++.+
T Consensus       239 ~~~~~  243 (325)
T cd05604         239 LGAKE  243 (325)
T ss_pred             CCCCC
Confidence            98754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=5.6e-34  Score=242.19  Aligned_cols=201  Identities=19%  Similarity=0.222  Sum_probs=163.5

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhh-hcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVH-VAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~-~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.++ .++..+|+|.+..                 +++ ..+||||+++++++.+.+..++||||+.
T Consensus         1 ~~lg~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~   79 (316)
T cd05620           1 KVLGKGSFGKVLLAELK-GKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCC
Confidence            46899999999999986 6788899997641                 222 3479999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+..      ..++..++.++|.++++|+     ||+++.++.++|+|||++..... .........|
T Consensus        80 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~-~~~~~~~~~g  158 (316)
T cd05620          80 GGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVF-GDNRASTFCG  158 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeeccc-CCCceeccCC
Confidence            9999999987655443      3456677788888888887     89999999999999999875321 1122234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      +..|+|||.+.+..++.++|+||||+++|+|++|+.||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R  238 (316)
T cd05620         159 TPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRR  238 (316)
T ss_pred             CcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHc
Confidence            999999999998889999999999999999999999997522               22234567789999999999999


Q ss_pred             CCHH-HHH
Q 042690          226 PSLR-IVA  232 (266)
Q Consensus       226 ps~~-~il  232 (266)
                      |++. +++
T Consensus       239 ~~~~~~~~  246 (316)
T cd05620         239 LGVVGNIR  246 (316)
T ss_pred             CCChHHHH
Confidence            9974 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.2e-34  Score=247.29  Aligned_cols=202  Identities=16%  Similarity=0.165  Sum_probs=164.2

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||++... .++..+|+|.+.                 ++++.++||||+++++++..+...++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEK-ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46899999999999975 678889998764                 256678899999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      ++|..++.....+.      +..++..++.++|. .+++|+     ||+++.++.++|+|||+++..... ........|
T Consensus        80 ~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~g  158 (325)
T cd05594          80 GELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD-GATMKTFCG  158 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCC-CcccccccC
Confidence            99999987655544      33455566677775 566666     899999999999999998754211 222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      ++.|+|||++.+..++.++|||||||++|+|+||+.||....               +......+.+++.+||+.||.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R  238 (325)
T cd05594         159 TPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQR  238 (325)
T ss_pred             CcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHh
Confidence            999999999988889999999999999999999999996522               23345677899999999999999


Q ss_pred             C-----CHHHHHH
Q 042690          226 P-----SLRIVAL  233 (266)
Q Consensus       226 p-----s~~~il~  233 (266)
                      +     ++.++++
T Consensus       239 ~~~~~~~~~~il~  251 (325)
T cd05594         239 LGGGPDDAKEIMQ  251 (325)
T ss_pred             CCCCCCCHHHHhc
Confidence            6     8888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=5.1e-34  Score=243.14  Aligned_cols=202  Identities=18%  Similarity=0.204  Sum_probs=165.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +|.+.+.||+|+||.||+|.+. .++..+|+|.+..                 ++..+ +|++|+++++++...+..++|
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv   79 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERK-GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFV   79 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEE
Confidence            4778899999999999999975 6778899997541                 23333 589999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||+++.... .....
T Consensus        80 ~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~-~~~~~  158 (323)
T cd05616          80 MEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMW-DGVTT  158 (323)
T ss_pred             EcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCC-CCCcc
Confidence            99999999999997665544      44556666788888888887     89999999999999999875321 12222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhc
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ....||+.|+|||.+.+..++.++|+|||||++|+|+||+.||....               +......+.+++.+|++.
T Consensus       159 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~  238 (323)
T cd05616         159 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTK  238 (323)
T ss_pred             ccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHccc
Confidence            34568999999999998899999999999999999999999997622               234556778899999999


Q ss_pred             CCCCCCCH
Q 042690          221 KPPLRPSL  228 (266)
Q Consensus       221 ~p~~Rps~  228 (266)
                      +|.+|++.
T Consensus       239 ~p~~R~~~  246 (323)
T cd05616         239 HPGKRLGC  246 (323)
T ss_pred             CHHhcCCC
Confidence            99999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=233.14  Aligned_cols=210  Identities=17%  Similarity=0.161  Sum_probs=171.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..|.+.+.||+|++|.||++... .++..+++|.+.                   .+++.++||||+++++++..+...+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   80 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDV-DTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLS   80 (263)
T ss_pred             CcccccceecCCCceEEEEEEEc-CCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEE
Confidence            35788899999999999999975 567889988642                   3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++|||+++++|.+++.....+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++.........
T Consensus        81 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~  160 (263)
T cd06625          81 IFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSS  160 (263)
T ss_pred             EEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccc
Confidence            9999999999999997654433      44566667788888888777     899999999999999999765322111


Q ss_pred             cc--ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHHHH
Q 042690          154 TL--TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVMIA  214 (266)
Q Consensus       154 ~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~l~  214 (266)
                      ..  ....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...                 .+......+.+++
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  240 (263)
T cd06625         161 GTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPQLPSHVSPDARNFL  240 (263)
T ss_pred             cccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCCCCCCCccCCHHHHHHH
Confidence            11  2345678999999999888999999999999999999999998651                 1223456778899


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+||..+|.+||+++++++.
T Consensus       241 ~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         241 RRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             HHHhhcCcccCCCHHHHhhC
Confidence            99999999999999999863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.2e-34  Score=250.25  Aligned_cols=209  Identities=16%  Similarity=0.143  Sum_probs=168.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+++.||+|+||.||++... .++..+|+|.+.                 ++++.++||||+++++.+.+++..++|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv   79 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKV-DTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFV   79 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEEC-CCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEE
Confidence            47899999999999999999976 668899999764                 267788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc----
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ----  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~----  151 (266)
                      |||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++.......    
T Consensus        80 ~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~  159 (376)
T cd05598          80 MDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKY  159 (376)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccc
Confidence            99999999999998655433      34567777788998888887     8999999999999999975321000    


Q ss_pred             --------------------------------------ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh
Q 042690          152 --------------------------------------TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS  193 (266)
Q Consensus       152 --------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t  193 (266)
                                                            ........||+.|||||++.+..++.++|||||||++|+|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~  239 (376)
T cd05598         160 YQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLV  239 (376)
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhh
Confidence                                                  000112468999999999998889999999999999999999


Q ss_pred             CCCcccCCCC-------------------ccccchHHHHHHHhhhcCCCCCC---CHHHHHHH
Q 042690          194 CRCVERQGSD-------------------PKTLEKPVMIAIQFVKEKPPLRP---SLRIVALM  234 (266)
Q Consensus       194 g~~p~~~~~~-------------------~~~~~~~~~l~~~cl~~~p~~Rp---s~~~il~~  234 (266)
                      |+.||....+                   ........+++.+|+ .+|.+|+   ++.++++.
T Consensus       240 G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         240 GQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             CCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            9999975221                   123456677888866 5999999   88888643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=6.7e-34  Score=246.15  Aligned_cols=209  Identities=19%  Similarity=0.150  Sum_probs=166.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|++.+.||+|+||+||++... .++..+|+|.+.                 .+++.++||||+++++.+.+....++||
T Consensus         2 ~y~~~~~LG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           2 DFESLKVIGRGAFGEVRLVQKK-DTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CceEeEEEEeCCCEEEEEEEEC-CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            6888999999999999999976 678899999763                 2667889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc----
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT----  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~----  152 (266)
                      ||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||+++.......    
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~  160 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY  160 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccc
Confidence            9999999999998765544      34556667788898888887     89999999999999999875421100    


Q ss_pred             ------------------------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC
Q 042690          153 ------------------------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS  202 (266)
Q Consensus       153 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~  202 (266)
                                                    .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~  240 (363)
T cd05628         161 RNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET  240 (363)
T ss_pred             ccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence                                          00123468999999999988889999999999999999999999997522


Q ss_pred             C-------------------ccccchHHHHHHHhhh--cCCCCCCCHHHHHHH
Q 042690          203 D-------------------PKTLEKPVMIAIQFVK--EKPPLRPSLRIVALM  234 (266)
Q Consensus       203 ~-------------------~~~~~~~~~l~~~cl~--~~p~~Rps~~~il~~  234 (266)
                      .                   ........+++.+++.  .++..||+++++++.
T Consensus       241 ~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~~~~~r~~r~~~~ei~~h  293 (363)
T cd05628         241 PQETYKKVMNWKETLIFPPEVPISEKAKDLILRFCCEWEHRIGAPGVEEIKTN  293 (363)
T ss_pred             HHHHHHHHHcCcCcccCCCcCCCCHHHHHHHHHHcCChhhcCCCCCHHHHhCC
Confidence            1                   1123456677776443  234457899999765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.1e-34  Score=236.63  Aligned_cols=214  Identities=19%  Similarity=0.244  Sum_probs=169.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++|.+.+.||+|++|.||+|.+.    ...+..+|+|.+.               .+++.++||||+++++++......+
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~   85 (277)
T cd05062           6 EKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL   85 (277)
T ss_pred             HHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeE
Confidence            46889999999999999999863    1345678998653               3667889999999999998888999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC----------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCc
Q 042690           85 LVYKFMHNRSISSLLYECLR----------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      +||||+.+++|.+++.....                ..+..++..++.++|..+++|+     ||+++.++.++|+|||+
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~  165 (277)
T cd05062          86 VIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM  165 (277)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCC
Confidence            99999999999999975321                1233456667788888888877     89999999999999999


Q ss_pred             ceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Ccc
Q 042690          144 AKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPK  205 (266)
Q Consensus       144 a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~  205 (266)
                      +.......... .....++..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  245 (277)
T cd05062         166 TRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLLDKPDN  245 (277)
T ss_pred             ccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCC
Confidence            87643222211 112344678999999988889999999999999999999 677876521                222


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~  237 (266)
                      ....+.+++.+||+.+|.+||++.|+++.|++
T Consensus       246 ~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         246 CPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            34567889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=7.5e-34  Score=235.45  Aligned_cols=212  Identities=15%  Similarity=0.131  Sum_probs=171.1

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +...+|.+.+.||+|+||.||+|... .++..+++|++.              .+++.++||||+++++++..++..++|
T Consensus         6 ~~~~~y~~~~~lg~g~~g~vy~~~~~-~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv   84 (267)
T cd06646           6 NPQHDYELIQRVGSGTYGDVYKARNL-HTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWIC   84 (267)
T ss_pred             CchhhcchhheeecCCCeEEEEEEEC-CCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEE
Confidence            34568999999999999999999975 567788888654              367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+.+++|.+++.....++      +..++..++.++|..++.|+     |++++.++.++|+|||++...... ....
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~-~~~~  163 (267)
T cd06646          85 MEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITAT-IAKR  163 (267)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeeccc-cccc
Confidence            99999999999987655433      44566667788888888887     899999999999999999875321 1122


Q ss_pred             ccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------ccccchHHH
Q 042690          156 TGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------PKTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~~~~~~~~~  212 (266)
                      ....++..|+|||.+.   ...++.++|+||+|+++|+|++|+.|+....+                    ......+.+
T Consensus       164 ~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (267)
T cd06646         164 KSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHN  243 (267)
T ss_pred             CccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHH
Confidence            3345788999999874   34477899999999999999999998754110                    112456789


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ++.+||+.+|.+||+++++++.
T Consensus       244 li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         244 FVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             HHHHHhhCChhhCcCHHHHhcC
Confidence            9999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.3e-33  Score=244.05  Aligned_cols=213  Identities=19%  Similarity=0.208  Sum_probs=169.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ..+|.+.+.||+|+||.||++... .++..+|+|.+.                .+++.++||||+++++++....     
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDT-VLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEc-CCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            568999999999999999999975 678899999864                3677889999999999986543     


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                       ..++||||+.+ +|.+.+.....    ..+..++..++.++|.++++|+     ||+++.++.++|+|||++.....  
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~--  175 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT--  175 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCcccccc--
Confidence             47899999976 67776643211    2345667777888999888888     89999999999999999976432  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------  204 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------  204 (266)
                      ........+|..|+|||++.+..++.++||||||+++|+|++|+.||......                           
T Consensus       176 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (359)
T cd07876         176 NFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRN  255 (359)
T ss_pred             CccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            22223456789999999999888999999999999999999999999642100                           


Q ss_pred             ------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHH
Q 042690          205 ------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSIL  239 (266)
Q Consensus       205 ------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~  239 (266)
                                                    .....+.+++.+||..||.+|||+.|+++.  +..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  322 (359)
T cd07876         256 YVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVWY  322 (359)
T ss_pred             HHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhhc
Confidence                                          012356789999999999999999999864  44443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=4.9e-34  Score=243.84  Aligned_cols=201  Identities=18%  Similarity=0.219  Sum_probs=162.4

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||++.+. .++..||+|.+..                 +++.+ +||||+++++++.+.+..++||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~   79 (329)
T cd05588           1 RVIGRGSYAKVLLVELK-KTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVS   79 (329)
T ss_pred             CeEeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCC
Confidence            46899999999999976 6788899997652                 34455 69999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+++.... .........|
T Consensus        80 ~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~-~~~~~~~~~g  158 (329)
T cd05588          80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIR-PGDTTSTFCG  158 (329)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccccccc-CCCccccccC
Confidence            999999987655544      34556667788888888887     89999999999999999875321 1222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------CCCccccchHHHHHHH
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------~~~~~~~~~~~~l~~~  216 (266)
                      |+.|+|||++.+..++.++|+|||||++|+|++|+.||..                        ..+......+.+++.+
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~  238 (329)
T cd05588         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKG  238 (329)
T ss_pred             CccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence            9999999999988899999999999999999999999852                        1122334567789999


Q ss_pred             hhhcCCCCCCC------HHHHH
Q 042690          217 FVKEKPPLRPS------LRIVA  232 (266)
Q Consensus       217 cl~~~p~~Rps------~~~il  232 (266)
                      ||+.||.+||+      +++++
T Consensus       239 ~L~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         239 FLNKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             HhccCHHHcCCCCCCCCHHHHh
Confidence            99999999997      56664

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1e-33  Score=232.64  Aligned_cols=206  Identities=18%  Similarity=0.216  Sum_probs=163.7

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      +.||+|+||.||+|.+. .++..+++|...               ++++.++||||+++++++......++||||+.+++
T Consensus         1 ~~lg~g~~g~vy~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLR-ADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEe-cCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            47899999999999975 567889998643               37788899999999999999999999999999999


Q ss_pred             HHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc-ccccCC
Q 042690           95 ISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL-TGMRET  161 (266)
Q Consensus        95 L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~-~~~~~~  161 (266)
                      |.+++.... .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........... .....+
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  159 (252)
T cd05084          80 FLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIP  159 (252)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCc
Confidence            999997533 233      34555566678888787776     89999999999999999876432111111 111224


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhcCCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~~p~~  224 (266)
                      ..|+|||.+.+..++.++|+||||+++|+|++ |..|+...                .+...+..+.+++.+|++.+|.+
T Consensus       160 ~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  239 (252)
T cd05084         160 VKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQ  239 (252)
T ss_pred             eeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhh
Confidence            56999999988889999999999999999998 77777531                12234567788999999999999


Q ss_pred             CCCHHHHHHHHH
Q 042690          225 RPSLRIVALMLQ  236 (266)
Q Consensus       225 Rps~~~il~~l~  236 (266)
                      ||++.+++++|+
T Consensus       240 Rps~~~~~~~l~  251 (252)
T cd05084         240 RPSFSTVHQELQ  251 (252)
T ss_pred             CcCHHHHHHHHh
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=243.66  Aligned_cols=205  Identities=17%  Similarity=0.181  Sum_probs=169.3

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      |-++.+||+|+||.||+|.++ ..|+.+|||.+.            .+|++++.|++|++||.+.....+|+|||||-.|
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~-EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHR-ESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHh-ccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCC
Confidence            567889999999999999987 889999999765            3888999999999999999999999999999999


Q ss_pred             CHHHHHhhcCC-CCHHHH---HHHH---HHHhh-----hcCccccceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           94 SISSLLYECLR-PTWQQR---MQDC---IRDCW-----RTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        94 ~L~~~l~~~~~-~~~~~~---l~~~---~~~~~-----~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      ++.+.++.+.+ +...+.   ++..   +.++|     |+++...|||++.+|..||+|||.|..+... -.......||
T Consensus       114 SiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDT-MAKRNTVIGT  192 (502)
T KOG0574|consen  114 SISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDT-MAKRNTVIGT  192 (502)
T ss_pred             cHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhh-HHhhCccccC
Confidence            99999986554 333222   2211   24454     4444455999999999999999999876522 2233457899


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHHHHHHHhhhcCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPVMIAIQFVKEKPP  223 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~~l~~~cl~~~p~  223 (266)
                      +.|||||++..-.|+..+||||||++..||..|++|+..                  ..+..++.++.+++++||--+|+
T Consensus       193 PFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE  272 (502)
T KOG0574|consen  193 PFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPE  272 (502)
T ss_pred             cccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHH
Confidence            999999999988899999999999999999999999977                  23456778899999999999999


Q ss_pred             CCCCHHHHH
Q 042690          224 LRPSLRIVA  232 (266)
Q Consensus       224 ~Rps~~~il  232 (266)
                      +|.++-.++
T Consensus       273 ~R~TA~~L~  281 (502)
T KOG0574|consen  273 ERKTALRLC  281 (502)
T ss_pred             HHHHHHHHh
Confidence            999976554

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=6.8e-34  Score=237.71  Aligned_cols=216  Identities=18%  Similarity=0.245  Sum_probs=172.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      +++|.+.+.||+|+||.||+|.+..    ..+..+|+|.+.               .+++.++||||+++++++...+..
T Consensus         4 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~   83 (283)
T cd05091           4 LSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPL   83 (283)
T ss_pred             HHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCce
Confidence            4578889999999999999998642    235778999875               255678899999999999998899


Q ss_pred             EEEEEcCCCCCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEE
Q 042690           84 LLVYKFMHNRSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~  136 (266)
                      ++++||+.+++|.+++....                .+      .+..++..++.++|.++++|+     |+++++++.+
T Consensus        84 ~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~  163 (283)
T cd05091          84 SMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNV  163 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCce
Confidence            99999999999999985321                12      234567777788888888887     8999999999


Q ss_pred             EEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-------------
Q 042690          137 ETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-------------  201 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-------------  201 (266)
                      +|+|||+++........ ......+++.|+|||++.+..++.++|+||||+++|+|++ |..||...             
T Consensus       164 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~  243 (283)
T cd05091         164 KISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQ  243 (283)
T ss_pred             EecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC
Confidence            99999998765322211 1223445778999999888889999999999999999998 77777551             


Q ss_pred             ---CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          202 ---SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       202 ---~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                         .+......+.+++.+||+.+|.+||++.+|+..|+.|
T Consensus       244 ~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~  283 (283)
T cd05091         244 VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRTW  283 (283)
T ss_pred             cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhCC
Confidence               1233455678999999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=8.8e-34  Score=253.95  Aligned_cols=211  Identities=18%  Similarity=0.196  Sum_probs=170.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      -.+|.+.+.||+|+||+||+|.+. .++..||+|.+.                ..+..++|+|++++++.+....     
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~-~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRV-SDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEc-CCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            358999999999999999999975 678899999763                2466778999999988765322     


Q ss_pred             ---eEEEEEEcCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCc
Q 042690           82 ---CRLLVYKFMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        82 ---~~~lv~e~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                         ..++||||+++|+|.+++....    .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGl  189 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGF  189 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEeccc
Confidence               3679999999999999997532    222      34566777788888888887     89999999999999999


Q ss_pred             ceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccc
Q 042690          144 AKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKT  206 (266)
Q Consensus       144 a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~  206 (266)
                      ++....... .......||+.|+|||++.+..++.++||||||+++|+|++|+.||...                .++..
T Consensus       190 s~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
T PTZ00283        190 SKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYDPLPPSI  269 (496)
T ss_pred             CeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCC
Confidence            986542211 1223456899999999999888999999999999999999999998652                13345


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ...+.+++.+||+.||.+||++.++++.
T Consensus       270 ~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        270 SPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             CHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            5678899999999999999999998764

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=4.8e-34  Score=235.74  Aligned_cols=211  Identities=18%  Similarity=0.268  Sum_probs=172.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .+|.+.+.||.|++|.||+|.+.  .+..+++|.+.              ..++.++||||+++++++......++||||
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~--~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWK--NRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEec--CCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEee
Confidence            46888999999999999999986  47888888865              267788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +++++|.+++....  .+.      +..++..++.++|..+++|+     ||++++++.++|+|||.+...... .....
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~-~~~~~  162 (261)
T cd05148          84 MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKED-VYLSS  162 (261)
T ss_pred             cccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCc-ccccc
Confidence            99999999997532  233      44455566688888887776     899999999999999999765322 11122


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ...++..|++||.+.+..++.++|+||||+++++|++ |+.||....                +......+.+++.+||+
T Consensus       163 ~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  242 (261)
T cd05148         163 DKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWA  242 (261)
T ss_pred             CCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcC
Confidence            3345678999999888889999999999999999998 788886521                23345678899999999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~  237 (266)
                      .||.+||++.++++.|+.
T Consensus       243 ~~p~~Rpt~~~l~~~L~~  260 (261)
T cd05148         243 AEPEDRPSFKALREELDN  260 (261)
T ss_pred             CCchhCcCHHHHHHHHhc
Confidence            999999999999999975

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-33  Score=237.10  Aligned_cols=206  Identities=23%  Similarity=0.296  Sum_probs=168.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|++.+.||+|+||.||++.+. .++..||+|.+.                 .+++.++||||+++++.+..+...++||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVR-ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEc-CCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEE
Confidence            3778899999999999999975 567889998653                 2667889999999999999989999999


Q ss_pred             EcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+++++|.+++....  .++      +..++..++.++|..+++|+     ||++++++.++|+|||++......  ..
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--~~  157 (285)
T cd05605          80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEG--ET  157 (285)
T ss_pred             eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCC--Cc
Confidence            9999999998886432  233      33455566688888888877     899999999999999999865322  22


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~  215 (266)
                      .....++..|+|||++.+..++.++|+||+|+++|+|++|+.||....                   +......+.+++.
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  237 (285)
T cd05605         158 IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICR  237 (285)
T ss_pred             cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHH
Confidence            234568899999999988889999999999999999999999997521                   1234566778999


Q ss_pred             HhhhcCCCCCC-----CHHHHHH
Q 042690          216 QFVKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rp-----s~~~il~  233 (266)
                      +||..||.+||     +++++++
T Consensus       238 ~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         238 QLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             HHccCCHHHhcCCCCCCHHHHhc
Confidence            99999999999     7878854

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=2.3e-33  Score=234.15  Aligned_cols=219  Identities=22%  Similarity=0.289  Sum_probs=173.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCc---ceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDK---TNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~---~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|.+.+.||+|+||.||+|.+...+.   ..||+|.+.               .+++.++||||+++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcEE
Confidence            578899999999999999999753222   247888764               256678999999999998754 4679


Q ss_pred             EEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +|||+++|+|.+++.... .      ..+..++..++.++|..+++|+     ||++++++.++|+|||+++........
T Consensus        86 ~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~  165 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETE  165 (279)
T ss_pred             EEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccce
Confidence            999999999999997643 2      3455667777788888888887     899999999999999999876422221


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~  215 (266)
                       ......++..|++||...+..++.++|||||||++|||++ |..||....                +......+.+++.
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  245 (279)
T cd05109         166 YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMV  245 (279)
T ss_pred             eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcCCCCccCCHHHHHHHH
Confidence             1122334678999999988889999999999999999998 788876411                2233456778999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +||+.||..||++.++++.|+.+...|.
T Consensus       246 ~~l~~dp~~Rp~~~~l~~~l~~~~~~~~  273 (279)
T cd05109         246 KCWMIDSECRPRFRELVDEFSRMARDPS  273 (279)
T ss_pred             HHcCCChhhCcCHHHHHHHHHHhhcCCc
Confidence            9999999999999999999999887764

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.7e-33  Score=236.20  Aligned_cols=217  Identities=18%  Similarity=0.234  Sum_probs=172.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +|++.+.||+|+||.||+|....    .....+++|.+.               .+++.++||||+++++.+..++..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            46788999999999999998631    123457777543               36778899999999999998899999


Q ss_pred             EEEcCCCCCHHHHHhhcCC------------------------------CCHHHHHHHHHHHhhhcCcccc-----ceee
Q 042690           86 VYKFMHNRSISSLLYECLR------------------------------PTWQQRMQDCIRDCWRTRALAC-----RILL  130 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~------------------------------~~~~~~l~~~~~~~~~~~~~h~-----nili  130 (266)
                      +|||+.+++|.+++.....                              +.+..++..++.++|.++++|+     ||++
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill  160 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV  160 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEE
Confidence            9999999999999864321                              2344566677788888888887     8999


Q ss_pred             cCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC------
Q 042690          131 HDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS------  202 (266)
Q Consensus       131 ~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~------  202 (266)
                      ++++.++|+|||+++........ ......++..|+|||.+.+..++.++|+||||+++|+|+| |..||....      
T Consensus       161 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~  240 (290)
T cd05045         161 AEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFN  240 (290)
T ss_pred             cCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence            99999999999999765322221 1122334678999999888889999999999999999998 888886522      


Q ss_pred             ----------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          203 ----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       203 ----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                +......+.+++.+||+.+|.+||++.++++.|+.+...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~~  289 (290)
T cd05045         241 LLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMMVK  289 (290)
T ss_pred             HHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHHhc
Confidence                      223446788999999999999999999999999998654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.4e-33  Score=246.42  Aligned_cols=220  Identities=18%  Similarity=0.202  Sum_probs=174.5

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcC-CCceeeeeeEEEe
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAH-HKNLVCLLGYHIE   79 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~-h~~iv~~~~~~~~   79 (266)
                      ....++|.+.+.||+|+||.||+|.++.    ..+..||+|++.               +++..+. ||||+++++++..
T Consensus        33 ~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~  112 (401)
T cd05107          33 EMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTK  112 (401)
T ss_pred             eecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence            3455678899999999999999999741    245679999876               2566676 9999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcCC-------------------------------------------------------
Q 042690           80 QECRLLVYKFMHNRSISSLLYECLR-------------------------------------------------------  104 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~-------------------------------------------------------  104 (266)
                      .+..++||||+.+|+|.++++....                                                       
T Consensus       113 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (401)
T cd05107         113 GGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPM  192 (401)
T ss_pred             CCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccch
Confidence            8899999999999999999964321                                                       


Q ss_pred             -------------------------------------------CC------HHHHHHHHHHHhhhcCcccc-----ceee
Q 042690          105 -------------------------------------------PT------WQQRMQDCIRDCWRTRALAC-----RILL  130 (266)
Q Consensus       105 -------------------------------------------~~------~~~~l~~~~~~~~~~~~~h~-----nili  130 (266)
                                                                 ++      +..++..++.++|..+++|+     ||++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl  272 (401)
T cd05107         193 QDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLI  272 (401)
T ss_pred             hcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEE
Confidence                                                       11      22356667788888888887     8999


Q ss_pred             cCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC------
Q 042690          131 HDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS------  202 (266)
Q Consensus       131 ~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~------  202 (266)
                      +.++.++|+|||+++........ ......++..|+|||.+.+..++.++|+||||+++|||++ |..||....      
T Consensus       273 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~  352 (401)
T cd05107         273 CEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY  352 (401)
T ss_pred             eCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHH
Confidence            99999999999999865322211 1122346788999999988889999999999999999998 777875411      


Q ss_pred             -----------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          203 -----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       203 -----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                                 +......+.+++.+||..+|..||++++|++.|+...
T Consensus       353 ~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         353 NAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence                       2234467789999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=6.2e-34  Score=243.20  Aligned_cols=197  Identities=17%  Similarity=0.212  Sum_probs=159.5

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||++... .++..+|+|.+..                 ++..+ +||||+++++++...+..++||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~   79 (329)
T cd05618           1 RVIGRGSYAKVLLVRLK-KTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVN   79 (329)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCC
Confidence            46899999999999976 6778899987642                 23333 79999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||+++.... .........|
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~-~~~~~~~~~g  158 (329)
T cd05618          80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-PGDTTSTFCG  158 (329)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccC-CCCccccccC
Confidence            999999987655543      44566677788888888887     89999999999999999875321 1222234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------CCCccccchHHHHHHH
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------~~~~~~~~~~~~l~~~  216 (266)
                      |..|+|||.+.+..++.++|+||||+++|+|++|+.||..                        ..+......+.+++.+
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~  238 (329)
T cd05618         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKS  238 (329)
T ss_pred             CccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence            9999999999988899999999999999999999999842                        1122334566789999


Q ss_pred             hhhcCCCCCCCH
Q 042690          217 FVKEKPPLRPSL  228 (266)
Q Consensus       217 cl~~~p~~Rps~  228 (266)
                      ||+.||.+||++
T Consensus       239 ~L~~dP~~R~~~  250 (329)
T cd05618         239 FLNKDPKERLGC  250 (329)
T ss_pred             HhcCCHHHcCCC
Confidence            999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.7e-34  Score=243.80  Aligned_cols=198  Identities=20%  Similarity=0.157  Sum_probs=163.0

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.+. .++..+|+|.+.                  .+++.++||||+++++++.+.+..++||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   79 (321)
T cd05603           1 KVIGKGSFGKVLLAKRK-SDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVN   79 (321)
T ss_pred             CeeeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCC
Confidence            46899999999999976 678889998753                  14567899999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ........|
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~g  158 (321)
T cd05603          80 GGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP-EETTSTFCG  158 (321)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCC-CCccccccC
Confidence            999999887655433      44566677788888888887     899999999999999998753221 222334568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      ++.|+|||.+.+..++.++|+|||||++|+|++|..||....               ++.....+.+++.+||+.+|.+|
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (321)
T cd05603         159 TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRR  238 (321)
T ss_pred             CcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhc
Confidence            999999999988889999999999999999999999996522               23345567889999999999999


Q ss_pred             CCHH
Q 042690          226 PSLR  229 (266)
Q Consensus       226 ps~~  229 (266)
                      |++.
T Consensus       239 ~~~~  242 (321)
T cd05603         239 LGAK  242 (321)
T ss_pred             CCCC
Confidence            9864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.2e-33  Score=242.07  Aligned_cols=218  Identities=21%  Similarity=0.241  Sum_probs=171.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC-Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ-EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~-~~   82 (266)
                      ++|++.+.||+|+||.||+|....    .++..||+|++.               .+++.+ +|+||+++++++... ..
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            378999999999999999997531    234789999753               255666 799999999988654 56


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC-----------------------------------------------------------
Q 042690           83 RLLVYKFMHNRSISSLLYECL-----------------------------------------------------------  103 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~-----------------------------------------------------------  103 (266)
                      .+++|||+.+++|.+++....                                                           
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            789999999999999986421                                                           


Q ss_pred             --CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccc
Q 042690          104 --RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEW  169 (266)
Q Consensus       104 --~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~  169 (266)
                        .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++......... ......++..|+|||+
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~  246 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPES  246 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHH
Confidence              112      33566677788888888876     899999999999999999865322221 2223345678999999


Q ss_pred             cCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHhhhcCCCCCCCHHHH
Q 042690          170 FRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIV  231 (266)
Q Consensus       170 ~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~i  231 (266)
                      +.+..++.++|||||||++|+|++ |..||....                 +......+.+++.+||+.+|.+||+++++
T Consensus       247 ~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~el  326 (337)
T cd05054         247 IFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSEL  326 (337)
T ss_pred             hcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            999899999999999999999998 988885411                 12234577899999999999999999999


Q ss_pred             HHHHHHHHhC
Q 042690          232 ALMLQSILEV  241 (266)
Q Consensus       232 l~~l~~~~~~  241 (266)
                      ++.|+.+.+.
T Consensus       327 l~~l~~~~~~  336 (337)
T cd05054         327 VEILGDLLQE  336 (337)
T ss_pred             HHHHHHHHhc
Confidence            9999988764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=3.9e-33  Score=230.89  Aligned_cols=214  Identities=18%  Similarity=0.263  Sum_probs=174.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .+|.+.+.||+|++|.||+|... .++..+++|.+.                 ++++.++|+|++++++++...+..+++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv   80 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICL-LDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIV   80 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEc-CCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            47889999999999999999986 578889998653                 367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           87 YKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||+++++|.+++...    ..+      .+..++..++..+|..++.|+     ||+++.++.++|+|||++...... 
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~-  159 (267)
T cd08224          81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK-  159 (267)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCC-
Confidence            9999999999998642    112      334455666677887777776     899999999999999998765422 


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------c-cccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------P-KTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~-~~~~~~~~  212 (266)
                      ........++..|+|||.+.+..++.++|+||||+++|+|++|..||.....                  . .....+.+
T Consensus       160 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (267)
T cd08224         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPLPADHYSEELRD  239 (267)
T ss_pred             CcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCCChhhcCHHHHH
Confidence            1122234578899999998888899999999999999999999998854211                  1 23346788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                      ++.+||..+|.+||++.+|+++|+.+.
T Consensus       240 ~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         240 LVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             HHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            999999999999999999999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.2e-34  Score=244.88  Aligned_cols=200  Identities=18%  Similarity=0.188  Sum_probs=165.1

Q ss_pred             eccCCCcceEEEEEEEc--CCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||++...  ..++..+|+|++.                ++++.++||||+++++++.+++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            57999999999999863  2467889998664                27778899999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++....... .......|
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~g  160 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE-KKAYSFCG  160 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCC-CceecccC
Confidence            999999997655443      45667777788898888887     8999999999999999987653221 22234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      +..|+|||.+.+..++.++|||||||++|+|++|+.||....               +......+.+++.+||+.||.+|
T Consensus       161 ~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R  240 (318)
T cd05582         161 TVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANR  240 (318)
T ss_pred             ChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHc
Confidence            999999999988888999999999999999999999997522               23345677889999999999999


Q ss_pred             CCHHH
Q 042690          226 PSLRI  230 (266)
Q Consensus       226 ps~~~  230 (266)
                      |++.+
T Consensus       241 ~~a~~  245 (318)
T cd05582         241 LGAGP  245 (318)
T ss_pred             CCCCC
Confidence            99544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-34  Score=246.48  Aligned_cols=208  Identities=14%  Similarity=0.123  Sum_probs=166.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++... .++..||+|.+.                 ++++.++||||+++++++.++...|+||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKK-DTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEEC-CCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            6788999999999999999976 678889999653                 2666789999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-----
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-----  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-----  151 (266)
                      ||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+++......     
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~  160 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYY  160 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccccccccc
Confidence            9999999999997655543      45667777789998888887     8999999999999999986321100     


Q ss_pred             -------cc----------------------------------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHH
Q 042690          152 -------TQ----------------------------------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLE  190 (266)
Q Consensus       152 -------~~----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~  190 (266)
                             ..                                  ......||+.|+|||++.+..++.++|+|||||++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~e  240 (377)
T cd05629         161 QKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFE  240 (377)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhh
Confidence                   00                                  0012458999999999988889999999999999999


Q ss_pred             HHhCCCcccCCCC-------------------ccccchHHHHHHHhhhcCCCCC---CCHHHHHHH
Q 042690          191 IISCRCVERQGSD-------------------PKTLEKPVMIAIQFVKEKPPLR---PSLRIVALM  234 (266)
Q Consensus       191 l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~cl~~~p~~R---ps~~~il~~  234 (266)
                      |++|..||.....                   ......+.+++.+|+. +|.+|   +++.+++..
T Consensus       241 lltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~h  305 (377)
T cd05629         241 CLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSH  305 (377)
T ss_pred             hhcCCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcC
Confidence            9999999865221                   0134566789999997 66665   588888754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.9e-33  Score=234.97  Aligned_cols=200  Identities=21%  Similarity=0.257  Sum_probs=162.9

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||+|+||+||++.++ .+++.+|+|.+.                 .+++.++||||+++.+++..+...++||||+++++
T Consensus         1 lg~G~~g~Vy~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMR-ATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEc-cCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            699999999999976 678889998763                 26778899999999999999999999999999999


Q ss_pred             HHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           95 ISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        95 L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |.+++...    ..+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++........ ......
T Consensus        80 L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~  158 (280)
T cd05608          80 LRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS-KTKGYA  158 (280)
T ss_pred             HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc-cccccC
Confidence            99887431    222      244556677788898888887     89999999999999999976542221 223356


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHHhhhc
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      +++.|+|||.+.+..++.++|+||||+++|+|++|+.||....                   +......+.+++.+||+.
T Consensus       159 g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  238 (280)
T cd05608         159 GTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAK  238 (280)
T ss_pred             CCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcC
Confidence            8899999999998899999999999999999999999986421                   123456778899999999


Q ss_pred             CCCCCC-----CHHHHHH
Q 042690          221 KPPLRP-----SLRIVAL  233 (266)
Q Consensus       221 ~p~~Rp-----s~~~il~  233 (266)
                      ||.+||     +++++++
T Consensus       239 ~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         239 DPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             CHHHhcCCCCCCHHHHhc
Confidence            999999     5667764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.6e-33  Score=231.94  Aligned_cols=208  Identities=20%  Similarity=0.244  Sum_probs=170.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|.+.+.||+|+||.||++.+. .++..+++|.+.               .+++.++|||++++++.+..++..+++|||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHV-NSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEc-CCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEee
Confidence            4778899999999999999976 577888988653               267788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +++++|.+++....  .      ..+..++..++..+|.+++.|.     ||+++.++.++++|||.+...... .....
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~-~~~~~  158 (255)
T cd08219          80 CDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSP-GAYAC  158 (255)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccc-ccccc
Confidence            99999999886432  1      2345667777788888887776     899999999999999999765422 22222


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ...++..|+|||++.+..++.++|+||||+++|+|++|..||....                +......+.+++.+||+.
T Consensus       159 ~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  238 (255)
T cd08219         159 TYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKR  238 (255)
T ss_pred             cccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhC
Confidence            3557889999999988889999999999999999999999987522                122345677899999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      ||.+||++++++..
T Consensus       239 ~P~~Rp~~~~il~~  252 (255)
T cd08219         239 NPRSRPSATTILSR  252 (255)
T ss_pred             CcccCCCHHHHhhc
Confidence            99999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=2.7e-33  Score=230.41  Aligned_cols=208  Identities=21%  Similarity=0.244  Sum_probs=169.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||++.+. .++..+++|.+.                ++++.++|||++++++++..++..++|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRK-ADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEc-CCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEE
Confidence            4678899999999999999976 667888998653                36788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++++|.+++...  ..+.      +..++..++.++|..++.|+     ||+++.++.++|+|||++....... ...
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~-~~~  158 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNT-NFA  158 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCcc-chh
Confidence            99999999999764  2232      34456666677787777776     8999999999999999988754322 122


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ....++..|+|||...+..++.++|+||||+++|+|++|+.||....                +......+.+++.+||+
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  238 (256)
T cd08529         159 NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLT  238 (256)
T ss_pred             hccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcc
Confidence            23457889999999988889999999999999999999999986522                11334567899999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 042690          220 EKPPLRPSLRIVALM  234 (266)
Q Consensus       220 ~~p~~Rps~~~il~~  234 (266)
                      .+|++||++.++++.
T Consensus       239 ~~p~~Rp~~~~ll~~  253 (256)
T cd08529         239 KDYRQRPDTFQLLRN  253 (256)
T ss_pred             CCcccCcCHHHHhhC
Confidence            999999999999863

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.5e-33  Score=235.48  Aligned_cols=217  Identities=18%  Similarity=0.245  Sum_probs=172.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      ..+|.+.+.||+|+||.||++.+..    .....+++|...               .+++.+ +|+||+++++++..++.
T Consensus        11 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~   90 (293)
T cd05053          11 RDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGP   90 (293)
T ss_pred             HhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCC
Confidence            3578899999999999999998742    234678888654               255566 79999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCE
Q 042690           83 RLLVYKFMHNRSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFT  135 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~  135 (266)
                      .+++|||+.+++|.+++....                .+      .+..++..++.++|..+++|+     ||+++.++.
T Consensus        91 ~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~  170 (293)
T cd05053          91 LYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHV  170 (293)
T ss_pred             eEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCe
Confidence            999999999999999996431                12      245667777788888888887     899999999


Q ss_pred             EEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC------------
Q 042690          136 VETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG------------  201 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~------------  201 (266)
                      ++|+|||+++........ ......++..|+|||.+.+..++.++|||||||++|+|++ |..||...            
T Consensus       171 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~  250 (293)
T cd05053         171 MKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEG  250 (293)
T ss_pred             EEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcC
Confidence            999999999865432211 1122234567999999888889999999999999999997 87787642            


Q ss_pred             ----CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          202 ----SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       202 ----~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                          .+......+.+++.+|+..||.+|||+.++++.|+.+.
T Consensus       251 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         251 YRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             CcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence                12234467889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=9.1e-34  Score=246.09  Aligned_cols=208  Identities=17%  Similarity=0.226  Sum_probs=168.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----eE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----CR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----~~   83 (266)
                      +|++.+.||+|+||.||++... .++..||+|++.                ++++.++||||+++++++....     ..
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   79 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDP-RDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEI   79 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEEC-CCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceE
Confidence            4678899999999999999975 578899999763                2677889999999999998766     78


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+.+ +|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        80 ~lv~e~~~~-~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~  158 (372)
T cd07853          80 YVVTELMQS-DLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES  158 (372)
T ss_pred             EEEeecccc-CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCcc
Confidence            999999974 8888887655544      44567777788898888887     89999999999999999987543333


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+. .++.++||||+||++|+|++|+.||....+                            
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~  238 (372)
T cd07853         159 KHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARA  238 (372)
T ss_pred             ccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHH
Confidence            333445678899999988764 478899999999999999999999854211                            


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                         ......+.+++.+||+.||.+||++.++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         239 HILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                               1123466789999999999999999999853

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=3.3e-33  Score=231.27  Aligned_cols=212  Identities=22%  Similarity=0.295  Sum_probs=168.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      +.|.+.++||+|++|.||+|.+.  ....+++|.+.             .+++.++||||+++++++. ....++||||+
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~--~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWN--GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEec--CCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            46999999999999999999874  33568888765             3677889999999999874 45578999999


Q ss_pred             CCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+++|.+++....  .++      +..++..++..+|..+++|+     ||++++++.++|+|||.+.............
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~  162 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG  162 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccC
Confidence            9999999997532  223      34455566677887777776     8999999999999999997654322222223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|++||...+..++.++|+||||+++|+|+| |..||....                .......+.+++.+|++.
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  242 (262)
T cd05071         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRK  242 (262)
T ss_pred             CcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccC
Confidence            345678999999888889999999999999999999 777775421                223456788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~  238 (266)
                      +|.+||++.++++.|+..
T Consensus       243 ~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         243 EPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             CcccCCCHHHHHHHHHHh
Confidence            999999999999999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=3.1e-33  Score=235.50  Aligned_cols=220  Identities=19%  Similarity=0.237  Sum_probs=171.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCC-CcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPG-DKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~-~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++|.+.+.||+|+||.||+|..... ....+++|.+.               .+++++ +||||+++++++...+..++
T Consensus         1 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l   80 (297)
T cd05089           1 WEDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYI   80 (297)
T ss_pred             CccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceE
Confidence            36789999999999999999987522 22345666554               245566 69999999999998889999


Q ss_pred             EEEcCCCCCHHHHHhhcC----------------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           86 VYKFMHNRSISSLLYECL----------------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~----------------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      +|||+++++|.+++....                .      ..+..++..++.++|.++++|+     |++++.++.++|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl  160 (297)
T cd05089          81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKI  160 (297)
T ss_pred             EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEE
Confidence            999999999999997532                1      2244556667788888888887     899999999999


Q ss_pred             eecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC---------------
Q 042690          139 SDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS---------------  202 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~---------------  202 (266)
                      +|||++.....  .........+..|+|||.+.+..++.++||||||+++|+|++ |..||....               
T Consensus       161 ~dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~~~  238 (297)
T cd05089         161 ADFGLSRGEEV--YVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRME  238 (297)
T ss_pred             CCcCCCccccc--eeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCC
Confidence            99999864321  111111223457999999988889999999999999999997 888886521               


Q ss_pred             -CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          203 -DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       203 -~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                       +......+.+++.+||+.+|.+||+++++++.|+.+....+.
T Consensus       239 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~  281 (297)
T cd05089         239 KPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA  281 (297)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence             223456778999999999999999999999999998776543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-33  Score=233.94  Aligned_cols=214  Identities=19%  Similarity=0.241  Sum_probs=172.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.++.    .++..+++|.+.               .+++.++||||+++++++......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            3578899999999999999998752    234678888764               366788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC----------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           84 LLVYKFMHNRSISSLLYECLR----------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                      ++||||+.+++|.+++.....                ..+..++..++.++|..+++|+     ||+++.++.++|+|||
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg  164 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFG  164 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcc
Confidence            999999999999999974321                2244556666788888888877     8999999999999999


Q ss_pred             cceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCc
Q 042690          143 LAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDP  204 (266)
Q Consensus       143 ~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~  204 (266)
                      +++........ ......++..|+|||.+.+..++.++|+||||+++|+++| |..||...                .+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~  244 (277)
T cd05032         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPE  244 (277)
T ss_pred             cchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCCCCCCCC
Confidence            98765432221 1223445778999999888889999999999999999998 88887541                233


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      .....+.+++.+||+.+|.+||++.++++.|+
T Consensus       245 ~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         245 NCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             CCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence            45577889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=2.1e-33  Score=231.97  Aligned_cols=211  Identities=23%  Similarity=0.304  Sum_probs=168.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ++|.+.++||+|++|.||+|.+.  ++..+++|.+.             .+++.++|+|++++++++. ....+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~--~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWN--GNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccCceEEEEEec--CCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            46888999999999999999874  55668888765             3788899999999999875 45678999999


Q ss_pred             CCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+++|.+++....  .+      .+..++..++.++|.++++|+     |+++++++.++|+|||++.............
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05070          83 SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQG  162 (260)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccC
Confidence            9999999997532  23      344556666788888888877     8999999999999999998754322222222


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +......+.+++.+|+..
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  242 (260)
T cd05070         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKK  242 (260)
T ss_pred             CCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHccc
Confidence            335668999999888889999999999999999999 788886521                223456778999999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQS  237 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~  237 (266)
                      +|.+||+++++.+.|+.
T Consensus       243 ~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         243 DPEERPTFEYLQSFLED  259 (260)
T ss_pred             CcccCcCHHHHHHHHhc
Confidence            99999999999998875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.7e-33  Score=234.87  Aligned_cols=199  Identities=22%  Similarity=0.253  Sum_probs=162.6

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||+|+||.||++..+ .++..+|+|.+.                 ++++.++||||+++++++..+...++||||+.+++
T Consensus         1 lg~G~~g~Vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVK-NTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEc-cCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            699999999999976 568889988653                 36778899999999999999999999999999999


Q ss_pred             HHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           95 ISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        95 L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      |.+++.....  +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++......  .......++
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~  157 (277)
T cd05607          80 LKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG--KTITQRAGT  157 (277)
T ss_pred             HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCC--ceeeccCCC
Confidence            9988864332  22      33456667788888888887     899999999999999998765422  122335678


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------------CccccchHHHHHHHhhhcC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ..|+|||.+.+..++.++|+||+|+++|+|++|..||....                    .......+.+++.+||+.|
T Consensus       158 ~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~  237 (277)
T cd05607         158 NGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKK  237 (277)
T ss_pred             CCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccC
Confidence            99999999988889999999999999999999999986411                    1124556789999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+||+++|+++
T Consensus       238 P~~R~~~~~~~~  249 (277)
T cd05607         238 PEDRLGSREKND  249 (277)
T ss_pred             HhhCCCCccchh
Confidence            999999977653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.9e-33  Score=232.88  Aligned_cols=213  Identities=18%  Similarity=0.253  Sum_probs=173.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||.|++|.||++.+. .++..+++|.+.                 .+++.++||||+++++++..++..+++
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~-~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v   80 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCL-LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV   80 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeec-CCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEE
Confidence            57888899999999999999975 577889998542                 367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           87 YKFMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||+++++|.+++...    ..++      +..++..++.++|..++.|.     ||+++.++.++|+|||++...... 
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~-  159 (267)
T cd08229          81 LELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSK-  159 (267)
T ss_pred             EEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccC-
Confidence            9999999999998632    2233      33456666688887777776     899999999999999998765322 


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~  212 (266)
                      ........++..|+|||.+.+..++.++|+||||+++|+|++|..||.....                   ......+.+
T Consensus       160 ~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (267)
T cd08229         160 TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQ  239 (267)
T ss_pred             CcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCCCcccccHHHHH
Confidence            1222334678899999999888889999999999999999999999864211                   123456788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ++.+||..+|.+||++.+|+++++++
T Consensus       240 li~~~l~~~p~~Rpt~~~i~~~~~~~  265 (267)
T cd08229         240 LVNMCINPDPEKRPDITYVYDVAKRM  265 (267)
T ss_pred             HHHHhcCCCcccCCCHHHHHHHHhhh
Confidence            99999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.3e-33  Score=237.09  Aligned_cols=220  Identities=19%  Similarity=0.234  Sum_probs=172.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCC-CcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPG-DKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~-~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+.+|.+.+.||+|+||.||+|.++.. ....+++|...               +++..+ +||||+++++++...+..+
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~   84 (303)
T cd05088           5 EWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY   84 (303)
T ss_pred             chhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCce
Confidence            356889999999999999999997522 22345776543               245667 7999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC----------------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEE
Q 042690           85 LVYKFMHNRSISSLLYECLR----------------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVE  137 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~----------------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~  137 (266)
                      +||||+++++|.+++.....                      ..+..++..++.++|..+++|+     |++++.++.++
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~k  164 (303)
T cd05088          85 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAK  164 (303)
T ss_pred             EEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEE
Confidence            99999999999999975321                      2234556667788888888887     89999999999


Q ss_pred             EeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC--------------
Q 042690          138 TSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS--------------  202 (266)
Q Consensus       138 l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~--------------  202 (266)
                      |+|||++......  ........+..|+|||.+.+..++.++||||||+++|+|+| |..||....              
T Consensus       165 l~dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~  242 (303)
T cd05088         165 IADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRL  242 (303)
T ss_pred             eCccccCcccchh--hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCcC
Confidence            9999998642211  11111223567999999888888999999999999999998 888885411              


Q ss_pred             --CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          203 --DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       203 --~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                        +......+.+++.+||+.+|.+||++++++..|+.+.+.-.
T Consensus       243 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~  285 (303)
T cd05088         243 EKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  285 (303)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhh
Confidence              12234677899999999999999999999999998866543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=3.7e-33  Score=235.75  Aligned_cols=221  Identities=19%  Similarity=0.234  Sum_probs=175.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc------CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA------PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIE   79 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~   79 (266)
                      ...+|.+.+.||+|+||.||+|.+.      ..++..+++|...               ..++.+ +||||+++++++..
T Consensus        13 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~   92 (304)
T cd05101          13 SRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ   92 (304)
T ss_pred             cHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEec
Confidence            3568899999999999999999752      1234578888764               256667 79999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcCC----------------C------CHHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           80 QECRLLVYKFMHNRSISSLLYECLR----------------P------TWQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~----------------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      ....+++|||+.+++|.+++.....                +      .+..++..++.++|.++++|+     ||+++.
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~  172 (304)
T cd05101          93 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTE  172 (304)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcC
Confidence            9999999999999999999975421                1      234567777788888888887     899999


Q ss_pred             CCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC---------
Q 042690          133 YFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG---------  201 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~---------  201 (266)
                      ++.++|+|||+++........ ......++..|+|||++.+..++.++||||||+++|+|++ |..|+...         
T Consensus       173 ~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~  252 (304)
T cd05101         173 NNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL  252 (304)
T ss_pred             CCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHH
Confidence            999999999999876422221 1222345678999999988889999999999999999998 66676541         


Q ss_pred             -------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          202 -------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       202 -------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                             .+......+.+++.+||..+|.+||++.++++.|+.+....
T Consensus       253 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~~  300 (304)
T cd05101         253 KEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTLT  300 (304)
T ss_pred             HcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHhh
Confidence                   12234467888999999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.4e-33  Score=236.57  Aligned_cols=211  Identities=19%  Similarity=0.308  Sum_probs=169.4

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++.+++|.+.+.||+|+||.||+|..+ .++..||+|.+.               .+++.++||||+++++++..++..+
T Consensus         2 ~~~~~~y~~~~~lg~g~~g~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~   80 (301)
T cd07873           2 FGKLETYIKLDKLGEGTYATVYKGRSK-LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLT   80 (301)
T ss_pred             CccccceEEeeEeccCcCEEEEEEEEc-CCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEE
Confidence            466789999999999999999999975 577889998764               3777889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+ +|.+++..... +      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...... .
T Consensus        81 lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~-~  158 (301)
T cd07873          81 LVFEYLDK-DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIP-T  158 (301)
T ss_pred             EEEecccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCC-C
Confidence            99999975 99998875432 2      244556667788888888887     899999999999999999764321 1


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+. .++.++||||||+++|+|+||+.||.....                            
T Consensus       159 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (301)
T cd07873         159 KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF  238 (301)
T ss_pred             CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccc
Confidence            222334568899999987653 478899999999999999999998864211                            


Q ss_pred             -----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.....+.+++.+|+..||.+|||++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         239 KSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                             112335568999999999999999999885

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=4.7e-33  Score=258.02  Aligned_cols=218  Identities=17%  Similarity=0.216  Sum_probs=175.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++|.+.+.||+|+||.||+|.+. .+++.||+|++.                 ++++.++||||+++++++.+.+..++
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~-~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyL   79 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDP-VCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYY   79 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEEC-CCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEE
Confidence            468899999999999999999975 568889999763                 36678899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcC-----------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCc
Q 042690           86 VYKFMHNRSISSLLYECL-----------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-----------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      +|||+++++|.+++....           .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||+
T Consensus        80 VMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGL  159 (932)
T PRK13184         80 TMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGA  159 (932)
T ss_pred             EEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCc
Confidence            999999999999986421           1      1234566667788888888887     89999999999999999


Q ss_pred             ceeeccccc-----------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC---
Q 042690          144 AKLLMINQT-----------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD---  203 (266)
Q Consensus       144 a~~~~~~~~-----------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---  203 (266)
                      +........                 .......||+.|+|||++.+..++.++|||||||++|+|+||+.||.....   
T Consensus       160 Ak~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki  239 (932)
T PRK13184        160 AIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI  239 (932)
T ss_pred             ceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhh
Confidence            986521100                 011124689999999999988999999999999999999999999865221   


Q ss_pred             ---------------ccccchHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHHhC
Q 042690          204 ---------------PKTLEKPVMIAIQFVKEKPPLRP-SLRIVALMLQSILEV  241 (266)
Q Consensus       204 ---------------~~~~~~~~~l~~~cl~~~p~~Rp-s~~~il~~l~~~~~~  241 (266)
                                     ...+..+.+++.+|++.||.+|| +++++++.|+.+...
T Consensus       240 ~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        240 SYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             hhhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence                           12345577899999999999996 577888888888654

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=5.4e-33  Score=234.05  Aligned_cols=210  Identities=17%  Similarity=0.177  Sum_probs=171.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ...+|.+.+.||+|++|.||+|... .++..+++|.+.              .+++.++|||++++++.+..+...++||
T Consensus        18 ~~~~y~~~~~lg~g~~~~v~~~~~~-~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          18 PKKKYTRFEKIGQGASGTVYTAMDV-ATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             cccceeeEEEecCCCCeEEEEEEEC-CCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            3458999999999999999999965 567789988664              3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           88 KFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      ||+++++|.+++.....     ..+..++..++.++|..++.|+     ||+++.++.++|+|||++....... .....
T Consensus        97 e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~-~~~~~  175 (296)
T cd06654          97 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-SKRST  175 (296)
T ss_pred             cccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccc-cccCc
Confidence            99999999999865321     2344456666788888888777     8999999999999999987643221 12223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhh
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~  219 (266)
                      ..+++.|+|||.+.+..++.++|+||||+++|+|++|+.||....                  +......+.+++.+||.
T Consensus       176 ~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  255 (296)
T cd06654         176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLD  255 (296)
T ss_pred             ccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCc
Confidence            467889999999888888999999999999999999999986522                  12233567789999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .+|.+||+++++++
T Consensus       256 ~~p~~Rpt~~eil~  269 (296)
T cd06654         256 MDVEKRGSAKELLQ  269 (296)
T ss_pred             CCcccCcCHHHHhh
Confidence            99999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=6.5e-33  Score=232.55  Aligned_cols=219  Identities=21%  Similarity=0.238  Sum_probs=173.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -.+|.+.+.||+|+||.||+|..+.    ..+..+|+|.+.               ..++.++||||+++++++......
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            3578999999999999999997642    235578998653               267788999999999999888889


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC----------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           84 LLVYKFMHNRSISSLLYECLR----------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                      ++||||+.+++|.+++.....                ..+..++..++.++|.++++|+     ||+++.++.++|+|||
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg  164 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG  164 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCC
Confidence            999999999999999975321                1244566677788888888877     8999999999999999


Q ss_pred             cceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Cc
Q 042690          143 LAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DP  204 (266)
Q Consensus       143 ~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~  204 (266)
                      +++......... .....++..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd05061         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPD  244 (288)
T ss_pred             ccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCC
Confidence            987643222211 112334678999999988889999999999999999998 677775411                12


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .....+.+++.+|++.+|.+||++.++++.|++...+
T Consensus       245 ~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~  281 (288)
T cd05061         245 NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHP  281 (288)
T ss_pred             CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCC
Confidence            2346788999999999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=4.9e-33  Score=229.10  Aligned_cols=211  Identities=23%  Similarity=0.313  Sum_probs=169.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.+.||+|++|.||++.+.  .+..+++|.+.             ++++.++|||++++++++......+++|||
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWL--EKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEF   80 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEe--CCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEc
Confidence            457889999999999999999874  45678888655             377889999999999999988899999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +.+++|.+++.... .+.      +..++..++..+|..+++|+     |++++.++.++|+|||++.............
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~  160 (256)
T cd05112          81 MEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTG  160 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCC
Confidence            99999999997532 233      33445555677777777766     8999999999999999987654322222223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ...+..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +......+.+++.+||+.
T Consensus       161 ~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  240 (256)
T cd05112         161 TKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKE  240 (256)
T ss_pred             CccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccc
Confidence            345678999999988889999999999999999998 888886421                222456678999999999


Q ss_pred             CCCCCCCHHHHHHHH
Q 042690          221 KPPLRPSLRIVALML  235 (266)
Q Consensus       221 ~p~~Rps~~~il~~l  235 (266)
                      +|.+||++.++++.|
T Consensus       241 ~p~~Rp~~~~~l~~l  255 (256)
T cd05112         241 RPEDRPSFSLLLHQL  255 (256)
T ss_pred             ChhhCCCHHHHHHhh
Confidence            999999999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-35  Score=250.83  Aligned_cols=201  Identities=18%  Similarity=0.184  Sum_probs=166.5

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      |..++.||.|+||.||-|++. .+...||||++.                 +.+++++|||++.+.|+|..+...|||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~-~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDV-RNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHhcCCccceeEEeecc-CccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            556789999999999999975 678889999886                 37789999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-CCCHHHHHH------HHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECL-RPTWQQRMQ------DCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~~~~~~l~------~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||-| +..+++.-.. .+...+.-+      ..+.++|+++.||+     |||+++.|.+||+|||.|....     +..
T Consensus       107 YClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~-----PAn  180 (948)
T KOG0577|consen  107 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMA-----PAN  180 (948)
T ss_pred             HHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcC-----chh
Confidence            9976 8888776433 343333333      33377777777776     9999999999999999998754     345


Q ss_pred             cccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHH
Q 042690          157 GMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~  216 (266)
                      ..+||+.|||||++.   .+.|+-++||||||+++.||..+++|...                 -..++++..+..++..
T Consensus       181 sFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~  260 (948)
T KOG0577|consen  181 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDS  260 (948)
T ss_pred             cccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHH
Confidence            578999999999765   56799999999999999999999998766                 2346677888999999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+--|.+|||.+++++
T Consensus       261 CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  261 CLQKIPQERPTSEELLK  277 (948)
T ss_pred             HHhhCcccCCcHHHHhh
Confidence            99999999999887653

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=3.4e-33  Score=233.36  Aligned_cols=214  Identities=19%  Similarity=0.215  Sum_probs=170.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++...++||+|+||.||++...    ..++..+++|.+.              +.++.++|+||+++++++......+
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            357788999999999999999742    2356678887654              3677889999999999999888999


Q ss_pred             EEEEcCCCCCHHHHHhhcC---------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           85 LVYKFMHNRSISSLLYECL---------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~---------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      ++|||+.+++|.+++....               .+      .+..++..++.++|..+++|+     ||++++++.++|
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL  163 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKI  163 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEE
Confidence            9999999999999997542               12      334566667788888888887     899999999999


Q ss_pred             eecCcceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC--------------
Q 042690          139 SDLGLAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS--------------  202 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~--------------  202 (266)
                      +|||++.......... .....+++.|+|||.+.+..++.++|+||||+++|+|++ |..||....              
T Consensus       164 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~  243 (280)
T cd05092         164 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGREL  243 (280)
T ss_pred             CCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCccC
Confidence            9999997653222111 112334678999999988889999999999999999998 888885411              


Q ss_pred             --CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 --DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 --~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                        +...+..+.+++.+||+.||.+||+++++++.|+
T Consensus       244 ~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         244 ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence              2234567789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=4.7e-33  Score=229.54  Aligned_cols=207  Identities=20%  Similarity=0.235  Sum_probs=165.2

Q ss_pred             eccCCCcceEEEEEEEc-CCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLA-PGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~-~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      ++||+|+||.||+|.++ ..++..+++|++.                .+++.++||||+++++++. ....++||||+.+
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~   79 (257)
T cd05116           1 GELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAEL   79 (257)
T ss_pred             CcCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCC
Confidence            36899999999999763 3467889999764                2677889999999999875 4467899999999


Q ss_pred             CCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--cccccc
Q 042690           93 RSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--TLTGMR  159 (266)
Q Consensus        93 ~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~  159 (266)
                      ++|.+++.....+      .+..++..++..+|..+++|+     |++++.++.++|+|||++.........  ......
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  159 (257)
T cd05116          80 GPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGK  159 (257)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCC
Confidence            9999999765443      344556666688888888777     899999999999999999875432221  111223


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhhcCC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~~~p  222 (266)
                      ++..|+|||.+.+..++.++|+||||+++|+|++ |..||..                ..+......+.+++.+||+.||
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p  239 (257)
T cd05116         160 WPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGV  239 (257)
T ss_pred             CCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCc
Confidence            4578999999888788899999999999999998 8888864                1233456788899999999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 042690          223 PLRPSLRIVALMLQS  237 (266)
Q Consensus       223 ~~Rps~~~il~~l~~  237 (266)
                      .+||++++|.+.|+.
T Consensus       240 ~~Rp~~~~i~~~l~~  254 (257)
T cd05116         240 DERPGFAVVELRLRN  254 (257)
T ss_pred             hhCcCHHHHHHHHhc
Confidence            999999999998874

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=5.3e-33  Score=228.12  Aligned_cols=205  Identities=19%  Similarity=0.223  Sum_probs=162.9

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      +.||+|++|.||+|...  ++..+++|.+.               ..++.++||||+++++++...+..++||||+++++
T Consensus         1 ~~ig~g~~g~vy~~~~~--~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK--DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEec--CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCc
Confidence            36899999999999864  67788998753               37778899999999999999889999999999999


Q ss_pred             HHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCC
Q 042690           95 ISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK  162 (266)
Q Consensus        95 L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~  162 (266)
                      |.+++.... .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...............++.
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~  158 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPI  158 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcc
Confidence            999987533 233      33444455577777777776     899999999999999999764322111111223456


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhcCCCCC
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      .|+|||.+.+..++.++|+||||+++|++++ |..||...                .+......+.+++.+|++.+|.+|
T Consensus       159 ~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  238 (250)
T cd05085         159 KWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENR  238 (250)
T ss_pred             cccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccC
Confidence            7999999888888999999999999999998 88888651                123345778899999999999999


Q ss_pred             CCHHHHHHHHH
Q 042690          226 PSLRIVALMLQ  236 (266)
Q Consensus       226 ps~~~il~~l~  236 (266)
                      |++.++++.|.
T Consensus       239 p~~~~l~~~l~  249 (250)
T cd05085         239 PKFSELQKELA  249 (250)
T ss_pred             CCHHHHHHHhc
Confidence            99999998875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=4.7e-33  Score=229.87  Aligned_cols=211  Identities=24%  Similarity=0.333  Sum_probs=170.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ..|++.++||+|+||.||+|..+  ++..+++|.+.             .+++.++|+|++++++++. .+..+++|||+
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~--~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYN--GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             HHceeeeeeccCccceEEeeecC--CCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcC
Confidence            47889999999999999999974  56779998665             3778899999999999864 45689999999


Q ss_pred             CCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+++|.+++....  .+      .+..++..++.++|..+++|+     |++++.++.++|+|||++.............
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05067          83 ENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREG  162 (260)
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccC
Confidence            9999999986532  22      244566667788888888887     8999999999999999997754222222223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCCC----------------ccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGSD----------------PKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~~----------------~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|++++ |+.||.....                ......+.+++.+|++.
T Consensus       163 ~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  242 (260)
T cd05067         163 AKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKE  242 (260)
T ss_pred             CcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccC
Confidence            345678999999888888999999999999999999 8989864221                22345788999999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQS  237 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~  237 (266)
                      +|.+||++++++..|+.
T Consensus       243 ~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         243 KPEERPTFEYLRSVLED  259 (260)
T ss_pred             ChhhCCCHHHHHHHhhc
Confidence            99999999999998874

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=7.4e-33  Score=231.54  Aligned_cols=214  Identities=18%  Similarity=0.232  Sum_probs=167.6

Q ss_pred             eeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC--CeEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ--ECRLL   85 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~--~~~~l   85 (266)
                      |++.+.||+|+||+||++..+   ..++..+++|.+.               ++++.++||||+++++++...  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            478899999999999887642   2467788888764               277788999999999987653  45789


Q ss_pred             EEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--
Q 042690           86 VYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                      +|||+.+++|.+++....-     ..+..++..++.++|..+++|+     ||+++.++.++|+|||++.........  
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  165 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYR  165 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhc
Confidence            9999999999999975321     2344556666688888888776     899999999999999999865422211  


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------------------  202 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------------------  202 (266)
                      ......++..|++||.+.+..++.++|+||||+++|+|+||..|+....                               
T Consensus       166 ~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (283)
T cd05080         166 VREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPC  245 (283)
T ss_pred             cCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCC
Confidence            1122334567999999888888999999999999999999998874311                               


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                      +......+.+++.+||+.+|.+||+++++++.|+.+.
T Consensus       246 ~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         246 PKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             CCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            1223457788999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=6.7e-33  Score=234.57  Aligned_cols=219  Identities=19%  Similarity=0.230  Sum_probs=172.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC------CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP------GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~------~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      .++|.+.+.||+|+||.||++.+..      .....+|+|.+.               ++++.+ +||||+++++++...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            4689999999999999999998631      123468888664               245556 799999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcC----------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690           81 ECRLLVYKFMHNRSISSLLYECL----------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~----------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                      ...++||||+.+++|.+++....                .+.      +..++..++.++|.++++|+     ||+++.+
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~  176 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED  176 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCC
Confidence            99999999999999999997532                133      34556667788888888887     8999999


Q ss_pred             CEEEEeecCcceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------
Q 042690          134 FTVETSDLGLAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------  201 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------  201 (266)
                      +.++|+|||++.......... .....++..|+|||.+.+..++.++|+||||+++|+|++ |..||...          
T Consensus       177 ~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~  256 (307)
T cd05098         177 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLK  256 (307)
T ss_pred             CcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHH
Confidence            999999999987653221111 112234568999999988889999999999999999998 77777541          


Q ss_pred             ------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          202 ------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       202 ------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                            .+......+.+++.+||..+|.+||++.++++.|+.+.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         257 EGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             cCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence                  1223456778899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2.1e-33  Score=248.54  Aligned_cols=212  Identities=17%  Similarity=0.203  Sum_probs=165.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeC--------CeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQ--------ECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~--------~~~~   84 (266)
                      ...|.+.+.||+|+||.||+|.+. .++..||+|++.          .+++.++||||+++++++...        ..++
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~-~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICI-DTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEEC-CCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEE
Confidence            346999999999999999999975 577889999753          488899999999999887432        1367


Q ss_pred             EEEEcCCCCCHHHHHhh----cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeec
Q 042690           85 LVYKFMHNRSISSLLYE----CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLM  148 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~----~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~  148 (266)
                      +||||+.+ +|.+++..    ...+.      +..++..++.++|..+++|+     ||+++.++ .+||+|||+++...
T Consensus       144 lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        144 VVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             EEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            99999975 78777753    22232      33467777789998888888     89998665 79999999998654


Q ss_pred             cccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc-----------------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP-----------------------  204 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-----------------------  204 (266)
                      ..  .......+|+.|+|||++.+. .++.++|||||||++|+|++|.+||.+....                       
T Consensus       223 ~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~  300 (440)
T PTZ00036        223 AG--QRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNP  300 (440)
T ss_pred             CC--CCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhch
Confidence            22  222345679999999987654 6899999999999999999999998753210                       


Q ss_pred             ---------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHH
Q 042690          205 ---------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSI  238 (266)
Q Consensus       205 ---------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~  238 (266)
                                           ..+..+.+++.+||+.||.+||++.++++.  +..+
T Consensus       301 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~  357 (440)
T PTZ00036        301 NYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDL  357 (440)
T ss_pred             hhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhh
Confidence                                 123467889999999999999999999843  4444

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.5e-33  Score=229.58  Aligned_cols=213  Identities=19%  Similarity=0.246  Sum_probs=168.1

Q ss_pred             eeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCe-----
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQEC-----   82 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~-----   82 (266)
                      |++.+.||+|+||.||+|.+...  .+..+|+|++.                +.++.++||||+++++++.....     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            46788999999999999987522  34678998764                26678899999999998866543     


Q ss_pred             -EEEEEEcCCCCCHHHHHhhcC------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           83 -RLLVYKFMHNRSISSLLYECL------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        83 -~~lv~e~~~~~~L~~~l~~~~------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                       .+++|||+++++|..++....      .++      +..++..++.++|..+++|+     ||++++++.++|+|||++
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  160 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLS  160 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccce
Confidence             789999999999999985321      222      45667777788888888876     899999999999999999


Q ss_pred             eeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccc
Q 042690          145 KLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKT  206 (266)
Q Consensus       145 ~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~  206 (266)
                      +......... ......+..|+|||.+.+..++.++|+||||+++|||++ |..||...                .+...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  240 (273)
T cd05035         161 KKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNRLKQPEDC  240 (273)
T ss_pred             eeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcCC
Confidence            8654322211 112234668999999888889999999999999999999 77787552                12334


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ...+.+++.+||+.||.+||++.++++.|+.+
T Consensus       241 ~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         241 LDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            56788999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-33  Score=244.05  Aligned_cols=215  Identities=20%  Similarity=0.256  Sum_probs=175.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .+...+.||+|.||.||+|...   .+..-.||||..+               .+|+.++||||++++|+|... ..|+|
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~-P~Wiv  468 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-PMWIV  468 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc-ceeEE
Confidence            3456678999999999999963   3455668998876               289999999999999999754 48999


Q ss_pred             EEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||.+.-|.|..|+.....       ..+..++..++.++++.+.+|+     |||+....-+||+|||++++.....-..
T Consensus       469 mEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYk  548 (974)
T KOG4257|consen  469 MELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYK  548 (974)
T ss_pred             EecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchhh
Confidence            999999999999986543       2345666666766666665555     9999999999999999999986433334


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~c  217 (266)
                      .+.......|||||.+.-.+++.++|||-||+-+||++. |..||.+                ..++..++.+..++.+|
T Consensus       549 aS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGeRlP~P~nCPp~LYslmskc  628 (974)
T KOG4257|consen  549 ASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGERLPCPPNCPPALYSLMSKC  628 (974)
T ss_pred             ccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCCCCCCCCCCChHHHHHHHHH
Confidence            444455678999999988899999999999999999885 8889987                34677788999999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHh
Q 042690          218 VKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      |+++|.+||.+.+|...|..+.+
T Consensus       629 WayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  629 WAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             hccCcccCCcHHHHHHHHHHHHH
Confidence            99999999999988877766644

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-33  Score=228.99  Aligned_cols=213  Identities=22%  Similarity=0.317  Sum_probs=172.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ..+|.+.+.||+|++|.||+|...  +...+++|.+.             ..++.++|+||+++++++......+++|||
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~--~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWN--GTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY   82 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEc--CCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence            357899999999999999999974  55778888765             367889999999999999888889999999


Q ss_pred             CCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +++++|.+++....  .+      .+..++..++.++|..+++|.     ||+++.++.++|+|||++............
T Consensus        83 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~  162 (261)
T cd05034          83 MSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTARE  162 (261)
T ss_pred             cCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhh
Confidence            99999999997543  23      344556666678888887776     899999999999999999875432212222


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ....+..|+|||.+.+..++.++|+||+|++++++++ |+.||....                +......+.+++.+|++
T Consensus       163 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  242 (261)
T cd05034         163 GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWD  242 (261)
T ss_pred             ccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcc
Confidence            2334568999999988889999999999999999998 888886521                22334678899999999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~  237 (266)
                      .+|.+||+++++.+.|+.
T Consensus       243 ~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         243 KDPEERPTFEYLQSFLED  260 (261)
T ss_pred             cCcccCCCHHHHHHHHhc
Confidence            999999999999998874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=3.2e-33  Score=239.10  Aligned_cols=209  Identities=17%  Similarity=0.143  Sum_probs=167.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++.++ .++..+|+|.+.                 .+++.++|++|+++++++.++...++||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLK-NADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEEC-CCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            6889999999999999999986 667889998763                 2556778999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+|+|.+++... ..+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++...........
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~  160 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS  160 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCccee
Confidence            999999999999763 232      345567777888998888887     89999999999999999976543222233


Q ss_pred             ccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------C---ccccchH
Q 042690          156 TGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D---PKTLEKP  210 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~---~~~~~~~  210 (266)
                      ....||+.|+|||++.     ...++.++|+|||||++|+|++|+.||....                 +   ......+
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~  240 (332)
T cd05623         161 SVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDA  240 (332)
T ss_pred             cccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHH
Confidence            3456899999999875     3457889999999999999999999997521                 1   1235567


Q ss_pred             HHHHHHhhhcCCCC--CCCHHHHHHH
Q 042690          211 VMIAIQFVKEKPPL--RPSLRIVALM  234 (266)
Q Consensus       211 ~~l~~~cl~~~p~~--Rps~~~il~~  234 (266)
                      .+++.+|+..++.+  |++++++++.
T Consensus       241 ~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         241 KDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             HHHHHHHccChhhhcCCCCHHHHhCC
Confidence            78999988654444  6888888755

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-33  Score=238.47  Aligned_cols=210  Identities=17%  Similarity=0.126  Sum_probs=165.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||++... .++..||+|.+.                 .+++.++|+||+++++++.+++..++|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv   79 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMK-NTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLV   79 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEEC-CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEE
Confidence            36889999999999999999976 678889999753                 255677899999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+++++|.+++... ..+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++..........
T Consensus        80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  159 (331)
T cd05597          80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQ  159 (331)
T ss_pred             EecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcc
Confidence            9999999999999753 233      344566677788888888887     8999999999999999987654322222


Q ss_pred             cccccCCCCcCCccccCC-----CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------ccccch
Q 042690          155 LTGMRETKGYLPPEWFRN-----MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------PKTLEK  209 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~~~~~~  209 (266)
                      .....||+.|+|||++.+     ..++.++|+|||||++|+|++|+.||.....                    +.....
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  239 (331)
T cd05597         160 SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEE  239 (331)
T ss_pred             ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHH
Confidence            233468999999998863     3467899999999999999999999865211                    123556


Q ss_pred             HHHHHHHhhhcCC--CCCCCHHHHHHH
Q 042690          210 PVMIAIQFVKEKP--PLRPSLRIVALM  234 (266)
Q Consensus       210 ~~~l~~~cl~~~p--~~Rps~~~il~~  234 (266)
                      +.+++.+|+..++  ..||+++++++.
T Consensus       240 ~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         240 AKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             HHHHHHHHccCcccccCCCCHHHHhcC
Confidence            7788888775533  337888888755

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=5.7e-33  Score=232.66  Aligned_cols=205  Identities=18%  Similarity=0.204  Sum_probs=161.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHh---hhcCCCceeeeeeEEEe-----C
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVV---HVAHHKNLVCLLGYHIE-----Q   80 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l---~~~~h~~iv~~~~~~~~-----~   80 (266)
                      +|.+.+.||+|+||.||+|.++ .+++.+|+|.+.                .++   +.++||||+++++++..     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~   79 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDP-HSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRE   79 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEEC-CCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCC
Confidence            4788999999999999999976 678889999654                123   34479999999998864     2


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      ...+++|||+.+ +|.+++.....  +      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...
T Consensus        80 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~  158 (288)
T cd07863          80 TKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIY  158 (288)
T ss_pred             ceEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccc
Confidence            357899999975 89888865322  2      344566677788888888887     899999999999999999865


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------------
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------  203 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------  203 (266)
                      ...  .......++..|+|||.+.+..++.++||||+||++|+|++|.+||.....                        
T Consensus       159 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07863         159 SCQ--MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVT  236 (288)
T ss_pred             cCc--ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCccccc
Confidence            321  222335678899999999888899999999999999999999988754211                        


Q ss_pred             ------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        +.....+.+++.+||+.||.+||++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         237 LPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             ccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                              122344578999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=7.4e-33  Score=229.65  Aligned_cols=215  Identities=19%  Similarity=0.251  Sum_probs=169.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .+|.+.+.||+|+||.||+|.+...  ....+++|.+.               .+++.++||||+++++++..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            4788899999999999999987422  23468888653               367788999999999999988899999


Q ss_pred             EEcCCCCCHHHHHhhcC-CCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECL-RPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~-~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+++++|.+++.... .+++      ..++..++..+|..+++|+     |++++.++.++|+|||++..........
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~  163 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAA  163 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccccccee
Confidence            99999999999997543 3333      3445556677787777776     8999999999999999998754322211


Q ss_pred             c--ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHH
Q 042690          155 L--TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       155 ~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~  215 (266)
                      .  ....++..|++||.+.+..++.++|+||||+++|++++ |..||....                +...+..+.+++.
T Consensus       164 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  243 (267)
T cd05066         164 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGYRLPAPMDCPAALHQLML  243 (267)
T ss_pred             eecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHH
Confidence            1  12233568999999988889999999999999999886 998886421                1223457789999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      +|++.+|.+||++.++++.|++.
T Consensus       244 ~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         244 DCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             HHcccCchhCCCHHHHHHHHHhh
Confidence            99999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.5e-33  Score=227.67  Aligned_cols=209  Identities=20%  Similarity=0.201  Sum_probs=164.8

Q ss_pred             eccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||+|.+...  ....+++|.+.               .+++.++|||++++++++. ....++||||+.+
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            4799999999999987422  33678888754               3777889999999999876 4457899999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc--ccccc
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT--LTGMR  159 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~  159 (266)
                      ++|.+++.....++      +..++..++.++|..+++|+     |++++.++.++|+|||+++.........  .....
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~  159 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGR  159 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCcc
Confidence            99999998655443      44556666677777777776     8999999999999999998764322211  11122


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhcCC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~~p  222 (266)
                      ++..|+|||.+.+..++.++|+||||+++|++++ |..||...                .+......+.+++.+||+.+|
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p  239 (257)
T cd05060         160 WPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRP  239 (257)
T ss_pred             ccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCCh
Confidence            3467999999988889999999999999999998 88888652                123344677899999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 042690          223 PLRPSLRIVALMLQSIL  239 (266)
Q Consensus       223 ~~Rps~~~il~~l~~~~  239 (266)
                      .+||++.++++.|+...
T Consensus       240 ~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         240 EDRPTFSELESTFRRDP  256 (257)
T ss_pred             hhCcCHHHHHHHHHhcc
Confidence            99999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7e-33  Score=228.26  Aligned_cols=208  Identities=22%  Similarity=0.235  Sum_probs=171.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ..+|++.+.||.|++|.||+|..   .++.+++|...             .+++.++|+||+++++++......++||||
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~---~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDY---RGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEe---cCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            45788899999999999999996   46788998776             377788999999999999988889999999


Q ss_pred             CCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +.+++|.+++....  .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||.+........    
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~----  157 (256)
T cd05039          82 MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD----  157 (256)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc----
Confidence            99999999997654  23      344566666788888888877     89999999999999999987532111    


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ....+..|+|||.+.+..++.++|+||||+++|++++ |..||....                +...+..+.+++.+||.
T Consensus       158 ~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  237 (256)
T cd05039         158 SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWE  237 (256)
T ss_pred             cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhc
Confidence            2234567999999888888999999999999999997 888875421                22345678899999999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~  237 (266)
                      .+|.+||+++++++.|+.
T Consensus       238 ~~p~~Rp~~~~l~~~l~~  255 (256)
T cd05039         238 LDPAKRPTFKQLREQLAL  255 (256)
T ss_pred             cChhhCcCHHHHHHHHhc
Confidence            999999999999999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=8.3e-33  Score=231.22  Aligned_cols=206  Identities=19%  Similarity=0.280  Sum_probs=165.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||+|... .++..+++|.+.                .+++.++|||++++++++.++...++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNK-KTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFE   79 (285)
T ss_pred             CceEeeEecccCceEEEEEEEC-CCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEe
Confidence            4788899999999999999975 567889999754                26778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC---CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECL---RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~---~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+. ++|.+++....   .++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ...
T Consensus        80 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~-~~~  157 (285)
T cd07861          80 FLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIP-VRV  157 (285)
T ss_pred             cCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCC-ccc
Confidence            997 58988886432   222      45667777788888888887     899999999999999999765322 122


Q ss_pred             cccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC------------------------------
Q 042690          155 LTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------------  203 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------------  203 (266)
                      .....++..|+|||.+.+. .++.++|+||||+++|+|+||+.||.....                              
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (285)
T cd07861         158 YTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKN  237 (285)
T ss_pred             ccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHh
Confidence            2334568899999987653 478899999999999999999998864211                              


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    ......+.+++.+||+.||.+||++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         238 TFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             hccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence                          112345668999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.1e-32  Score=228.90  Aligned_cols=218  Identities=19%  Similarity=0.206  Sum_probs=171.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|.+.+.||+|++|.||+|.+..  +....+++|...               .+++.++||||+++++++.+ ...++
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~l   83 (270)
T cd05056           5 REDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWI   83 (270)
T ss_pred             hhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEE
Confidence            3468889999999999999998742  234568888654               26778899999999998875 45779


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+++++|.+++.... .+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++.........
T Consensus        84 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~  163 (270)
T cd05056          84 VMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYY  163 (270)
T ss_pred             EEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccce
Confidence            999999999999997543 233      33456666678888887776     899999999999999999875433222


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~  216 (266)
                      ......++..|+|||.+.+..++.++|+||||++++++++ |..||....                ++..+..+.+++.+
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  243 (270)
T cd05056         164 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTK  243 (270)
T ss_pred             ecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHH
Confidence            2222234567999999888888999999999999999986 998986521                23345678899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      |+..+|.+||++.++++.|+.+...
T Consensus       244 ~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         244 CWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             HcCCChhhCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999988654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.1e-32  Score=238.00  Aligned_cols=206  Identities=16%  Similarity=0.209  Sum_probs=164.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCH
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSI   95 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L   95 (266)
                      ..|.+.+.||+|+||.||+|.+. .++..||+|...        .+++.++||||+++++++......++|||++. ++|
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l  143 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKP-GQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDL  143 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEEC-CCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcH
Confidence            46999999999999999999976 667889999633        48889999999999999999999999999996 488


Q ss_pred             HHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           96 SSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        96 ~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      .+++... ..+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++.....  ........||..
T Consensus       144 ~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~--~~~~~~~~gt~~  221 (357)
T PHA03209        144 YTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVV--APAFLGLAGTVE  221 (357)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccccccc--Cccccccccccc
Confidence            8888653 233      344666777789998888888     89999999999999999975321  112234568999


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------------c---------------
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------P---------------  204 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------~---------------  204 (266)
                      |+|||++.+..++.++|||||||++|+|+++..++....+                        +               
T Consensus       222 y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (357)
T PHA03209        222 TNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGF  301 (357)
T ss_pred             ccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHH
Confidence            9999999988899999999999999999986554422100                        0               


Q ss_pred             --------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 --------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 --------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                          .......+++.+||+.||.+|||+.|+++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~  350 (357)
T PHA03209        302 IEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILN  350 (357)
T ss_pred             HhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhc
Confidence                                01122334899999999999999999885

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=4.1e-33  Score=240.51  Aligned_cols=212  Identities=19%  Similarity=0.211  Sum_probs=168.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      ..+|.+.+.||+|+||.||++... ..+..+|+|++.                .+++.++||||+++++++...      
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          16 LKRYQNLKPIGSGAQGIVCAAYDA-VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhceeEEEEeeecCCEEEEEEEec-CCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            468999999999999999999875 567889999764                267788999999999998643      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ...++||||+.+ +|.+.+.....    ..+..++..++.++|..+++|+     ||+++.++.++|+|||+++....  
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~--  171 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--  171 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCC--
Confidence            347899999976 77777653211    2345667777888998888887     89999999999999999986432  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      ........++..|+|||++.+..++.++|+|||||++|+|++|+.||.....                            
T Consensus       172 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (355)
T cd07874         172 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN  251 (355)
T ss_pred             ccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHH
Confidence            2222345689999999999988899999999999999999999998864210                            


Q ss_pred             -----------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHH
Q 042690          204 -----------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSI  238 (266)
Q Consensus       204 -----------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~  238 (266)
                                                   ......+.+++.+||..||.+|||+.++++.  +..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         252 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             HHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence                                         0012345789999999999999999999974  5444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=9.6e-33  Score=228.10  Aligned_cols=211  Identities=23%  Similarity=0.286  Sum_probs=168.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ..|.+.+.||+|++|.||++.+.  ....+++|.+.             .+++.++|||++++++++. ....+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~--~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWN--GTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEc--CCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            46888999999999999999875  34468888654             3778889999999999875 45678999999


Q ss_pred             CCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           91 HNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        91 ~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      .+++|.+++.....  +      .+..++..++.++|..+++|+     |+++++++.++|+|||++.............
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~  162 (260)
T cd05069          83 GKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQG  162 (260)
T ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCC
Confidence            99999999975322  2      344566666788888887776     8999999999999999997654322222223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..++..|+|||...+..++.++|+||||+++|+|+| |..||....                +......+.+++.+||..
T Consensus       163 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  242 (260)
T cd05069         163 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKK  242 (260)
T ss_pred             CccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccC
Confidence            345678999999888889999999999999999999 888886521                122445678899999999


Q ss_pred             CCCCCCCHHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQS  237 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~  237 (266)
                      ||.+||+++++++.|+.
T Consensus       243 ~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         243 DPDERPTFEYIQSFLED  259 (260)
T ss_pred             CcccCcCHHHHHHHHhc
Confidence            99999999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=7.2e-33  Score=229.87  Aligned_cols=216  Identities=18%  Similarity=0.238  Sum_probs=169.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCC--cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGD--KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~--~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+.|.+.+.||+|+||.||+|.+....  +..|++|.+.               ..++.++||||+++++++..+...++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   82 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMI   82 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEE
Confidence            457889999999999999999975222  3468888754               36778899999999999998889999


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+.+++|.+++.... .+.      +..++..++..+|..+++|+     |++++.++.++|+|||++.........
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~  162 (269)
T cd05065          83 ITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD  162 (269)
T ss_pred             EEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccc
Confidence            999999999999997543 233      33455566677888888776     899999999999999998765322211


Q ss_pred             c-ccc---ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHH
Q 042690          154 T-LTG---MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVM  212 (266)
Q Consensus       154 ~-~~~---~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~  212 (266)
                      . ...   ...+..|+|||.+.+..++.++|+||+|+++||+++ |..||....                +...+..+.+
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  242 (269)
T cd05065         163 PTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDYRLPPPMDCPTALHQ  242 (269)
T ss_pred             cccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCcCCCcccCCHHHHH
Confidence            1 111   112457999999988889999999999999999886 888885421                2233456788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ++.+||+.+|.+||++++++..|+.+
T Consensus       243 li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         243 LMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             HHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            99999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.1e-32  Score=234.11  Aligned_cols=219  Identities=17%  Similarity=0.243  Sum_probs=172.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEc------CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA------PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      ++|.+.+.||+|+||.||++.+.      ......+++|.+.               .+++.+ +||||+++++++...+
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEG   91 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCC
Confidence            57889999999999999999752      1234567887654               255566 5999999999999888


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC----------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC
Q 042690           82 CRLLVYKFMHNRSISSLLYECL----------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF  134 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~----------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~  134 (266)
                      ..+++|||+.+++|.+++....                .+.      +..++..++.++|.++++|+     |++++.++
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~  171 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDN  171 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCC
Confidence            8999999999999999997532                122      34567777788888888887     89999999


Q ss_pred             EEEEeecCcceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------
Q 042690          135 TVETSDLGLAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------  202 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------  202 (266)
                      .++|+|||+++......... .....++..|+|||.+.+..++.++|+||||+++|+|++ |..||....          
T Consensus       172 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~  251 (314)
T cd05099         172 VMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLRE  251 (314)
T ss_pred             cEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence            99999999998653211111 112233467999999888889999999999999999999 777775411          


Q ss_pred             ------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          203 ------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       203 ------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                            +......+.+++.+||..+|.+||++.++++.|+.+....
T Consensus       252 ~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~  297 (314)
T cd05099         252 GHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAV  297 (314)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHh
Confidence                  2223456789999999999999999999999999987644

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-32  Score=229.60  Aligned_cols=219  Identities=21%  Similarity=0.290  Sum_probs=173.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|++.+.||+|+||.||+|.++...   ...+++|...               ..++.++||||+++++++.. ...++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            57889999999999999999975222   2357887654               37778899999999999887 67889


Q ss_pred             EEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+.+++|.+++.... .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||.++........
T Consensus        86 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~  165 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKE  165 (279)
T ss_pred             EEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccc
Confidence            999999999999997643 2      3455666677788888888887     899999999999999999875422211


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~  215 (266)
                       ......++..|+|||.+.+..++.++|+||||+++|++++ |+.||....                +......+.+++.
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (279)
T cd05057         166 YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGERLPQPPICTIDVYMVLV  245 (279)
T ss_pred             eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHH
Confidence             1112223567999999888888999999999999999998 898886522                2223456778999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +||..+|..||++.++++.|+.+...+.
T Consensus       246 ~~l~~~p~~Rp~~~~l~~~l~~~~~~~~  273 (279)
T cd05057         246 KCWMIDAESRPTFKELINEFSKMARDPQ  273 (279)
T ss_pred             HHcCCChhhCCCHHHHHHHHHHHHhCCc
Confidence            9999999999999999999999877553

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=6.5e-33  Score=228.53  Aligned_cols=209  Identities=22%  Similarity=0.249  Sum_probs=168.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEE-eCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHI-EQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~-~~~~~~lv~e   88 (266)
                      +..+|.+.+.||+|++|.||++..   .+..+++|...            .+++.++|+|++++++++. .++..+++||
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~---~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (256)
T cd05082           4 NMKELKLLQTIGKGEFGDVMLGDY---RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   80 (256)
T ss_pred             cHHhCeeeeeecccCCCeEEEEEE---cCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEE
Confidence            456889999999999999999986   46678888664            3778889999999999865 4456899999


Q ss_pred             cCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++++|.+++.....        ..+..++..++.++|..+++|+     ||+++.++.++|+|||++.......    
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~----  156 (256)
T cd05082          81 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ----  156 (256)
T ss_pred             CCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC----
Confidence            9999999999976433        2344556677788888888887     8999999999999999987643211    


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl  218 (266)
                      .....+..|+|||.+.+..++.++|+|||||++|+|++ |+.||....                +......+.+++.+|+
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  236 (256)
T cd05082         157 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCW  236 (256)
T ss_pred             CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHh
Confidence            12234568999999888888999999999999999998 888875421                1233456789999999


Q ss_pred             hcCCCCCCCHHHHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~  237 (266)
                      +.+|.+||++.++++.|+.
T Consensus       237 ~~~p~~Rpt~~~l~~~l~~  255 (256)
T cd05082         237 HLDAATRPSFLQLREQLEH  255 (256)
T ss_pred             cCChhhCcCHHHHHHHHhc
Confidence            9999999999999998875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.4e-33  Score=237.78  Aligned_cols=197  Identities=17%  Similarity=0.184  Sum_probs=159.9

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||++... .++..+|+|.+..                 ++..+ +||||+++++++...+..++||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (327)
T cd05617           1 RVIGRGSYAKVLLVRLK-KNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVN   79 (327)
T ss_pred             CeeeeCCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCC
Confidence            46899999999999976 5678899987752                 33444 69999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... .........|
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~-~~~~~~~~~g  158 (327)
T cd05617          80 GGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLG-PGDTTSTFCG  158 (327)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccC-CCCceecccC
Confidence            999999887655544      44556677788888888887     89999999999999999875321 1122234568


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC----------------------CCCccccchHHHHHHHhh
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ----------------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~----------------------~~~~~~~~~~~~l~~~cl  218 (266)
                      |+.|+|||.+.+..++.++|+||||+++|+|++|..||..                      ..+......+.+++.+||
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L  238 (327)
T cd05617         159 TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFL  238 (327)
T ss_pred             CcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHh
Confidence            9999999999988899999999999999999999999952                      112233456778999999


Q ss_pred             hcCCCCCCCH
Q 042690          219 KEKPPLRPSL  228 (266)
Q Consensus       219 ~~~p~~Rps~  228 (266)
                      +.||.+|+++
T Consensus       239 ~~dP~~R~~~  248 (327)
T cd05617         239 NKDPKERLGC  248 (327)
T ss_pred             ccCHHHcCCC
Confidence            9999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.8e-33  Score=217.22  Aligned_cols=210  Identities=19%  Similarity=0.207  Sum_probs=183.0

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCe
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      ....++|.+.+.||.|.||.||.|+.+ ..+..+|+|++.+                 +-..++||||+++|+++.+...
T Consensus        18 ~~~l~dfeigr~LgkgkFG~vYlarek-ks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~r   96 (281)
T KOG0580|consen   18 TWTLDDFEIGRPLGKGKFGNVYLAREK-KSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKR   96 (281)
T ss_pred             ccchhhccccccccCCccccEeEeeec-cCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccce
Confidence            355779999999999999999999976 6788899998873                 5557899999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhc--CC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           83 RLLVYKFMHNRSISSLLYEC--LR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~--~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      .||++||...|.+...+.+.  .+      ..+..+++-++.++|..+++|+     |+|++..|..|++|||.+.... 
T Consensus        97 iyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p-  175 (281)
T KOG0580|consen   97 IYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP-  175 (281)
T ss_pred             eEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecC-
Confidence            99999999999999999832  22      4577889999999998888888     8999999999999999997632 


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~  214 (266)
                        .......+||..|.+||...+...+...|+|++|++.||++.|.+||..               ..+........++|
T Consensus       176 --~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI  253 (281)
T KOG0580|consen  176 --SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLI  253 (281)
T ss_pred             --CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHH
Confidence              3444567899999999999999999999999999999999999999987               23556667778899


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+|+..+|.+|....|+++
T Consensus       254 ~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  254 SRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             HHHhccCccccccHHHHhh
Confidence            9999999999999988865

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=3.9e-33  Score=238.45  Aligned_cols=208  Identities=15%  Similarity=0.127  Sum_probs=165.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++.+. .++..+|+|.+.                 .+++.++|+||+++++++.+++..|+||
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMK-HTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            6889999999999999999976 677889999753                 2556778999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+|+|.+++... ..+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++...........
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  160 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQS  160 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceee
Confidence            999999999999763 3333      44566677788888888887     89999999999999999987643322222


Q ss_pred             ccccCCCCcCCccccCC-----CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------C---ccccchH
Q 042690          156 TGMRETKGYLPPEWFRN-----MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D---PKTLEKP  210 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~---~~~~~~~  210 (266)
                      ....|++.|+|||++.+     ..++.++|+||||+++|+|++|+.||....                 +   ......+
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~  240 (331)
T cd05624         161 SVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEA  240 (331)
T ss_pred             ccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHH
Confidence            33568999999998765     457889999999999999999999996521                 1   1234667


Q ss_pred             HHHHHHhhhcCCCC--CCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPL--RPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~--Rps~~~il~  233 (266)
                      .+++.+|+..++.+  |++++++++
T Consensus       241 ~~li~~ll~~~~~~~~~~~~~~~~~  265 (331)
T cd05624         241 KDLIQRLICSRERRLGQNGIEDFKK  265 (331)
T ss_pred             HHHHHHHccCchhhcCCCCHHHHhc
Confidence            78999998865544  457777764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=9.2e-33  Score=232.02  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=167.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+.|++++.||.|++|.||+|.+. .++..+++|.+.              ..++.++|||++++++.+..++..++||
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNK-ETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEEC-CCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEE
Confidence            3467899999999999999999975 567888888764              2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+++|..++.+.. .      ..+..++..++.++|.++++|+     ||+++.++.++|+|||++...... ....
T Consensus        89 e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~-~~~~  167 (292)
T cd06644          89 EFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKT-LQRR  167 (292)
T ss_pred             ecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceecccc-cccc
Confidence            9999999998876432 2      2344556666678888887776     899999999999999998754321 1122


Q ss_pred             ccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHH
Q 042690          156 TGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~  212 (266)
                      ....++..|+|||.+.     ...++.++|+||||+++|+|++|..||....                  +......+.+
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (292)
T cd06644         168 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRD  247 (292)
T ss_pred             ceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHH
Confidence            3345788999999874     3446789999999999999999999985421                  1223356788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+||+.+|++||+++++++
T Consensus       248 li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         248 FLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             HHHHHhcCCcccCcCHHHHhc
Confidence            999999999999999999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1e-32  Score=233.56  Aligned_cols=206  Identities=17%  Similarity=0.183  Sum_probs=166.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|.+.+.||+|+||.||++.+. .++..+++|.+.               ++++.++||||+++++++..++..++||||
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHR-PSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEc-CCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            6889999999999999999976 567778887653               367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++++|.+++.....+.      +..++..++.++|. ++++|+     ||+++.++.++|+|||++.....   .....
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~---~~~~~  157 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMANS  157 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccc---ccccc
Confidence            99999999998655433      44455566677775 466666     89999999999999999875432   12233


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------------
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------------  203 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++|..||.....                                  
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (308)
T cd06615         158 FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPM  237 (308)
T ss_pred             CCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchh
Confidence            5678899999998888889999999999999999999998753110                                  


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                         ......+.+++.+||..+|++||++.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  287 (308)
T cd06615         238 AIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKH  287 (308)
T ss_pred             hHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                               0123357799999999999999999999865

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=7.9e-33  Score=231.02  Aligned_cols=206  Identities=17%  Similarity=0.189  Sum_probs=168.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++.+.||+|++|.||+|.+. .++..+++|.+.               ++++.++||||+++++.+..++..++||||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHL-LTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEc-CCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            5778899999999999999975 577889998753               256678999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc--CCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCC
Q 042690           90 MHNRSISSLLYEC--LRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK  162 (266)
Q Consensus        90 ~~~~~L~~~l~~~--~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~  162 (266)
                      +++++|..+..-.  ....+..++..++.++|..+++|.     |++++.++.++|+|||++.....   .......++.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~---~~~~~~~~~~  157 (279)
T cd06619          81 MDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN---SIAKTYVGTN  157 (279)
T ss_pred             CCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccc---ccccCCCCCh
Confidence            9999997654311  113455667777788888888887     89999999999999999976532   1223356789


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------------CccccchHHHHHHHhh
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------------~~~~~~~~~~l~~~cl  218 (266)
                      .|+|||.+.+..++.++|+||||+++|+|++|+.||....                        .......+.+++.+|+
T Consensus       158 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  237 (279)
T cd06619         158 AYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCM  237 (279)
T ss_pred             hhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHh
Confidence            9999999988889999999999999999999999985311                        1123456789999999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALM  234 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~  234 (266)
                      ..+|.+||+++++++.
T Consensus       238 ~~~P~~Rp~~~eil~~  253 (279)
T cd06619         238 RKQPKERPAPENLMDH  253 (279)
T ss_pred             hCChhhCCCHHHHhcC
Confidence            9999999999998864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3e-33  Score=230.59  Aligned_cols=206  Identities=20%  Similarity=0.294  Sum_probs=170.6

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |++.+.||+|+||+||++... .++..+|+|.+.                ..++.++||||+++++++......+++|||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~-~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNK-KNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEET-TTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEEC-CCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccc
Confidence            678899999999999999986 677789998776                267788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      +.+++|.+++.....+.      +..++..++..+|..++.|.     ||+++.++.++|+|||.+.... .........
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~-~~~~~~~~~  158 (260)
T PF00069_consen   80 CPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLS-ENNENFNPF  158 (260)
T ss_dssp             ETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEEST-STTSEBSSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999998555543      44556666677777777776     8999999999999999997641 223344456


Q ss_pred             cCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------------CccccchHHHHHH
Q 042690          159 RETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       159 ~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------~~~~~~~~~~l~~  215 (266)
                      .++..|+|||.+. +...+.++|+||+|+++++|++|..|+....                      .......+.+++.
T Consensus       159 ~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  238 (260)
T PF00069_consen  159 VGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIK  238 (260)
T ss_dssp             SSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHH
Confidence            6789999999988 7788999999999999999999999987631                      0011267888999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+||++.++++
T Consensus       239 ~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  239 KMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             HHSSSSGGGSTTHHHHHT
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=7.7e-33  Score=229.39  Aligned_cols=209  Identities=13%  Similarity=0.138  Sum_probs=168.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++..+++|.+.              .+++.++||||+++++.+...+..+++||
T Consensus         8 ~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e   86 (267)
T cd06645           8 QEDFELIQRIGSGTYGDVYKARNV-NTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICME   86 (267)
T ss_pred             HHHHHHHHHhCCCCCeEEEEEEEc-CCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEe
Confidence            347888899999999999999975 677889998643              36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+++++|.+++...+.++..      .++..++.++|..+++|+     ||+++.++.++|+|||++..... .......
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~-~~~~~~~  165 (267)
T cd06645          87 FCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITA-TIAKRKS  165 (267)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccC-ccccccc
Confidence            99999999999766554433      445566688888888777     89999999999999999876532 1222234


Q ss_pred             ccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------ccccchHHHHH
Q 042690          158 MRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------PKTLEKPVMIA  214 (266)
Q Consensus       158 ~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~~~~~~~~~l~  214 (266)
                      ..++..|+|||.+.   ...++.++|+||||+++|+|++|..|+....+                    ......+.+++
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  245 (267)
T cd06645         166 FIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFV  245 (267)
T ss_pred             ccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHH
Confidence            56889999999874   44578899999999999999999998753111                    11234577899


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+|++.+|.+||+++++++
T Consensus       246 ~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         246 KMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             HHHccCCchhCcCHHHHhc
Confidence            9999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1e-32  Score=230.09  Aligned_cols=213  Identities=23%  Similarity=0.256  Sum_probs=167.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC----CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG----DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~----~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+|.+.+.||+|++|.||+|.+...    ....+++|...               .+++.++|+||+++++++.+....+
T Consensus         6 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRF   85 (277)
T ss_pred             HHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcE
Confidence            4688999999999999999998521    56778888654               2677889999999999998888899


Q ss_pred             EEEEcCCCCCHHHHHhhcC-------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecCc
Q 042690           85 LVYKFMHNRSISSLLYECL-------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLGL  143 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg~  143 (266)
                      +||||+.+++|.+++....       .++      +..++..++.++|..+++|+     ||+++.++   .++|+|||+
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~  165 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGM  165 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCcc
Confidence            9999999999999997543       233      44455566677888887776     89998764   589999999


Q ss_pred             ceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Ccc
Q 042690          144 AKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPK  205 (266)
Q Consensus       144 a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~  205 (266)
                      ++......... ......+..|+|||.+.+..++.++|||||||++|+|++ |..||....                +..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  245 (277)
T cd05036         166 ARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKG  245 (277)
T ss_pred             ccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcCCCCCC
Confidence            98653211111 112233567999999988889999999999999999997 888886522                233


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ....+.+++.+|++.+|++||++.++++.|+
T Consensus       246 ~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         246 CPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             CCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            4457789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=8.6e-33  Score=231.57  Aligned_cols=205  Identities=22%  Similarity=0.251  Sum_probs=168.1

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      |+..+.||+|+||.||++.+. .+++.+|+|.+.                 .+++.++|++++++++.+.+.+..++|||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVR-ATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEc-CCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEE
Confidence            667789999999999999986 678889998653                 36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++.....  +      .+..++..++.++|..+++|+     ||+++.++.++|+|||++......  ...
T Consensus        81 ~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~--~~~  158 (285)
T cd05630          81 LMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG--QTI  158 (285)
T ss_pred             ecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCC--ccc
Confidence            9999999998864322  2      244566677788888888887     899999999999999998764321  122


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~  216 (266)
                      ....++..|+|||.+.+..++.++|+||+|+++|+|++|..||....                   +......+.+++.+
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  238 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQEEYSEKFSPDARSLCKM  238 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhhhhcCccCCHHHHHHHHH
Confidence            33568999999999988889999999999999999999999997521                   12244567889999


Q ss_pred             hhhcCCCCCCC-----HHHHHH
Q 042690          217 FVKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps-----~~~il~  233 (266)
                      ||+.||.+||+     ++++++
T Consensus       239 ~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         239 LLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             HhhcCHHHccCCCCCchHHHHc
Confidence            99999999999     778875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=8.5e-33  Score=235.64  Aligned_cols=201  Identities=17%  Similarity=0.208  Sum_probs=163.3

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcC-CCceeeeeeEEEeCCeEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAH-HKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~-h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      |...+.||+|+||.||+|... .++..||+|.+..                 +++.+. |++|+++++++...+..++||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERK-GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            567889999999999999975 6788999997642                 333444 578889999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++..... ......
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~-~~~~~~  159 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV-DGVTTR  159 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCC-CCcccc
Confidence            9999999999998765544      44556666788888888887     89999999999999999875421 112223


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcC
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ...||+.|+|||++.+..++.++|+||+|+++|+|++|+.||....               +......+.+++.+||+.+
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~  239 (323)
T cd05615         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKH  239 (323)
T ss_pred             CccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccC
Confidence            3558999999999988889999999999999999999999997632               2334566788999999999


Q ss_pred             CCCCCCH
Q 042690          222 PPLRPSL  228 (266)
Q Consensus       222 p~~Rps~  228 (266)
                      |.+|++.
T Consensus       240 p~~R~~~  246 (323)
T cd05615         240 PSKRLGC  246 (323)
T ss_pred             HhhCCCC
Confidence            9999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=9.4e-33  Score=232.67  Aligned_cols=210  Identities=16%  Similarity=0.174  Sum_probs=171.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...|.+.+.||+|++|.||++... .++..+++|.+.              .+++.++|||++++++++..+...++|||
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   96 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDI-ATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   96 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEEC-CCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeec
Confidence            468999999999999999999975 578889998764              36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           89 FMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      |+++++|.+++.....     ..+..++..++..+|..++.|+     ||+++.++.++|+|||++....... ......
T Consensus        97 ~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~  175 (297)
T cd06656          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTM  175 (297)
T ss_pred             ccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCc-cCcCcc
Confidence            9999999999865321     2344456666678887787777     8999999999999999987653222 122234


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      .+++.|+|||.+.+..++.++|+||||+++|+|++|..||....                  +......+.+++.+||..
T Consensus       176 ~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  255 (297)
T cd06656         176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEM  255 (297)
T ss_pred             cCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccC
Confidence            57889999999988888999999999999999999999986521                  112234567899999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      +|.+||+++++++.
T Consensus       256 ~p~~Rps~~~il~~  269 (297)
T cd06656         256 DVDRRGSAKELLQH  269 (297)
T ss_pred             ChhhCcCHHHHhcC
Confidence            99999999999873

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.5e-32  Score=232.06  Aligned_cols=215  Identities=20%  Similarity=0.221  Sum_probs=170.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      .+|.+.+.||+|+||.||++.+.    ...+..+|+|.+.               .+++.+ +||||+++++++...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            47889999999999999999752    2345578888553               366677 799999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           84 LLVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      +++|||+.+++|.+++.....  +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++......
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~  194 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND  194 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCC
Confidence            999999999999999975332  33      33455556677787777776     899999999999999999865432


Q ss_pred             ccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHH
Q 042690          151 QTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPV  211 (266)
Q Consensus       151 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~  211 (266)
                      ... ......++..|+|||.+.+..++.++||||+|+++|+|++ |..||....                 +......+.
T Consensus       195 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (302)
T cd05055         195 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIY  274 (302)
T ss_pred             CceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcCCcCCCCCCCCHHHH
Confidence            211 1122345678999999988889999999999999999998 888875411                 122346778


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      +++.+|++.+|.+||++.++++.|++.
T Consensus       275 ~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         275 DIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=3e-33  Score=241.82  Aligned_cols=207  Identities=18%  Similarity=0.156  Sum_probs=165.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++... .++..+|+|.+.                 .++..++||||+++++.+.+.+..++||
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKK-DTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            6788999999999999999976 678889999763                 2567789999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc----
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT----  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~----  152 (266)
                      ||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.++|+|||++........    
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~  160 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFY  160 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccc
Confidence            9999999999998665543      44566677788998888887     89999999999999999875421100    


Q ss_pred             ------------------------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC
Q 042690          153 ------------------------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS  202 (266)
Q Consensus       153 ------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~  202 (266)
                                                    .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~  240 (360)
T cd05627         161 RNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET  240 (360)
T ss_pred             cccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC
Confidence                                          00113468999999999998889999999999999999999999996522


Q ss_pred             Cc-------------------cccchHHHHHHHhhhcCCCCCCC---HHHHHH
Q 042690          203 DP-------------------KTLEKPVMIAIQFVKEKPPLRPS---LRIVAL  233 (266)
Q Consensus       203 ~~-------------------~~~~~~~~l~~~cl~~~p~~Rps---~~~il~  233 (266)
                      +.                   .......+++.+++. ||.+|++   ++++++
T Consensus       241 ~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~  292 (360)
T cd05627         241 PQETYRKVMNWKETLVFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKS  292 (360)
T ss_pred             HHHHHHHHHcCCCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhc
Confidence            11                   123456678888664 8999985   555543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.3e-32  Score=225.84  Aligned_cols=212  Identities=22%  Similarity=0.313  Sum_probs=170.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.++||+|+||.||++.+.  .+..+++|.+.             .+++.++|+||+++++++.. ...+++|||
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~--~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYN--KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEec--CCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            357899999999999999999864  55568888653             37888999999999999877 678999999


Q ss_pred             CCCCCHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +.+++|.+++....  .      ..+..++..++.++|..+++|+     |++++.++.++|+|||.+............
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  161 (260)
T cd05073          82 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE  161 (260)
T ss_pred             CCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCccccc
Confidence            99999999997532  2      2344567777788888888877     899999999999999999765422222222


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ...++..|+|||.+.+..++.++|+||||+++++++| |..||....                .......+.+++.+|+.
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  241 (260)
T cd05073         162 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWK  241 (260)
T ss_pred             CCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcc
Confidence            3345677999999988888999999999999999999 888886521                22344578889999999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~  237 (266)
                      .+|.+||+++++++.|+.
T Consensus       242 ~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         242 NRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             cCcccCcCHHHHHHHHhc
Confidence            999999999999999874

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.1e-32  Score=236.90  Aligned_cols=218  Identities=21%  Similarity=0.240  Sum_probs=169.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC-Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ-EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~-~~   82 (266)
                      ++|.+.+.||+|+||.||+|.+.    ...++.||+|.+.               .++..+ +||||+++++++... ..
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   86 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCc
Confidence            47899999999999999999852    2356789999764               255566 589999999988654 45


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC----------------------------------------------------------
Q 042690           83 RLLVYKFMHNRSISSLLYECLR----------------------------------------------------------  104 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~----------------------------------------------------------  104 (266)
                      .+++|||+.+|+|.+++.....                                                          
T Consensus        87 ~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
T cd05103          87 LMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  166 (343)
T ss_pred             eEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhh
Confidence            7899999999999999874321                                                          


Q ss_pred             ---------C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccccccCCCC
Q 042690          105 ---------P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKG  163 (266)
Q Consensus       105 ---------~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~  163 (266)
                               +      .+..++..++.++|.++++|+     ||+++.++.++|+|||++......... ......++..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  246 (343)
T cd05103         167 EQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK  246 (343)
T ss_pred             hhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcc
Confidence                     1      133456667788888888887     899999999999999999765322221 1112334667


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHhhhcCCCCC
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      |+|||.+.+..++.++|+||||+++|+|++ |..||....                 +......+.+++..||+.+|.+|
T Consensus       247 y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~R  326 (343)
T cd05103         247 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQR  326 (343)
T ss_pred             eECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            999999888889999999999999999997 888875421                 11234567899999999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 042690          226 PSLRIVALMLQSILEV  241 (266)
Q Consensus       226 ps~~~il~~l~~~~~~  241 (266)
                      |++.++++.|+.+.+.
T Consensus       327 ps~~eil~~l~~~~~~  342 (343)
T cd05103         327 PTFSELVEHLGNLLQA  342 (343)
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999988653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-32  Score=229.82  Aligned_cols=214  Identities=17%  Similarity=0.241  Sum_probs=169.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC--CeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~--~~~~   84 (266)
                      .|++++.||+|+||.||++.+.   ..++..+++|.+.               .+++.++|||++++++++...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            5678899999999999999853   2467889999865               377889999999999998775  5688


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~  164 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKE  164 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCcc
Confidence            9999999999999996543 23      344556666788888888877     89999999999999999986543222


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------------
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------------  200 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------------  200 (266)
                      .  ......++..|+|||.+.+..++.++|+||||+++|+|+|+..|...                              
T Consensus       165 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (284)
T cd05079         165 YYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKR  244 (284)
T ss_pred             ceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCcc
Confidence            1  11234456789999998888889999999999999999997654321                              


Q ss_pred             -CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          201 -GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       201 -~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                       ..+......+.+++.+||+.+|.+||++.++++.|+.+
T Consensus       245 ~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         245 LPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence             11223456788999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.1e-32  Score=231.02  Aligned_cols=214  Identities=19%  Similarity=0.205  Sum_probs=170.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+|.+.+.||+|+||.||+|.+..    .++..+++|.+.               .+++.++||||+++++++......+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~   84 (288)
T cd05050           5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMC   84 (288)
T ss_pred             HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccE
Confidence            468889999999999999998641    356788898754               2667889999999999999888899


Q ss_pred             EEEEcCCCCCHHHHHhhcCC----------------------------CCHHHHHHHHHHHhhhcCcccc-----ceeec
Q 042690           85 LVYKFMHNRSISSLLYECLR----------------------------PTWQQRMQDCIRDCWRTRALAC-----RILLH  131 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~----------------------------~~~~~~l~~~~~~~~~~~~~h~-----nili~  131 (266)
                      ++|||+.+++|.+++.....                            ..+..++..++.++|..+++|+     |++++
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~  164 (288)
T cd05050          85 LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVG  164 (288)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEec
Confidence            99999999999999974321                            2345566666788888888777     89999


Q ss_pred             CCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-------
Q 042690          132 DYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-------  202 (266)
Q Consensus       132 ~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-------  202 (266)
                      .++.++|+|||++......... .......+..|+|||.+.+..++.++|+||||+++|+|++ |..||....       
T Consensus       165 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~  244 (288)
T cd05050         165 ENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYY  244 (288)
T ss_pred             CCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            9999999999998764322111 1122334667999999888889999999999999999998 777775411       


Q ss_pred             ---------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 042690          203 ---------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       203 ---------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~  237 (266)
                               +......+.+++.+||+.+|.+||++.|+++.|+.
T Consensus       245 ~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         245 VRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence                     22345678899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=8e-33  Score=239.53  Aligned_cols=212  Identities=19%  Similarity=0.196  Sum_probs=168.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      ..+|.+.+.||+|+||.||++... ..+..+|+|++.                .+++.++||||+++++++...      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDA-ILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEEC-CCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            568999999999999999999975 567889999764                267788999999999987543      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ...++||||+.+ +|.+++.....    ..+..++..++.++|.++++|+     ||+++.++.++|+|||+++....  
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~--  178 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--  178 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCC--
Confidence            357999999976 78877753211    2355667777888998888887     89999999999999999986532  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      ........++..|+|||++.+..++.++|||||||++|+|++|+.||.....                            
T Consensus       179 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (364)
T cd07875         179 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRT  258 (364)
T ss_pred             CCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHH
Confidence            2222345689999999999988899999999999999999999999864110                            


Q ss_pred             -----------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHH
Q 042690          204 -----------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSI  238 (266)
Q Consensus       204 -----------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~  238 (266)
                                                   ......+.+++.+|++.||.+|||+.++++.  +..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~~  324 (364)
T cd07875         259 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  324 (364)
T ss_pred             HHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCcccccc
Confidence                                         0011346789999999999999999999874  4444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-34  Score=249.84  Aligned_cols=216  Identities=17%  Similarity=0.175  Sum_probs=176.0

Q ss_pred             hhhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           16 ENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        16 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      ..+-+..-..+.++..||.|+||+||+|..+ .++...|-|.+.              +++..++||+||++++.|..++
T Consensus        24 v~rdlnP~d~WeIiGELGDGAFGKVyKA~nk-et~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~en  102 (1187)
T KOG0579|consen   24 VYRDLNPRDHWEIIGELGDGAFGKVYKAVNK-ETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFEN  102 (1187)
T ss_pred             HhccCCHHHHHHHHhhhcCccchhhhhhhcc-cchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC
Confidence            3333344557889999999999999999986 555555666554              4899999999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC-------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT-------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~-------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      .+|++.|||.||-...++.+-++..       ...++..++..+|+.+++|+     |||++-+|.++|+|||.+-....
T Consensus       103 kLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~  182 (1187)
T KOG0579|consen  103 KLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKS  182 (1187)
T ss_pred             ceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchh
Confidence            9999999999999999887665522       33556677788999999988     99999999999999999865321


Q ss_pred             ccccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccC------------------CCCccc
Q 042690          150 NQTQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKT  206 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~  206 (266)
                       .-......+||+.|||||+..     ..+|++++||||||+++.+|..+.+|...                  ..+..+
T Consensus       183 -t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~W  261 (1187)
T KOG0579|consen  183 -TRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHW  261 (1187)
T ss_pred             -HHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchh
Confidence             122334588999999999764     56899999999999999999999998876                  234567


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ...+.+++.+||.-||..||++.++++
T Consensus       262 s~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  262 SRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             hhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence            788899999999999999999887753

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.8e-32  Score=226.22  Aligned_cols=207  Identities=16%  Similarity=0.199  Sum_probs=162.1

Q ss_pred             ccCCCcceEEEEEEEcC-CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           31 KPCGGSFSTVYTGVLAP-GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      .||+|+||.||+|.+.. +.+..+|+|...               .+++.++||||+++++++.. ...++||||+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~-~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA-EALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC-CCeEEEEEeCCCCC
Confidence            48999999999998742 345568888664               36788999999999998754 46789999999999


Q ss_pred             HHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc--cccccC
Q 042690           95 ISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT--LTGMRE  160 (266)
Q Consensus        95 L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~  160 (266)
                      |.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++..........  .....+
T Consensus        81 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  160 (257)
T cd05115          81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKW  160 (257)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCC
Confidence            999997432 23      344556666688888887777     8999999999999999997653222211  112223


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhcCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKEKPP  223 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~p~  223 (266)
                      +..|+|||.+.+..++.++|+||||+++|++++ |..||....                ++.....+.+++.+||..+|.
T Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~  240 (257)
T cd05115         161 PLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWE  240 (257)
T ss_pred             CcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence            568999999888888999999999999999996 888986521                233456788999999999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 042690          224 LRPSLRIVALMLQSI  238 (266)
Q Consensus       224 ~Rps~~~il~~l~~~  238 (266)
                      +||++.+|.+.|+..
T Consensus       241 ~Rp~~~~i~~~l~~~  255 (257)
T cd05115         241 DRPNFAKVEERMRTY  255 (257)
T ss_pred             hCcCHHHHHHHHhhh
Confidence            999999999998753

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2e-32  Score=229.27  Aligned_cols=205  Identities=21%  Similarity=0.268  Sum_probs=167.4

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      |...+.||+|+||+||++.+. .+++.+|+|.+.                 .+++.++|+|++++++.+..++..+++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVR-ATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEC-CCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEE
Confidence            567789999999999999986 568889998653                 37778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++....  .+      .+..++..++.++|..+++|+     |++++.++.++|+|||++......  ...
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~--~~~  158 (285)
T cd05632          81 IMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEG--ESI  158 (285)
T ss_pred             eccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCC--Ccc
Confidence            999999998886432  23      344556677788888888887     899999999999999998764321  222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~  216 (266)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++|..||....                   .......+.+++..
T Consensus       159 ~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  238 (285)
T cd05632         159 RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKM  238 (285)
T ss_pred             cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHH
Confidence            34568999999999988889999999999999999999999996521                   12344567889999


Q ss_pred             hhhcCCCCCCC-----HHHHHH
Q 042690          217 FVKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps-----~~~il~  233 (266)
                      |++.||.+||+     +++++.
T Consensus       239 ~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         239 LLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             HccCCHhHcCCCcccChHHHHc
Confidence            99999999999     666664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-34  Score=250.84  Aligned_cols=214  Identities=20%  Similarity=0.243  Sum_probs=176.0

Q ss_pred             ccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHH
Q 042690           31 KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSIS   96 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   96 (266)
                      .||+|.||+||-|++. .+...+|||.+.+              +.+.++|.|||+++|.+..++.+-+.||.++||+|.
T Consensus       582 VLGKGTYG~VYA~RD~-~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDM-DTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EeecCceeEEEeeccc-cceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            6899999999999976 6777889998762              677899999999999999899888999999999999


Q ss_pred             HHHhhcCC-C--------CHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeeccccccccccccCC
Q 042690           97 SLLYECLR-P--------TWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        97 ~~l~~~~~-~--------~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      +.++.... +        .+.+++...++++|...++|+     |+||+. .|.+|++|||-++.+..- ........||
T Consensus       661 sLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgi-nP~TETFTGT  739 (1226)
T KOG4279|consen  661 SLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGI-NPCTETFTGT  739 (1226)
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccC-Cccccccccc
Confidence            99985432 2        356778888899998888888     888875 589999999999987532 2334557799


Q ss_pred             CCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHHHHHHHhhhcC
Q 042690          162 KGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       162 ~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~~l~~~cl~~~  221 (266)
                      ..|||||++..++  |..++|||||||++.||.||++||.+                  ..+.+..++...++.+|++++
T Consensus       740 LQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd  819 (1226)
T KOG4279|consen  740 LQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPD  819 (1226)
T ss_pred             hhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCC
Confidence            9999999987554  88999999999999999999999977                  234455567778999999999


Q ss_pred             CCCCCCHHHHHHH--HHHHHhCCCCCC
Q 042690          222 PPLRPSLRIVALM--LQSILEVPSPPC  246 (266)
Q Consensus       222 p~~Rps~~~il~~--l~~~~~~~~~~~  246 (266)
                      |..||++.+++..  |+.-.+.+.++.
T Consensus       820 ~~~R~sA~~LL~DpFlq~~~kk~r~~l  846 (1226)
T KOG4279|consen  820 PCDRPSAKDLLQDPFLQHNNKKPRPKL  846 (1226)
T ss_pred             cccCccHHHhccCcccccCCCCCCCCC
Confidence            9999999999854  544444444443

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-32  Score=231.27  Aligned_cols=213  Identities=16%  Similarity=0.193  Sum_probs=166.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC-------------CCcceeeeeeHH---------------HHhhhcCCCceeeeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP-------------GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLG   75 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~-------------~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~   75 (266)
                      .+|.+.+.||+|+||.||++....             +....+++|.+.               ++++.++|||++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            478899999999999999988631             122357888654               3678899999999999


Q ss_pred             EEEeCCeEEEEEEcCCCCCHHHHHhhcC------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           76 YHIEQECRLLVYKFMHNRSISSLLYECL------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        76 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      ++...+..++||||+.+++|.+++....            .+.      +..++..++.++|..+++|+     |++++.
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~  164 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN  164 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC
Confidence            9999999999999999999999986432            122      34556666688888888777     899999


Q ss_pred             CCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh--CCCcccCCC-------
Q 042690          133 YFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS--CRCVERQGS-------  202 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t--g~~p~~~~~-------  202 (266)
                      ++.++|+|||++......... ......++..|+|||.+.+..++.++|+||||+++++|++  +..||....       
T Consensus       165 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~  244 (295)
T cd05097         165 HYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIEN  244 (295)
T ss_pred             CCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHH
Confidence            999999999999764322211 1122344678999999888889999999999999999998  445664311       


Q ss_pred             ----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 ----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 ----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                                      ++.....+.+++.+||+.+|.+||++++|++.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         245 TGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence                            2223456889999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1.3e-32  Score=231.69  Aligned_cols=213  Identities=17%  Similarity=0.169  Sum_probs=166.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEc---------------CCCcceeeeeeHH---------------HHhhhcCCCceeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA---------------PGDKTNIGVKKLD---------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~---------------~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~   73 (266)
                      .+|++.+.||+|+||.||++.+.               ..+...+|+|.+.               .+++.++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            36889999999999999998642               1234457887664               36678899999999


Q ss_pred             eeEEEeCCeEEEEEEcCCCCCHHHHHhhcCC-----------------CCHHHHHHHHHHHhhhcCcccc-----ceeec
Q 042690           74 LGYHIEQECRLLVYKFMHNRSISSLLYECLR-----------------PTWQQRMQDCIRDCWRTRALAC-----RILLH  131 (266)
Q Consensus        74 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~h~-----nili~  131 (266)
                      ++++..++..+++|||+.+++|.+++.....                 ..+..++..++.++|..+++|+     ||+++
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~  164 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVG  164 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEc
Confidence            9999999999999999999999999975421                 2234556666788888888877     89999


Q ss_pred             CCCEEEEeecCcceeeccccccc-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh--CCCcccCCC------
Q 042690          132 DYFTVETSDLGLAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS--CRCVERQGS------  202 (266)
Q Consensus       132 ~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t--g~~p~~~~~------  202 (266)
                      .++.++|+|||++.......... ......+..|++||...+..++.++|+||||+++|+|++  |..||....      
T Consensus       165 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~  244 (296)
T cd05095         165 KNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIE  244 (296)
T ss_pred             CCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHH
Confidence            99999999999997653222111 112234578999998887789999999999999999998  556775311      


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                                       +......+.+++.+||+.||.+||++.+|++.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  295 (296)
T cd05095         245 NTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL  295 (296)
T ss_pred             HHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence                             1223456778999999999999999999999886

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2.6e-32  Score=229.85  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=168.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...|...+.||.|++|.||++... .+++.+++|.+.              ..++.++|||++++++.+......++|||
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDV-ATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEc-CCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            346999999999999999999965 577889998664              36678899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.+++|.+++... .+++.      .++..++..+|..++.|+     ||+++.++.++|+|||++........ ....
T Consensus        97 ~~~~~~L~~~~~~~-~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~  174 (296)
T cd06655          97 YLAGGSLTDVVTET-CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS-KRST  174 (296)
T ss_pred             ecCCCcHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccc-cCCC
Confidence            99999999998753 33333      344455677777777776     89999999999999999876542221 2223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhh
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~  219 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++|..||....                  +......+.+++.+||.
T Consensus       175 ~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  254 (296)
T cd06655         175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLE  254 (296)
T ss_pred             cCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhh
Confidence            457889999999988888999999999999999999999986521                  12234567789999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .+|.+||++.+++.
T Consensus       255 ~dp~~Rpt~~~il~  268 (296)
T cd06655         255 MDVEKRGSAKELLQ  268 (296)
T ss_pred             cChhhCCCHHHHhh
Confidence            99999999999984

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.1e-32  Score=238.04  Aligned_cols=209  Identities=15%  Similarity=0.125  Sum_probs=169.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEc-CCCcceeeeeeHH---------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA-PGDKTNIGVKKLD---------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~-~~~~~~vaiK~~~---------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      +|.+.+.||+|+||.||++... ...+..+++|.+.         ++++.++||||+++++++......+++||++. ++
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  171 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CD  171 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CC
Confidence            5999999999999999999864 2356778888764         48889999999999999999999999999996 58


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccccccCCC
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETK  162 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~  162 (266)
                      |.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++......... ......||+
T Consensus       172 l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~  251 (392)
T PHA03207        172 LFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTL  251 (392)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccccccccccccccc
Confidence            999886555544      44556667788898888888     899999999999999999765432221 223456899


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc--------------------------------------
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------------------------------------  204 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------------------------------------  204 (266)
                      .|+|||++.+..++.++|||||||++|+|++|+.||......                                      
T Consensus       252 ~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (392)
T PHA03207        252 ETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIV  331 (392)
T ss_pred             CccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhccc
Confidence            999999999888999999999999999999999988642110                                      


Q ss_pred             --------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 --------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 --------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                    .....+.+++.+||..||.+||++.+++..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        332 LRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             ccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence                          012345568999999999999999999876

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.5e-32  Score=241.57  Aligned_cols=208  Identities=16%  Similarity=0.109  Sum_probs=166.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeee--------HHHHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHH
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKK--------LDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSIS   96 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~--------~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   96 (266)
                      .|.+.+.||+|+||.||++.+. ..++.|++|.        +..+++.++|+||+++++++...+..++|||++. ++|.
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~-~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~  247 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHP-DYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLY  247 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEEC-CCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHH
Confidence            5889999999999999999976 6778899995        3468999999999999999999999999999996 5898


Q ss_pred             HHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccccccCCCC
Q 042690           97 SLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKG  163 (266)
Q Consensus        97 ~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~  163 (266)
                      +++.... .++      +..++..++.++|..+++|+     |||++.++.++|+|||+++........ ......||..
T Consensus       248 ~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~  327 (461)
T PHA03211        248 TYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVD  327 (461)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcC
Confidence            8886532 333      44556666788888888887     899999999999999999865422221 1223568999


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------------------Cc-------------
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------------DP-------------  204 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------------~~-------------  204 (266)
                      |+|||++.+..++.++|||||||++|||++|..++....                          +.             
T Consensus       328 Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~  407 (461)
T PHA03211        328 TNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHR  407 (461)
T ss_pred             CcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhh
Confidence            999999999889999999999999999998775332100                          00             


Q ss_pred             ------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 ------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                        .....+.+++.+||+.||.+|||+.|+++.
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        408 AARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             hhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                              011245679999999999999999999863

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=7.1e-33  Score=231.82  Aligned_cols=208  Identities=16%  Similarity=0.190  Sum_probs=166.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+|++.+.||+|++|+||++.+. .++..+++|.+.               ++++.++||||+++++.+...+..++||
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHI-PTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCM   82 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEc-CCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEE
Confidence            357888999999999999999975 567788887543               3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++...+.+.+      ..++..++.++|+ ++++|+     |+++++++.++|+|||++......   ..
T Consensus        83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~---~~  159 (284)
T cd06620          83 EFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS---IA  159 (284)
T ss_pred             ecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhh---cc
Confidence            99999999999876554433      3344445566664 456665     899999999999999998654221   11


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------cccc
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------PKTL  207 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------~~~~  207 (266)
                      ....++..|+|||++.+..++.++|+|||||++|+++||..||.....                            ....
T Consensus       160 ~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (284)
T cd06620         160 DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFP  239 (284)
T ss_pred             CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchhcC
Confidence            234678999999998888889999999999999999999999864221                            0133


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ..+.+++.+|++.||.+||+++|++++
T Consensus       240 ~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         240 EDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            467789999999999999999999976

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.2e-33  Score=230.54  Aligned_cols=210  Identities=16%  Similarity=0.161  Sum_probs=169.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...|.+.+.||.|++|.||++.+. .++..+++|...              ++++.++|||++++++.+..+...++|||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHK-ETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIE   82 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEc-CCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEee
Confidence            456889999999999999999986 567889998753              37788899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+.+++|.+++.... .+      .+..++..++.++|..+++|+     |++++.++.++|+|||++...... .....
T Consensus        83 ~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~-~~~~~  161 (280)
T cd06611          83 FCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKST-LQKRD  161 (280)
T ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccc-ccccc
Confidence            999999999987643 23      344556666678887777776     899999999999999998764321 11222


Q ss_pred             cccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHH
Q 042690          157 GMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMI  213 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l  213 (266)
                      ...++..|++||.+.     ..+++.++|+||||+++|+|++|+.||....                  +......+.++
T Consensus       162 ~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  241 (280)
T cd06611         162 TFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDF  241 (280)
T ss_pred             eeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHH
Confidence            345788999999864     3457789999999999999999999986521                  12234578899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +.+||+.+|.+||+++++++.
T Consensus       242 i~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         242 LKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             HHHHhccChhhCcCHHHHhcC
Confidence            999999999999999999763

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=2.8e-32  Score=229.30  Aligned_cols=213  Identities=18%  Similarity=0.213  Sum_probs=168.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC---------------CcceeeeeeHH---------------HHhhhcCCCceeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG---------------DKTNIGVKKLD---------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~---------------~~~~vaiK~~~---------------~~l~~~~h~~iv~~   73 (266)
                      ++|.+.+.||+|+||.||+|.+...               .+..+++|.+.               .+++.++||||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~   84 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARL   84 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            5788999999999999999986421               23457888764               36788899999999


Q ss_pred             eeEEEeCCeEEEEEEcCCCCCHHHHHhhcC-----------CCC------HHHHHHHHHHHhhhcCcccc-----ceeec
Q 042690           74 LGYHIEQECRLLVYKFMHNRSISSLLYECL-----------RPT------WQQRMQDCIRDCWRTRALAC-----RILLH  131 (266)
Q Consensus        74 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-----------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~  131 (266)
                      ++++..++..+++|||+.+++|.+++....           .+.      +..++..++.++|.++++|+     |++++
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~  164 (296)
T cd05051          85 LGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVG  164 (296)
T ss_pred             EEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeec
Confidence            999999899999999999999999997654           233      33455566678888888877     89999


Q ss_pred             CCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh--CCCcccCCC------
Q 042690          132 DYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS--CRCVERQGS------  202 (266)
Q Consensus       132 ~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t--g~~p~~~~~------  202 (266)
                      .++.++|+|||++......... ......++..|+|||.+.+..++.++||||||+++|+|++  +..|+....      
T Consensus       165 ~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~  244 (296)
T cd05051         165 KNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIE  244 (296)
T ss_pred             CCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHH
Confidence            9999999999998765322211 1223345678999999888789999999999999999998  455664311      


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                                       +...+..+.+++.+||+.||.+||++.++++.|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         245 NAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             HHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence                             1122357899999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=3.2e-32  Score=225.77  Aligned_cols=214  Identities=19%  Similarity=0.281  Sum_probs=168.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|...+.||+|++|.||+|.....  ....+++|.+.               ++++.++|||++++.+++...+..++||
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (268)
T cd05063           6 HITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIIT   85 (268)
T ss_pred             HceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEE
Confidence            567789999999999999997522  22368888754               3677889999999999999989999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+++|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~  165 (268)
T cd05063          86 EYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTY  165 (268)
T ss_pred             EcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccccce
Confidence            999999999999753 2333      33445566688888887777     89999999999999999986543222111


Q ss_pred             --ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHH
Q 042690          156 --TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 --~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~  216 (266)
                        .....+..|+|||.+.+..++.++|+||||+++|++++ |..||....                .......+.+++.+
T Consensus       166 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~  245 (268)
T cd05063         166 TTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQ  245 (268)
T ss_pred             eccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Confidence              11223457999999888888999999999999999997 898885411                22345577899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ||+.+|.+||++.++++.|+++
T Consensus       246 c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         246 CWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             HcCCCcccCcCHHHHHHHHHhh
Confidence            9999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=1.8e-32  Score=228.59  Aligned_cols=208  Identities=15%  Similarity=0.201  Sum_probs=167.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.|...+.||+|+||.||+|.+. .++..+++|.+.               .+++.+.||||+++++++.+....++|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDN-RTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEc-cCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEe
Confidence            35667889999999999999975 567788998653               26677899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.+++|.+++... .+.      +..++..++..+|..+++|.     ||+++.++.++++|||++....... .....
T Consensus        83 ~~~~~~L~~~i~~~-~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~  160 (277)
T cd06640          83 YLGGGSALDLLRAG-PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ-IKRNT  160 (277)
T ss_pred             cCCCCcHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCc-ccccc
Confidence            99999999998753 332      33455556677787787776     8999999999999999997654222 12223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------C----ccccchHHHHHHHhhhcC
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------D----PKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------~----~~~~~~~~~l~~~cl~~~  221 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|+||..|+....            +    ......+.+++.+||+.+
T Consensus       161 ~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  240 (277)
T cd06640         161 FVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKD  240 (277)
T ss_pred             ccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccC
Confidence            456788999999988889999999999999999999999986421            1    123456778999999999


Q ss_pred             CCCCCCHHHHHHH
Q 042690          222 PPLRPSLRIVALM  234 (266)
Q Consensus       222 p~~Rps~~~il~~  234 (266)
                      |.+||++++++..
T Consensus       241 p~~Rp~~~~il~~  253 (277)
T cd06640         241 PSFRPTAKELLKH  253 (277)
T ss_pred             cccCcCHHHHHhC
Confidence            9999999999765

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2.2e-32  Score=225.16  Aligned_cols=208  Identities=13%  Similarity=0.227  Sum_probs=169.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|...+.||.|+||.||.+... .++..+++|.+.                .+++.++|+||+++++++.+.+..+++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRT-EDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEc-CCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEE
Confidence            4788999999999999999976 667788888543                37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++++|.+++....  .++      +..++..++.++|..+++|.     ||++++++.++|+|||++........ ..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~-~~  158 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS-MA  158 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc-cc
Confidence            999999999997642  232      33445566677777776666     89999999999999999987643221 23


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------ccccchHHHHHHHhhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------PKTLEKPVMIAIQFVK  219 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------~~~~~~~~~l~~~cl~  219 (266)
                      ....++..|+|||.+.+..++.++|+||||+++|+|++|..||.....                ......+.+++.+||.
T Consensus       159 ~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  238 (256)
T cd08221         159 ETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQ  238 (256)
T ss_pred             cccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcc
Confidence            345678999999998888889999999999999999999998865221                2234567889999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 042690          220 EKPPLRPSLRIVALM  234 (266)
Q Consensus       220 ~~p~~Rps~~~il~~  234 (266)
                      .+|.+||+++++++.
T Consensus       239 ~~p~~R~s~~~ll~~  253 (256)
T cd08221         239 QDPEKRPTADEVLDQ  253 (256)
T ss_pred             cCcccCCCHHHHhhC
Confidence            999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.9e-32  Score=227.99  Aligned_cols=215  Identities=21%  Similarity=0.273  Sum_probs=167.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeC--CeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~--~~~~   84 (266)
                      .+|++.+.||+|+||.||++..+   ..++..+++|.+.              ++++.++||||+++++++...  ...+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            37889999999999999999853   3467789998864              377788999999999987543  4688


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++.... .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  163 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKE  163 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCCc
Confidence            9999999999999997543 233      34556666788888888887     89999999999999999987542221


Q ss_pred             cc--cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------------------
Q 042690          153 QT--LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------------  202 (266)
Q Consensus       153 ~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------------  202 (266)
                      ..  .....++..|+|||.+.+..++.++|+||||+++++|++|..++....                            
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (284)
T cd05081         164 YYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNG  243 (284)
T ss_pred             ceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCC
Confidence            11  111223456999999988889999999999999999999865432210                            


Q ss_pred             ----CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          203 ----DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       203 ----~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                          +......+.+++.+||+.+|.+|||+.++++.|+.+
T Consensus       244 ~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         244 RLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence                112335688899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-32  Score=226.84  Aligned_cols=206  Identities=15%  Similarity=0.153  Sum_probs=169.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++.+.||.|++|.||+|.+. .++..+++|.+.               .+++.++|+|++++++++..+...++|+||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDK-RTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEEC-CCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            5778899999999999999976 578889999753               366788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           90 MHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      +.+++|.+++... .+      .+..++..++.++|..++.|.     |++++.++.++|+|||++....... ......
T Consensus        81 ~~~~~L~~~~~~~-~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~  158 (274)
T cd06609          81 CGGGSCLDLLKPG-KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM-SKRNTF  158 (274)
T ss_pred             eCCCcHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccc-cccccc
Confidence            9999999999764 32      334555566677888887777     8999999999999999998764321 222345


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------C----cc-ccchHHHHHHHhhhcC
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------D----PK-TLEKPVMIAIQFVKEK  221 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------~----~~-~~~~~~~l~~~cl~~~  221 (266)
                      .++..|+|||.+.+..++.++|+||||+++|+|+||..||....            .    .. ....+.+++.+||..+
T Consensus       159 ~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  238 (274)
T cd06609         159 VGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKD  238 (274)
T ss_pred             cCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCC
Confidence            67888999999988889999999999999999999999986421            1    11 4456889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+||+++++++
T Consensus       239 p~~Rpt~~~il~  250 (274)
T cd06609         239 PKERPSAKELLK  250 (274)
T ss_pred             hhhCcCHHHHhh
Confidence            999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3e-33  Score=218.10  Aligned_cols=215  Identities=17%  Similarity=0.140  Sum_probs=169.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCC-----eE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQE-----CR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~-----~~   83 (266)
                      -+.|.+.++||+|+|+.||.+... .++..+|+|++.              +..++++|||+++++++...+.     ..
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~-s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGL-STGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             CceEEEeeeecCCCceeeeeeccc-CcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            358999999999999999999965 688889999876              3677899999999999875433     48


Q ss_pred             EEEEEcCCCCCHHHHHhhcC----CCCHH------HHHHHHHHHhh-------hcCccccceeecCCCEEEEeecCccee
Q 042690           84 LLVYKFMHNRSISSLLYECL----RPTWQ------QRMQDCIRDCW-------RTRALACRILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~----~~~~~------~~l~~~~~~~~-------~~~~~h~nili~~~~~~~l~Dfg~a~~  146 (266)
                      |++++|...|+|.+.+....    ..+..      ..+..++..+|       |+++.+.||++++++.+++.|||.+..
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            99999999999999997532    23333      33344444444       445556699999999999999999986


Q ss_pred             eccc---cc-----cccccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccC---------------
Q 042690          147 LMIN---QT-----QTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------  200 (266)
Q Consensus       147 ~~~~---~~-----~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------  200 (266)
                      ....   ..     ........|..|.|||.+.   +...+.++|||||||++|+|+.|..||..               
T Consensus       179 a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~  258 (302)
T KOG2345|consen  179 APIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNA  258 (302)
T ss_pred             cceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeecc
Confidence            4210   00     0112356799999999875   45678999999999999999999999965               


Q ss_pred             ----CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          201 ----GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       201 ----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                          .....+++.+.+++..|++.||.+||++.+++..++..
T Consensus       259 q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  259 QISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             ccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence                22334778889999999999999999999999887754

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=3e-32  Score=225.18  Aligned_cols=211  Identities=22%  Similarity=0.359  Sum_probs=162.6

Q ss_pred             eccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe-CCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE-QECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv~e~~~   91 (266)
                      +.||+|+||.||+|.+..  .....+++|.+.               .+++.++|||++++++++.. ++..+++|||+.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            468999999999998642  345678988763               25678899999999998764 556789999999


Q ss_pred             CCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc---cccc
Q 042690           92 NRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT---QTLT  156 (266)
Q Consensus        92 ~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~---~~~~  156 (266)
                      +++|.+++..... ..      +..++..++.++|..+++|+     ||+++.++.++|+|||+++.......   ....
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  160 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHT  160 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccc
Confidence            9999999975332 22      33456666788888888876     89999999999999999975432111   1112


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCC-CcccCC----------------CCccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR-CVERQG----------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~-~p~~~~----------------~~~~~~~~~~~l~~~cl~  219 (266)
                      ...++..|+|||.+.+..++.++||||||+++|+|++|. +|+...                .+...+..+.+++.+||.
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  240 (262)
T cd05058         161 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWH  240 (262)
T ss_pred             cCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcC
Confidence            234567899999988888999999999999999999964 455431                112234578899999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHh
Q 042690          220 EKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .+|.+||++.++++.|+.+..
T Consensus       241 ~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         241 PKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             CChhhCCCHHHHHHHHHHHhc
Confidence            999999999999999998753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.7e-32  Score=226.73  Aligned_cols=208  Identities=19%  Similarity=0.250  Sum_probs=161.2

Q ss_pred             eccCCCcceEEEEEEEcCCC-cceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGD-KTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~-~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||+|.+.... ...+++|...               ++++.+ +||||+++++++...+..+++|||+.+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            36899999999999975222 2346777654               255567 799999999999998899999999999


Q ss_pred             CCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           93 RSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        93 ~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      ++|.+++....                .+      .+..++..++.++|..+++|+     |++++.++.++|+|||++.
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~  160 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence            99999997532                12      233455566688888787776     8999999999999999986


Q ss_pred             eeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Cccccc
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLE  208 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~  208 (266)
                      ....  .........+..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +.....
T Consensus       161 ~~~~--~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (270)
T cd05047         161 GQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDD  238 (270)
T ss_pred             ccch--hhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCCCCCCCcCCH
Confidence            4221  111111223567999999888889999999999999999997 888885411                122345


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                      .+.+++.+||..+|.+||++.+++..|+.+.
T Consensus       239 ~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         239 EVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             HHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            6788999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.8e-32  Score=225.46  Aligned_cols=208  Identities=15%  Similarity=0.167  Sum_probs=168.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      .+|.+.+.||+|++|.||++.+. .++..+++|.+.            +.++.++||||+++++.+..+...++++||+.
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   81 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHK-ETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCG   81 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEc-CCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCC
Confidence            46888899999999999999986 457788888755            35778899999999999999999999999999


Q ss_pred             CCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           92 NRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        92 ~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      +++|.+++.... .+.      +..++..++.++|..++.|.     ||+++.++.++|+|||++........ ......
T Consensus        82 ~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~  160 (256)
T cd06612          82 AGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA-KRNTVI  160 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc-cccccc
Confidence            999999997533 233      44455566677777777766     89999999999999999987543221 222344


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ++..|++||.+.+..++.++|+||||+++|+|++|+.|+....                  +......+.+++.+||+.+
T Consensus       161 ~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  240 (256)
T cd06612         161 GTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKD  240 (256)
T ss_pred             CCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcC
Confidence            7889999999988889999999999999999999999886421                  1123346788999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+||++.++++
T Consensus       241 P~~Rps~~~il~  252 (256)
T cd06612         241 PEERPSAIQLLQ  252 (256)
T ss_pred             hhhCcCHHHHhc
Confidence            999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=4.4e-32  Score=223.45  Aligned_cols=208  Identities=18%  Similarity=0.239  Sum_probs=167.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe-CCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE-QECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv~   87 (266)
                      .|++.+.||.|++|.||++.+. .++..+++|++.                ++++.++|+|++++++.+.. +...+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHR-TDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEc-CCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEe
Confidence            4788999999999999999975 567789998753                36778899999999988764 44678999


Q ss_pred             EcCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+++++|.+++....  .+      .+..++..++..+|..+++|+     ||+++.++.++|+|||++....... ..
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~-~~  158 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC-DM  158 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccC-Cc
Confidence            9999999999997632  22      344555566678888887776     8999999999999999998764222 22


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl  218 (266)
                      .....+++.|+|||.+.+..++.++|+||||+++++|++|+.||....                +......+.+++.+|+
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  238 (257)
T cd08223         159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELGELIATML  238 (257)
T ss_pred             cccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHh
Confidence            234567889999999998889999999999999999999999886521                1234466888999999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALM  234 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~  234 (266)
                      +.+|.+||++.++++.
T Consensus       239 ~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         239 SKRPEKRPSVKSILRQ  254 (257)
T ss_pred             ccCcccCCCHHHHhcC
Confidence            9999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=1.9e-32  Score=228.89  Aligned_cols=207  Identities=15%  Similarity=0.165  Sum_probs=165.2

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      |++.+.||+|+||.||++.+. .++..+++|.+.              ++++.++|||++++++++..++..++||||+.
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNK-ETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEEC-CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            567889999999999999975 567778887653              36778899999999999999999999999999


Q ss_pred             CCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           92 NRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        92 ~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      +++|..++... ..++      +..++..++.++|..+++|+     |++++.++.++|+|||++...... ........
T Consensus        86 ~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~  164 (282)
T cd06643          86 GGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT-IQRRDSFI  164 (282)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEcccccccccccc-cccccccc
Confidence            99999987642 2333      44556666688888887777     899999999999999998764321 11223456


Q ss_pred             CCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHH
Q 042690          160 ETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       160 ~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~  216 (266)
                      ++..|+|||.+.     +..++.++|+||+|+++|+|++|..||....                  +......+.+++.+
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (282)
T cd06643         165 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKK  244 (282)
T ss_pred             ccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHH
Confidence            788999999873     4457889999999999999999999986411                  12234568899999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~  234 (266)
                      ||+.+|.+||++.++++.
T Consensus       245 ~l~~~p~~Rp~~~~il~~  262 (282)
T cd06643         245 CLEKNVDARWTTTQLLQH  262 (282)
T ss_pred             HccCChhhCcCHHHHhcC
Confidence            999999999999988743

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=4.5e-32  Score=226.80  Aligned_cols=207  Identities=18%  Similarity=0.233  Sum_probs=166.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|+..+.||+|++|.||+|.++ .+++.+++|++.                .+++.++|||++++++++......++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNR-ETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEEC-CCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            6888899999999999999976 567889998653                37778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+++++|..++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........ ....
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~  159 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGD-DYTD  159 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcc-cccC
Confidence            999988888876544444      34455566677887777776     89999999999999999987643221 2223


Q ss_pred             ccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..++..|+|||.+.+ ..++.++|+||||+++|+|++|..||.....                                 
T Consensus       160 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (286)
T cd07847         160 YVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSI  239 (286)
T ss_pred             cccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccC
Confidence            456789999998765 4578899999999999999999998864221                                 


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+||+.+|++||++.+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         240 PEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             CCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                         112345678999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.7e-32  Score=226.63  Aligned_cols=207  Identities=16%  Similarity=0.213  Sum_probs=164.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEeC------CeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIEQ------ECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~~------~~~~   84 (266)
                      .|.+.+.||+|+||.||+|.+. .++..+++|...             .+++.+ +|||++++++++...      ...+
T Consensus         7 ~y~~~~~lg~g~~g~vy~~~~~-~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~   85 (272)
T cd06637           7 IFELVELVGNGTYGQVYKGRHV-KTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLW   85 (272)
T ss_pred             hhhHHHheeecCCeEEEEEEEc-CCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEE
Confidence            5667789999999999999976 678889998763             245566 699999999998753      4588


Q ss_pred             EEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           85 LVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++|||+.+++|.+++....  .+.      +..++..++.++|+.+++|+     ||++++++.++|+|||++...... 
T Consensus        86 iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~-  164 (272)
T cd06637          86 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT-  164 (272)
T ss_pred             EEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecccc-
Confidence            9999999999999998643  233      44566667788888888887     899999999999999999765321 


Q ss_pred             ccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------Cccccch
Q 042690          152 TQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEK  209 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~  209 (266)
                      ........++..|+|||.+.     +..++.++|+||+|+++|+|++|..||....                 .......
T Consensus       165 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (272)
T cd06637         165 VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKK  244 (272)
T ss_pred             cccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCCCCCCCcCHH
Confidence            12223456788999999875     3357889999999999999999999885411                 1223457


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+++.+||..+|.+||++.++++
T Consensus       245 ~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         245 FQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhh
Confidence            889999999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.8e-32  Score=228.14  Aligned_cols=207  Identities=21%  Similarity=0.239  Sum_probs=166.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||+|.++ .++..+++|+..                ++++.++||||+++++++..++..++|||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHK-ETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEEC-CCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            6888999999999999999985 567889999764                36678899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+++++|..+......+++.      .++..++.++|..++.|.     |++++.++.++|+|||++....... .....
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~~~  159 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG-EVYTD  159 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc-cccCc
Confidence            99999998887654444443      445556677888887777     8999999999999999988754322 22233


Q ss_pred             ccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..++..|+|||.+.+ ..++.++|+||||+++|+|++|.+||.....                                 
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (286)
T cd07846         160 YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRL  239 (286)
T ss_pred             ccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcccc
Confidence            557889999998765 3467889999999999999999988753221                                 


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+||+.+|.+||++.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         240 PEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             ccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence                         122445778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.9e-32  Score=225.07  Aligned_cols=207  Identities=17%  Similarity=0.252  Sum_probs=168.1

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      |.+.+.||+|++|.||+|... .++..+++|.+.                       .+++.++||||+++++++.....
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNA-SSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             ccccceeecCCCeEEEEEEec-CCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            566789999999999999975 567788888442                       36778899999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .+++|||+++++|.+++.....++      +..++..++..+|..+++|+     ||+++.++.++|+|||.++......
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANS  160 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccccc
Confidence            999999999999999998655543      34555666688888888777     8999999999999999998764221


Q ss_pred             cc-----ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccccchH
Q 042690          152 TQ-----TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTLEKP  210 (266)
Q Consensus       152 ~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~~~~  210 (266)
                      ..     ......++..|+|||.+.+..++.++|+||+|+++|+|++|+.||...                .+......+
T Consensus       161 ~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (267)
T cd06628         161 LSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASPEIPSNISSEA  240 (267)
T ss_pred             ccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCCcCCcccCHHH
Confidence            11     111235788999999998888899999999999999999999998651                122345667


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.+|.+||++.++++
T Consensus       241 ~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         241 IDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             HHHHHHHccCCchhCcCHHHHhh
Confidence            88999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-32  Score=225.41  Aligned_cols=208  Identities=14%  Similarity=0.159  Sum_probs=168.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .+|.+.+.||+|++|.||+|.+. .++..+++|.+.              .+++.++||||+++++++......+++|||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDI-ATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEec-CCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            57889999999999999999975 456678887643              377788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +.+++|.+++... ..+.      +..++..++.++|..++.|.     ||++++++.++|+|||++...... ......
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~-~~~~~~  160 (262)
T cd06613          82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTAT-IAKRKS  160 (262)
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhh-hhcccc
Confidence            9999999999765 3433      34455666677777777776     899999999999999998765421 112233


Q ss_pred             ccCCCCcCCccccCCC---CCCcccchhhHHHHHHHHHhCCCcccCCC--------------------CccccchHHHHH
Q 042690          158 MRETKGYLPPEWFRNM---PVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------DPKTLEKPVMIA  214 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~---~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------~~~~~~~~~~l~  214 (266)
                      ..++..|+|||.+.+.   .++.++|+||||+++|+|+||+.|+....                    .......+.+++
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  240 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFI  240 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHH
Confidence            4578889999998766   78899999999999999999999986521                    111235678999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||..+|..||++.+++.
T Consensus       241 ~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         241 KKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             HHHcCCChhhCCCHHHHhc
Confidence            9999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=3.3e-32  Score=226.11  Aligned_cols=212  Identities=19%  Similarity=0.241  Sum_probs=163.9

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCc-ceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------CeE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDK-TNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------ECR   83 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~-~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------~~~   83 (266)
                      .+.+.||+|+||.||+|.+..... ..+|+|.+.                ..++.++||||+++++++...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            456889999999999999752222 357888643                367788999999999987532      246


Q ss_pred             EEEEEcCCCCCHHHHHhhc------CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           84 LLVYKFMHNRSISSLLYEC------LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~------~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      +++|||+.+++|.+++...      ..+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++..
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~  161 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKK  161 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccc
Confidence            8999999999999988421      112      334556677788898888887     89999999999999999987


Q ss_pred             ecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccc
Q 042690          147 LMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLE  208 (266)
Q Consensus       147 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~  208 (266)
                      ....... ......++..|++||...+..++.++|+||||+++|+|++ |+.||...                .++....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (272)
T cd05075         162 IYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRLKQPPDCLD  241 (272)
T ss_pred             cCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCH
Confidence            5422211 1122345678999999988889999999999999999999 77788641                1233446


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      .+.+++.+||+.||.+||++.++++.|+..
T Consensus       242 ~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         242 GLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            688899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-32  Score=227.03  Aligned_cols=208  Identities=18%  Similarity=0.204  Sum_probs=168.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||+|.+. .++..|++|.+.                ++++.++|+||+++++++..++..+++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~-~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNK-ATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeC-CCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            6889999999999999999976 567889999764                36678899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.++.+..+......+.      +..++..++.++|..+++|.     ||++++++.++|+|||++.............
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~  160 (288)
T cd07833          81 YVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTD  160 (288)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccC
Confidence            999877776665444333      34456677788888888887     8999999999999999998765333223334


Q ss_pred             ccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC----------------------------------
Q 042690          158 MRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------------------  202 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------------------  202 (266)
                      ..++..|+|||.+.+. .++.++|+||||+++|+|++|+.||....                                  
T Consensus       161 ~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (288)
T cd07833         161 YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAF  240 (288)
T ss_pred             cccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCcccccccc
Confidence            5678889999998877 78899999999999999999998875321                                  


Q ss_pred             -------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +......+.+++.+||..+|++||+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         241 PEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             CCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                         0112466789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-32  Score=227.16  Aligned_cols=211  Identities=20%  Similarity=0.332  Sum_probs=168.0

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +|.+..|.+.+.||+|++|.||+|..+ .++..|++|.+.               ++++.++||||+++++++.+....+
T Consensus         1 ~~~~~~y~~~~~lg~g~~~~vy~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   79 (291)
T cd07844           1 FGKLETYKKLDKLGEGSYATVYKGRSK-LTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLT   79 (291)
T ss_pred             CCCccceeEEEEEeecCCeEEEEEEEc-CCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEE
Confidence            366789999999999999999999975 567889998753               4778889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+ +|.+++..... +      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...... .
T Consensus        80 lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-~  157 (291)
T cd07844          80 LVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVP-S  157 (291)
T ss_pred             EEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCC-C
Confidence            99999985 99998875432 2      234567777788888888887     899999999999999998754211 1


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+ ..++.++|+||+|+++|+|++|+.||.....                            
T Consensus       158 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (291)
T cd07844         158 KTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPE  237 (291)
T ss_pred             ccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccc
Confidence            11122345788999998765 4578899999999999999999998853220                            


Q ss_pred             ------------------cccc--chHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------PKTL--EKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------~~~~--~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        +...  ....+++.+|++.+|.+||++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         238 FKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             cccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                              0111  45568999999999999999999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=5.6e-32  Score=231.59  Aligned_cols=219  Identities=19%  Similarity=0.234  Sum_probs=172.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC------CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP------GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~------~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      .+|.+.+.||+|+||.||+|.+..      .....+++|.+.               .+++++ +||||+++++++..++
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            368899999999999999998531      123367888653               366677 7999999999999888


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC----------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC
Q 042690           82 CRLLVYKFMHNRSISSLLYECL----------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF  134 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~----------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~  134 (266)
                      ..+++|||+.+++|.+++....                .+.      +..++..++.++|.++++|+     ||+++.++
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~  171 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDN  171 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCC
Confidence            9999999999999999997532                122      34466677788888888877     89999999


Q ss_pred             EEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-----------
Q 042690          135 TVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-----------  201 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-----------  201 (266)
                      .++|+|||+++........ ......++..|+|||.+.+..++.++||||||+++|+|++ |..||...           
T Consensus       172 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~  251 (334)
T cd05100         172 VMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKE  251 (334)
T ss_pred             cEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHc
Confidence            9999999999765322111 1122334567999999988889999999999999999998 77777541           


Q ss_pred             -----CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          202 -----SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       202 -----~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                           .+......+.+++.+||+.+|.+||++.++++.|+.+....
T Consensus       252 ~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~  297 (334)
T cd05100         252 GHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVT  297 (334)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence                 12233457788999999999999999999999999987443

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=3.7e-32  Score=223.87  Aligned_cols=207  Identities=20%  Similarity=0.248  Sum_probs=170.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|+||.||++... .+++.+++|++.                .+++.++||||+++++++...+..++|||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSK-EDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEc-CCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEe
Confidence            4788999999999999999976 567889998653                37788899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++.....        ..+..++..++..+|..+++|.     |++++.++.++++|||.+....... ...
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~  158 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTV-ELA  158 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcch-hhh
Confidence            9999999999875321        3455667777788888888887     8999999999999999997653221 112


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ....++..|+|||.+.+..++.++|+||||+++++|++|..|+....                +......+.+++.+||+
T Consensus       159 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  238 (256)
T cd08218         159 RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFK  238 (256)
T ss_pred             hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhh
Confidence            23457888999999988888999999999999999999999886421                22344567899999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .+|.+||+++++++
T Consensus       239 ~~p~~Rp~~~~vl~  252 (256)
T cd08218         239 RNPRDRPSVNSILE  252 (256)
T ss_pred             CChhhCcCHHHHhh
Confidence            99999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=3.9e-32  Score=228.03  Aligned_cols=203  Identities=17%  Similarity=0.162  Sum_probs=168.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|++|.||++.+. .+++.+++|.+.                 ++++.++||||+++++++......++||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHK-GSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEc-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            6889999999999999999986 567889998653                 3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||+.+++|.+++.....++      +..++..++..+|..+++|.     ||+++.++.++|+|||++......    ..
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~----~~  156 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR----TY  156 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC----CC
Confidence            9999999999998766544      33456666688888888777     899999999999999999875422    23


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcC
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ...+++.|+|||.+.+...+.++|+||||+++|+|++|..||....               +......+.+++.+||+.|
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  236 (290)
T cd05580         157 TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVD  236 (290)
T ss_pred             CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCC
Confidence            3457889999999888888899999999999999999999986522               2234567778999999999


Q ss_pred             CCCCC-----CHHHHH
Q 042690          222 PPLRP-----SLRIVA  232 (266)
Q Consensus       222 p~~Rp-----s~~~il  232 (266)
                      |.+|+     +++|++
T Consensus       237 p~~R~~~~~~~~~~l~  252 (290)
T cd05580         237 LTKRLGNLKNGVNDIK  252 (290)
T ss_pred             HHHccCcccCCHHHHH
Confidence            99999     666665

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=5.9e-32  Score=225.67  Aligned_cols=218  Identities=17%  Similarity=0.223  Sum_probs=172.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC---CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe-CCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE-QECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~---~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~-~~~~   83 (266)
                      -.+|.+.+.||+|+||.||+|.+..   ..+..+++|.+.               ..++.++||||+++++++.. +...
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            3578899999999999999999853   126778888665               26778899999999998876 4668


Q ss_pred             EEEEEcCCCCCHHHHHhhcC--------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           84 LLVYKFMHNRSISSLLYECL--------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~--------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                      ++++||+.+++|.+++....        .++      +..++..++.++|..+++|+     |++++.++.++++|||++
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~  164 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALS  164 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCc
Confidence            89999999999999987532        233      33455566678888888777     899999999999999999


Q ss_pred             eeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Cccc
Q 042690          145 KLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKT  206 (266)
Q Consensus       145 ~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~  206 (266)
                      +........ ......++..|+|||.+.+..++.++||||||+++|++++ |+.||....                ....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  244 (280)
T cd05043         165 RDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINC  244 (280)
T ss_pred             ccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCCCCCCCcC
Confidence            865322221 1122345678999999988889999999999999999999 888886411                1223


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ...+.+++.+||..+|++||++.++++.|+.+.+
T Consensus       245 ~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         245 PDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            4568899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=4.2e-32  Score=225.38  Aligned_cols=206  Identities=23%  Similarity=0.267  Sum_probs=157.8

Q ss_pred             eccCCCcceEEEEEEEcC-CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      +.||+|+||.||+|.+.. .....+++|.+.               .+++.++||||+++++++.+....++||||++++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            468999999999998642 345568888664               2667889999999999999888899999999999


Q ss_pred             CHHHHHhhcCC-----C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc-cc
Q 042690           94 SISSLLYECLR-----P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT-LT  156 (266)
Q Consensus        94 ~L~~~l~~~~~-----~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~-~~  156 (266)
                      +|.+++.....     .      .+..++..++.++|..+++|+     |++++.++.++|+|||.+.......... ..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~  160 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPD  160 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCC
Confidence            99999974321     1      234566677788888888776     8999999999999999987543221111 12


Q ss_pred             cccCCCCcCCccccCCC-------CCCcccchhhHHHHHHHHHh-CCCcccCCCC-----------------c----ccc
Q 042690          157 GMRETKGYLPPEWFRNM-------PVTVKVDVYSFGVMLLEIIS-CRCVERQGSD-----------------P----KTL  207 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-------~~~~~~Di~slG~i~~~l~t-g~~p~~~~~~-----------------~----~~~  207 (266)
                      ...++..|+|||.+.+.       .++.++|+||||+++|+|++ |..||.....                 +    ...
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
T cd05087         161 QLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLS  240 (269)
T ss_pred             CcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCC
Confidence            24467789999987532       35789999999999999996 9888864111                 0    123


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ..+.+++.+|+ .+|.+||++++|++.|+
T Consensus       241 ~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         241 DRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             hHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            45667999998 68999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=7.3e-32  Score=225.70  Aligned_cols=211  Identities=15%  Similarity=0.144  Sum_probs=165.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEE-----eCCe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHI-----EQEC   82 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~-----~~~~   82 (266)
                      ...+|++.+.||+|+||.||++... .++..+++|...             .+++.+ +||||+++++++.     .++.
T Consensus        16 ~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~   94 (286)
T cd06638          16 PSDTWEIIETIGKGTYGKVFKVLNK-KNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQ   94 (286)
T ss_pred             cccceeeeeeeccCCCcEEEEEEEC-CCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCe
Confidence            3458899999999999999999976 567788898754             246666 6999999999874     3456


Q ss_pred             EEEEEEcCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           83 RLLVYKFMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      .++||||+++++|.+++...    ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...
T Consensus        95 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~  174 (286)
T cd06638          95 LWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQL  174 (286)
T ss_pred             EEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeec
Confidence            89999999999999987532    2233      44566677788888887777     899999999999999998865


Q ss_pred             ccccccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------c
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------P  204 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~  204 (266)
                      ... ........++..|+|||.+.     +..++.++|+||+|+++|+|++|+.|+.....                  .
T Consensus       175 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  253 (286)
T cd06638         175 TST-RLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPE  253 (286)
T ss_pred             ccC-CCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCC
Confidence            422 11222345789999999875     34478899999999999999999998764211                  1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .....+.+++.+||+.||.+||++.|+++.
T Consensus       254 ~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         254 LWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             CcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            123467889999999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.2e-32  Score=229.51  Aligned_cols=207  Identities=16%  Similarity=0.220  Sum_probs=167.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .|...+.||+|++|.||+|.+. .++..+++|.+.               +.++.++||||+++++++..+...++||||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDN-RTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEc-CCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEc
Confidence            4667789999999999999875 567788998754               266788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      +.+++|.+++... .+.      +..++..++.++|..+++|.     ||+++.++.++|+|||++...... .......
T Consensus        84 ~~~~~L~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~-~~~~~~~  161 (277)
T cd06642          84 LGGGSALDLLKPG-PLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDT-QIKRNTF  161 (277)
T ss_pred             cCCCcHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCc-chhhhcc
Confidence            9999999998643 222      33455566677887777776     899999999999999999765422 1122234


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhhcCC
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      .++..|+|||.+.+..++.++|+||||+++|+|++|..|+....                .......+.+++.+||+.+|
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  241 (277)
T cd06642         162 VGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDP  241 (277)
T ss_pred             cCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCc
Confidence            57889999999988888999999999999999999999986421                11234467889999999999


Q ss_pred             CCCCCHHHHHHH
Q 042690          223 PLRPSLRIVALM  234 (266)
Q Consensus       223 ~~Rps~~~il~~  234 (266)
                      .+||++.++++.
T Consensus       242 ~~Rp~~~~il~~  253 (277)
T cd06642         242 RFRPTAKELLKH  253 (277)
T ss_pred             ccCcCHHHHHHh
Confidence            999999999974

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=3.7e-32  Score=229.66  Aligned_cols=220  Identities=20%  Similarity=0.298  Sum_probs=172.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCc---ceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDK---TNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~---~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|+..+.||+|+||.||+|.+.....   ..+++|.+.               .+++.++||||+++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            467888999999999999999752222   246777554               366788999999999998754 4668


Q ss_pred             EEEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++||+++|+|.+++.....       ..+..++..++.++|..+++|+     ||+++.++.++|+|||+++........
T Consensus        86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  165 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKE  165 (303)
T ss_pred             eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccc
Confidence            9999999999999876432       3445667777788888888887     899999999999999999875422221


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~  215 (266)
                       ......++..|+|||.+.+..++.++||||||+++|+|++ |..||....                ++.....+.+++.
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  245 (303)
T cd05110         166 YNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGERLPQPPICTIDVYMVMV  245 (303)
T ss_pred             cccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Confidence             1122344678999999988889999999999999999997 788885411                1223456778999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      +||..+|.+||+++++++.|..+.+.+..
T Consensus       246 ~c~~~~p~~Rp~~~~l~~~l~~~~~~~~~  274 (303)
T cd05110         246 KCWMIDADSRPKFKELAAEFSRMARDPQR  274 (303)
T ss_pred             HHcCCChhhCcCHHHHHHHHHHHHhchhh
Confidence            99999999999999999999998776653

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=4.7e-32  Score=224.44  Aligned_cols=207  Identities=18%  Similarity=0.229  Sum_probs=166.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +|...+.||.|+||.||+|..  .++..+++|.+.                    +.++.++|+||+++++++.+....+
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~--~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   78 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT--NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTIS   78 (265)
T ss_pred             CccccceEeccCCeEEEEEEE--cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEE
Confidence            366788999999999999986  367788888542                    3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc---
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN---  150 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~---  150 (266)
                      ++|||+++++|.+++.+...+.      +..++..++..+|..++.|.     |++++.++.++|+|||++......   
T Consensus        79 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  158 (265)
T cd06631          79 IFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLH  158 (265)
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhcccc
Confidence            9999999999999998655433      33455566677887777776     899999999999999998764211   


Q ss_pred             --cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC------------------CCccccchH
Q 042690          151 --QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG------------------SDPKTLEKP  210 (266)
Q Consensus       151 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~------------------~~~~~~~~~  210 (266)
                        .........++..|+|||.+.+..++.++|+||||+++|+|++|..||...                  .+......+
T Consensus       159 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
T cd06631         159 GTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAA  238 (265)
T ss_pred             ccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHH
Confidence              111122345788999999998888899999999999999999999998641                  122234567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.+|.+||++.+++.
T Consensus       239 ~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         239 IDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             HHHHHHHhcCCcccCCCHHHHhc
Confidence            88999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2.7e-32  Score=228.14  Aligned_cols=206  Identities=18%  Similarity=0.252  Sum_probs=163.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||+|.+. .++..+++|++.                .+++.++||||+++++++.+....++++|
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~-~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNR-ETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             CceeEEEecccCCeEEEEEEEC-CCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEe
Confidence            4778899999999999999986 567788988763                36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+.+ +|.+++... ..+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...... .....
T Consensus        80 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~  157 (284)
T cd07839          80 YCDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIP-VRCYS  157 (284)
T ss_pred             cCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCC-CCCcC
Confidence            9975 888887643 333      344556677788888888887     899999999999999999765321 11223


Q ss_pred             cccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          157 GMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ...++..|+|||.+.+. .++.++|+||||+++|+|+||..|+..+..                                
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07839         158 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPY  237 (284)
T ss_pred             CCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhccccccc
Confidence            34568899999987664 468899999999999999999887532111                                


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+||+.||.+|||+++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         238 PMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             CCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence                         123355678999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5.3e-32  Score=226.39  Aligned_cols=207  Identities=16%  Similarity=0.217  Sum_probs=167.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||+|.+. .++..+++|++.                .+++.++||||+++++++..+...++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDR-ETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             CceEEeecccCCCcEEEEEEEC-CCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEec
Confidence            4788999999999999999975 567888988764                36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+ +++|.+++.... .+      .+..++..++.++|.++++|.     ||+++.++.++|+|||.+............
T Consensus        80 ~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~  158 (286)
T cd07832          80 YM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYS  158 (286)
T ss_pred             cc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccc
Confidence            99 999999986533 22      344556667788888888887     899999999999999999876433222233


Q ss_pred             cccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          157 GMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ...++..|+|||.+.+. .++.++||||+|+++++|+||.++|.....                                
T Consensus       159 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T cd07832         159 HQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKIT  238 (286)
T ss_pred             cccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhccc
Confidence            45678899999987654 468899999999999999999777743210                                


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+|+..+|.+||+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         239 FPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             CCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                         123466678999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=5.7e-32  Score=228.68  Aligned_cols=213  Identities=14%  Similarity=0.148  Sum_probs=170.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||++.+. ..+..|++|.+.                 .+++.++||||+++++.+..++..++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHK-ETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEEC-CCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            6788999999999999999976 667889998654                 2567789999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc----
Q 042690           88 KFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT----  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~----  152 (266)
                      ||+++++|.+++.....+.+      ..++..++.++|..+++|+     ||+++.++.++|+|||+++.......    
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~  160 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLY  160 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCcccccc
Confidence            99999999999987655433      3445566788888888887     89999999999999999864211000    


Q ss_pred             ----------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------c
Q 042690          153 ----------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------P  204 (266)
Q Consensus       153 ----------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~  204 (266)
                                .......++..|+|||.+.+..++.++|+||||+++|+|++|..||.+...                  .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  240 (305)
T cd05609         161 EGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDE  240 (305)
T ss_pred             ccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccc
Confidence                      011123567889999998888889999999999999999999999865211                  1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      .....+.+++.+||+.+|.+||++.++++.|+..
T Consensus       241 ~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~  274 (305)
T cd05609         241 ALPADAQDLISRLLRQNPLERLGTGGAFEVKQHR  274 (305)
T ss_pred             cCCHHHHHHHHHHhccChhhccCccCHHHHHhCc
Confidence            2345678999999999999999987777777663

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=8.1e-32  Score=221.89  Aligned_cols=207  Identities=25%  Similarity=0.331  Sum_probs=167.5

Q ss_pred             eccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||+|.+..  ..+..+++|.+.               +.++.++|+|++++++++......+++|||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            478999999999999852  127778888765               366778899999999999998899999999999


Q ss_pred             CCHHHHHhhc---------CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           93 RSISSLLYEC---------LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        93 ~~L~~~l~~~---------~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++|.+++...         ..++      +..++..++..+|..+++|.     ||+++.++.++|+|||.+........
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~  160 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDY  160 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccc
Confidence            9999999875         3333      44555566677787777776     89999999999999999987643221


Q ss_pred             -cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHH
Q 042690          153 -QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIA  214 (266)
Q Consensus       153 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~  214 (266)
                       .......++..|+|||.+.+..++.++|+||||+++++|++ |..||...                .+...+..+.+++
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  240 (262)
T cd00192         161 YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELM  240 (262)
T ss_pred             cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHH
Confidence             22334556889999999888788999999999999999999 58888652                1334457888999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      .+||+.+|.+||++.++++.|+
T Consensus       241 ~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         241 LSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             HHHccCCcccCcCHHHHHHhhC
Confidence            9999999999999999998773

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-32  Score=231.92  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=178.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcC-CCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAH-HKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~-h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..|.+.+.||.|.||.||++..+ .++..+|+|.+.                 .+|+.+. |||||.+++++++....++
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~-~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREK-STGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEec-CCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            36888889999999999999976 679999999876                 3888888 9999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcC-C----CCHHHHHHHHHHHhhhcCcccc-----ceeecCC----CEEEEeecCcceeecccc
Q 042690           86 VYKFMHNRSISSLLYECL-R----PTWQQRMQDCIRDCWRTRALAC-----RILLHDY----FTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~----~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||+|.||.|.+.+.... .    .....++..+++++|..+++|+     |+|+...    +.++++|||++.....  
T Consensus       114 vmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~--  191 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP--  191 (382)
T ss_pred             EEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC--
Confidence            999999999999997651 1    2344667777799999999998     7888643    4799999999998753  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~  212 (266)
                      ........||+.|+|||.+...+++..+||||+|+++|.|++|.+||....                   -+.......+
T Consensus       192 ~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd  271 (382)
T KOG0032|consen  192 GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKD  271 (382)
T ss_pred             CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHH
Confidence            555667889999999999998899999999999999999999999998732                   2334567778


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ++..++..||..|+++.++++-
T Consensus       272 ~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  272 FIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             HHHHhcccCcccCCCHHHHhcC
Confidence            9999999999999999999984

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.5e-32  Score=221.76  Aligned_cols=205  Identities=21%  Similarity=0.230  Sum_probs=162.8

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ++||+|++|.||++.+.  .+..+++|...               ++++.++||||+++++++......++||||+.+++
T Consensus         1 ~~lg~g~~g~v~~~~~~--~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLK--GNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEe--CCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCc
Confidence            47899999999999975  38889998654               36778899999999999999999999999999999


Q ss_pred             HHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc-ccccCC
Q 042690           95 ISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL-TGMRET  161 (266)
Q Consensus        95 L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~-~~~~~~  161 (266)
                      |.+++.... .+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++........... .....+
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~  158 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIP  158 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcce
Confidence            999996532 222      33445556677787777776     89999999999999999976432111111 112235


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhhcCCCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~p~~  224 (266)
                      ..|+|||.+.+..++.++|+||||+++|+|+| |..||....                +...+..+.+++.+|+..+|.+
T Consensus       159 ~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  238 (251)
T cd05041         159 IKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPEN  238 (251)
T ss_pred             eccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhh
Confidence            67999999888889999999999999999999 777775411                2234467889999999999999


Q ss_pred             CCCHHHHHHHHH
Q 042690          225 RPSLRIVALMLQ  236 (266)
Q Consensus       225 Rps~~~il~~l~  236 (266)
                      ||++.++++.|+
T Consensus       239 Rp~~~ell~~l~  250 (251)
T cd05041         239 RPSFSEIYNELQ  250 (251)
T ss_pred             CcCHHHHHHHhh
Confidence            999999999886

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.9e-33  Score=236.47  Aligned_cols=200  Identities=18%  Similarity=0.163  Sum_probs=159.5

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc---CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA---HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~---~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      ||+|+||+||+|.+. .++..+|+|++..                 ++...   +||||+++++++......++||||+.
T Consensus         1 lG~G~~g~Vy~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKK-DTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEEC-CCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCC
Confidence            799999999999975 6788999997641                 22222   69999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ........|
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~g  158 (330)
T cd05586          80 GGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTD-NKTTNTFCG  158 (330)
T ss_pred             CChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCC-CCCccCccC
Confidence            999999998665544      44556677788898888887     899999999999999998753221 122234568


Q ss_pred             CCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC----------------ccccchHHHHHHHhhhcCCC
Q 042690          161 TKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------PKTLEKPVMIAIQFVKEKPP  223 (266)
Q Consensus       161 ~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------~~~~~~~~~l~~~cl~~~p~  223 (266)
                      |..|+|||++.+. .++.++||||||+++|+|++|..||.....                ......+.+++.+||+.||.
T Consensus       159 t~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~  238 (330)
T cd05586         159 TTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQ  238 (330)
T ss_pred             CccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHH
Confidence            9999999988654 478999999999999999999999865221                12345677899999999999


Q ss_pred             CCCC----HHHHHH
Q 042690          224 LRPS----LRIVAL  233 (266)
Q Consensus       224 ~Rps----~~~il~  233 (266)
                      +||+    +.++++
T Consensus       239 ~R~~~~~~~~~ll~  252 (330)
T cd05586         239 HRLGAHRDAVELKE  252 (330)
T ss_pred             HCCCCCCCHHHHhc
Confidence            9984    555554

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=5.1e-32  Score=224.61  Aligned_cols=207  Identities=20%  Similarity=0.242  Sum_probs=161.6

Q ss_pred             eccCCCcceEEEEEEEcC-----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           30 KKPCGGSFSTVYTGVLAP-----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~-----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.||+|++|.||+|.+..     ..+..+++|.+.               ..++.++||||+++++++......+++|||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998741     123567877654               367788999999999999988899999999


Q ss_pred             CCCCCHHHHHhhcC-------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-----EEEEeecCccee
Q 042690           90 MHNRSISSLLYECL-------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-----TVETSDLGLAKL  146 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-----~~~l~Dfg~a~~  146 (266)
                      +++++|.+++....       .+.      +..++..++.++|..+++|+     ||+++.++     .++|+|||++..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            99999999997421       123      33445555677777777776     89999887     899999999976


Q ss_pred             ecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccc
Q 042690          147 LMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLE  208 (266)
Q Consensus       147 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~  208 (266)
                      ....... ......++..|+|||.+.+..++.++|+||||+++|+|+| |..||...                .+...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
T cd05044         161 IYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPD  240 (269)
T ss_pred             cccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCCccCCcccchH
Confidence            5322111 1122345678999999988889999999999999999998 88887542                1223446


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      .+.+++.+||+.+|.+||+++++++.|+
T Consensus       241 ~~~~li~~~l~~~p~~Rp~~~~i~~~l~  268 (269)
T cd05044         241 KIYQLMTNCWAQDPSERPTFDRIQEILQ  268 (269)
T ss_pred             HHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence            6789999999999999999999999886

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-32  Score=226.57  Aligned_cols=202  Identities=20%  Similarity=0.247  Sum_probs=156.8

Q ss_pred             eccCCCcceEEEEEEEcCC------CcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           30 KKPCGGSFSTVYTGVLAPG------DKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~------~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.||.|+||.||+|.++..      ....+++|...              .+++.++|||++++++++..+...++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            4689999999999987421      12346777654              266788999999999999998889999999


Q ss_pred             CCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE--------EEEeecCcceeecc
Q 042690           90 MHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT--------VETSDLGLAKLLMI  149 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~--------~~l~Dfg~a~~~~~  149 (266)
                      +.+|+|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.        ++++|||++.....
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~  160 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP  160 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC
Confidence            999999999975432 33      44556667788888888887     899987765        69999999865432


Q ss_pred             ccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCC-cccCC--------------CCccccchHHHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRC-VERQG--------------SDPKTLEKPVMI  213 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~-p~~~~--------------~~~~~~~~~~~l  213 (266)
                           .....++..|+|||.+.+. .++.++|+||||+++|+|++|.. |+...              .+......+.++
T Consensus       161 -----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (258)
T cd05078         161 -----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANL  235 (258)
T ss_pred             -----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHH
Confidence                 1224467889999988764 47889999999999999999954 54331              122233567889


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      +.+||+.+|.+||+++++++.|+
T Consensus       236 i~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         236 INQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             HHHHhccChhhCCCHHHHHHhcC
Confidence            99999999999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=239.82  Aligned_cols=170  Identities=19%  Similarity=0.286  Sum_probs=144.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------------HhhhcC-C-----CceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAH-H-----KNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------------~l~~~~-h-----~~iv~~~~~~~~~~~~~l   85 (266)
                      +|.+++.||+|+||.|.+|..+ .+++.||||+++.             +|..++ |     -|+|+++|++...++++|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~-~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDH-KTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEec-CCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            6899999999999999999976 7899999999982             555554 2     499999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCC--EEEEeecCcceeeccc
Q 042690           86 VYKFMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYF--TVETSDLGLAKLLMIN  150 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~--~~~l~Dfg~a~~~~~~  150 (266)
                      |+|.+.. ||.++++.+.-        ..+..++..++..++.+++||.     |||+.+.+  .+|++|||+|....  
T Consensus       266 VfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~--  342 (586)
T KOG0667|consen  266 VFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES--  342 (586)
T ss_pred             eehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccC--
Confidence            9999965 99999996543        2355677777777887787776     99998654  68999999998743  


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                        ...-..+.+..|.|||++.|.+|+.+.||||||||+.||++|.+.|++
T Consensus       343 --q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG  390 (586)
T KOG0667|consen  343 --QRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPG  390 (586)
T ss_pred             --CcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCC
Confidence              333367789999999999999999999999999999999999998887

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=4e-32  Score=223.58  Aligned_cols=208  Identities=22%  Similarity=0.303  Sum_probs=167.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ++.+|++.+.||+|+||.||++..   .+..+++|.+.            .+++.++|||++++++++..+ ..+++|||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~---~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~   79 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY---TGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMEL   79 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc---CCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEEC
Confidence            456899999999999999999875   66778888654            367788999999999998654 47899999


Q ss_pred             CCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +.+++|.+++.....  +.      +..++..++.++|..+++|+     |++++.++.++|+|||++......    ..
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~----~~  155 (254)
T cd05083          80 MSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG----VD  155 (254)
T ss_pred             CCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceecccc----CC
Confidence            999999999975432  23      34466677788888888776     899999999999999998764311    11


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~cl~  219 (266)
                      ....+..|+|||.+.+..++.++|+||||+++|+|++ |..||....                +...+..+.+++.+||+
T Consensus       156 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  235 (254)
T cd05083         156 NSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWE  235 (254)
T ss_pred             CCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcC
Confidence            2234567999999888889999999999999999998 888886521                22234567899999999


Q ss_pred             cCCCCCCCHHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~  237 (266)
                      .+|..||++++++..|+.
T Consensus       236 ~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         236 TEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             CChhhCcCHHHHHHHHcc
Confidence            999999999999998764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=7.8e-32  Score=224.30  Aligned_cols=213  Identities=20%  Similarity=0.214  Sum_probs=170.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++|.+.+.||+|+||.||+|..+.    .....+++|.+.               .+++.++||||+++++++......+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            578889999999999999999742    245668887653               3778889999999999998888899


Q ss_pred             EEEEcCCCCCHHHHHhhcC---------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           85 LVYKFMHNRSISSLLYECL---------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~---------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                      +||||+++++|.+++....         .++      +..++..++.++|..+++|+     |++++.++.++++|||++
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~  164 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLS  164 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccc
Confidence            9999999999999997544         333      33455566688888888877     899999999999999998


Q ss_pred             eeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-----------------CCccc
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-----------------SDPKT  206 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-----------------~~~~~  206 (266)
                      ...............++..|++||.+.+..++.++|+||||++++++++ |..||...                 .+...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (275)
T cd05046         165 KDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGKLELPVPEGC  244 (275)
T ss_pred             cccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCCcCCCCCCCC
Confidence            7543222222233455678999999888888899999999999999998 66677541                 12234


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ...+.+++.+||+.+|.+||++.++++.|.
T Consensus       245 ~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         245 PSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            467789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=7.1e-32  Score=221.99  Aligned_cols=209  Identities=23%  Similarity=0.314  Sum_probs=167.0

Q ss_pred             eeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .+.+.||.|+||.||++.+....   +..+++|.+.               ..++.++|+||+++++++.+.+..+++||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            46789999999999999986322   4788988776               26667899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++.....  +.      +..++..++..+|..+++|+     ||+++.++.++|+|||++...........
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  161 (258)
T smart00219       82 YMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKK  161 (258)
T ss_pred             ccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccccccc
Confidence            9999999999975433  33      44555566677887777776     89999999999999999987653322222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++|+||+|+++++|++ |..||...                .+......+.+++.+|+
T Consensus       162 ~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  241 (258)
T smart00219      162 KGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCW  241 (258)
T ss_pred             ccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHC
Confidence            12336788999999888788999999999999999998 67777541                12234567788999999


Q ss_pred             hcCCCCCCCHHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALML  235 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l  235 (266)
                      +.+|.+||++.++++.|
T Consensus       242 ~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      242 AEDPEDRPTFSELVEIL  258 (258)
T ss_pred             cCChhhCcCHHHHHhhC
Confidence            99999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-32  Score=231.08  Aligned_cols=210  Identities=17%  Similarity=0.187  Sum_probs=165.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------------------HhhhcCCCceeeee
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------------------VVHVAHHKNLVCLL   74 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------------------~l~~~~h~~iv~~~   74 (266)
                      +.+|.+.+.||+|.||.|-+|+.. .+++.||||++.+                            +|+++.|||||+++
T Consensus        96 lNqy~l~~eiG~G~yGkVkLar~~-~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   96 LNQYELIKEIGSGQYGKVKLARDE-VDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             hhheehhhhhcCCccceEEEEeec-CCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            447999999999999999999976 7899999998872                            88999999999999


Q ss_pred             eEEEeC--CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           75 GYHIEQ--ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        75 ~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      ++..+.  ..+|||+|||..|.+...-.....+.      +.+-+...+.++|..+++|+     |+|++.+|.+|++||
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDF  254 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDF  254 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeecc
Confidence            998764  47999999998876654332222133      33344444566666666665     999999999999999


Q ss_pred             Ccceeeccc----cccccccccCCCCcCCccccCCCC----CCcccchhhHHHHHHHHHhCCCcccC-------------
Q 042690          142 GLAKLLMIN----QTQTLTGMRETKGYLPPEWFRNMP----VTVKVDVYSFGVMLLEIISCRCVERQ-------------  200 (266)
Q Consensus       142 g~a~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~i~~~l~tg~~p~~~-------------  200 (266)
                      |.+......    .........||+.|+|||.+.++.    .+.+.||||+|+++|.|+.|+.||..             
T Consensus       255 GVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~  334 (576)
T KOG0585|consen  255 GVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVND  334 (576)
T ss_pred             ceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcC
Confidence            999865221    112223478999999999887632    35789999999999999999999987             


Q ss_pred             ----CCCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          201 ----GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       201 ----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                          ...++..+.+.+++.++|+-||..|.++.+|..
T Consensus       335 pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  335 PLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             cccCCCcccccHHHHHHHHHHhhcChhheeehhhhee
Confidence                223445678889999999999999999887753

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=6e-32  Score=225.20  Aligned_cols=201  Identities=20%  Similarity=0.265  Sum_probs=155.9

Q ss_pred             ccCCCcceEEEEEEEcC-----------------------CCcceeeeeeHH--------------HHhhhcCCCceeee
Q 042690           31 KPCGGSFSTVYTGVLAP-----------------------GDKTNIGVKKLD--------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~-----------------------~~~~~vaiK~~~--------------~~l~~~~h~~iv~~   73 (266)
                      .||+|+||.||+|.+..                       +....+++|.+.              .+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            68999999999998531                       223457788664              26778899999999


Q ss_pred             eeEEEeCCeEEEEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-------
Q 042690           74 LGYHIEQECRLLVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-------  134 (266)
Q Consensus        74 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-------  134 (266)
                      ++++..+...++||||+++++|..++... ..+.      +..++..++.++|..+++|+     ||+++.++       
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~  161 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSP  161 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccc
Confidence            99999999999999999999999998753 3333      44556666788888888887     89997643       


Q ss_pred             EEEEeecCcceeeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHH-hCCCcccCCC----------
Q 042690          135 TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEII-SCRCVERQGS----------  202 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~-tg~~p~~~~~----------  202 (266)
                      .++++|||++......     ....++..|+|||.+.+ ..++.++|+||||+++|+++ +|+.||....          
T Consensus       162 ~~kl~d~g~~~~~~~~-----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~  236 (274)
T cd05076         162 FIKLSDPGVSFTALSR-----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEK  236 (274)
T ss_pred             eeeecCCccccccccc-----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHh
Confidence            4799999987643211     22346788999998765 45789999999999999985 6888886422          


Q ss_pred             ----CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          203 ----DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       203 ----~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                          +......+.+++.+||+.+|.+||++.++++.|+
T Consensus       237 ~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         237 KHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             ccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence                1222356789999999999999999999998773

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=9.9e-32  Score=221.45  Aligned_cols=206  Identities=22%  Similarity=0.257  Sum_probs=163.8

Q ss_pred             eccCCCcceEEEEEEEcCCCc--ceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDK--TNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~--~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|++|.||+|.+....+  ..+++|.+.               ..++.++||||+++++.+.. ...+++|||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999999853233  358888754               36778899999999999888 889999999999


Q ss_pred             CCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--cccc
Q 042690           93 RSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--TLTG  157 (266)
Q Consensus        93 ~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--~~~~  157 (266)
                      ++|.+++.+..  .+.      +..++..++.++|..+++|+     |++++.++.++|+|||++.........  ....
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  159 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEH  159 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccC
Confidence            99999997654  233      33456666677888787777     899999999999999999876432211  1112


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-----------------CCccccchHHHHHHHhhh
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-----------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-----------------~~~~~~~~~~~l~~~cl~  219 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...                 .+...+..+.+++.+|++
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  239 (257)
T cd05040         160 LKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWA  239 (257)
T ss_pred             CCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCC
Confidence            446778999999988889999999999999999998 99988531                 122344677889999999


Q ss_pred             cCCCCCCCHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~  236 (266)
                      .+|.+||++.++++.|.
T Consensus       240 ~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         240 HNPADRPTFAALREFLP  256 (257)
T ss_pred             CCcccCCCHHHHHHHhc
Confidence            99999999999998774

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=5.3e-32  Score=231.07  Aligned_cols=205  Identities=17%  Similarity=0.117  Sum_probs=160.4

Q ss_pred             eeeccCCC--cceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           28 SLKKPCGG--SFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        28 ~~~~ig~G--~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +++.||+|  ++++||++..+ .++..||+|++.                .+++.++||||+++++++..++..++||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYK-PTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeec-ccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            46789998  67899999976 678899999775                266678999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-c--
Q 042690           90 MHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-Q--  153 (266)
Q Consensus        90 ~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~--  153 (266)
                      +++++|.+++...  ..++      +..++..++.++|..+++|+     ||+++.++.+++.||+.......... .  
T Consensus        81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~  160 (327)
T cd08227          81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRV  160 (327)
T ss_pred             cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccc
Confidence            9999999999643  2233      44556677788888888887     89999999999999986543221100 0  


Q ss_pred             ---ccccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          154 ---TLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       154 ---~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                         ......++..|+|||.+.+  ..++.++|||||||++|+|++|+.||.....                         
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (327)
T cd08227         161 VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEE  240 (327)
T ss_pred             cccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhh
Confidence               0112345678999998865  4588999999999999999999999863100                         


Q ss_pred             ------------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                          ......+.+++.+||+.||.+|||++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         241 LTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             cccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence                                                011235778999999999999999999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.6e-31  Score=219.83  Aligned_cols=206  Identities=17%  Similarity=0.281  Sum_probs=167.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|...+.||+|++|.||++... .++..+++|.+.                +.++.++|||++++++.+...+..++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRK-ADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVME   79 (256)
T ss_pred             CceEEEEecccCceEEEEEEEc-CCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEe
Confidence            4788999999999999999975 578888998653                36778899999999999998899999999


Q ss_pred             cCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+++++|.+++.....  ++      +..++..++.++|..++.|.     ||+++.+ +.++|+|||.+......  ..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~--~~  157 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK--SK  157 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCC--cc
Confidence            9999999999976432  22      33456666688888887777     8999855 56899999999875422  12


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl  218 (266)
                      .....++..|+|||.+.+..++.++|+||||+++|+|++|..||....                +......+.+++.+||
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  237 (256)
T cd08220         158 AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPDLRQLILSML  237 (256)
T ss_pred             ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHc
Confidence            223457889999999988888999999999999999999999886521                2224567889999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      +.+|.+||+++++++
T Consensus       238 ~~~p~~Rpt~~~ll~  252 (256)
T cd08220         238 NLDPSKRPQLSQIMA  252 (256)
T ss_pred             cCChhhCCCHHHHhh
Confidence            999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=5.4e-32  Score=226.12  Aligned_cols=210  Identities=16%  Similarity=0.195  Sum_probs=165.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEe------CC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIE------QE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~------~~   81 (266)
                      ..+.|.+.+.||.|+||.||+|.+. .++..+++|...             .+++.+ +|+|++++++++..      ..
T Consensus        14 ~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   92 (282)
T cd06636          14 PAGIFELVEVVGNGTYGQVYKGRHV-KTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDD   92 (282)
T ss_pred             hhhhhhhheeeccCCCeEEEEEEEc-CCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCC
Confidence            3467888899999999999999986 577889998653             245555 69999999999853      35


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ..+++|||+.+++|.+++.....  +.      +..++..++.++|..+++|+     ||++++++.++|+|||++....
T Consensus        93 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~  172 (282)
T cd06636          93 QLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD  172 (282)
T ss_pred             EEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhh
Confidence            68999999999999999975322  22      33456677788998888887     8999999999999999987643


Q ss_pred             cccccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------Cccc
Q 042690          149 INQTQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKT  206 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~  206 (266)
                      .. ........++..|+|||.+.     +..++.++|+||||+++|+|++|..||....                 ....
T Consensus       173 ~~-~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (282)
T cd06636         173 RT-VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKSKKW  251 (282)
T ss_pred             cc-ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCCccccc
Confidence            21 11223356788999999875     3457889999999999999999999986521                 1124


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ...+.+++.+||..||.+||++.++++
T Consensus       252 ~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         252 SKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            567889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.5e-32  Score=252.65  Aligned_cols=208  Identities=17%  Similarity=0.233  Sum_probs=162.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe--CCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE--QECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~--~~~~~   84 (266)
                      +..|.+++.||.|+||+||++.+. ..+..+++|.+.                .+++.++||||+++++++..  ...+|
T Consensus        12 l~~YeIl~kLG~GgFGtVYLAkdk-~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~ly   90 (1021)
T PTZ00266         12 LNEYEVIKKIGNGRFGEVFLVKHK-RTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLY   90 (1021)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEEC-CCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEE
Confidence            468999999999999999999986 567788888653                37888999999999998865  35689


Q ss_pred             EEEEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhc-------Ccccc-----ceeecC----------
Q 042690           85 LVYKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRT-------RALAC-----RILLHD----------  132 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~-------~~~h~-----nili~~----------  132 (266)
                      +||||+.+++|.+++...    ..+      .+..++..++.++|..       +++|+     |||++.          
T Consensus        91 IVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~  170 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITA  170 (1021)
T ss_pred             EEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccc
Confidence            999999999999998752    223      3445566666777653       25555     899864          


Q ss_pred             -------CCEEEEeecCcceeeccccccccccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCC-
Q 042690          133 -------YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGS-  202 (266)
Q Consensus       133 -------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-  202 (266)
                             .+.++|+|||++......  .......+|+.|+|||++.+  ..++.++|||||||++|+|+||..||.... 
T Consensus       171 ~~~n~ng~~iVKLsDFGlAr~l~~~--s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~  248 (1021)
T PTZ00266        171 QANNLNGRPIAKIGDFGLSKNIGIE--SMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANN  248 (1021)
T ss_pred             cccccCCCCceEEccCCcccccccc--ccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCc
Confidence                   345899999999865321  12234568999999998854  347889999999999999999999996521 


Q ss_pred             ---------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ---------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ---------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     .......+.+++..||..+|.+||++.+++.
T Consensus       249 ~~qli~~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        249 FSQLISELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             HHHHHHHHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence                           1123457889999999999999999999984

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.1e-31  Score=227.91  Aligned_cols=204  Identities=16%  Similarity=0.228  Sum_probs=157.5

Q ss_pred             eeccCCCcceEEEEEEEcC-CCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEe--CCeEEEEEEcCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIE--QECRLLVYKFMHNR   93 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~--~~~~~lv~e~~~~~   93 (266)
                      .++||+|+||.||+|.++. .++..+|+|.+.            .+++.++||||+++++++..  +...+++|||+.+ 
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH-   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC-
Confidence            4689999999999999753 356789998754            37889999999999999864  4568899999965 


Q ss_pred             CHHHHHhhcC---------C------CCHHHHHHHHHHHhhhcCcccc-----ceee----cCCCEEEEeecCcceeecc
Q 042690           94 SISSLLYECL---------R------PTWQQRMQDCIRDCWRTRALAC-----RILL----HDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        94 ~L~~~l~~~~---------~------~~~~~~l~~~~~~~~~~~~~h~-----nili----~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +|.+++....         .      ..+..++..++.++|..+++|+     ||++    +.++.+||+|||+++....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCC
Confidence            8888876321         1      2345677778899998888887     8999    4567899999999987542


Q ss_pred             ccc--cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc----------------------
Q 042690          150 NQT--QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP----------------------  204 (266)
Q Consensus       150 ~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~----------------------  204 (266)
                      ...  .......+|+.|+|||.+.+. .++.++|+||+||++|+|++|++||......                      
T Consensus       165 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (317)
T cd07868         165 PLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFP  244 (317)
T ss_pred             CCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCC
Confidence            211  122345678999999988764 5789999999999999999999988531100                      


Q ss_pred             ----------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ----------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ----------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                              .....+.+++.+||+.||.+|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~  313 (317)
T cd07868         245 ADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ  313 (317)
T ss_pred             ChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhc
Confidence                                                    00123567999999999999999999885

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=9.6e-32  Score=226.11  Aligned_cols=210  Identities=17%  Similarity=0.184  Sum_probs=170.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..+|.+.+.||+|+||.||++... .++..+++|.+.              .+++.++|||++++++.+...+..++|+|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDV-ATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVME   96 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEc-CCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEe
Confidence            457889999999999999999865 567789998764              26778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           89 FMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      |+++++|.+++.+..-     ..+..++..++..+|..++.|+     |++++.++.++|+|||++....... ......
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~-~~~~~~  175 (293)
T cd06647          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTM  175 (293)
T ss_pred             cCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccccc-cccccc
Confidence            9999999999975321     2334455566788888888887     8999999999999999987654222 222334


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------ccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------PKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~~~~~~~~~l~~~cl~~  220 (266)
                      .+++.|++||.+.+..++.++|+||||+++|++++|+.||.....                  ......+.+++.+||..
T Consensus       176 ~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  255 (293)
T cd06647         176 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEM  255 (293)
T ss_pred             cCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccC
Confidence            578889999998888889999999999999999999999864211                  11234577899999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      +|.+||++++++..
T Consensus       256 ~p~~Rp~~~~il~h  269 (293)
T cd06647         256 DVEKRGSAKELLQH  269 (293)
T ss_pred             ChhhCcCHHHHhcC
Confidence            99999999999855

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=1e-31  Score=222.22  Aligned_cols=208  Identities=15%  Similarity=0.218  Sum_probs=169.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++.+.||.|++|.||+|.+. .++..+++|.+.               +.++.++|+|++++++.+..+...+++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICL-PNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEc-CCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            6888999999999999999975 467788888753               256788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--
Q 042690           90 MHNRSISSLLYECL---RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        90 ~~~~~L~~~l~~~~---~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                      +++++|.+++....   .+      .+..++..++..+|..++.|+     ||++++++.++|+|||++.........  
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~  160 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTR  160 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccc
Confidence            99999999997532   22      344567777788888888877     899999999999999998765432221  


Q ss_pred             -ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------ccccchH
Q 042690          154 -TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------PKTLEKP  210 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------~~~~~~~  210 (266)
                       ......++..|++||.+... .++.++|+||||+++|+|++|+.||.....                     ...+..+
T Consensus       161 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (267)
T cd06610         161 KVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSF  240 (267)
T ss_pred             cccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHH
Confidence             11234578899999988766 688999999999999999999999865221                     1234567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||..||.+||++.++++
T Consensus       241 ~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         241 RKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             HHHHHHHcCCChhhCcCHHHHhh
Confidence            89999999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.3e-32  Score=227.16  Aligned_cols=206  Identities=16%  Similarity=0.214  Sum_probs=163.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++++.||+|+||.||++.+. ..+..+++|.+.               .+++.++||||+++++.+..++..++||||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHR-PTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEc-CCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            6788999999999999999985 577889998543               367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc---CCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           90 MHNRSISSLLYEC---LRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        90 ~~~~~L~~~l~~~---~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      +++++|.+++...   ..++      +..++..++.++|+ ++++|+     ||+++.++.++|+|||++......   .
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~---~  157 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS---L  157 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCC---c
Confidence            9999999998763   1333      33445555566664 466666     899999999999999998765321   2


Q ss_pred             cccccCCCCcCCccccCCC------CCCcccchhhHHHHHHHHHhCCCcccCCC-------------------Cccccch
Q 042690          155 LTGMRETKGYLPPEWFRNM------PVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEK  209 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~  209 (266)
                      .....++..|+|||.+.+.      .++.++|+||||+++|+|++|..||....                   ++.....
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd06622         158 AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSGYSDD  237 (286)
T ss_pred             cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCCCCCcccCHH
Confidence            2234567899999987543      34789999999999999999999985411                   2234456


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +.+++.+||..+|.+||+++++++.
T Consensus       238 ~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         238 AQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             HHHHHHHHcccCcccCCCHHHHhcC
Confidence            7789999999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-32  Score=234.54  Aligned_cols=205  Identities=17%  Similarity=0.212  Sum_probs=173.3

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |-+.+.||+|.|..|-+|++. .+|..||+|++.+                .|+.++|||||++|++..++..+|||+|+
T Consensus        20 YDLekTlG~GHFAVVKLArHV-FTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   20 YDLEKTLGRGHFAVVKLARHV-FTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             ehhhhhhcCCceehhhhhhhh-cccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEe
Confidence            667889999999999999976 8999999999873                77788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ce-eecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RI-LLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----ni-li~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      -.+|+|++||-.+..       ..+..++..++.+||...++|+     |+ |+..-|-+||.|||++..+.  .+....
T Consensus        99 GD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~--PG~kL~  176 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQ--PGKKLT  176 (864)
T ss_pred             cCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCC--Ccchhh
Confidence            999999999975433       3455667777788876666665     64 55677999999999998775  345556


Q ss_pred             cccCCCCcCCccccCCCCCC-cccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhc
Q 042690          157 GMRETKGYLPPEWFRNMPVT-VKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ..+|+..|-|||.+.|..|+ ++.||||||+|+|-|++|++||..-.               +.....+..++|..||..
T Consensus       177 TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvR  256 (864)
T KOG4717|consen  177 TSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVR  256 (864)
T ss_pred             cccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCchhhhHHHHHHHHHHHhc
Confidence            68899999999999998875 67999999999999999999998722               344556777899999999


Q ss_pred             CCCCCCCHHHHHH
Q 042690          221 KPPLRPSLRIVAL  233 (266)
Q Consensus       221 ~p~~Rps~~~il~  233 (266)
                      ||.+|.+.++|..
T Consensus       257 dPkkRAslEeI~s  269 (864)
T KOG4717|consen  257 DPKKRASLEEIVS  269 (864)
T ss_pred             CchhhccHHHHhc
Confidence            9999999999974

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=1.6e-31  Score=222.89  Aligned_cols=207  Identities=15%  Similarity=0.213  Sum_probs=166.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      -|...+.||+|+||.||+|.+. .++..+|+|...               ..++.++||||+++++++..+...++||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDN-RTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEEC-CCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            4667889999999999999875 567889998653               266788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      +.+++|.+++... .++      +..++..++..+|..++.|.     |++++.++.++++|||++...... .......
T Consensus        84 ~~~~~l~~~i~~~-~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~-~~~~~~~  161 (277)
T cd06641          84 LGGGSALDLLEPG-PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT-QIKRNTF  161 (277)
T ss_pred             CCCCcHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccc-hhhhccc
Confidence            9999999998643 333      33445555677777777776     899999999999999998765422 1122234


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhhcCC
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      .++..|++||.+.+..++.++|+||||+++|+|++|..|+....                .......+.+++.+||..+|
T Consensus       162 ~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p  241 (277)
T cd06641         162 VGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEP  241 (277)
T ss_pred             cCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCCh
Confidence            57888999999888888899999999999999999999986421                11234567889999999999


Q ss_pred             CCCCCHHHHHHH
Q 042690          223 PLRPSLRIVALM  234 (266)
Q Consensus       223 ~~Rps~~~il~~  234 (266)
                      .+||++.++++.
T Consensus       242 ~~Rp~~~~~l~~  253 (277)
T cd06641         242 SFRPTAKELLKH  253 (277)
T ss_pred             hhCcCHHHHHhC
Confidence            999999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.9e-31  Score=221.05  Aligned_cols=207  Identities=16%  Similarity=0.167  Sum_probs=162.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEe--CCeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIE--QECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~--~~~~   83 (266)
                      .|+..+.||+|++|.||+|... .++..+++|++.                   .+++.++||||+++++++..  ....
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDV-DTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CccccceecCCCCEEEEEEEEc-CCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            5778899999999999999975 567888888652                   27778899999999998865  3568


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-  151 (266)
                      +++|||+++++|.+++.....++      +..++..++..+|..+++|+     ||+++.++.++|+|||++....... 
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~  161 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICM  161 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccc
Confidence            89999999999999997655433      44566667788888888877     8999999999999999987643211 


Q ss_pred             -ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHH
Q 042690          152 -TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMI  213 (266)
Q Consensus       152 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l  213 (266)
                       ........++..|+|||.+.+..++.++|+||+|+++|+|++|+.||....                 +......+..+
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  241 (266)
T cd06651         162 SGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHARDF  241 (266)
T ss_pred             cCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCCCCCCCchhcCHHHHHH
Confidence             111123457889999999988889999999999999999999999986411                 11123334455


Q ss_pred             HHHhhhcCCCCCCCHHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~  233 (266)
                      + +||..+|.+||+++++++
T Consensus       242 i-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         242 L-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             H-HHhcCChhhCcCHHHHhc
Confidence            5 788899999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=6.8e-32  Score=225.41  Aligned_cols=215  Identities=20%  Similarity=0.274  Sum_probs=170.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC---CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe--CCeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE--QECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~---~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~--~~~~   83 (266)
                      .+|++.+.||+|+||.||++.+..   ..+..+|+|.+.               +.++.++||||+++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            467888999999999999999742   356788998664               36778899999999999877  5578


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      +++|||+++++|.+++.... .+      .+..++..++..+|..+++|+     ||+++.++.++|+|||.+.......
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  163 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK  163 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCC
Confidence            99999999999999997544 23      344556666788888888877     8999999999999999998764222


Q ss_pred             ccc--cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------
Q 042690          152 TQT--LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------  203 (266)
Q Consensus       152 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------  203 (266)
                      ...  .....++..|++||.+.+..++.++|+||||+++++|+||..|+.....                          
T Consensus       164 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (284)
T cd05038         164 DYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGE  243 (284)
T ss_pred             cceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCC
Confidence            211  1123345679999998888899999999999999999999988754211                          


Q ss_pred             -----ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          204 -----PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       204 -----~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                           ......+.+++.+||+.+|.+||++.+++++|+.+
T Consensus       244 ~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         244 RLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             cCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence                 11234677899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.7e-31  Score=221.18  Aligned_cols=208  Identities=17%  Similarity=0.170  Sum_probs=165.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeC--Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQ--EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~--~~   82 (266)
                      .+|.+.+.||+|+||.||++.+. .++..|++|.+.                   .+++.++||||+++++++.+.  ..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~-~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   80 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDA-DTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERT   80 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEc-CCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCce
Confidence            46888999999999999999975 678889998642                   367788999999999988663  46


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++++|||+++++|.+++.....++      +..++..++..+|..+++|.     ||+++.++.++|+|||.+.......
T Consensus        81 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~  160 (265)
T cd06652          81 LSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTIC  160 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCcccccccccc
Confidence            789999999999999997655433      44556667788888887776     8999999999999999987643211


Q ss_pred             c--cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHH
Q 042690          152 T--QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVM  212 (266)
Q Consensus       152 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~  212 (266)
                      .  .......++..|+|||++.+..++.++|+||||+++|+|++|+.||...                 .+......+.+
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (265)
T cd06652         161 LSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPTNPVLPPHVSDHCRD  240 (265)
T ss_pred             ccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCCCCCCCchhhCHHHHH
Confidence            1  1122345788999999998888899999999999999999999998641                 12223345667


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+|+. +|.+||+++++++
T Consensus       241 ~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         241 FLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             HHHHHhc-ChhhCCCHHHHhc
Confidence            8999985 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.98  E-value=1.1e-31  Score=222.71  Aligned_cols=210  Identities=20%  Similarity=0.258  Sum_probs=166.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------------HHh-hhcCCCceeeeeeEEEe
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------------KVV-HVAHHKNLVCLLGYHIE   79 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------------~~l-~~~~h~~iv~~~~~~~~   79 (266)
                      .|++.+.||+|+||.||++.+....+..+++|.+.                        .++ +.++||||+++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36778899999999999999874467788888642                        122 34789999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCc
Q 042690           80 QECRLLVYKFMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      ++..+++|||+++++|.+++...    ..+.      +..++..++..+|. .++.|+     ||+++.++.++|+|||.
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~  160 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGL  160 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccc
Confidence            99999999999999999987531    2233      23345555566664 455565     89999999999999999


Q ss_pred             ceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------Cc-cc
Q 042690          144 AKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DP-KT  206 (266)
Q Consensus       144 a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~-~~  206 (266)
                      +.......  ......++..|++||.+.+..++.++|+||||+++|+|++|+.||....                .. ..
T Consensus       161 ~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (269)
T cd08528         161 AKQKQPES--KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPLPEGMY  238 (269)
T ss_pred             eeeccccc--ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcCCcccC
Confidence            98754322  3334567889999999988888999999999999999999999986521                11 23


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ...+.+++.+||+.||.+||++.++..+++
T Consensus       239 ~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         239 SEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             CHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence            467889999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.98  E-value=2.4e-31  Score=220.99  Aligned_cols=208  Identities=18%  Similarity=0.204  Sum_probs=167.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------------HHhhhcCCCceeeeeeEEEeC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------------KVVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------------~~l~~~~h~~iv~~~~~~~~~   80 (266)
                      +|.+.+.||+|++|.||+|... .++..+++|.+.                        ..++.++|||++++++++...
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~   80 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNV-TTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTE   80 (272)
T ss_pred             ceeecceecccCceEEEEEeec-CCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccC
Confidence            4778899999999999999975 567889998642                        257788999999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +..++||||+.+++|.+++.....+..      ..++..++..+|..+++|+     ||+++.++.++|+|||++.....
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~  160 (272)
T cd06629          81 EYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDD  160 (272)
T ss_pred             CceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccc
Confidence            999999999999999999987655443      3456666688888888777     89999999999999999976432


Q ss_pred             cccc-ccccccCCCCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccCCC---------------------Ccc
Q 042690          150 NQTQ-TLTGMRETKGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQGS---------------------DPK  205 (266)
Q Consensus       150 ~~~~-~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~~~  205 (266)
                      .... ......++..|+|||.+.+..  ++.++|+||||+++|++++|..||....                     .+.
T Consensus       161 ~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (272)
T cd06629         161 IYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMN  240 (272)
T ss_pred             cccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCcccccc
Confidence            2111 122345788999999877544  7889999999999999999999985411                     012


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ....+.+++.+||..+|.+||+++++++
T Consensus       241 ~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         241 LSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             CCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            2456788999999999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=7.7e-32  Score=241.95  Aligned_cols=210  Identities=14%  Similarity=0.145  Sum_probs=160.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeee------------------e-------------eHHHHhhhcCCCcee
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGV------------------K-------------KLDKVVHVAHHKNLV   71 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vai------------------K-------------~~~~~l~~~~h~~iv   71 (266)
                      ..+|.+++.||+|+||+||++.++...+...+.                  |             .+..+++.++||||+
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            357999999999999999998764222221111                  1             122478889999999


Q ss_pred             eeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcC-----C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCE
Q 042690           72 CLLGYHIEQECRLLVYKFMHNRSISSLLYECL-----R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFT  135 (266)
Q Consensus        72 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-----~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~  135 (266)
                      ++++++...+..+++++++.+ +|.+++....     .      ..+..++..++.++|.++++|+     |||++.++.
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~  305 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGK  305 (501)
T ss_pred             cEeEEEEECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC
Confidence            999999999999999999965 7777765321     1      1255677778899999999888     899999999


Q ss_pred             EEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------
Q 042690          136 VETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------  203 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------  203 (266)
                      ++|+|||++...............|+..|+|||++.+..++.++|||||||++|+|++|..++.....            
T Consensus       306 vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~  385 (501)
T PHA03210        306 IVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIID  385 (501)
T ss_pred             EEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHH
Confidence            99999999987643333333345789999999999988899999999999999999998864322110            


Q ss_pred             ---------c-----------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------P-----------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------~-----------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                               +                             .....+.+++.+||+.||.+||++.|++.
T Consensus       386 ~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        386 SLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             hcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence                     0                             01123344688999999999999999985

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.98  E-value=1.5e-31  Score=221.93  Aligned_cols=206  Identities=21%  Similarity=0.173  Sum_probs=156.1

Q ss_pred             eccCCCcceEEEEEEEcC-CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      ++||+|+||.||+|.... .....+++|.+.               ..++.++||||+++++.+......++||||+.++
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCC
Confidence            468999999999997532 234567777543               2566789999999999999889999999999999


Q ss_pred             CHHHHHhhcCC-----------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-ccc
Q 042690           94 SISSLLYECLR-----------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-TLT  156 (266)
Q Consensus        94 ~L~~~l~~~~~-----------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~  156 (266)
                      +|.+++.....           ..+..++..++.++|..+++|+     |++++.++.++|+|||++......... ...
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~  160 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKD  160 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccC
Confidence            99999975432           2344566677788898888887     899999999999999998653221111 112


Q ss_pred             cccCCCCcCCccccC-------CCCCCcccchhhHHHHHHHHHh-CCCcccCCC---------------------Ccccc
Q 042690          157 GMRETKGYLPPEWFR-------NMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS---------------------DPKTL  207 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~---------------------~~~~~  207 (266)
                      ...++..|+|||.+.       ...++.++||||||+++|+|++ |..||....                     .....
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (269)
T cd05042         161 CHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYS  240 (269)
T ss_pred             CCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCC
Confidence            233567799999764       2356789999999999999999 666775421                     11233


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ..+.+++..|+ .||++||++++|++.|.
T Consensus       241 ~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         241 DRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             HHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            45567888888 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.98  E-value=1.3e-31  Score=220.59  Aligned_cols=205  Identities=18%  Similarity=0.248  Sum_probs=166.8

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      |...+.||+|++|.||+|... .++..+++|.+.                   .+++.++|+||+++++++......+++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNL-DDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             ccccceeeecCCceEEEEEEc-CCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            556788999999999999975 467788888542                   366788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++++|.+++.....+.      +..++..++..+|..++.|.     ||+++.++.++|+|||.+.......  ..
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~--~~  158 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS--FA  158 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc--cc
Confidence            99999999999998665443      34456666788887787777     8999999999999999988754322  22


Q ss_pred             ccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHHHh
Q 042690          156 TGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~~c  217 (266)
                      ....++..|++||.+.... ++.++|+||||+++|+|++|+.||....                 ++.....+.+++.+|
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  238 (258)
T cd06632         159 KSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKC  238 (258)
T ss_pred             cccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHH
Confidence            3455788999999887665 8899999999999999999999985521                 122345677899999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.+|.+||++++++.
T Consensus       239 l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         239 LQRDPSLRPTAAELLE  254 (258)
T ss_pred             hhcCcccCcCHHHHhc
Confidence            9999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.98  E-value=6.6e-32  Score=231.94  Aligned_cols=206  Identities=16%  Similarity=0.190  Sum_probs=164.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      ...|.+.+.||.|+||.||+|... .++..||+|++.                .+++.++||||+++++++...      
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDT-RLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEEC-CCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            467889999999999999999975 577889999753                377888999999999987543      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ...+++|+++ +++|.+++....-     ..+..++..++.++|.++++|+     ||+++.++.++|+|||++..... 
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~-  170 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD-  170 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCC-
Confidence            3478999988 6799988764211     2355667777788888888887     89999999999999999986532 


Q ss_pred             cccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCCc-------------------------
Q 042690          151 QTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDP-------------------------  204 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-------------------------  204 (266)
                         ......++..|+|||.+.+ ..++.++|||||||++|+|++|+.||......                         
T Consensus       171 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (343)
T cd07878         171 ---EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEH  247 (343)
T ss_pred             ---CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhh
Confidence               2234567999999998876 46888999999999999999999998642100                         


Q ss_pred             ---------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 ---------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ---------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                           .....+.+++.+|+..||.+|||+.++++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         248 ARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                                 012235689999999999999999999854

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.98  E-value=1.1e-31  Score=224.10  Aligned_cols=205  Identities=16%  Similarity=0.166  Sum_probs=162.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|+||.||++.+. .++..||+|++..                .++..+|||++++++++..++..+++||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHV-PTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEc-CCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            6888999999999999999976 6788999997641                3556789999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           89 FMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |++ ++|.+++...    ..++      +..++..++.++|.+ +++|+     ||+++.++.++|+|||++......  
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~--  157 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS--  157 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccc--
Confidence            997 5888887642    1232      334555666777765 67776     899999999999999999865321  


Q ss_pred             cccccccCCCCcCCccccCC----CCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchH
Q 042690          153 QTLTGMRETKGYLPPEWFRN----MPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKP  210 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~  210 (266)
                      .......++..|+|||.+.+    ..++.++|+||||+++|+|++|+.||....                  ....+..+
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  237 (283)
T cd06617         158 VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQLPAEKFSPEF  237 (283)
T ss_pred             cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCCCccccCHHH
Confidence            12223457889999998764    346889999999999999999999985311                  11234678


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||..+|.+||++++++.
T Consensus       238 ~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         238 QDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             HHHHHHHccCChhhCcCHHHHhc
Confidence            89999999999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.98  E-value=3e-31  Score=222.63  Aligned_cols=210  Identities=20%  Similarity=0.260  Sum_probs=164.3

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      |....|.+.+.||+|+||.||+|... .++..+++|.+.               .+++.++|+||+++++++..+...++
T Consensus         2 ~~~~~y~~~~~ig~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   80 (291)
T cd07870           2 GAATSYLNLEKLGEGSYATVYKGISR-INGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTF   80 (291)
T ss_pred             CccceeEEEEEEEecCCEEEEEEEEc-CCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEE
Confidence            44578999999999999999999975 567789998753               36778899999999999999889999


Q ss_pred             EEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+. ++|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||+++..... ..
T Consensus        81 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-~~  158 (291)
T cd07870          81 VFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIP-SQ  158 (291)
T ss_pred             EEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCC-CC
Confidence            999996 58877765432 22      234556666688888888887     899999999999999998764321 11


Q ss_pred             ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc----------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP----------------------------  204 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~----------------------------  204 (266)
                      ......++..|+|||.+.+. .++.++|+||||+++|+|++|..||......                            
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T cd07870         159 TYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNY  238 (291)
T ss_pred             CCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccc
Confidence            22234568899999988653 4788999999999999999999988531110                            


Q ss_pred             --------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 --------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 --------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                          .....+.+++.+|+..||.+|||+.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         239 KPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             cchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence                                01235668999999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.98  E-value=1.4e-31  Score=221.56  Aligned_cols=201  Identities=17%  Similarity=0.244  Sum_probs=156.5

Q ss_pred             eccCCCcceEEEEEEEcCC-----------CcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           30 KKPCGGSFSTVYTGVLAPG-----------DKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~-----------~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +.||+|+||.||+|.+...           ....+++|.+.              .+++.++||||+++++++..+...+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            4689999999999986421           22347788643              2667889999999999999888899


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCE-------EEEeecCcce
Q 042690           85 LVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFT-------VETSDLGLAK  145 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~-------~~l~Dfg~a~  145 (266)
                      ++|||+.+++|..++.... .+      .+..++..++.++|..+++|+     ||+++.++.       ++++|||++.
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~  160 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI  160 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence            9999999999999887532 33      344566677788888888877     899987664       8999999987


Q ss_pred             eeccccccccccccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHH-hCCCcccCCC--------------Cccccch
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEII-SCRCVERQGS--------------DPKTLEK  209 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~-tg~~p~~~~~--------------~~~~~~~  209 (266)
                      ....     .....++..|+|||.+. +..++.++||||||+++|+|+ +|..|+....              .......
T Consensus       161 ~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (262)
T cd05077         161 TVLS-----RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKERFYEGQCMLVTPSCKE  235 (262)
T ss_pred             cccC-----cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHhcCccCCCCChHH
Confidence            5432     12345678899999876 456889999999999999998 5777775421              1122356


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVALML  235 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~~l  235 (266)
                      +.+++.+||+.||.+||++.+|++.+
T Consensus       236 ~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         236 LADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            77899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.98  E-value=4.3e-31  Score=219.11  Aligned_cols=203  Identities=17%  Similarity=0.197  Sum_probs=162.6

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ...||+|+||.||+|.+. .++..+++|...              .+++.++|+||+++++++..++..++++||+.+++
T Consensus        13 ~~~lg~g~~g~v~~~~~~-~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   91 (268)
T cd06624          13 RVVLGKGTYGIVYAARDL-STQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGS   91 (268)
T ss_pred             eEEEecCCceEEEEeEec-CCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCC
Confidence            348999999999999975 567788998654              37778899999999999999999999999999999


Q ss_pred             HHHHHhhc-CCC--------CHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeecccccccccccc
Q 042690           95 ISSLLYEC-LRP--------TWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        95 L~~~l~~~-~~~--------~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |.+++... ..+        .+..++..++.++|..+++|+     ||+++. ++.++|+|||.+....... .......
T Consensus        92 L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~  170 (268)
T cd06624          92 LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGIN-PCTETFT  170 (268)
T ss_pred             HHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCC-CccccCC
Confidence            99999754 222        244567777788888888887     899976 6799999999987653221 2222345


Q ss_pred             CCCCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhh
Q 042690          160 ETKGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~  219 (266)
                      ++..|+|||.+.+..  ++.++|+||||+++|+|++|..|+....                  +......+.+++.+||+
T Consensus       171 ~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  250 (268)
T cd06624         171 GTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFE  250 (268)
T ss_pred             CCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcC
Confidence            788999999876543  7889999999999999999999986411                  12234567789999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .+|.+||++.++++
T Consensus       251 ~~p~~Rpt~~~ll~  264 (268)
T cd06624         251 PDPDKRASAHDLLQ  264 (268)
T ss_pred             CCchhCCCHHHHHh
Confidence            99999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.98  E-value=3.8e-31  Score=222.36  Aligned_cols=208  Identities=20%  Similarity=0.266  Sum_probs=165.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +.+|.+.+.||+|++|.||+|.+. .+++.+++|.+.                ++++.++||||+++++++.+....++|
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDR-VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEec-CCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEE
Confidence            357899999999999999999975 577889999764                367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCC--------CHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeeccccc
Q 042690           87 YKFMHNRSISSLLYECLRP--------TWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |||+.+ +|.+++......        .+..++..++.++|..+++|+     ||+++. ++.++|+|||++...... .
T Consensus        80 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~-~  157 (294)
T PLN00009         80 FEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-V  157 (294)
T ss_pred             Eecccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCC-c
Confidence            999964 888887643322        244567777788888888887     899985 567999999999764321 1


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                      .......++..|+|||.+.+ ..++.++|+||+|+++|+|+||..||....                             
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (294)
T PLN00009        158 RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDY  237 (294)
T ss_pred             cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhh
Confidence            22233456889999998765 457889999999999999999999885321                             


Q ss_pred             ---------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ---------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ---------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     .+.....+.+++.+|++.+|.+||++.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        238 KSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             hhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                           1223456778999999999999999999986

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.98  E-value=1.4e-31  Score=223.76  Aligned_cols=206  Identities=20%  Similarity=0.298  Sum_probs=163.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .|.+.+.||.|++|.||+|... .++..+++|++.                +.++.++||||+++++++.+....++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   79 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNK-LTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   79 (284)
T ss_pred             CceeeeeecCCCceEEEEEEEC-CCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEee
Confidence            3778899999999999999975 567889998664                36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+. ++|.+++....  .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ....
T Consensus        80 ~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~-~~~~  157 (284)
T cd07860          80 FLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP-VRTY  157 (284)
T ss_pred             ccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccC-cccc
Confidence            996 58999886532  233      34556677788888888887     899999999999999998764321 1122


Q ss_pred             ccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------------
Q 042690          156 TGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------------  203 (266)
                      ....++..|+|||.+.+.. ++.++|+||||+++|+|+||+.||..+..                               
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07860         158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPS  237 (284)
T ss_pred             ccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhh
Confidence            2344678899999876544 58889999999999999999998854221                               


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+||+.||.+||+++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         238 FPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             cccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence                         112345567999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.98  E-value=2.1e-31  Score=220.77  Aligned_cols=208  Identities=17%  Similarity=0.223  Sum_probs=168.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +|...+.||+|++|.||++... .++..+++|.+.                    ..++.++|+||+++++++...+..+
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~-~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   79 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDV-KTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFN   79 (268)
T ss_pred             CccccceecCcCceEEEEEEEc-CCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEE
Confidence            3667789999999999999875 677888888663                    2666789999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++.+...+      .+..++..++..+|..+++|.     ||+++.++ .++|+|||.+........
T Consensus        80 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~  159 (268)
T cd06630          80 LFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGT  159 (268)
T ss_pred             EEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccc
Confidence            999999999999999765543      355677777788998888887     79998775 699999999876543211


Q ss_pred             c---ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------------Cccccch
Q 042690          153 Q---TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------DPKTLEK  209 (266)
Q Consensus       153 ~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------~~~~~~~  209 (266)
                      .   ......++..|+|||.+.+..++.++|+||+|+++++|++|..||....                    +......
T Consensus       160 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (268)
T cd06630         160 GAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTAPSIPEHLSPG  239 (268)
T ss_pred             cCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccCCCCCCchhhCHH
Confidence            1   1112457889999999888888999999999999999999999986422                    1123456


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+++.+|+..+|.+||++.++++
T Consensus       240 ~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         240 LRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             HHHHHHHHcCCCcccCcCHHHHhc
Confidence            778999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.98  E-value=2.4e-31  Score=225.80  Aligned_cols=204  Identities=16%  Similarity=0.233  Sum_probs=155.8

Q ss_pred             eeccCCCcceEEEEEEEcC-CCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEe--CCeEEEEEEcCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIE--QECRLLVYKFMHNR   93 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~--~~~~~lv~e~~~~~   93 (266)
                      ..+||+|+||.||+|..+. .++..+|+|.+.            .+++.++||||+++++++..  +...++||||+.+ 
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-
Confidence            4689999999999999753 356788988654            47888999999999999854  4578999999975 


Q ss_pred             CHHHHHhhcC---------CC------CHHHHHHHHHHHhhhcCcccc-----ceee----cCCCEEEEeecCcceeecc
Q 042690           94 SISSLLYECL---------RP------TWQQRMQDCIRDCWRTRALAC-----RILL----HDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        94 ~L~~~l~~~~---------~~------~~~~~l~~~~~~~~~~~~~h~-----nili----~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +|.+++....         .+      .+..++..++.++|..+++|+     ||++    +.++.++|+|||+++....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence            8888775221         12      344567777888888888887     8999    4667999999999987543


Q ss_pred             ccc--cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc----------------------
Q 042690          150 NQT--QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP----------------------  204 (266)
Q Consensus       150 ~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~----------------------  204 (266)
                      ...  .......+|..|+|||.+.+. .++.++|||||||++|+|+||++||......                      
T Consensus       165 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (317)
T cd07867         165 PLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFP  244 (317)
T ss_pred             CcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCC
Confidence            221  122335678999999988764 4789999999999999999999988531100                      


Q ss_pred             ----------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ----------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ----------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                              .....+.+++.+||+.||.+|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~  313 (317)
T cd07867         245 ADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQ  313 (317)
T ss_pred             ChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhc
Confidence                                                    01123556899999999999999999885

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.98  E-value=8.8e-32  Score=222.62  Aligned_cols=206  Identities=17%  Similarity=0.201  Sum_probs=167.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|...+.||+|++|.||++.++ .+++.+++|.+.               +.++.++||||+++++.+...+..+++|||
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHR-PTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEc-CCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            5677889999999999999985 567888888654               256788899999999999999999999999


Q ss_pred             CCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +.+++|.+++... ..+      .+..++..++..+|. .+++|+     ||+++.++.++|+|||.+.........   
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~---  157 (265)
T cd06605          81 MDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAK---  157 (265)
T ss_pred             cCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhh---
Confidence            9999999999865 332      344556667788888 777776     899999999999999998765322111   


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------Ccc-ccchHHHHH
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------DPK-TLEKPVMIA  214 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~~~-~~~~~~~l~  214 (266)
                      ...++..|++||.+.+..++.++|+||||+++|+|++|..|+....                     +.. ....+.+++
T Consensus       158 ~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  237 (265)
T cd06605         158 TFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFV  237 (265)
T ss_pred             cccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHH
Confidence            1567889999999988889999999999999999999999885421                     011 345678899


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+||..+|.+||++.+++..
T Consensus       238 ~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         238 NLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             HHHcCCCchhCcCHHHHhhC
Confidence            99999999999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PTZ00284 protein kinase; Provisional

Probab=99.98  E-value=1.1e-31  Score=239.60  Aligned_cols=204  Identities=13%  Similarity=0.094  Sum_probs=158.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC------CCceeeeeeEEEeC-CeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH------HKNLVCLLGYHIEQ-ECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~------h~~iv~~~~~~~~~-~~~   83 (266)
                      .+|.+.+.||+|+||+||+|.+. ..+..||+|++.             .+++.++      |.+++++++++..+ ...
T Consensus       129 ~~y~i~~~lG~G~fg~V~~a~~~-~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~  207 (467)
T PTZ00284        129 QRFKILSLLGEGTFGKVVEAWDR-KRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHM  207 (467)
T ss_pred             CcEEEEEEEEeccCEEEEEEEEc-CCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceE
Confidence            57999999999999999999975 567889999763             1333443      45688898888764 468


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCC----------------E
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYF----------------T  135 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~----------------~  135 (266)
                      ++|||++ +++|.+++.....+.      +..++..++.++|+ .+++|+     |||++.++                .
T Consensus       208 ~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~  286 (467)
T PTZ00284        208 CIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCR  286 (467)
T ss_pred             EEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCce
Confidence            8999988 668999887665543      44556666678886 478877     89998765                4


Q ss_pred             EEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCcc----------
Q 042690          136 VETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK----------  205 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~----------  205 (266)
                      +||+|||.+....    .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+          
T Consensus       287 vkl~DfG~~~~~~----~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g  362 (467)
T PTZ00284        287 VRICDLGGCCDER----HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLG  362 (467)
T ss_pred             EEECCCCccccCc----cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcC
Confidence            8999999875422    22234568999999999999899999999999999999999999996421100          


Q ss_pred             -----------------------------------------------ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 -----------------------------------------------TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 -----------------------------------------------~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                     ....+.+++.+||..||.+||+++|+++
T Consensus       363 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        363 RLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             CCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence                                                           0123458999999999999999999986

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.98  E-value=5.3e-31  Score=217.75  Aligned_cols=208  Identities=19%  Similarity=0.232  Sum_probs=167.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||++... .++..+++|.+.                .+++.++|+||+++++.+...+..++|+|
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNL-DTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEEC-CCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEe
Confidence            4778899999999999999975 567788888754                37778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc--
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL--  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~--  155 (266)
                      |+.+++|.+++.....+.      +..++..++.++|..++.|.     ||+++.++.++|+|||++...........  
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~  159 (264)
T cd06626          80 YCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEE  159 (264)
T ss_pred             cCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCccccc
Confidence            999999999998754433      33455566678888887777     89999999999999999987643222211  


Q ss_pred             -ccccCCCCcCCccccCCCC---CCcccchhhHHHHHHHHHhCCCcccCCC-----------------Ccc--ccchHHH
Q 042690          156 -TGMRETKGYLPPEWFRNMP---VTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPK--TLEKPVM  212 (266)
Q Consensus       156 -~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~--~~~~~~~  212 (266)
                       ....++..|++||.+.+..   .+.++|+||||+++|++++|..||....                 +..  ....+.+
T Consensus       160 ~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (264)
T cd06626         160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKD  239 (264)
T ss_pred             ccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHH
Confidence             1345688999999987665   7889999999999999999999986421                 111  1456788


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+||+.+|.+||++++++.
T Consensus       240 li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         240 FLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             HHHHHccCCcccCCCHHHHhc
Confidence            999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.98  E-value=1.1e-31  Score=226.19  Aligned_cols=208  Identities=16%  Similarity=0.181  Sum_probs=167.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .|.....||+|+||.||++... .++..+++|.+.              ..++.++|||++++++++..+...+++|||+
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREK-HSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEc-CCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence            3445568999999999999975 567889998863              2667789999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           91 HNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        91 ~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      ++++|.+++.....     ..+..++..++..+|..+++|+     ||+++.++.++|+|||++...... ........+
T Consensus       101 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~-~~~~~~~~~  179 (297)
T cd06659         101 QGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD-VPKRKSLVG  179 (297)
T ss_pred             CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccc-cccccceec
Confidence            99999998865321     3344566677788888888887     899999999999999998754321 112233567


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      +..|+|||.+.+..++.++|+||||+++++|++|+.||....                  .......+.+++.+||+.+|
T Consensus       180 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P  259 (297)
T cd06659         180 TPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREP  259 (297)
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCc
Confidence            899999999988889999999999999999999999985422                  11234567889999999999


Q ss_pred             CCCCCHHHHHHH
Q 042690          223 PLRPSLRIVALM  234 (266)
Q Consensus       223 ~~Rps~~~il~~  234 (266)
                      .+||+++++++.
T Consensus       260 ~~Rps~~~ll~~  271 (297)
T cd06659         260 QERATAQELLDH  271 (297)
T ss_pred             ccCcCHHHHhhC
Confidence            999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.98  E-value=2.5e-31  Score=219.47  Aligned_cols=208  Identities=20%  Similarity=0.262  Sum_probs=167.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe--CCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE--QECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~--~~~~~lv   86 (266)
                      +|.+.+.||.|++|.||++.+. .++..+++|.+.                +.++.++||||+++++++..  ....+++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRK-SDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeec-CCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEE
Confidence            4788899999999999999976 567788888753                36778899999999998764  4567899


Q ss_pred             EEcCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhh-----hcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           87 YKFMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCW-----RTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~-----~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      |||+.+++|.+++...    ..++      +..++..++..+|     ..+++|.     ||+++.++.++|+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~  159 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKI  159 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccccc
Confidence            9999999999999753    2333      3455666667777     5666665     89999999999999999987


Q ss_pred             eccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccccchH
Q 042690          147 LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTLEKP  210 (266)
Q Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~~~~  210 (266)
                      ...... ......++..|++||.+.+..++.++|+||||+++++|++|..||...                .+......+
T Consensus       160 ~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (265)
T cd08217         160 LGHDSS-FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFRRIPYRYSSEL  238 (265)
T ss_pred             ccCCcc-cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCCCCccccCHHH
Confidence            643221 123346789999999998888899999999999999999999998652                223445677


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+++.+|++.+|.+||++.+|++.
T Consensus       239 ~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         239 NEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             HHHHHHHccCCcccCCCHHHHhhC
Confidence            899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.98  E-value=4.6e-31  Score=218.02  Aligned_cols=208  Identities=17%  Similarity=0.178  Sum_probs=172.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++.+.||+|++|.||+|... .++..+++|++.               ..++.++|+|++++++++......+++|||
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~-~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHK-PTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEc-CCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            5788899999999999999986 568889998743               256678899999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECLRP------TWQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++++|.+++.....+      .+..++..++..+|. .++.|+     ||+++.++.++|+|||++........ ....
T Consensus        81 ~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~-~~~~  159 (264)
T cd06623          81 MDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLD-QCNT  159 (264)
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCC-cccc
Confidence            9999999999865543      344566677788888 888887     89999999999999999987642222 2223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------Ccc-ccchHHHHHHHh
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPK-TLEKPVMIAIQF  217 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~-~~~~~~~l~~~c  217 (266)
                      ..++..|+|||.+.+..++.++|+||||+++|+|+||+.|+....                   +.. ....+.+++.+|
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  239 (264)
T cd06623         160 FVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISAC  239 (264)
T ss_pred             eeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHH
Confidence            457889999999888888999999999999999999999885532                   112 455688999999


Q ss_pred             hhcCCCCCCCHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALM  234 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~  234 (266)
                      |..+|.+||++.++++.
T Consensus       240 l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         240 LQKDPKKRPSAAELLQH  256 (264)
T ss_pred             ccCChhhCCCHHHHHhC
Confidence            99999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=1.2e-31  Score=232.23  Aligned_cols=209  Identities=18%  Similarity=0.227  Sum_probs=180.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+..|.+.+.||+|.|++|.+|.+. .++..||||.+.+                +|+.+.|||||+++.+...+..+|+
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~-~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHI-LTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEec-CCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            4678999999999999999999976 6799999998873                8889999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+.+|.+++++..+++.      ....++..++++||...+.|+     |++++.+.++|++|||++..+.  ....
T Consensus       133 V~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~--~~~~  210 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFD--YGLM  210 (596)
T ss_pred             EEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeec--cccc
Confidence            99999999999999876652      344567777788888887777     9999999999999999999875  3445


Q ss_pred             cccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl  218 (266)
                      ....+|++.|.|||+..+..+ ++++|+||+|+++|.|+.|..||.+..               +-......-+++++++
T Consensus       211 lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~l  290 (596)
T KOG0586|consen  211 LQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFL  290 (596)
T ss_pred             ccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccccchheeeeecccceeechhHHHHHHhh
Confidence            556789999999999988776 578999999999999999999998732               3445567778999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      -.+|.+|+++++|..
T Consensus       291 vl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  291 VLNPSKRGPCDQIMK  305 (596)
T ss_pred             ccCccccCCHHHhhh
Confidence            999999999988753

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.2e-31  Score=219.77  Aligned_cols=201  Identities=15%  Similarity=0.146  Sum_probs=162.9

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +.||+|++|.||+|... ..++.+|+|.+..                  .....+|+|++++++++...+..+++|||+.
T Consensus         2 ~~l~~g~~~~v~~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKR-STGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEec-CCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccC
Confidence            57999999999999975 5678899997641                  2224479999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++.....+.      +..++..++.++|..+++|.     ||+++.++.++|+|||++.....     .....+
T Consensus        81 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-----~~~~~~  155 (260)
T cd05611          81 GGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE-----NKKFVG  155 (260)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc-----cccCCC
Confidence            999999997655433      44556667788888888887     89999999999999999876432     223457


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHHhhhcC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      +..|++||.+.+..++.++|+||||+++|+|++|..||....                   .......+.+++.+||+.+
T Consensus       156 ~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  235 (260)
T cd05611         156 TPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMD  235 (260)
T ss_pred             CcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCC
Confidence            889999999888778899999999999999999999986521                   1124567789999999999


Q ss_pred             CCCCCCHHHHHHHHH
Q 042690          222 PPLRPSLRIVALMLQ  236 (266)
Q Consensus       222 p~~Rps~~~il~~l~  236 (266)
                      |++||++..+.+.|.
T Consensus       236 p~~R~~~~~~~~~l~  250 (260)
T cd05611         236 PAKRLGANGYQEIKS  250 (260)
T ss_pred             HHHccCCCcHHHHHc
Confidence            999998765555444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.9e-31  Score=225.37  Aligned_cols=208  Identities=17%  Similarity=0.175  Sum_probs=167.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|++|.||++... .++..+++|.+.                 +.++.++||||+++++.+......+++|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLK-GTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEc-CCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            6888999999999999999975 567889998664                 3667889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc--
Q 042690           88 KFMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT--  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~--  152 (266)
                      ||+.+++|.+++...  ..+.      +..++..++.++|..+++|.     ||+++.++.++|+|||++........  
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~  160 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPV  160 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhccccccccc
Confidence            999999999998753  2233      34556666788888887777     89999999999999999875422110  


Q ss_pred             --------------------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----
Q 042690          153 --------------------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----  202 (266)
Q Consensus       153 --------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----  202 (266)
                                                .......|+..|+|||.+.+..++.++||||||+++|+|++|..||....    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~  240 (316)
T cd05574         161 SKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET  240 (316)
T ss_pred             ccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence                                      01112357889999999988888999999999999999999999986421    


Q ss_pred             -----------Cc--cccchHHHHHHHhhhcCCCCCCC----HHHHHH
Q 042690          203 -----------DP--KTLEKPVMIAIQFVKEKPPLRPS----LRIVAL  233 (266)
Q Consensus       203 -----------~~--~~~~~~~~l~~~cl~~~p~~Rps----~~~il~  233 (266)
                                 +.  .....+.+++.+||..+|.+||+    +++++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         241 FSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             HHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence                       11  13567889999999999999999    666665

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4e-31  Score=219.53  Aligned_cols=209  Identities=15%  Similarity=0.160  Sum_probs=165.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEeCC------e
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIEQE------C   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~~~------~   82 (266)
                      .+.|.+.+.||+|++|.||+|.+. .+++.+++|...             .+++.+ .|+||+++++++....      .
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~   83 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHK-KTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQ   83 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEEC-CCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceE
Confidence            468899999999999999999986 567788888754             256666 6999999999997644      4


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           83 RLLVYKFMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      .++||||+++++|.+++....    .+.      +..++..++.++|..++.|.     ||+++.++.++|+|||++...
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~  163 (275)
T cd06608          84 LWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQL  163 (275)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceec
Confidence            899999999999999886432    333      44567777788888888887     899999999999999998765


Q ss_pred             ccccccccccccCCCCcCCccccCC-----CCCCcccchhhHHHHHHHHHhCCCcccCCC------------------Cc
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRN-----MPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DP  204 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~  204 (266)
                      ... ........++..|+|||.+..     ..++.++||||||+++++|++|..||....                  +.
T Consensus       164 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (275)
T cd06608         164 DST-LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPE  242 (275)
T ss_pred             ccc-hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchh
Confidence            322 222234567889999998753     236788999999999999999999986421                  11


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .....+.+++.+||..||.+||++.++++
T Consensus       243 ~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         243 NWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             hcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            23456789999999999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.98  E-value=2.9e-31  Score=218.45  Aligned_cols=207  Identities=20%  Similarity=0.275  Sum_probs=168.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||++.+. .++..+++|.+.                .+++.++|+|++++++.+...+..++++|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAK-SDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVME   79 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEc-CCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEe
Confidence            4778899999999999999986 567778888763                26778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+.+++|.+++.....  +      .+..++..++.++|..++.|.     ||++++++ .++|+|||.+..... ....
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~-~~~~  158 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND-SMEL  158 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccC-Cccc
Confidence            9999999999975432  2      344556667788888888877     89998885 569999999876542 2222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      .....+++.|+|||...+..++.++|+||||+++++|++|..||...                ..+.....+.+++.+|+
T Consensus       159 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  238 (257)
T cd08225         159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFAPISPNFSRDLRSLISQLF  238 (257)
T ss_pred             ccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHh
Confidence            22345788999999988888899999999999999999999998642                12234557889999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      ..+|++||++.++++
T Consensus       239 ~~~p~~Rpt~~~ll~  253 (257)
T cd08225         239 KVSPRDRPSITSILK  253 (257)
T ss_pred             ccChhhCcCHHHHhh
Confidence            999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.98  E-value=1.8e-31  Score=224.75  Aligned_cols=206  Identities=19%  Similarity=0.232  Sum_probs=164.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +|.+.+.||+|++|.||+|.+. .++..+++|.+.                   ++++.++|+||+++++++.+.+..++
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l   79 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDK-ETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINL   79 (298)
T ss_pred             CceeeeeeeeccccEEEEEEEC-CCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEE
Confidence            3778889999999999999975 567889998763                   35678899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+ +++|.+++.... .++      +..++..++.++|.++++|.     ||+++.++.++|+|||++...... ..
T Consensus        80 v~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~-~~  157 (298)
T cd07841          80 VFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSP-NR  157 (298)
T ss_pred             EEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCC-Cc
Confidence            99999 889999997655 443      44556666688888888877     899999999999999999875432 12


Q ss_pred             ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------------  203 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------------  203 (266)
                      ......++..|+|||.+.+ ..++.++|+||||+++++|++|.++|.....                             
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (298)
T cd07841         158 KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYV  237 (298)
T ss_pred             cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccc
Confidence            2233456788999998754 4578899999999999999999776643211                             


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    ......+.+++.+||+.+|.+||++.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         238 EFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence                          112345678999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.98  E-value=9.2e-31  Score=219.70  Aligned_cols=210  Identities=18%  Similarity=0.144  Sum_probs=163.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEeC-----CeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~~-----~~~   83 (266)
                      .++|.+.+.||+|+||.||++... .++..+++|.+.             .+++.+ +|||++++++++...     +..
T Consensus        21 ~~~y~~~~~l~~g~~~~vy~~~~~-~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~   99 (291)
T cd06639          21 TDTWEIIETIGKGTYGKVYKVTNK-KDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQL   99 (291)
T ss_pred             CCCeEEEEEeecCCCeEEEEEEEC-CCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCee
Confidence            456999999999999999999975 567888988764             255566 799999999998653     358


Q ss_pred             EEEEEcCCCCCHHHHHhh----cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           84 LLVYKFMHNRSISSLLYE----CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~----~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ++||||+++++|.++++.    ...+.      +..++..++..+|..+++|+     |++++.++.++|+|||++....
T Consensus       100 ~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~  179 (291)
T cd06639         100 WLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLT  179 (291)
T ss_pred             EEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhcc
Confidence            999999999999998863    22334      33445566678888887777     8999999999999999987653


Q ss_pred             cccccccccccCCCCcCCccccCCC-----CCCcccchhhHHHHHHHHHhCCCcccCCC------------------Ccc
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNM-----PVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPK  205 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~  205 (266)
                      ... .......++..|+|||.+...     .++.++|+||||+++|+|++|+.|+....                  +..
T Consensus       180 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (291)
T cd06639         180 STR-LRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEK  258 (291)
T ss_pred             ccc-ccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccc
Confidence            211 112234578899999987543     36789999999999999999999886521                  112


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ....+.+++.+||+.+|.+||++.++++.
T Consensus       259 ~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         259 WCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             cCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            33457789999999999999999999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-32  Score=238.96  Aligned_cols=210  Identities=20%  Similarity=0.236  Sum_probs=171.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++.+.++||+|.||.|++|.|..  ++--.||+|.+.               ..|.+++|||++++||+..+ ....+|
T Consensus       110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV  188 (1039)
T KOG0199|consen  110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMV  188 (1039)
T ss_pred             HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHH
Confidence            467788999999999999999964  344557999887               27889999999999999887 567899


Q ss_pred             EEcCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCccc-----cceeecCCCEEEEeecCcceeecccccc
Q 042690           87 YKFMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALA-----CRILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h-----~nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+++.|+|.+.++...+  +      .+..+++.++.++-..+.+|     +|+++-....+|++|||+.+.+..++..
T Consensus       189 ~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~  268 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDM  268 (1039)
T ss_pred             hhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcc
Confidence            999999999999987322  1      35566666665555555555     4999999999999999999988655544


Q ss_pred             c--cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHH
Q 042690          154 T--LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       154 ~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~  214 (266)
                      -  .....-...|+|||.+....++.++|+|++|+++|||+| |+.||.+                ..+....+.+.+++
T Consensus       269 Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~im  348 (1039)
T KOG0199|consen  269 YVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIM  348 (1039)
T ss_pred             eEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccccccCCCCCCChHHHHHHH
Confidence            2  233455678999999999999999999999999999998 6679987                23556778899999


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+||..+|.+||++..|.+.
T Consensus       349 k~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  349 KNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             HHhccCCccccccHHHHHHh
Confidence            99999999999999999744

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-33  Score=259.50  Aligned_cols=207  Identities=20%  Similarity=0.228  Sum_probs=169.8

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ++-...||+|.||.||.|..- .+|.-.|+|.+.                .++..++|||+|++||+-...+..+|.|||
T Consensus      1237 Wqrg~~Ig~G~fG~VYtavN~-~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1237 WQRGNFIGGGTFGKVYTAVNL-DTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             eccccccCCcceeeeEEeecC-CccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHH
Confidence            556678999999999999964 667777777665                377788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-c--ccc
Q 042690           90 MHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-T--QTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~--~~~  155 (266)
                      |++|+|.+.+...+.      .-+..++...+.++|.++++|+     ||+++.+|.+|++|||.|.....+- +  ...
T Consensus      1316 C~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el 1395 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGEL 1395 (1509)
T ss_pred             hccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHH
Confidence            999999999976543      2345677888899999988888     9999999999999999999875431 1  122


Q ss_pred             ccccCCCCcCCccccCCCC---CCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMP---VTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~  215 (266)
                      ....||+.|||||.+.+..   -..++|||||||++.||+||+.||++                 ..|...+....+++.
T Consensus      1396 ~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle 1475 (1509)
T KOG4645|consen 1396 QSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLE 1475 (1509)
T ss_pred             HhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHH
Confidence            4578999999999987543   45689999999999999999999987                 123334455668999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+|.++.++++
T Consensus      1476 ~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1476 HCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             HHHhcCchhhhHHHHHHH
Confidence            999999999988776664

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=9.8e-33  Score=218.25  Aligned_cols=209  Identities=15%  Similarity=0.223  Sum_probs=163.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------H-------hhhcCCCceeeeeeEEEeCCeEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------V-------VHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------~-------l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      -+..+++.+..||.|+.|.|++++++ .++..+|+|.+.+         +       ++..+.|+||+.+|+|..+...+
T Consensus        89 ~dindl~~l~dlGsGtcG~V~k~~~r-s~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~  167 (391)
T KOG0983|consen   89 ADINDLENLGDLGSGTCGQVWKMRFR-STGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVF  167 (391)
T ss_pred             cChHHhhhHHhhcCCCccceEEEEEc-ccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHH
Confidence            34556778889999999999999987 7889999998873         2       23334799999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC-----------HHHHHHHHH--HHhhhcCccccceeecCCCEEEEeecCcceeecccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT-----------WQQRMQDCI--RDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~-----------~~~~l~~~~--~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      +.||.|.. -++.+++.....-           ....+.++.  +.++|+++.++|||+|..|++||||||++..+.  +
T Consensus       168 IcMelMs~-C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlv--d  244 (391)
T KOG0983|consen  168 ICMELMST-CAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLV--D  244 (391)
T ss_pred             HHHHHHHH-HHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceee--c
Confidence            99998843 5666665433311           111111111  556677788889999999999999999998875  4


Q ss_pred             ccccccccCCCCcCCccccCCC---CCCcccchhhHHHHHHHHHhCCCcccCC-------------C------Cccccch
Q 042690          152 TQTLTGMRETKGYLPPEWFRNM---PVTVKVDVYSFGVMLLEIISCRCVERQG-------------S------DPKTLEK  209 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~---~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------~------~~~~~~~  209 (266)
                      +..++...|.+.|||||.+...   .|+.++||||||++++||+||+.||...             .      ....++.
T Consensus       245 SkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~  324 (391)
T KOG0983|consen  245 SKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPD  324 (391)
T ss_pred             ccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHH
Confidence            5566677799999999988643   4888999999999999999999999871             1      1225678


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+++..||..|+.+||.-.++++
T Consensus       325 F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  325 FQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             HHHHHHHHhhcCcccCcchHHHhc
Confidence            899999999999999999887764

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=4.5e-33  Score=217.04  Aligned_cols=205  Identities=18%  Similarity=0.240  Sum_probs=171.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .|.+-+.||+|.|+.|++..+. .+++.+++|.+.                .+.+.++||||+++.+.+.+.+..|+|+|
T Consensus        12 ~y~l~e~igkG~FSvVrRc~~~-~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   12 NYDVKEELGKGAFSVVRRCVHK-TTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhHHHHHccCchHHHHHHHhc-cchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            6788899999999999999876 678888887664                47889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC------CCCHHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECL------RPTWQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~------~~~~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ++.|++|..-|-+..      .-.+.+++..++++||.++++|+     |+++-.   ..-+||+|||+|....  ....
T Consensus        91 ~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~--~g~~  168 (355)
T KOG0033|consen   91 LVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN--DGEA  168 (355)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC--Cccc
Confidence            999999976554321      13466888889999999999998     677642   3468999999999875  4455


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~~~l~~  215 (266)
                      .-+..||+.|||||++...+++..+|||+.|+|+|-|+.|.+||.+..               +    +...++..++++
T Consensus       169 ~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~Lvr  248 (355)
T KOG0033|consen  169 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIR  248 (355)
T ss_pred             cccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHH
Confidence            567899999999999999999999999999999999999999998711               1    234567778999


Q ss_pred             HhhhcCCCCCCCHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il  232 (266)
                      +||..||.+|.|+.|.|
T Consensus       249 rML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  249 RMLTVNPKKRITADEAL  265 (355)
T ss_pred             HHhccChhhhccHHHHh
Confidence            99999999999987654

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=1.2e-31  Score=225.36  Aligned_cols=203  Identities=17%  Similarity=0.216  Sum_probs=164.1

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ...||+|+||.||++... .++..+++|.+.              ..++.++|||++++++.+...+..++||||+.+++
T Consensus        27 ~~~lg~g~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~  105 (292)
T cd06658          27 FIKIGEGSTGIVCIATEK-HTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGA  105 (292)
T ss_pred             hhcccCCCCeEEEEEEEC-CCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCc
Confidence            467999999999999975 567889998753              36778899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      |.+++... .+.      +..++..++.++|..+++|+     |++++.++.++|+|||++...... ........++..
T Consensus       106 L~~~~~~~-~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~-~~~~~~~~~~~~  183 (292)
T cd06658         106 LTDIVTHT-RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE-VPKRKSLVGTPY  183 (292)
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccc-cccCceeecCcc
Confidence            99988543 333      34555566688888888877     899999999999999998754321 122233557889


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------ccccchHHHHHHHhhhcCCCCC
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------PKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      |+|||.+.+..++.++|+||||+++|+|++|..||.....                  ......+.+++.+|+..+|.+|
T Consensus       184 y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  263 (292)
T cd06658         184 WMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQR  263 (292)
T ss_pred             ccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHC
Confidence            9999999888889999999999999999999999865221                  1133456789999999999999


Q ss_pred             CCHHHHHHH
Q 042690          226 PSLRIVALM  234 (266)
Q Consensus       226 ps~~~il~~  234 (266)
                      |+++++++.
T Consensus       264 pt~~~il~~  272 (292)
T cd06658         264 ATAQELLQH  272 (292)
T ss_pred             cCHHHHhhC
Confidence            999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=2.1e-31  Score=256.85  Aligned_cols=213  Identities=19%  Similarity=0.267  Sum_probs=166.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      .+...+.||+|+||.||+|.+. .++..||+|++.          +.+++++||||+++++++.++...++||||+++|+
T Consensus       691 ~~~~~~~ig~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~  769 (968)
T PLN00113        691 SLKEENVISRGKKGASYKGKSI-KNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKN  769 (968)
T ss_pred             hCCcccEEccCCCeeEEEEEEC-CCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCc
Confidence            3556678999999999999975 577889999774          46788899999999999999999999999999999


Q ss_pred             HHHHHhhc---CCCCHHHHHHHHHHHhh---hcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           95 ISSLLYEC---LRPTWQQRMQDCIRDCW---RTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        95 L~~~l~~~---~~~~~~~~l~~~~~~~~---~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      |.++++..   ....+..++..++.++|   ..+++|+     ||+++.++..++. |+.+.....     .....++..
T Consensus       770 L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~-----~~~~~~t~~  843 (968)
T PLN00113        770 LSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT-----DTKCFISSA  843 (968)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc-----CCCcccccc
Confidence            99999641   11334455556667777   3355665     8999998888775 555543211     122357899


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------------CccccchH
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------------DPKTLEKP  210 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------------~~~~~~~~  210 (266)
                      |+|||++.+..++.++||||||+++|||+||+.|+....                                 ......++
T Consensus       844 y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  923 (968)
T PLN00113        844 YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEV  923 (968)
T ss_pred             ccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHH
Confidence            999999998889999999999999999999999874311                                 00112345


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      .+++.+||+.+|.+||+++++++.|+.......+
T Consensus       924 ~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~~~  957 (968)
T PLN00113        924 MNLALHCTATDPTARPCANDVLKTLESASRSSSS  957 (968)
T ss_pred             HHHHHhhCcCCchhCcCHHHHHHHHHHhhccccc
Confidence            6789999999999999999999999998775543

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.97  E-value=7.8e-31  Score=217.72  Aligned_cols=206  Identities=18%  Similarity=0.189  Sum_probs=153.3

Q ss_pred             eccCCCcceEEEEEEEcCC-CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPG-DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~-~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      ++||+|+||.||++..... ....+++|...               ..++.++||||+++++.+......++||||++++
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            3699999999999985422 23345565433               2466789999999999999888899999999999


Q ss_pred             CHHHHHhhcCC----C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-cccccc
Q 042690           94 SISSLLYECLR----P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-TQTLTG  157 (266)
Q Consensus        94 ~L~~~l~~~~~----~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~~~~~~  157 (266)
                      +|.+++.+...    .      .+..++..++.++|..+++|+     ||+++.++.++|+|||++....... ......
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  160 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDD  160 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccC
Confidence            99999975321    1      234456667788888888876     8999999999999999986432111 112223


Q ss_pred             ccCCCCcCCccccCC-------CCCCcccchhhHHHHHHHHHhC-CCcccCCC---------------------Cccccc
Q 042690          158 MRETKGYLPPEWFRN-------MPVTVKVDVYSFGVMLLEIISC-RCVERQGS---------------------DPKTLE  208 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~i~~~l~tg-~~p~~~~~---------------------~~~~~~  208 (266)
                      ..++..|+|||.+..       ..++.++|+||||+++|+|+++ ..||....                     ......
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (268)
T cd05086         161 KCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSE  240 (268)
T ss_pred             CcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcH
Confidence            557889999998742       2457889999999999999975 45664311                     112345


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      .+.+++..|| .+|.+||+++++++.|.
T Consensus       241 ~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         241 RWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             HHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            5677899999 67999999999998773

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.97  E-value=1.8e-31  Score=220.09  Aligned_cols=205  Identities=19%  Similarity=0.217  Sum_probs=169.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|++.+.||.|+||.||++.+. .++..+++|.+.                 +.++.++||||+++++.+......++||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   79 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKR-DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVV   79 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEc-cCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEE
Confidence            4788999999999999999975 567889998663                 2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||+.+++|.+++.....+.      +..++..++.++|..++.|.     ||+++.++.++|+|||++.......  ...
T Consensus        80 e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~--~~~  157 (258)
T cd05578          80 DLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT--LTT  157 (258)
T ss_pred             eCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc--ccc
Confidence            9999999999997654433      44556666788888887777     8999999999999999987653221  223


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl  218 (266)
                      ...++..|+|||.+.+..++.++|+||||+++|+|++|..||....                  ++.....+.+++.+||
T Consensus       158 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  237 (258)
T cd05578         158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLL  237 (258)
T ss_pred             ccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhccccccCcccCcHHHHHHHHHHc
Confidence            4557889999999888888999999999999999999999987533                  2234467788999999


Q ss_pred             hcCCCCCCCH--HHHH
Q 042690          219 KEKPPLRPSL--RIVA  232 (266)
Q Consensus       219 ~~~p~~Rps~--~~il  232 (266)
                      +.||.+||++  .|++
T Consensus       238 ~~~p~~R~~~~~~~l~  253 (258)
T cd05578         238 ERDPQKRLGDNLKDLK  253 (258)
T ss_pred             cCChhHcCCccHHHHh
Confidence            9999999999  5554

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=6.4e-31  Score=219.02  Aligned_cols=207  Identities=15%  Similarity=0.177  Sum_probs=166.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcC---CCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAH---HKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~---h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .|+..+.||+|++|.||+|.+. .++..+++|.+.               .+++.++   |||++++++++......++|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHV-PTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEc-CCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEE
Confidence            4667889999999999999975 577889999653               2555665   99999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++++|.+++... .+.      +..++..++..+|..+++|.     ||+++.++.++|+|||++....... ...
T Consensus        81 ~e~~~~~~L~~~~~~~-~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~-~~~  158 (277)
T cd06917          81 MEYAEGGSVRTLMKAG-PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNS-SKR  158 (277)
T ss_pred             EecCCCCcHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCc-ccc
Confidence            9999999999998653 333      33456666688888887777     8999999999999999998764332 222


Q ss_pred             ccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------c-cccchHHHHHHHh
Q 042690          156 TGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------P-KTLEKPVMIAIQF  217 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------~-~~~~~~~~l~~~c  217 (266)
                      ....++..|+|||.+.+ ..++.++|+||||+++|+|++|..||.....                . .....+.+++.+|
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  238 (277)
T cd06917         159 STFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAAC  238 (277)
T ss_pred             ccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCCcccCCHHHHHHHHHH
Confidence            33467889999998764 4468899999999999999999999865211                1 1445788999999


Q ss_pred             hhcCCCCCCCHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALM  234 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~  234 (266)
                      |+.||.+||++.+++..
T Consensus       239 l~~~p~~R~~~~~il~~  255 (277)
T cd06917         239 LDEEPKERLSAEELLKS  255 (277)
T ss_pred             cCCCcccCcCHHHHhhC
Confidence            99999999999999863

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-32  Score=232.69  Aligned_cols=213  Identities=19%  Similarity=0.224  Sum_probs=177.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +...+.++||+|.||.|..+...  ....||+|.++               ++|.+++||||++++++|..++.++++||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeve--g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVE--GPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             hheehhhhhcCcccceeEEEEec--CceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence            35778899999999999999973  56889999887               37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++|+|.+++..+..        .++..++...++++.+.+++|+     |.|++.++++|++|||+++.+-..+-...
T Consensus       616 YmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~v  695 (807)
T KOG1094|consen  616 YMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRV  695 (807)
T ss_pred             HHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceee
Confidence            9999999999987633        4567778888888887777776     99999999999999999986543333322


Q ss_pred             c-cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh--CCCcccC-----------------------CCCccccch
Q 042690          156 T-GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS--CRCVERQ-----------------------GSDPKTLEK  209 (266)
Q Consensus       156 ~-~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t--g~~p~~~-----------------------~~~~~~~~~  209 (266)
                      . ......+|||+|.+..+.++.++|+|+||+++||+++  .+.|+..                       ..++-....
T Consensus       696 qgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~  775 (807)
T KOG1094|consen  696 QGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQG  775 (807)
T ss_pred             ecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHH
Confidence            2 3445689999999888899999999999999999875  5558866                       224445677


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      +.+++.+||..+-.+||+++++-.-|+..
T Consensus       776 lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  776 LYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             HHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            88999999999999999999998877654

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=9.9e-31  Score=219.21  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=164.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC--CeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ--ECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~--~~~~lv~   87 (266)
                      .|...+.||.|++|.||++... .++..+++|.+.               +.++.++||||+++++++...  +..++||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLK-NTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEEC-CCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            5788899999999999999986 567888888654               377788999999999988653  4689999


Q ss_pred             EcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           88 KFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ||+++++|.+++...    ..+      .+..++..++.++|..+++|+     |++++.++.++|+|||++....... 
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-  159 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL-  159 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccccc-
Confidence            999999999887532    122      355667777788888888887     7999999999999999987643211 


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------c----------c
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------P----------K  205 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------~----------~  205 (266)
                        .....++..|++||.+.+..++.++|+||||+++|+|++|..||.....                 +          .
T Consensus       160 --~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (287)
T cd06621         160 --AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIK  237 (287)
T ss_pred             --cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCc
Confidence              1233467889999999888899999999999999999999998865310                 0          1


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ....+.+++.+||+.+|.+||++.|+++
T Consensus       238 ~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         238 WSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             hHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            1235678999999999999999999886

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.97  E-value=5e-31  Score=217.30  Aligned_cols=201  Identities=22%  Similarity=0.294  Sum_probs=157.3

Q ss_pred             eccCCCcceEEEEEEEcCCC---------cceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           30 KKPCGGSFSTVYTGVLAPGD---------KTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~---------~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +.||+|+||.||+|.+....         ...+++|...             .+++.++||||+++++++.. ...++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            46899999999999985222         1346666543             37788899999999999887 7789999


Q ss_pred             EcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-------EEEEeecCcceeec
Q 042690           88 KFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-------TVETSDLGLAKLLM  148 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-------~~~l~Dfg~a~~~~  148 (266)
                      ||+.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++       .++|+|||++....
T Consensus        80 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~  159 (259)
T cd05037          80 EYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVL  159 (259)
T ss_pred             EcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccccc
Confidence            9999999999998654 333      34556666678888887777     89999888       89999999998653


Q ss_pred             cccccccccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhC-CCcccCCC--------------CccccchHH
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISC-RCVERQGS--------------DPKTLEKPV  211 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg-~~p~~~~~--------------~~~~~~~~~  211 (266)
                      .     .....++..|+|||.+.+.  .++.++|+||||+++|+|++| ..|+....              +......+.
T Consensus       160 ~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (259)
T cd05037         160 S-----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELA  234 (259)
T ss_pred             c-----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHH
Confidence            2     2223456789999998766  688999999999999999995 55664421              111235778


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      +++.+||..+|.+||++.++++.|+
T Consensus       235 ~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         235 NLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             HHHHHHhccChhhCCCHHHHHHhcC
Confidence            9999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.97  E-value=5.8e-31  Score=220.47  Aligned_cols=206  Identities=17%  Similarity=0.201  Sum_probs=167.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .|...+.||+|++|.||++... .++..+++|++.              .+++.++|||++++++++...+..++++||+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDK-STGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEEC-CCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEecc
Confidence            4445679999999999999975 567889998653              3677889999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           91 HNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        91 ~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      .+++|.+++.. .+++      +..++..++..+|.+++.|+     ||+++.++.++|+|||.+...... ........
T Consensus        99 ~~~~L~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~-~~~~~~~~  176 (285)
T cd06648          99 EGGALTDIVTH-TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE-VPRRKSLV  176 (285)
T ss_pred             CCCCHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccC-Cccccccc
Confidence            99999999876 3333      44566667788888888777     899999999999999988754321 11222345


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ++..|+|||.+.+..++.++|+||||+++|+|++|+.||....                  .......+.+++.+||+.+
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~  256 (285)
T cd06648         177 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRD  256 (285)
T ss_pred             CCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccC
Confidence            7889999999988889999999999999999999999875421                  1113457889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+||++.++++
T Consensus       257 p~~Rpt~~~il~  268 (285)
T cd06648         257 PAQRATAAELLN  268 (285)
T ss_pred             hhhCcCHHHHcc
Confidence            999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=9.3e-31  Score=218.62  Aligned_cols=199  Identities=19%  Similarity=0.170  Sum_probs=158.6

Q ss_pred             ccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           31 KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .||+|+||.||++... .++..+|+|.+..                    .+...+|||++.+++.+..++..++||||+
T Consensus         1 ~lg~G~~g~Vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKA-DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEEC-CCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecC
Confidence            4799999999999975 5688899985531                    222346999999999999889999999999


Q ss_pred             CCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           91 HNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        91 ~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      .+++|.+++.....+.+      ..++..++.++|..+++|+     ||+++.++.++|+|||++......   ......
T Consensus        80 ~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~---~~~~~~  156 (279)
T cd05633          80 NGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK---KPHASV  156 (279)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceecccc---CccCcC
Confidence            99999999986655443      3556666788888888887     899999999999999998754321   122345


Q ss_pred             CCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          160 ETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       160 ~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ++..|+|||.+. +..++.++|+||+|+++++|++|..||....                  ++.....+.+++.+||..
T Consensus       157 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  236 (279)
T cd05633         157 GTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQR  236 (279)
T ss_pred             CCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcC
Confidence            899999999876 4557899999999999999999999986421                  123445677899999999


Q ss_pred             CCCCCC-----CHHHHHH
Q 042690          221 KPPLRP-----SLRIVAL  233 (266)
Q Consensus       221 ~p~~Rp-----s~~~il~  233 (266)
                      ||.+||     ++.++++
T Consensus       237 ~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         237 DVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             CHHHhcCCCCCCHHHHHh
Confidence            999999     5777765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=5.3e-31  Score=220.18  Aligned_cols=205  Identities=20%  Similarity=0.265  Sum_probs=162.9

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |.+.+.||+|++|.||+|.+. .++..+++|++.                +.++.++|||++++++++.+.+..+++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDK-LTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEc-CCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEec
Confidence            467789999999999999975 578889998653                367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      +. ++|.+++....  .+.      +..++..++.++|..++.|+     ||+++.++.++|+|||++...... .....
T Consensus        80 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~-~~~~~  157 (283)
T cd07835          80 LD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVP-VRTYT  157 (283)
T ss_pred             cC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCC-ccccC
Confidence            95 58999987544  333      44556666688888888877     899999999999999999764322 11222


Q ss_pred             cccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------------
Q 042690          157 GMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------------  202 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------------  202 (266)
                      ...++..|+|||.+.+. .++.++|+||||+++|+|++|+.||....                                 
T Consensus       158 ~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T cd07835         158 HEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTF  237 (283)
T ss_pred             ccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhc
Confidence            33467889999987654 56889999999999999999999875321                                 


Q ss_pred             -----------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                 .+.....+.+++.+|++.+|.+||+++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         238 PKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             ccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                       1223356778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=6.8e-31  Score=222.45  Aligned_cols=209  Identities=18%  Similarity=0.235  Sum_probs=165.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~   83 (266)
                      +..+|.+.+.||+|++|.||+|.+. .++..||+|.+.                .+++.++|+|++++++++...  +..
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDT-TSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSI   83 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEEC-CCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeE
Confidence            4578999999999999999999976 578889998763                377788999999999998754  468


Q ss_pred             EEEEEcCCCCCHHHHHhhc-CC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYEC-LR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~-~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||+.+ +|.+++... ..      ..+..++..++.++|..+++|+     ||+++.++.++|+|||.+.......
T Consensus        84 ~lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~  162 (309)
T cd07845          84 FLVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPA  162 (309)
T ss_pred             EEEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCcc
Confidence            999999975 888888653 22      2345566677788888888887     8999999999999999998754221


Q ss_pred             ccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                       .......++..|+|||.+.+ ..++.++|+||||+++|+|++|..||.....                           
T Consensus       163 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (309)
T cd07845         163 -KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPL  241 (309)
T ss_pred             -CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccc
Confidence             22223345778999998765 4578899999999999999999998853211                           


Q ss_pred             ------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        ......+.+++.+|+..||.+||+++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         242 VGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             cccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                              012455678999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=1.4e-30  Score=224.59  Aligned_cols=215  Identities=19%  Similarity=0.210  Sum_probs=170.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      ...|...+.||+|+||.||+|... .++..+|+|.+.                .+++.++||||+++++++...      
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDT-VTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEEC-CCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            357999999999999999999976 578889999763                367788999999999988643      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ...++||||+.+ +|.+.+...-.    ..+..++..++.++|..+++|+     ||+++.++.++|+|||++.....  
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~--  170 (353)
T cd07850          94 QDVYLVMELMDA-NLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--  170 (353)
T ss_pred             CcEEEEEeccCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCC--
Confidence            346899999965 88888764311    2245667777788898888887     89999999999999999987532  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      ........++..|+|||.+.+..++.++|+||||+++|+|++|+.||.....                            
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (353)
T cd07850         171 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRN  250 (353)
T ss_pred             CCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhH
Confidence            1122334578899999999888899999999999999999999988853210                            


Q ss_pred             ------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhC
Q 042690          204 ------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEV  241 (266)
Q Consensus       204 ------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~  241 (266)
                                                    ......+.+++.+||+.||.+||++.++++.  ++.|...
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~~~  320 (353)
T cd07850         251 YVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWYDP  320 (353)
T ss_pred             HhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhccCC
Confidence                                          0112346789999999999999999999954  6666554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.97  E-value=9.7e-31  Score=218.14  Aligned_cols=196  Identities=23%  Similarity=0.269  Sum_probs=159.1

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||+|+||+||++... .++..+++|.+.                 ++++.++|||++++++.+...+..++||||+++++
T Consensus         1 lg~g~~g~vy~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVK-ATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEc-CCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            689999999999875 567889988653                 36778899999999999999999999999999999


Q ss_pred             HHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           95 ISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        95 L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      |.+++....  .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||.+.....  ........++
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~  157 (277)
T cd05577          80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG--GKKIKGRAGT  157 (277)
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhcc--CCccccccCC
Confidence            999997654  333      33456666788888888887     89999999999999999876432  2222334578


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHHhhhcCC
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      ..|++||.+.+..++.++|+||||+++++|++|+.||....                   +......+.+++.+||+.+|
T Consensus       158 ~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  237 (277)
T cd05577         158 PGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDP  237 (277)
T ss_pred             CCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCCh
Confidence            89999999888888999999999999999999999985421                   12345677899999999999


Q ss_pred             CCCCCHHH
Q 042690          223 PLRPSLRI  230 (266)
Q Consensus       223 ~~Rps~~~  230 (266)
                      .+||++++
T Consensus       238 ~~R~~~~~  245 (277)
T cd05577         238 EKRLGCRG  245 (277)
T ss_pred             hHccCCCc
Confidence            99994433

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=6.5e-31  Score=220.83  Aligned_cols=208  Identities=16%  Similarity=0.214  Sum_probs=165.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~~   84 (266)
                      +.+|.+.+.||+|++|.||+|.+. .++..+++|.+.                .+++.++||||+++++++...  ...+
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~   82 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDK-KTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIY   82 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEEC-CCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEE
Confidence            457888999999999999999985 567788888663                367788999999999998877  7899


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+ +|.+++..... ++      +..++..++.++|..+++|.     ||+++.++.++|+|||++....... 
T Consensus        83 lv~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~-  160 (293)
T cd07843          83 MVMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL-  160 (293)
T ss_pred             EEehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCc-
Confidence            99999975 99988875432 33      44556677788888888887     8999999999999999998754321 


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......++..|+|||.+.+. .++.++|+||+|+++|+|++|..||.....                            
T Consensus       161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (293)
T cd07843         161 KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGA  240 (293)
T ss_pred             cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchh
Confidence            222334568899999987654 368899999999999999999988753110                            


Q ss_pred             -----------------cc--ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PK--TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~--~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.  ....+.+++.+||+.+|++||++.|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         241 KKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             cccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence                             00  2455678999999999999999999875

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=1.5e-30  Score=215.12  Aligned_cols=199  Identities=16%  Similarity=0.174  Sum_probs=163.2

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||.|++|.||++... .++..+++|.+.                 .+++.++||||+++++.+.++...+++|||+++++
T Consensus         1 lg~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVK-SKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEEC-CCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            689999999999985 567889998753                 26778899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      |.+++.....+.      +..++..++.++|..+++|.     ||+++.++.++|+|||++.......  ......++..
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~  157 (262)
T cd05572          80 LWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ--KTWTFCGTPE  157 (262)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc--ccccccCCcC
Confidence            999998655543      44456667788888888887     8999999999999999998764321  2223457889


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHHhhhcCCCC
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~cl~~~p~~  224 (266)
                      |++||.+.+..++.++|+||+|+++|+|++|..||....                   +......+.+++.+||+.+|.+
T Consensus       158 ~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~  237 (262)
T cd05572         158 YVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEE  237 (262)
T ss_pred             ccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhh
Confidence            999999888888999999999999999999999986533                   1122357788999999999999


Q ss_pred             CCC-----HHHHHH
Q 042690          225 RPS-----LRIVAL  233 (266)
Q Consensus       225 Rps-----~~~il~  233 (266)
                      ||+     ++|+++
T Consensus       238 R~~~~~~~~~~l~~  251 (262)
T cd05572         238 RLGNLKGGIKDIKK  251 (262)
T ss_pred             CcCCcccCHHHHhc
Confidence            999     677665

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6e-32  Score=234.54  Aligned_cols=205  Identities=16%  Similarity=0.271  Sum_probs=170.2

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      |.+.+|  ...||+|+|-+||+|.+. .++-.||+-.++                  .+|+.++||||+++|+.|.+...
T Consensus        39 gRy~k~--~evLGrGafKtVYka~De-~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n  115 (632)
T KOG0584|consen   39 GRYLKF--DEVLGRGAFKTVYKAFDE-EEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDN  115 (632)
T ss_pred             Cceeeh--hhhcccccceeeeecccc-ccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCC
Confidence            334444  578999999999999974 677778764433                  38899999999999999987654


Q ss_pred             --EEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcC--cccc-----ceeecCC-CEEEEeecCccee
Q 042690           83 --RLLVYKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTR--ALAC-----RILLHDY-FTVETSDLGLAKL  146 (266)
Q Consensus        83 --~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~--~~h~-----nili~~~-~~~~l~Dfg~a~~  146 (266)
                        +.+|+|.+..|+|.+|.+..++      ..|.+++...+.++|+++  ++|+     ||||+++ |.+|++|+|+|..
T Consensus       116 ~~in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl  195 (632)
T KOG0584|consen  116 KTINFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATL  195 (632)
T ss_pred             ceeeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHH
Confidence              8899999999999999998877      468888888888888774  7777     9999875 8999999999987


Q ss_pred             eccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------Ccc-----ccc
Q 042690          147 LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------DPK-----TLE  208 (266)
Q Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------~~~-----~~~  208 (266)
                      ..   .....+.+||+.|||||++. ..|+...||||||+-+.||+|+..|+.+-.             .|.     ..+
T Consensus       196 ~r---~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dP  271 (632)
T KOG0584|consen  196 LR---KSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDP  271 (632)
T ss_pred             hh---ccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCH
Confidence            54   23334578999999999987 579999999999999999999999998822             222     235


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.++|.+|+.. .+.|||+.|+|+
T Consensus       272 evr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  272 EVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             HHHHHHHHHhcC-chhccCHHHHhh
Confidence            677899999999 999999999985

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.97  E-value=2e-30  Score=212.19  Aligned_cols=206  Identities=19%  Similarity=0.239  Sum_probs=168.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      +|...+.||+|++|.||++.+. .++..+++|+..              ..++.++|+|++++++++..+...++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHK-RTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             CceeeeeeccCCceEEEEEEEC-CCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecC
Confidence            3677889999999999999985 467788888764              3677889999999999999999999999999


Q ss_pred             CCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           91 HNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        91 ~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      .+++|.+++... ..+.      +..++..++..+|..++.|.     ||+++.++.++|+|||.+........  ....
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~  157 (253)
T cd05122          80 SGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RNTM  157 (253)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc--ccce
Confidence            999999999765 3333      33455566677887777776     89999999999999999987543221  2345


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      .++..|++||.+.+...+.++|+||||+++++|++|+.|+....                  .......+.+++.+||+.
T Consensus       158 ~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  237 (253)
T cd05122         158 VGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQK  237 (253)
T ss_pred             ecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccC
Confidence            67889999999888788999999999999999999999886531                  111256778999999999


Q ss_pred             CCCCCCCHHHHHH
Q 042690          221 KPPLRPSLRIVAL  233 (266)
Q Consensus       221 ~p~~Rps~~~il~  233 (266)
                      ||.+||++.++++
T Consensus       238 ~p~~R~t~~~~l~  250 (253)
T cd05122         238 NPEKRPTAEQLLK  250 (253)
T ss_pred             ChhhCCCHHHHhc
Confidence            9999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.97  E-value=8e-31  Score=219.13  Aligned_cols=206  Identities=18%  Similarity=0.250  Sum_probs=164.0

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECRLLVY   87 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~~lv~   87 (266)
                      |.+.+.||+|++|.||+|.+. .++..+++|.+.                .+++.++|||++++++++...  +..++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~-~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNK-KTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEEC-CCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEe
Confidence            567899999999999999986 567788898774                256788999999999999887  7899999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+ +|.+++... ..++      +..++..++..+|..++.|.     ||++++++.++|+|||++...........
T Consensus        80 e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~  158 (287)
T cd07840          80 EYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY  158 (287)
T ss_pred             ccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccc
Confidence            99975 899888754 2333      44556666688888887776     89999999999999999987654332233


Q ss_pred             ccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCCc------------------------------
Q 042690          156 TGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDP------------------------------  204 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~------------------------------  204 (266)
                      ....++..|+|||.+.+ ..++.++|+||||+++|+|+||+.||......                              
T Consensus       159 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07840         159 TNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENL  238 (287)
T ss_pred             cccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhc
Confidence            34556788999997664 45788999999999999999999888542110                              


Q ss_pred             ---------------c-ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ---------------K-TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ---------------~-~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     . ....+.+++.+||..+|.+||+++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         239 KPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             cccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                           0 1456778999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=1.1e-30  Score=220.91  Aligned_cols=213  Identities=18%  Similarity=0.241  Sum_probs=165.1

Q ss_pred             HhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-
Q 042690           19 VFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-   81 (266)
Q Consensus        19 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-   81 (266)
                      +...+++|++.+.||+|++|.||+|... .++..+|+|.+.                .+++.++||||+++++++.... 
T Consensus         7 ~~~~~~~y~~~~~lg~g~~~~v~~~~~~-~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~   85 (310)
T cd07865           7 FCDEVSKYEKLAKIGQGTFGEVFKARHK-KTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKAT   85 (310)
T ss_pred             ccchhhheEEEEEeecCCCEEEEEEEEC-CCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccc
Confidence            3456778999999999999999999976 678889998653                3677889999999999986543 


Q ss_pred             -------eEEEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           82 -------CRLLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        82 -------~~~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                             ..++||||+.+ +|.+++.... .++      +..++..++.++|.++++|.     ||+++.++.++|+|||
T Consensus        86 ~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          86 PYNRYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             cccCCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCC
Confidence                   45999999975 8888776432 233      34566677788888888887     8999999999999999


Q ss_pred             cceeeccccc---cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc--------------
Q 042690          143 LAKLLMINQT---QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------------  204 (266)
Q Consensus       143 ~a~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------------  204 (266)
                      ++........   .......++..|+|||.+.+. .++.++|+||||+++|+|++|..||......              
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT  244 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            9976542221   112234567889999987654 3688999999999999999999887542210              


Q ss_pred             ---------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ---------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ---------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                       .....+.+++.+||..||.+||+++++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         245 PEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             hhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence                                             01234457999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.97  E-value=1.2e-30  Score=220.84  Aligned_cols=203  Identities=19%  Similarity=0.179  Sum_probs=162.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|...+.||+|++|.||+|... .++..|++|.+.                 ++++.++|||++++++++......++||
T Consensus        16 ~y~~~~~lg~g~~g~vy~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          16 LFTDLREIGHGSFGAVYFARDV-RTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhheeecCCCCeEEEEEEEc-CCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            5778899999999999999975 567889988653                 2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+ ++.+++... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++......     
T Consensus        95 e~~~g-~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~-----  168 (307)
T cd06607          95 EYCLG-SASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA-----  168 (307)
T ss_pred             HhhCC-CHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC-----
Confidence            99975 777776532 2333      34556667788888887776     899999999999999998764321     


Q ss_pred             ccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~  215 (266)
                      ....++..|+|||.+.   ...++.++||||||+++|+|+||..|+....                 .......+.+++.
T Consensus       169 ~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  248 (307)
T cd06607         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVD  248 (307)
T ss_pred             CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHH
Confidence            2345678999999874   3457889999999999999999999876411                 1123456789999


Q ss_pred             HhhhcCCCCCCCHHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~  234 (266)
                      +||+.+|.+||++.+++..
T Consensus       249 ~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         249 SCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             HHhcCChhhCcCHHHHhcC
Confidence            9999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.97  E-value=5.7e-31  Score=219.27  Aligned_cols=208  Identities=17%  Similarity=0.227  Sum_probs=170.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcC-CCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAH-HKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~-h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +|.+.+.||.|++|.||++... .++..+++|...                 ++++.++ ||||+++++++...+..++|
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEK-ETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEc-CCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            6889999999999999999976 578889988653                 2566777 99999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc---
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT---  152 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~---  152 (266)
                      |||+++++|.+++.....+.      +..++..++..+|..++.|.     ||+++.++.++|+|||++........   
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~  160 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPES  160 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCcccccc
Confidence            99999999999998765543      44556666688888888877     89999999999999999886542221   


Q ss_pred             ----------------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------
Q 042690          153 ----------------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------  201 (266)
Q Consensus       153 ----------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------  201 (266)
                                      .......++..|++||...+..++.++|+||||++++++++|..||...               
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~  240 (280)
T cd05581         161 NKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYS  240 (280)
T ss_pred             CCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCC
Confidence                            1122345678999999988878899999999999999999999998652               


Q ss_pred             CCccccchHHHHHHHhhhcCCCCCCCH----HHHHH
Q 042690          202 SDPKTLEKPVMIAIQFVKEKPPLRPSL----RIVAL  233 (266)
Q Consensus       202 ~~~~~~~~~~~l~~~cl~~~p~~Rps~----~~il~  233 (266)
                      .+......+.+++.+||+.+|.+||++    +++++
T Consensus       241 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         241 FPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             CCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence            123345677899999999999999999    77664

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.6e-30  Score=217.31  Aligned_cols=206  Identities=19%  Similarity=0.299  Sum_probs=164.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +|++.+.||+|++|.||+|.+. .++..+++|.+.               .+++.++||||+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNR-TTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEEC-CCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEec
Confidence            4788999999999999999985 568889998653               477788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           90 MHNRSISSLLYECL---RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~---~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      +.+ +|.+++....   .+.      +..++..++.++|..+++|+     ||++++++.++|+|||++...... ....
T Consensus        80 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~-~~~~  157 (284)
T cd07836          80 MDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIP-VNTF  157 (284)
T ss_pred             CCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCC-cccc
Confidence            985 8998887543   223      44556667788888888887     899999999999999999754321 1122


Q ss_pred             ccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------------
Q 042690          156 TGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------------  203 (266)
                      ....++..|++||.+.+. .++.++|+||||+++|+|++|+.||.....                               
T Consensus       158 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07836         158 SNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPT  237 (284)
T ss_pred             ccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhccc
Confidence            234568889999987654 468899999999999999999998864221                               


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++.+|++.||.+||++.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         238 FPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             ccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                         122355668999999999999999999874

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.6e-30  Score=218.60  Aligned_cols=206  Identities=17%  Similarity=0.251  Sum_probs=161.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC-CCceeeeeeEEEeCCe-----
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH-HKNLVCLLGYHIEQEC-----   82 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~-h~~iv~~~~~~~~~~~-----   82 (266)
                      +|++.+.||+|+||.||+|.+. .++..|++|...                .+++.+. ||||+++++++.....     
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~-~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDK-NTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CceEeeEecccCCeEEEEEEEC-CCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            6888999999999999999986 678889999754                2556664 6999999999876655     


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC-----C------CCHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcce
Q 042690           83 RLLVYKFMHNRSISSLLYECL-----R------PTWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAK  145 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~-----~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~  145 (266)
                      .+++|||+.+ +|.+++....     .      ..+..++..++.++|..+++|+     ||+++. ++.++|+|||++.
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~  159 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGR  159 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccce
Confidence            8999999986 8988886432     1      2344556667788888888887     899998 8999999999997


Q ss_pred             eeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------  203 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------  203 (266)
                      ..... ........+++.|+|||.+.+ ..++.++|+||||+++|+|++|..||.....                     
T Consensus       160 ~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (295)
T cd07837         160 AFSIP-VKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPG  238 (295)
T ss_pred             ecCCC-ccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcc
Confidence            65322 112223356788999998764 4578899999999999999999988854211                     


Q ss_pred             ----------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ----------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ----------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                            +.....+.+++.+||..||.+||++++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         239 VSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                                  224456778999999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=2.5e-30  Score=215.86  Aligned_cols=203  Identities=17%  Similarity=0.222  Sum_probs=159.8

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------Hhhhc-CCCceeeeeeEEEeC--CeEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVA-HHKNLVCLLGYHIEQ--ECRLLVY   87 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------~l~~~-~h~~iv~~~~~~~~~--~~~~lv~   87 (266)
                      |.+.+.||+|++|.||+|... .++..+++|.+..               .++.+ +|+|++++++++.++  +..++||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~-~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSR-KTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEc-CCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEE
Confidence            567889999999999999975 5778899987652               34455 499999999999887  8899999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+ +|.+++... ..+.      +..++..++.++|..+++|+     ||+++. +.++|+|||++.......  ..
T Consensus        80 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~--~~  155 (282)
T cd07831          80 ELMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKP--PY  155 (282)
T ss_pred             ecCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCC--Cc
Confidence            99975 888888653 2333      33455566688888888887     899999 999999999998654221  22


Q ss_pred             ccccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------------
Q 042690          156 TGMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------------  203 (266)
                      ....++..|+|||.+. +..++.++|+||+|+++|+|++|..||.....                               
T Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07831         156 TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYN  235 (282)
T ss_pred             CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhccccccccc
Confidence            2345788999999764 44578899999999999999999998864211                               


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +..+..+.+++.+||+.+|.+||+++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         236 FPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             CcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence                         123467788999999999999999999885

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.97  E-value=1.2e-30  Score=216.77  Aligned_cols=213  Identities=20%  Similarity=0.264  Sum_probs=165.5

Q ss_pred             eeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC------
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE------   81 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~------   81 (266)
                      |.+.+.||+|+||.||+|.+..  +.+..+++|.+.                ..++.++||||+++++++....      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            4567899999999999998742  356789998553                3677889999999999886532      


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           82 CRLLVYKFMHNRSISSLLYECL------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                      ..++++||+.+++|.+++....      .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~  160 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLS  160 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECccccc
Confidence            2478899999999998875321      1      2244556666788888888887     899999999999999999


Q ss_pred             eeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------Cccc
Q 042690          145 KLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKT  206 (266)
Q Consensus       145 ~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~  206 (266)
                      +........ ......++..|++||.+.+..++.++|+||||+++|+|++ |+.||....                ++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  240 (273)
T cd05074         161 KKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDC  240 (273)
T ss_pred             ccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCcCCCCCCC
Confidence            865322211 1122334578999999888888999999999999999999 777875421                2234


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      ...+.+++.+|++.+|+.||++.++++.|+.+
T Consensus       241 ~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         241 LEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            46788999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.97  E-value=2.7e-30  Score=219.61  Aligned_cols=213  Identities=19%  Similarity=0.178  Sum_probs=167.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|...+.||+|+||.||++.+. .++..+++|.+.                 ..++.++|||++++++++..+...++||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~-~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDV-RTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEc-CCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            4778889999999999999975 567788888753                 2567789999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+ +|.+.+... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....     .
T Consensus       105 e~~~g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~-----~  178 (317)
T cd06635         105 EYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP-----A  178 (317)
T ss_pred             eCCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCC-----c
Confidence            99975 787777543 2333      33445566678888888777     89999999999999999865431     1


Q ss_pred             ccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~  215 (266)
                      ....++..|+|||.+.   +..++.++|+||||+++|+|++|..||....                 .......+.+++.
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  258 (317)
T cd06635         179 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVD  258 (317)
T ss_pred             ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCCCCccccHHHHHHHH
Confidence            2345788999999863   4567889999999999999999999875521                 1223456788999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      +||+.+|.+||++.++++.+--....+..
T Consensus       259 ~~l~~~p~~Rpt~~~il~~~~~~~~~~~~  287 (317)
T cd06635         259 SCLQKIPQDRPTSEELLKHMFVLRERPET  287 (317)
T ss_pred             HHccCCcccCcCHHHHHhChhhhccCccc
Confidence            99999999999999999876655554444

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.97  E-value=2.4e-30  Score=217.70  Aligned_cols=210  Identities=14%  Similarity=0.061  Sum_probs=160.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH-------------------------HHhhhcCCCceeeeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD-------------------------KVVHVAHHKNLVCLLG   75 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~-------------------------~~l~~~~h~~iv~~~~   75 (266)
                      ..|++.+.||+|+||+||+|.+. ++   +..+++|...                         ..++.+.|+|++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~-~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCA-SDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEc-CCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            47999999999999999999975 33   4456666432                         0233568999999999


Q ss_pred             EEEeCC----eEEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEee
Q 042690           76 YHIEQE----CRLLVYKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSD  140 (266)
Q Consensus        76 ~~~~~~----~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~D  140 (266)
                      ++....    ..++++|++.. ++.+.+.....      ..+..++..++.++|..+++|+     ||+++.++.++|+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~D  169 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIID  169 (294)
T ss_pred             eeeEecCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEE
Confidence            865543    34678888754 77766654322      2355677777788888888887     89999999999999


Q ss_pred             cCcceeeccccc------cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------
Q 042690          141 LGLAKLLMINQT------QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------  202 (266)
Q Consensus       141 fg~a~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------  202 (266)
                      ||+++.......      .......||+.|+|||+..+..++.++||||||+++++|++|+.||....            
T Consensus       170 FGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~  249 (294)
T PHA02882        170 YGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCD  249 (294)
T ss_pred             cCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHH
Confidence            999987642211      11122468999999999998889999999999999999999999997531            


Q ss_pred             -----------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 042690          203 -----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALML  235 (266)
Q Consensus       203 -----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l  235 (266)
                                 .+.....+.+++..|++.+|.+||++.++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        250 FIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence                       122345577899999999999999999999876

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.4e-30  Score=223.18  Aligned_cols=215  Identities=16%  Similarity=0.249  Sum_probs=169.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC-----CeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~-----~~~   83 (266)
                      +|.+.+.||+|++|.||++... .++..|++|.+.                .+++.++|+||+++++++...     ...
T Consensus         6 ~y~~~~~lg~G~~~~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           6 KYVPIKPIGRGAYGIVCSAKNS-ETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             ceeEEEEeccCCCeEEEEEEec-CCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            6899999999999999999975 678889999754                367788999999999987654     347


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +++|||+. ++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++....... 
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-  162 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKG-  162 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCc-
Confidence            99999996 59999987655543      44556666788888888877     8999999999999999998654221 


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                      .......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||....                             
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (337)
T cd07858         163 DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKAR  242 (337)
T ss_pred             ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhh
Confidence            22233457889999998764 458899999999999999999999885321                             


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhCC
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEVP  242 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~~  242 (266)
                                       .+.....+.+++.+||+.+|.+||+++++++.  +..+....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~  301 (337)
T cd07858         243 RYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPS  301 (337)
T ss_pred             HHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcc
Confidence                             12234566789999999999999999999866  66654443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=220.62  Aligned_cols=208  Identities=17%  Similarity=0.227  Sum_probs=163.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCC-CcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeC--CeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPG-DKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~-~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~--~~~~   84 (266)
                      +|.+.+.||+|++|.||+|.+... .+..+|+|.+..                 +++.++||||+++++++...  ...+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            477889999999999999998632 688999987652                 67788999999999999887  7899


Q ss_pred             EEEEcCCCCCHHHHHhhcC-----C------CCHHHHHHHHHHHhhhcCcccc-----ceeecC----CCEEEEeecCcc
Q 042690           85 LVYKFMHNRSISSLLYECL-----R------PTWQQRMQDCIRDCWRTRALAC-----RILLHD----YFTVETSDLGLA  144 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-----~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~----~~~~~l~Dfg~a  144 (266)
                      +||||+++ +|.+++....     .      ..+..++..++.++|..+++|+     ||+++.    ++.++|+|||++
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            99999976 7777775322     1      1344567777788888888887     899999    899999999999


Q ss_pred             eeeccccc--cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc-----------------
Q 042690          145 KLLMINQT--QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP-----------------  204 (266)
Q Consensus       145 ~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-----------------  204 (266)
                      ........  .......++..|+|||.+.+. .++.++|+||||+++++|++|+.||......                 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (316)
T cd07842         160 RLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFE  239 (316)
T ss_pred             cccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHH
Confidence            86542222  122234568889999987654 5788999999999999999999988642111                 


Q ss_pred             --------------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 --------------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 --------------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                  .....+.+++.+||+.||.+||++.++++
T Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         240 VLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                                                        22345678999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.97  E-value=1.7e-30  Score=218.41  Aligned_cols=203  Identities=16%  Similarity=0.201  Sum_probs=164.7

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ...||+|++|.||++... .++..+++|++.              ..++.++|+|++++++.+......+++|||+++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  103 (292)
T cd06657          25 FIKIGEGSTGIVCIATVK-SSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGA  103 (292)
T ss_pred             HHHcCCCCCeEEEEEEEc-CCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCc
Confidence            468999999999999976 578889998753              26778899999999999999999999999999999


Q ss_pred             HHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCc
Q 042690           95 ISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGY  164 (266)
Q Consensus        95 L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y  164 (266)
                      |.+++.....     ..+..++..++.++|..+++|.     ||+++.++.++|+|||++...... ........++..|
T Consensus       104 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~y  182 (292)
T cd06657         104 LTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-VPRRKSLVGTPYW  182 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccc-cccccccccCccc
Confidence            9998854321     2344566666788888787777     899999999999999998765321 1122334578899


Q ss_pred             CCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcCCCCCC
Q 042690          165 LPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       165 ~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                      ++||.+.+..++.++|+||+|+++|+|++|..||....                  .......+.+++.+||+.+|.+||
T Consensus       183 ~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~  262 (292)
T cd06657         183 MAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRA  262 (292)
T ss_pred             cCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCc
Confidence            99999888888999999999999999999999986421                  112345677899999999999999


Q ss_pred             CHHHHHH
Q 042690          227 SLRIVAL  233 (266)
Q Consensus       227 s~~~il~  233 (266)
                      ++.++++
T Consensus       263 ~~~~ll~  269 (292)
T cd06657         263 TAAELLK  269 (292)
T ss_pred             CHHHHhc
Confidence            9999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=3.7e-30  Score=214.82  Aligned_cols=199  Identities=19%  Similarity=0.160  Sum_probs=159.4

Q ss_pred             ccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------HhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           31 KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------VVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .||+|+||.||++... .+++.||+|.+..                    .++...||+|+++++++......++||||+
T Consensus         1 ~ig~g~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKA-DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEe-cCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecC
Confidence            4799999999999875 5678899996531                    233457999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           91 HNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        91 ~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      .+++|.+++.....+.+      ..++..++.++|..+++|+     ||+++.++.++|+|||++......   ......
T Consensus        80 ~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~  156 (278)
T cd05606          80 NGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK---KPHASV  156 (278)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCcc---CCcCcC
Confidence            99999999976655443      3455566678887777777     899999999999999998754321   222346


Q ss_pred             CCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          160 ETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       160 ~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      ++..|+|||.+.+. .++.++|+||+|+++|+|++|+.||....                  +......+.+++.+|+..
T Consensus       157 ~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~  236 (278)
T cd05606         157 GTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQR  236 (278)
T ss_pred             CCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhc
Confidence            88999999998744 58899999999999999999999986521                  122346778999999999


Q ss_pred             CCCCCC-----CHHHHHH
Q 042690          221 KPPLRP-----SLRIVAL  233 (266)
Q Consensus       221 ~p~~Rp-----s~~~il~  233 (266)
                      +|.+||     ++.++++
T Consensus       237 ~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         237 DVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CHHhccCCCCCCHHHHHh
Confidence            999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=8.8e-31  Score=215.35  Aligned_cols=205  Identities=21%  Similarity=0.276  Sum_probs=168.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||++.+. .++..+++|.+.                +.++.++|+||+++++++......++|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRL-SDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             CceEeeeecCCCceeEEEEEEC-CCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEeh
Confidence            4788999999999999999875 577788888754                26678899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           89 FMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        89 ~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      |+++++|.+++...    ..+.      +..++..++..+|..++.|.     ||+++.++.++|+|||++......   
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~---  156 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKN---  156 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccC---
Confidence            99999999998752    2233      33456666678887777776     899999999999999999775432   


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~c  217 (266)
                      ......++..|++||.+.+..++.++|+||||+++++|++|+.||....                +......+.+++.+|
T Consensus       157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  236 (256)
T cd08530         157 MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSM  236 (256)
T ss_pred             CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCchhhCHHHHHHHHHH
Confidence            2223457889999999988888999999999999999999999986522                122345678999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      ++.+|.+||++.++++
T Consensus       237 l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         237 LQVKPKLRPNCDKILA  252 (256)
T ss_pred             cCCCcccCCCHHHHhc
Confidence            9999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.97  E-value=2.8e-30  Score=216.28  Aligned_cols=209  Identities=18%  Similarity=0.212  Sum_probs=168.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ...|...+.||+|++|.||++.+. .++..+++|.+.             +.++.++|+|++++++.+......++++||
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDR-ATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEc-cCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEec
Confidence            345778889999999999999985 467788888654             367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++++|.+++.... .+++.      .++..++..+|..++.|.     ||+++.++.++|+|||++....... .....
T Consensus        97 ~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~-~~~~~  175 (286)
T cd06614          97 MDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEK-SKRNS  175 (286)
T ss_pred             cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccch-hhhcc
Confidence            99999999998765 44433      445555677777777776     8999999999999999987543221 12223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------ccccchHHHHHHHhhh
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------PKTLEKPVMIAIQFVK  219 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~~~~~~~~~l~~~cl~  219 (266)
                      ..++..|++||.+.+..++.++|+||||+++|+|++|..|+....+                  ......+.+++.+||+
T Consensus       176 ~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  255 (286)
T cd06614         176 VVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLV  255 (286)
T ss_pred             ccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhc
Confidence            4567899999998888899999999999999999999998765211                  1134567889999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .+|..||++.++++
T Consensus       256 ~~p~~Rpt~~~il~  269 (286)
T cd06614         256 KDPEKRPSAEELLQ  269 (286)
T ss_pred             cChhhCcCHHHHhh
Confidence            99999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=4.7e-30  Score=213.03  Aligned_cols=203  Identities=15%  Similarity=0.189  Sum_probs=161.8

Q ss_pred             ceeeeecc--CCCcceEEEEEEEcCCCcceeeeeeHHH---------Hhhhc-CCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           25 HIYSLKKP--CGGSFSTVYTGVLAPGDKTNIGVKKLDK---------VVHVA-HHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        25 ~~~~~~~i--g~G~~g~V~~~~~~~~~~~~vaiK~~~~---------~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      .|.+.+.+  |+|+||.||++..+ .++..+++|....         ....+ +|||++++++.+..++..++||||+++
T Consensus        15 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~   93 (267)
T PHA03390         15 NCEIVKKLKLIDGKFGKVSVLKHK-PTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKD   93 (267)
T ss_pred             hhccccceeecCCCceEEEEEEEc-CCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCC
Confidence            45555555  99999999999976 5677888887652         11222 699999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeeccccccccccccC
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      ++|.+++.....+.      +..++..++..+|..+++|+     ||+++.++ .++|+|||++......     ....+
T Consensus        94 ~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~-----~~~~~  168 (267)
T PHA03390         94 GDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP-----SCYDG  168 (267)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC-----ccCCC
Confidence            99999998765544      33455566688888888877     89999998 9999999998765321     12357


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHHHHhhhcC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~cl~~~  221 (266)
                      +..|+|||.+.+..++.++|+||+|+++|+|++|..||.....                   ......+.+++.+||+.+
T Consensus       169 ~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  248 (267)
T PHA03390        169 TLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYN  248 (267)
T ss_pred             CCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccC
Confidence            8899999999888899999999999999999999999864211                   124566778999999999


Q ss_pred             CCCCCC-HHHHHH
Q 042690          222 PPLRPS-LRIVAL  233 (266)
Q Consensus       222 p~~Rps-~~~il~  233 (266)
                      |.+||+ ++++++
T Consensus       249 p~~R~~~~~~~l~  261 (267)
T PHA03390        249 INYRLTNYNEIIK  261 (267)
T ss_pred             hhhCCchHHHHhc
Confidence            999996 588874

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=5.4e-33  Score=218.84  Aligned_cols=207  Identities=17%  Similarity=0.199  Sum_probs=161.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .+.+.+..||.|+||+|+|-.++ ..++..|+|+++.                .++.-+.||||++||....++..|+-|
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk-~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCM  142 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHK-PSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICM  142 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcC-ccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeH
Confidence            35667789999999999999987 6788999999872                444556899999999999999999999


Q ss_pred             EcCCCCCHHHHHhh---cCCCCHHH------------HHHHHH--HHhhhcCccccceeecCCCEEEEeecCcceeeccc
Q 042690           88 KFMHNRSISSLLYE---CLRPTWQQ------------RMQDCI--RDCWRTRALACRILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        88 e~~~~~~L~~~l~~---~~~~~~~~------------~l~~~~--~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      |.|.- ||..+.+.   -+...+.+            .+-.+.  ..++|+++.++|||++..|.+||||||++..+.. 
T Consensus       143 ELMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~-  220 (361)
T KOG1006|consen  143 ELMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVD-  220 (361)
T ss_pred             HHHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHH-
Confidence            99965 77765542   11111111            111111  4567889999999999999999999999987653 


Q ss_pred             cccccccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhCCCcccC-------------CCC---------ccc
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISCRCVERQ-------------GSD---------PKT  206 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg~~p~~~-------------~~~---------~~~  206 (266)
                       +...+.-.|...|||||.+...  .|+.+||+||||++++|+.||..|++.             +.+         ...
T Consensus       221 -SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~  299 (361)
T KOG1006|consen  221 -SIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHY  299 (361)
T ss_pred             -HHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCccccccc
Confidence             2333445688999999988643  488999999999999999999999987             222         225


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ...+..++..|+.-|-..||+..++...
T Consensus       300 s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  300 SFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             CHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            5678889999999999999999988654

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=222.87  Aligned_cols=213  Identities=18%  Similarity=0.249  Sum_probs=166.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC-----CeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~-----~~~   83 (266)
                      ++|.+.+.||+|++|.||+|.+. .++..|++|.+.               .+++.++||||+++++++...     ...
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHK-PTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEc-CCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            47999999999999999999975 678889999753               267788999999999987643     357


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++++||+.+ +|.+++... .+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++........
T Consensus        84 ~lv~e~~~~-~l~~~~~~~-~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~  161 (336)
T cd07849          84 YIVQELMET-DLYKLIKTQ-HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHD  161 (336)
T ss_pred             EEEehhccc-CHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecccccc
Confidence            899999975 888887542 333      34556677788888888887     89999999999999999976532221


Q ss_pred             c--ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------
Q 042690          153 Q--TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------  202 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------  202 (266)
                      .  ......++..|+|||.+.+ ..++.++|+||+|+++|+|++|+.||....                           
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (336)
T cd07849         162 HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLR  241 (336)
T ss_pred             ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchh
Confidence            1  1123567889999997654 467889999999999999999999885321                           


Q ss_pred             -------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHH
Q 042690          203 -------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSIL  239 (266)
Q Consensus       203 -------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~  239 (266)
                                         .+.....+.+++.+||+.+|.+||++.++++.  ++...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         242 ARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             hhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence                               01234567789999999999999999999875  55443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=1.9e-30  Score=217.46  Aligned_cols=214  Identities=16%  Similarity=0.161  Sum_probs=168.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH------------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD------------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~------------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      +|.+.+.||+|++|.||++...  ..++..+++|.+.                  .++..+ +||||+++++.+..+...
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            3778899999999999999863  2356778888653                  245566 599999999999988999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+.+++|.+++.....+.      +..++..++..+|..+++|.     ||+++.++.++|+|||++........
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  160 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEE  160 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccc
Confidence            99999999999999987654433      33456666788888887776     89999999999999999876543322


Q ss_pred             cccccccCCCCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPV  211 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~  211 (266)
                      .......++..|++||.+.+..  .+.++|+||||+++|+|++|..||....                   +......+.
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (288)
T cd05583         161 ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFPKTMSAEAR  240 (288)
T ss_pred             cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHccCCCCCcccCHHHH
Confidence            2223345788999999877654  6789999999999999999999985311                   122345678


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      +++.+||+.+|+.||++.++.+.|+..
T Consensus       241 ~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         241 DFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             HHHHHHhcCCHhhccCcchHHHHhcCc
Confidence            899999999999999988887766654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=216.09  Aligned_cols=228  Identities=18%  Similarity=0.213  Sum_probs=180.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++.+|++++.||.|.-|+||++..+ +.+..+|+|++.                 ++|+.++||.++.+|+.++++...+
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~-~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~c  153 (459)
T KOG0610|consen   75 GLRHFRLLKRLGCGDIGTVYLVELR-GTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSC  153 (459)
T ss_pred             CHHHHHHHHHcCCCCceeEEEEEec-CCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeE
Confidence            4567999999999999999999987 677899999886                 3888999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcc-----ccceeecCCCEEEEeecCcceeeccc-
Q 042690           85 LVYKFMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRAL-----ACRILLHDYFTVETSDLGLAKLLMIN-  150 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~-----h~nili~~~~~~~l~Dfg~a~~~~~~-  150 (266)
                      ++||||.||+|+...+...  ++      .+...+..++.++|-+|++     +.||||.++|.+.|+||.++...... 
T Consensus       154 l~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~P  233 (459)
T KOG0610|consen  154 LVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSP  233 (459)
T ss_pred             EEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCC
Confidence            9999999999999887422  22      3556677788888888766     45999999999999999997643100 


Q ss_pred             -------------------------------c-c----------------------cccccccCCCCcCCccccCCCCCC
Q 042690          151 -------------------------------Q-T----------------------QTLTGMRETKGYLPPEWFRNMPVT  176 (266)
Q Consensus       151 -------------------------------~-~----------------------~~~~~~~~~~~y~aPE~~~~~~~~  176 (266)
                                                     . .                      .......||-.|+|||++.|..-+
T Consensus       234 t~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHg  313 (459)
T KOG0610|consen  234 TLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHG  313 (459)
T ss_pred             eeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCC
Confidence                                           0 0                      011225799999999999999999


Q ss_pred             cccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHHHhhhcCCCCCCC----HHHHHH--
Q 042690          177 VKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKPPLRPS----LRIVAL--  233 (266)
Q Consensus       177 ~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p~~Rps----~~~il~--  233 (266)
                      .+.|-|+||+.+|||+.|..||.+..                 .+..+....++|++.|.-||.+|-.    +.||-+  
T Consensus       314 sAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~Hp  393 (459)
T KOG0610|consen  314 SAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHP  393 (459)
T ss_pred             chhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCc
Confidence            99999999999999999999998822                 2234467788999999999999976    566522  


Q ss_pred             -------HHHHHHhCCCCCCCccc
Q 042690          234 -------MLQSILEVPSPPCSFAF  250 (266)
Q Consensus       234 -------~l~~~~~~~~~~~~~~~  250 (266)
                             .|.....+|..|.+...
T Consensus       394 FF~gVnWaLir~~~PP~iP~~~d~  417 (459)
T KOG0610|consen  394 FFEGVNWALIRCARPPEIPKPVDG  417 (459)
T ss_pred             cccCCChhheeccCCCcCCCcccc
Confidence                   14444555554544444

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.97  E-value=2.4e-30  Score=218.11  Aligned_cols=209  Identities=19%  Similarity=0.291  Sum_probs=164.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ..+|.+.+.||+|++|.||+|.+. .++..+++|.+.                ++++.++|||++++++++.+..     
T Consensus         6 ~~~~~~~~~lg~g~~g~v~~~~~~-~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           6 VDKFDIIGQIGEGTYGQVYKARDK-DTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhheeeeecccCCEEEEEEEEC-CCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            457889999999999999999986 567788888774                3677889999999999987644     


Q ss_pred             -----eEEEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           82 -----CRLLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        82 -----~~~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                           ..++|+||+.+ ++.+.+.... .+      .+..++..++.++|..+++|+     ||++++++.++|+|||++
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~  163 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA  163 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccccc
Confidence                 78999999986 7777776432 23      344566677788888888887     799999999999999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------  203 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------  203 (266)
                      ...............++..|+|||.+.+ ..++.++|+||||+++++|++|+.||.....                    
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (302)
T cd07864         164 RLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWP  243 (302)
T ss_pred             ccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcc
Confidence            8654322222233445778999998764 3578899999999999999999988853110                    


Q ss_pred             -------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                               ......+.+++.+||..+|.+||++++++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         244 DVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             cccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                                     113456788999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=5.5e-30  Score=214.89  Aligned_cols=209  Identities=17%  Similarity=0.150  Sum_probs=164.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH------------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD------------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~------------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      .|++.+.||+|+||.||++....  .++..+|+|.+.                  .+++.+ +|+||+++++++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            36788999999999999998742  367889999764                  255666 589999999999988899


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++++|.+++.....+...      .++..++..+|..+++|+     ||+++.++.++|+|||++........
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  160 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV  160 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc
Confidence            9999999999999999866554432      356666688888888887     89999999999999999987543332


Q ss_pred             cccccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhCCCcccCC-------------------CCccccchHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISCRCVERQG-------------------SDPKTLEKPV  211 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------------~~~~~~~~~~  211 (266)
                      .......++..|+|||.+.+.  .++.++|+||||+++|+|++|..||...                   .+......+.
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (290)
T cd05613         161 ERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAK  240 (290)
T ss_pred             cccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccCCCCCccCCHHHH
Confidence            333345678899999987643  4678899999999999999999998531                   1122345577


Q ss_pred             HHHHHhhhcCCCCCC-----CHHHHHH
Q 042690          212 MIAIQFVKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rp-----s~~~il~  233 (266)
                      +++.+||+.+|.+||     ++++++.
T Consensus       241 ~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         241 DIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             HHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence            899999999999997     5666654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=8.6e-32  Score=212.95  Aligned_cols=215  Identities=17%  Similarity=0.204  Sum_probs=178.8

Q ss_pred             hhhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhc-CCCceee
Q 042690           16 ENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVA-HHKNLVC   72 (266)
Q Consensus        16 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~-~h~~iv~   72 (266)
                      .....+.+.+|+-.+.||.|..+.|-+..++ .++..+|+|++.                      .+++++ .||+|++
T Consensus         9 ~~aa~~fy~~y~pkeilgrgvss~vrRci~k-~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~   87 (411)
T KOG0599|consen    9 KDAAKGFYAKYEPKEILGRGVSSVVRRCIHK-ETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIID   87 (411)
T ss_pred             hhhHhhHHhhcChHHHhcccchhhhhhhhhc-ccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence            3344566778999999999999999988876 667778887765                      266665 5999999


Q ss_pred             eeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           73 LLGYHIEQECRLLVYKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        73 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      +.|+++++.-.++|+|.|+.|.|.+++.+.-.      ..+++++...+.++|..+++|+     |||++++.+++|+||
T Consensus        88 l~D~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDF  167 (411)
T KOG0599|consen   88 LQDVYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDF  167 (411)
T ss_pred             eeeeccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEecc
Confidence            99999999999999999999999999986544      4567778888888888888887     999999999999999


Q ss_pred             CcceeeccccccccccccCCCCcCCccccCC------CCCCcccchhhHHHHHHHHHhCCCcccC------------C--
Q 042690          142 GLAKLLMINQTQTLTGMRETKGYLPPEWFRN------MPVTVKVDVYSFGVMLLEIISCRCVERQ------------G--  201 (266)
Q Consensus       142 g~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~i~~~l~tg~~p~~~------------~--  201 (266)
                      |++..+.  .+......+||++|+|||.+..      ..|+...|+||+|+|+|.|+.|.+||-.            +  
T Consensus       168 GFa~~l~--~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGky  245 (411)
T KOG0599|consen  168 GFACQLE--PGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKY  245 (411)
T ss_pred             ceeeccC--CchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhccc
Confidence            9998875  3445556789999999998752      2478889999999999999999999865            1  


Q ss_pred             -----CCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          202 -----SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       202 -----~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                           .=.+.+....+++.+||+.||.+|-|++|.|+
T Consensus       246 qF~speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  246 QFRSPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             ccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence                 11245567788999999999999999999875

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-31  Score=222.13  Aligned_cols=219  Identities=19%  Similarity=0.229  Sum_probs=167.4

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------------HhhhcCCCceeeeeeEEEeCC----eE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQE----CR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------------~l~~~~h~~iv~~~~~~~~~~----~~   83 (266)
                      .+...+++++.||+|.||.||||..   +++.||||++..             .+-.++|+||++++++.....    .+
T Consensus       207 ~~l~pl~l~eli~~Grfg~V~KaqL---~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  207 LELDPLQLLELIGRGRFGCVWKAQL---DNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEY  283 (534)
T ss_pred             ccCCchhhHHHhhcCccceeehhhc---cCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccce
Confidence            3466788899999999999999998   669999998863             233678999999999986554    79


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHH------HHh--------------hhcCccccceeecCCCEEEEeecCc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPTWQQRMQDCI------RDC--------------WRTRALACRILLHDYFTVETSDLGL  143 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~------~~~--------------~~~~~~h~nili~~~~~~~l~Dfg~  143 (266)
                      |||+||.+.|+|.+|++.+ ..+|...+.++.      .++              .|+++..+||||.+|+++.|+|||+
T Consensus       284 wLVt~fh~kGsL~dyL~~n-tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGL  362 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKAN-TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGL  362 (534)
T ss_pred             eEEeeeccCCcHHHHHHhc-cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccce
Confidence            9999999999999999864 356666555554      222              2334444499999999999999999


Q ss_pred             ceeecccccc-ccccccCCCCcCCccccCCCC-C-----CcccchhhHHHHHHHHHhCCCcccCCCCc------------
Q 042690          144 AKLLMINQTQ-TLTGMRETKGYLPPEWFRNMP-V-----TVKVDVYSFGVMLLEIISCRCVERQGSDP------------  204 (266)
Q Consensus       144 a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~-~-----~~~~Di~slG~i~~~l~tg~~p~~~~~~~------------  204 (266)
                      |..+...... ......||.+|||||++.+.. +     -.+.||||+|.++||++++...+..+.++            
T Consensus       363 Al~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~  442 (534)
T KOG3653|consen  363 ALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGN  442 (534)
T ss_pred             eEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcC
Confidence            9987644333 223488999999999987643 2     24699999999999999987643211111            


Q ss_pred             ---------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          205 ---------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       205 ---------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                                                 .....+.+.+..||+.||+.|-|+.-+.+.+..+....+
T Consensus       443 hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  443 HPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             CCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence                                       122344568999999999999999988888877766544

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.97  E-value=1.4e-29  Score=208.10  Aligned_cols=208  Identities=18%  Similarity=0.225  Sum_probs=170.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~~lv   86 (266)
                      +|...+.||+|++|.||+|... .++..+++|...                ..++.++||||+++++.+...  ...+++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDK-DTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             CceeeeEeeecCceEEEEEEEC-CCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEE
Confidence            3677889999999999999985 467788888653                367788999999999999888  889999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-c
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-T  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~  154 (266)
                      |||+.+++|.+++.....++      +..++..++.++|..++.|.     ||+++.++.++|+|||.+......... .
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  159 (260)
T cd06606          80 LEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEG  159 (260)
T ss_pred             EEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccccccccc
Confidence            99999999999998765544      44556666677887787776     899999999999999999876533221 1


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~  216 (266)
                      .....++..|++||...+...+.++|+||||+++++|++|..||....                  +......+.+++.+
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~  239 (260)
T cd06606         160 TGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRK  239 (260)
T ss_pred             ccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccccCCCcCCCcccCHHHHHHHHH
Confidence            234567889999999888778999999999999999999999986522                  22345678899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      |++.+|.+||++.++++
T Consensus       240 ~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         240 CLRRDPKKRPTADELLQ  256 (260)
T ss_pred             hCcCChhhCCCHHHHhh
Confidence            99999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=2.1e-30  Score=221.88  Aligned_cols=215  Identities=16%  Similarity=0.247  Sum_probs=168.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe----CCeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE----QECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~----~~~~   83 (266)
                      .+|.+.+.||+|++|.||+|... .++..|++|++.                .+++.++||||+++++++..    ....
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~-~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDT-RSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEc-CCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            47888999999999999999976 568889998764                37778899999999998753    3468


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+. ++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  162 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPT  162 (334)
T ss_pred             EEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCc
Confidence            99999996 59999987655544      33556666788888888887     89999999999999999976542221


Q ss_pred             c---ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          153 Q---TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       153 ~---~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      .   ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||.....                         
T Consensus       163 ~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  242 (334)
T cd07855         163 EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSD  242 (334)
T ss_pred             CCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchh
Confidence            1   1123467889999998765 4578999999999999999999999854210                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHh
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILE  240 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~  240 (266)
                                           +.....+.+++.+||+.+|.+||++++++..  ++++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~  302 (334)
T cd07855         243 RVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHD  302 (334)
T ss_pred             hHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccC
Confidence                                 2234667789999999999999999998853  444433

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.97  E-value=1.3e-30  Score=218.36  Aligned_cols=207  Identities=17%  Similarity=0.164  Sum_probs=158.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcC-CCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAH-HKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .+|...+.||+|+||.||++.+. .++..+|+|.+.               ..+.++. ||||+++++++..+...+++|
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~   82 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHK-PSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICM   82 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEEC-CCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEE
Confidence            45667789999999999999976 678899999764               1455664 999999999999888999999


Q ss_pred             EcCCCCCHHHHHh---h--cCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           88 KFMHNRSISSLLY---E--CLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        88 e~~~~~~L~~~l~---~--~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ||+.. ++.++..   .  ...+.      +..++..++.++|+. +++|+     ||+++.++.++|+|||++......
T Consensus        83 e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd06616          83 ELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             ecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccC
Confidence            99865 6655432   1  12233      334455556667653 66666     899999999999999998764321


Q ss_pred             cccccccccCCCCcCCccccCCC---CCCcccchhhHHHHHHHHHhCCCcccCCC-------------C--------ccc
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNM---PVTVKVDVYSFGVMLLEIISCRCVERQGS-------------D--------PKT  206 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~---~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------~--------~~~  206 (266)
                        .......++..|+|||.+.+.   .++.++|+||+|+++|+|++|+.||....             .        ...
T Consensus       162 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (288)
T cd06616         162 --IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREF  239 (288)
T ss_pred             --CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCcc
Confidence              122334578899999988765   58899999999999999999999985411             0        113


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ...+.+++.+||+.+|.+||+++++++.
T Consensus       240 ~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         240 SPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            4567899999999999999999999864

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.97  E-value=9.2e-30  Score=209.17  Aligned_cols=207  Identities=20%  Similarity=0.262  Sum_probs=170.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||.|++|.||++.+. .++..+++|++.                +.++.++|||++++.+.+......++++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRK-SDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEc-CCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEE
Confidence            4778899999999999999985 467889998764                36778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           89 FMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        89 ~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      |+++++|.+++...    ..+      .+..++..++..+|..++.|.     |++++.++.++|+|||.+....... .
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-~  158 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV-D  158 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCc-c
Confidence            99999999999764    233      344556666688888887776     8999999999999999998754322 1


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~c  217 (266)
                      ......++..|+|||...+..++.++|+||+|+++++|++|..||....                +......+.+++.+|
T Consensus       159 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  238 (258)
T cd08215         159 LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPPIPSQYSSELRNLVSSL  238 (258)
T ss_pred             eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            2233467889999999888888999999999999999999999986532                123446778899999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |..+|.+||+++++++
T Consensus       239 l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         239 LQKDPEERPSIAQILQ  254 (258)
T ss_pred             cCCChhhCcCHHHHhc
Confidence            9999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-29  Score=207.70  Aligned_cols=207  Identities=15%  Similarity=0.180  Sum_probs=168.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|.+.+.||+|++|.||++... ..+..+++|...                ++++.++|||++++++++.+.+..+++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNL-ETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEc-CCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEe
Confidence            4778899999999999999975 567788888764                25678899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.+++|.+++.....+++      ..++..++..+|..++.|+     ||+++.++.++|+|||.+........ ....
T Consensus        80 ~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~  158 (254)
T cd06627          80 YAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK-DDAS  158 (254)
T ss_pred             cCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcc-cccc
Confidence            9999999999987655443      3455566677788887777     89999999999999999987643222 1223


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHHHHhhhcC
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ..++..|+|||...+...+.++|+||+|+++++|++|..|+....                +......+.+++.+||..+
T Consensus       159 ~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  238 (254)
T cd06627         159 VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKD  238 (254)
T ss_pred             cccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCC
Confidence            457889999998887778899999999999999999999885411                2234467789999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |++||++.+++.
T Consensus       239 p~~R~~~~~~l~  250 (254)
T cd06627         239 PNLRPTAKQLLK  250 (254)
T ss_pred             hhhCcCHHHHhc
Confidence            999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.4e-29  Score=209.65  Aligned_cols=208  Identities=15%  Similarity=0.132  Sum_probs=165.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeC--Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQ--EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~--~~   82 (266)
                      .+|.+.+.||+|++|.||+|.+. .++..+++|.+.                   .+++.++|+||+++++++.+.  ..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   80 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDA-DTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKK   80 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEc-CCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCE
Confidence            36888999999999999999975 678889998642                   367788999999999998764  45


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++++|||+++++|.+++.....+      .+..++..++..+|..+++|+     ||+++.++.++|+|||++.......
T Consensus        81 ~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~  160 (264)
T cd06653          81 LSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTIC  160 (264)
T ss_pred             EEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccccccccc
Confidence            88999999999999999765443      344567777788888888887     8999999999999999997643211


Q ss_pred             --ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHH
Q 042690          152 --TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVM  212 (266)
Q Consensus       152 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~  212 (266)
                        ........++..|+|||.+.+..++.++|+||||+++++|++|+.||...                 .+......+.+
T Consensus       161 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  240 (264)
T cd06653         161 MSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDGVSDACRD  240 (264)
T ss_pred             ccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCcccCHHHHH
Confidence              11112345788999999998888899999999999999999999998651                 12334466778


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+|+. +|..||++.+++.
T Consensus       241 ~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         241 FLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             HHHHHhc-CcccCccHHHHhc
Confidence            9999999 5799999887764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=5.3e-30  Score=219.64  Aligned_cols=215  Identities=20%  Similarity=0.237  Sum_probs=166.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhc-CCCceeeeeeEEEeC--CeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVA-HHKNLVCLLGYHIEQ--ECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~-~h~~iv~~~~~~~~~--~~~~   84 (266)
                      .+|.+.+.||+|++|.||+|.+. .++..+++|++.                .+++.+ +||||+++++++...  ...+
T Consensus         7 ~~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           7 RKYEILQKLGKGAYGIVWKAIDR-RTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hHHHHhHhhcCCCCeeEEEEEEc-CCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            46788899999999999999975 567889998663                366788 999999999998653  3689


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-  152 (266)
                      +||||+.+ +|.+++... .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........ 
T Consensus        86 lv~e~~~~-~L~~~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~  163 (337)
T cd07852          86 LVFEYMET-DLHAVIRAN-ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEEN  163 (337)
T ss_pred             EEeccccc-CHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhcccccccc
Confidence            99999975 999998754 333      34455666688888888887     89999999999999999986543221 


Q ss_pred             ---cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          153 ---QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       153 ---~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                         .......++..|+|||.+.+ ..++.++|+||||+++|+|+||+.||.....                         
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T cd07852         164 PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSP  243 (337)
T ss_pred             ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhh
Confidence               12223567889999997754 4578899999999999999999998853111                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhC
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEV  241 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~  241 (266)
                                           +.....+.+++.+||+.+|.+||++.++++.  +..+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~  304 (337)
T cd07852         244 FAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNP  304 (337)
T ss_pred             hHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccC
Confidence                                 1134557789999999999999999999965  5555443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.97  E-value=6.9e-30  Score=213.56  Aligned_cols=204  Identities=21%  Similarity=0.266  Sum_probs=160.8

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHh---hhcCCCceeeeeeEEEeCCe----
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVV---HVAHHKNLVCLLGYHIEQEC----   82 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l---~~~~h~~iv~~~~~~~~~~~----   82 (266)
                      |.+.+.||+|++|.||+|.++ .++..+++|++.                .++   +.++|||++++++++.....    
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDL-NTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDREL   79 (287)
T ss_pred             CeEEEEecccCceEEEEEEEC-CCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCc
Confidence            567889999999999999986 468889999775                123   34469999999999987765    


Q ss_pred             -EEEEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           83 -RLLVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        83 -~~lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                       .+++|||+.+ +|.+++....  .+.      +..++..++.++|..+++|.     |++++.++.++|+|||++....
T Consensus        80 ~~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          80 KLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             eeEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence             8999999975 8998886532  233      44556666688888888877     8999999999999999997754


Q ss_pred             cccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      ...  ......++..|+|||.+.+..++.++|+||||+++|+|++|.+||.....                         
T Consensus       159 ~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (287)
T cd07838         159 FEM--ALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSL  236 (287)
T ss_pred             CCc--ccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCccc
Confidence            221  12233468889999999888899999999999999999999888764221                         


Q ss_pred             -----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.....+.+++.+||+.||.+||++++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         237 PRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             chhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                             012245567999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=3.4e-30  Score=220.10  Aligned_cols=216  Identities=17%  Similarity=0.224  Sum_probs=172.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----eE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----CR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----~~   83 (266)
                      +|.+.+.||.|++|.||+|... ..+..+++|.+.                +.++.++||||+++++++....     ..
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDK-RTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeC-CCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccce
Confidence            4788899999999999999975 567889998654                3677889999999999987764     78


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +++|||+.+ +|.+++.....++      +..++..++..+|.+++.|+     ||+++.++.++|+|||.+........
T Consensus        80 ~lv~e~~~~-~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~  158 (330)
T cd07834          80 YIVTELMET-DLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDED  158 (330)
T ss_pred             EEEecchhh-hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeeccccc
Confidence            999999975 8999987654443      44556666788888888887     89999999999999999987643321


Q ss_pred             --cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------
Q 042690          153 --QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------  203 (266)
Q Consensus       153 --~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------  203 (266)
                        .......++..|+|||.+.+. .++.++|+||||+++|+|++|..||.....                          
T Consensus       159 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  238 (330)
T cd07834         159 EKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEK  238 (330)
T ss_pred             ccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccc
Confidence              123345678899999998877 788999999999999999999998854211                          


Q ss_pred             --------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhCC
Q 042690          204 --------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEVP  242 (266)
Q Consensus       204 --------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~~  242 (266)
                                          +.....+.+++.+||+.+|.+||+++++++.  ++.+...+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~  299 (330)
T cd07834         239 ARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPE  299 (330)
T ss_pred             hhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcccc
Confidence                                1134556789999999999999999999974  76665544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=5.9e-30  Score=213.74  Aligned_cols=204  Identities=18%  Similarity=0.278  Sum_probs=162.3

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------HhhhcC-CCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAH-HKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |.+.+.||+|++|.||+|... .++..+++|++..               .++.++ |||++++++++..++..++||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNK-ETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEEC-CCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEec
Confidence            567889999999999999985 5677899987542               455677 99999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           90 MHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        90 ~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      + +++|.+++....  .+.      +..++..++.++|..++.|.     ||+++.++.++|+|||++......  ....
T Consensus        80 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~--~~~~  156 (283)
T cd07830          80 M-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR--PPYT  156 (283)
T ss_pred             C-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCC--CCcC
Confidence            9 779999887654  333      33456666678888888777     899999999999999999865321  1223


Q ss_pred             cccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          157 GMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ...++..|+|||.+. +..++.++|+||||+++++|++|+.||.....                                
T Consensus       157 ~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07830         157 DYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFR  236 (283)
T ss_pred             CCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccc
Confidence            355788999999775 44578899999999999999999988853211                                


Q ss_pred             -------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   +.....+.+++++||+.+|.+||+++|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         237 FPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence                         112356788999999999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-31  Score=235.96  Aligned_cols=219  Identities=22%  Similarity=0.294  Sum_probs=181.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHHH---------------HhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLDK---------------VVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~~---------------~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .....+.||+|+||+||+|.|.+..   +-+||+|++.+               .|..++|||++++++++.... ..||
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlv  775 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLV  775 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHH
Confidence            4566789999999999999997652   34568887762               777899999999999998766 7799


Q ss_pred             EEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           87 YKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      ++|++.|+|.+|++.++.       +.|..+++.++.+++.++..|+     |+||.....+|+.|||+++....+... 
T Consensus       776 tq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey  855 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEY  855 (1177)
T ss_pred             HHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccc
Confidence            999999999999986543       6788888888888887777776     899999999999999999987654443 


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~  216 (266)
                      ......-.+.|||-|.+....++.++||||||+++||++| |..|+.+                ..++.-.-.+..++.+
T Consensus       856 ~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvk  935 (1177)
T KOG1025|consen  856 SAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGERLSQPPICTIDVYMVMVK  935 (1177)
T ss_pred             cccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccccCCCCCCccHHHHHHHHH
Confidence            2233444678999999999999999999999999999998 5568775                2344455566679999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      ||..|+..||+++++.....++.+.|..
T Consensus       936 Cwmid~~~rp~fkel~~~fs~~ardpqr  963 (1177)
T KOG1025|consen  936 CWMIDADSRPTFKELAEEFSRMARDPQR  963 (1177)
T ss_pred             HhccCcccCccHHHHHHHHHHHhcCcce
Confidence            9999999999999999999999887753

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.97  E-value=6.5e-30  Score=210.99  Aligned_cols=204  Identities=14%  Similarity=0.193  Sum_probs=163.9

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||.|++|.||++.+. .++..+++|.+.                 .+++.++||||+++++.+......+++|||+.+++
T Consensus         1 lg~g~~~~vy~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKK-STGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEEC-CCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            689999999999985 568889999764                 26677889999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-------cccc
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-------QTLT  156 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-------~~~~  156 (266)
                      |.+++.....++      +..++..++..+|..++.|+     ||+++.++.++|+|||++........       ....
T Consensus        80 L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~  159 (265)
T cd05579          80 LASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDK  159 (265)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccccccccc
Confidence            999998655543      45566667788888888877     89999999999999999876532211       1223


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------Cccc--cchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKT--LEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~--~~~~~~l~~~cl~  219 (266)
                      ...++..|++||...+...+.++|+||||++++++++|..||....               +...  ...+.+++.+||+
T Consensus       160 ~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  239 (265)
T cd05579         160 RIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLV  239 (265)
T ss_pred             CcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhc
Confidence            3457889999999887778899999999999999999999986421               1111  5677899999999


Q ss_pred             cCCCCCCCHHHHHHHHH
Q 042690          220 EKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~  236 (266)
                      .+|.+||++..+.+.|+
T Consensus       240 ~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         240 PDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             CCHhhcCCCccHHHHhc
Confidence            99999999955555444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.97  E-value=1.1e-29  Score=216.91  Aligned_cols=212  Identities=18%  Similarity=0.229  Sum_probs=167.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe-CCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE-QECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv   86 (266)
                      ..|.+.+.||.|+||.||++... .++..+++|++.                ++++.++||||+++++++.. ....+++
T Consensus        10 ~~y~~~~~ig~g~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv   88 (328)
T cd07856          10 NRYVDLQPVGMGAFGLVCSARDQ-LTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFV   88 (328)
T ss_pred             cceEEEEeecccCCeEEEEEEEC-CCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEE
Confidence            46889999999999999999975 678889999652                37778899999999999865 4578899


Q ss_pred             EEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           87 YKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |||+ +++|.+++....-     ..+..++..++.++|..+++|+     |++++.++.++|+|||.+.....    ...
T Consensus        89 ~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~----~~~  163 (328)
T cd07856          89 TELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDP----QMT  163 (328)
T ss_pred             eehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCC----CcC
Confidence            9998 5589988864321     2244566677788888888887     89999999999999999875421    122


Q ss_pred             cccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          157 GMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ...++..|+|||.+.+ ..++.++|+||||+++|+|+||+.||.....                                
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (328)
T cd07856         164 GYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQ  243 (328)
T ss_pred             CCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHh
Confidence            3456788999998765 5688999999999999999999998854211                                


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhC
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEV  241 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~  241 (266)
                                    +.....+.+++.+|++.+|.+||++++++..  ++.+..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~~  297 (328)
T cd07856         244 SLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHDP  297 (328)
T ss_pred             hccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccCC
Confidence                          1233567889999999999999999999865  5544444

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=6.6e-30  Score=216.20  Aligned_cols=209  Identities=22%  Similarity=0.275  Sum_probs=161.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ..+|.+.+.||+|++|.||+|.+. .++..+++|++.                ++++.++||||+++++++....     
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQI-KTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEEC-CCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            568999999999999999999976 567788888652                4788899999999999875432     


Q ss_pred             ---eEEEEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           82 ---CRLLVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        82 ---~~~lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                         ..++||||+.+ +|.+.+... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++..
T Consensus        86 ~~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          86 KRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             cCceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchh
Confidence               46899999976 777766542 2333      44566677788888888887     89999999999999999976


Q ss_pred             ecccccc----------ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC------------
Q 042690          147 LMINQTQ----------TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD------------  203 (266)
Q Consensus       147 ~~~~~~~----------~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------  203 (266)
                      .......          ......++..|+|||.+.+. .++.++|+||||+++|+|++|++||.....            
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~  244 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCG  244 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            5322111          11223567889999987653 478899999999999999999988753111            


Q ss_pred             ---------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                       ......+.+++.+|++.+|.+||++.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         245 TPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             CCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence                                             112245678999999999999999998874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.97  E-value=5.6e-30  Score=213.70  Aligned_cols=205  Identities=20%  Similarity=0.272  Sum_probs=164.9

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |.+.+.||+|++|.||++... .++..+++|.+.                ..++.++|+||+++++++..+...+++|||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDK-LTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcC-CCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEec
Confidence            456789999999999999975 568888998754                367788999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +.+ +|.+++... ..+      .+..++..++..+|..+++|.     ||+++.++.++|+|||.+....... .....
T Consensus        80 ~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~-~~~~~  157 (283)
T cd05118          80 MDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV-RPYTH  157 (283)
T ss_pred             cCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc-ccccC
Confidence            976 888888653 233      344556666788888888887     8999999999999999998764332 22233


Q ss_pred             ccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..++..|+|||.+.+. .++.++|+||||+++|+|+||+.||.....                                 
T Consensus       158 ~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T cd05118         158 YVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSF  237 (283)
T ss_pred             ccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhh
Confidence            5578889999988776 688999999999999999999988854211                                 


Q ss_pred             ------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                  +.....+.+++.+||+.||.+||++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         238 PKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             ccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                        113456778999999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.97  E-value=8.5e-30  Score=214.48  Aligned_cols=210  Identities=17%  Similarity=0.209  Sum_probs=161.3

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------Hhhhc-CCCceeeeeeEEEeCCeEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVA-HHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------~l~~~-~h~~iv~~~~~~~~~~~~~   84 (266)
                      -.+.+|.+.+.||+|++|.||+|.+. .++..+++|.+..               .+... +||||+++++++.+....+
T Consensus        12 ~~~~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~   90 (296)
T cd06618          12 ADLNDLENLGEIGSGTCGQVYKMRFK-KTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVF   90 (296)
T ss_pred             CCcchheeeeEeeccCCeEEEEEEEC-CCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEE
Confidence            35678999999999999999999986 4588899988641               22233 5999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           85 LVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++|||+.+ +|..++... ..++      +..++..++.++|. .+++|+     ||+++.++.++|+|||++...... 
T Consensus        91 ~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~-  168 (296)
T cd06618          91 ICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDS-  168 (296)
T ss_pred             EEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCC-
Confidence            99999854 777777642 2333      33444455566665 466666     899999999999999998765322 


Q ss_pred             ccccccccCCCCcCCccccCCCC----CCcccchhhHHHHHHHHHhCCCcccCCC-----------------C--ccccc
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMP----VTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D--PKTLE  208 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~--~~~~~  208 (266)
                       .......++..|+|||.+.+..    ++.++|+||||+++|+|++|+.||....                 +  .....
T Consensus       169 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (296)
T cd06618         169 -KAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSP  247 (296)
T ss_pred             -CcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCH
Confidence             1222345678999999887543    7889999999999999999999986411                 0  11345


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+.+++.+||..||.+||+++++++.
T Consensus       248 ~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         248 DFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhcC
Confidence            67899999999999999999999855

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.97  E-value=1.6e-29  Score=214.51  Aligned_cols=202  Identities=19%  Similarity=0.174  Sum_probs=160.3

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      |...+.||+|++|+||+|... .++..+++|.+.                 ++++.++|||++++++++.+....|+|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~-~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNS-HTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             hhcceeeccCCCeEEEEEEEC-CCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            555678999999999999975 567888888753                 26778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+.+ ++.+++... ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++....     ...
T Consensus       102 ~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~-----~~~  175 (313)
T cd06633         102 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSS-----PAN  175 (313)
T ss_pred             cCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccC-----CCC
Confidence            9965 787777543 2333      34456666788888888877     8999999999999999986432     122


Q ss_pred             cccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------C----ccccchHHHHHHH
Q 042690          157 GMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------D----PKTLEKPVMIAIQ  216 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------~----~~~~~~~~~l~~~  216 (266)
                      ...++..|+|||.+.   +..++.++|+||||+++|+|++|..|+....             +    ......+.+++.+
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  255 (313)
T cd06633         176 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDY  255 (313)
T ss_pred             CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHH
Confidence            345788999999874   4567889999999999999999999886521             1    1233457889999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~  234 (266)
                      ||+.+|.+||++.+++..
T Consensus       256 ~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         256 CLQKIPQERPASAELLRH  273 (313)
T ss_pred             HccCChhhCcCHHHHhcC
Confidence            999999999999998853

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=5.7e-30  Score=211.36  Aligned_cols=206  Identities=20%  Similarity=0.264  Sum_probs=160.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeH-------------------HHHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKL-------------------DKVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~-------------------~~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +|.+.+.||+|++|.||++.+.. .+..+++|..                   ..+++.++||||+++++++......++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   79 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKK-AVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCI   79 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecC-CCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEE
Confidence            47888999999999999998752 2222322222                   136778899999999999998889999


Q ss_pred             EEEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           86 VYKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ||||+.+++|.+++...    ..+      .+..++..++.++|..++.|.     |++++. +.++|+|||++......
T Consensus        80 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~  158 (260)
T cd08222          80 ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGS  158 (260)
T ss_pred             EEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCC
Confidence            99999999999988642    223      334556677788888888887     788875 56999999998765422


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------CccccchHHHHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------DPKTLEKPVMIA  214 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------~~~~~~~~~~l~  214 (266)
                      . .......++..|+|||...+..++.++|+||||+++|+|++|..||....                +......+.+++
T Consensus       159 ~-~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  237 (260)
T cd08222         159 C-DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPSLPETYSRQLNSIM  237 (260)
T ss_pred             c-ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCCcchhcHHHHHHH
Confidence            2 22223457889999999888788899999999999999999999886411                223446778899


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||..+|++||++.++++
T Consensus       238 ~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         238 QSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             HHHhcCChhhCcCHHHHhh
Confidence            9999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.2e-29  Score=217.91  Aligned_cols=215  Identities=18%  Similarity=0.248  Sum_probs=166.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ..+|.+.+.||+|++|.||+|.+. .++..+|+|++.                .+++.++||||+++++++....     
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDK-RTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeC-CCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCC
Confidence            357889999999999999999975 568889998764                3677889999999999986542     


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                       ..++||||+.. +|.++....-.    ..+..++..++.++|.++++|+     ||+++.++.++|+|||+++....  
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~--  169 (342)
T cd07879          93 QDFYLVMPYMQT-DLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADA--  169 (342)
T ss_pred             ceEEEEeccccc-CHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCC--
Confidence             46899999965 77776542111    2244556666788888888877     89999999999999999875421  


Q ss_pred             ccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                        ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||.....                           
T Consensus       170 --~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
T cd07879         170 --EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAA  247 (342)
T ss_pred             --CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccch
Confidence              2223456888999998765 4578899999999999999999999865220                           


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhCCC
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEVPS  243 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~~~  243 (266)
                                         +.....+.+++.+||+.||.+||++++++..  ++.....++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~  308 (342)
T cd07879         248 KSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADE  308 (342)
T ss_pred             HHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccc
Confidence                               1123456799999999999999999999844  777655443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.97  E-value=1.9e-29  Score=213.60  Aligned_cols=203  Identities=19%  Similarity=0.182  Sum_probs=160.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|...+.||+|++|.||+|... .++..+++|.+.                 ++++.++|+|++++++++......++||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~-~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDV-RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEc-CCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            4666789999999999999976 567778888653                 2677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcC-CCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECL-RPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~-~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+. +++.+++.... .+..      ..++..++.++|..+++|+     ||+++.++.++|+|||++......     
T Consensus        95 e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-----  168 (308)
T cd06634          95 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-----  168 (308)
T ss_pred             EccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc-----
Confidence            9997 58887775332 2333      3445556677887777777     899999999999999998765321     


Q ss_pred             ccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~  215 (266)
                      ....++..|+|||.+.   ...++.++||||||+++|+|++|..|+....                 .......+.+++.
T Consensus       169 ~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  248 (308)
T cd06634         169 NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVD  248 (308)
T ss_pred             ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCcCcccccHHHHHHHH
Confidence            2345688999999864   3457889999999999999999999875411                 1134456788999


Q ss_pred             HhhhcCCCCCCCHHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~  234 (266)
                      +||..+|.+||++.+++..
T Consensus       249 ~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         249 SCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             HHhhCCcccCCCHHHHhhC
Confidence            9999999999999999865

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=2.3e-29  Score=215.43  Aligned_cols=207  Identities=16%  Similarity=0.207  Sum_probs=163.2

Q ss_pred             cee-eeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------------HHhhhcCCCceeeeee
Q 042690           25 HIY-SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------------KVVHVAHHKNLVCLLG   75 (266)
Q Consensus        25 ~~~-~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------------~~l~~~~h~~iv~~~~   75 (266)
                      +|. +.+.||+|+||+||+|... ..+..+|+|.+.                            ++++.++||||+++++
T Consensus         9 ry~~~~~~ig~G~~g~vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          9 RYIQKGAHLGEGTYGKVEKAYDT-LTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             chhhhhhcccCCCceeEEEEEEC-CCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            454 3467999999999999975 567888888542                            3577889999999999


Q ss_pred             EEEeCCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           76 YHIEQECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        76 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                      ++...+..+++|||+. ++|.+++.....++      +..++..++..+|..+++|.     ||+++.++.++|+|||.+
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~  166 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLA  166 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccce
Confidence            9999999999999997 59999987654433      55667777788888888887     899999999999999999


Q ss_pred             eeecccc-------------ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC-------
Q 042690          145 KLLMINQ-------------TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD-------  203 (266)
Q Consensus       145 ~~~~~~~-------------~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------  203 (266)
                      .......             ........++..|+|||.+.+. .++.++|+||||+++|+|++|..||.....       
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i  246 (335)
T PTZ00024        167 RRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRI  246 (335)
T ss_pred             eecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            7654110             1111223457789999988654 468899999999999999999988854211       


Q ss_pred             ------------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                          +.....+.+++.+||+.+|++||++++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        247 FELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence                                                112455778999999999999999999985

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=211.17  Aligned_cols=203  Identities=18%  Similarity=0.160  Sum_probs=172.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+.+|..++.||+|.||+|.+++-+ .+++.+|+|++++                 +++..+||.+..+.-.+.....++
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEK-at~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlC  244 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREK-ATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLC  244 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeec-ccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEE
Confidence            4567888999999999999999965 7899999999883                 788889999988887888899999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||++||.|.-++.....++      +...+..++.++|+.+++-+     |.++|.+|.+|+.|||+++... ....
T Consensus       245 FVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I-~~g~  323 (516)
T KOG0690|consen  245 FVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI-KYGD  323 (516)
T ss_pred             EEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcc-cccc
Confidence            9999999999998887544433      44556667777877776655     8999999999999999998643 3455


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ..+..+||+.|+|||++....|..+.|-|.+|+++|||++|+.||...               .+....++...++...|
T Consensus       324 t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL  403 (516)
T KOG0690|consen  324 TTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLKFPRTLSPEAKTLLSGLL  403 (516)
T ss_pred             eeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhccCCccCCHHHHHHHHHHh
Confidence            667789999999999999999999999999999999999999999873               34455667778999999


Q ss_pred             hcCCCCCC
Q 042690          219 KEKPPLRP  226 (266)
Q Consensus       219 ~~~p~~Rp  226 (266)
                      ..||.+|-
T Consensus       404 ~kdP~kRL  411 (516)
T KOG0690|consen  404 KKDPKKRL  411 (516)
T ss_pred             hcChHhhc
Confidence            99999995

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.7e-29  Score=215.78  Aligned_cols=214  Identities=18%  Similarity=0.241  Sum_probs=168.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ..+|.+.+.||+|++|.||++... .++..||+|++.                .+++.++||||+++++++..+.     
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDR-RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEEC-CCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            456889999999999999999975 678889999763                3677889999999999987543     


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                       .+++||||+ +++|.+++... .+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++.....
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~-~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~  170 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHE-KLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS  170 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccccc
Confidence             458999999 67999888642 33      344556667788888888887     89999999999999999976432


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                          ......++..|+|||.+.+ ..++.++|+||||+++|++++|..||.....                         
T Consensus       171 ----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (343)
T cd07880         171 ----EMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSE  246 (343)
T ss_pred             ----CccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcch
Confidence                1223456889999998765 3578899999999999999999999864210                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHH--HHHHHHHhCCC
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVA--LMLQSILEVPS  243 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il--~~l~~~~~~~~  243 (266)
                                           +.....+.+++.+|+..||.+||++.+++  ..++.+...+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~  309 (343)
T cd07880         247 DAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPED  309 (343)
T ss_pred             hHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCccc
Confidence                                 12234567899999999999999999998  44666655443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-30  Score=194.64  Aligned_cols=173  Identities=17%  Similarity=0.262  Sum_probs=143.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +|...++||+|.||+||+|+.+ .+...||+|+++                .+++.++|.|||+++++..++..+-+|+|
T Consensus         3 ~ydkmekigegtygtvfkarn~-~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe   81 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNR-ETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_pred             chHHHHhhcCCcceeeEecccC-CccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHH
Confidence            4556779999999999999976 788899999887                28889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||.. +|..+......       .+++.++...+..||+++++|+     |.+|+.+|..||+|||+++.+.. .....+
T Consensus        82 ~cdq-dlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgi-pvrcys  159 (292)
T KOG0662|consen   82 FCDQ-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGI-PVRCYS  159 (292)
T ss_pred             HhhH-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCC-ceEeee
Confidence            9976 88888764322       3455666667788898888887     89999999999999999998753 233444


Q ss_pred             cccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHh-CCCcccC
Q 042690          157 GMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIIS-CRCVERQ  200 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~t-g~~p~~~  200 (266)
                      ...-|..|.+|.++.|.. |+...|+||-|||+.|+.. |++.|++
T Consensus       160 aevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg  205 (292)
T KOG0662|consen  160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG  205 (292)
T ss_pred             ceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCC
Confidence            566789999999888765 7889999999999999996 6666665

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.97  E-value=2.9e-29  Score=214.33  Aligned_cols=203  Identities=19%  Similarity=0.143  Sum_probs=156.1

Q ss_pred             eccCCC--cceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           30 KKPCGG--SFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        30 ~~ig~G--~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      ..||.|  ++|+||++.+. .+++.||+|...                .+++.++||||+++++++..++..++||||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHT-PTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEc-CCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            466776  89999999975 678899998864                14456899999999999999999999999999


Q ss_pred             CCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc----
Q 042690           92 NRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT----  154 (266)
Q Consensus        92 ~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~----  154 (266)
                      +++|.+++.....  +      .+..++..++.++|..+++|+     ||+++.++.++++||+.+..........    
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVY  162 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccc
Confidence            9999999876432  2      345566777788888888887     8999999999999997654322111100    


Q ss_pred             --cccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          155 --LTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       155 --~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                        .....++..|+|||.+.+.  .++.++||||+||++|+|++|..||.....                           
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (328)
T cd08226         163 DFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESR  242 (328)
T ss_pred             cccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhh
Confidence              0112345679999988753  478899999999999999999999864210                           


Q ss_pred             -----------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                         ......+.+++++||+.||.+|||++++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         243 MKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             hccchhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence                                               012345778999999999999999999974

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=3e-29  Score=215.39  Aligned_cols=213  Identities=16%  Similarity=0.220  Sum_probs=163.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeC---------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQ---------   80 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~---------   80 (266)
                      ++|.+.+.||.|+||.||+|... .++..|++|.+.              ++++.++||||+++++++...         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~-~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDS-DCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEEC-CCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            58999999999999999999975 677889988653              378888999999999876543         


Q ss_pred             -----CeEEEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeec-CCCEEEEeecCcc
Q 042690           81 -----ECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLH-DYFTVETSDLGLA  144 (266)
Q Consensus        81 -----~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~-~~~~~~l~Dfg~a  144 (266)
                           ...++||||+.+ +|.+++....-     ..+..++..++.++|.++++|+     |++++ .++.++|+|||.+
T Consensus        84 ~~~~~~~~~lv~e~~~~-~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~  162 (342)
T cd07854          84 SLTELNSVYIVQEYMET-DLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA  162 (342)
T ss_pred             cccccceEEEEeecccc-cHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccc
Confidence                 357899999974 89888864321     3345667777788898888887     78997 4567899999999


Q ss_pred             eeecccccc--ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------
Q 042690          145 KLLMINQTQ--TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------  202 (266)
Q Consensus       145 ~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------  202 (266)
                      .........  ......++..|+|||.+.+ ..++.++|+|||||++|+|++|+.||....                   
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T cd07854         163 RIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREED  242 (342)
T ss_pred             eecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHH
Confidence            765321111  1122356888999997654 457889999999999999999999985311                   


Q ss_pred             --------------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH--HHHHH
Q 042690          203 --------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL--MLQSI  238 (266)
Q Consensus       203 --------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~--~l~~~  238 (266)
                                                .+.....+.+++.+||+.||.+||++++++.  .++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~  306 (342)
T cd07854         243 RNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCY  306 (342)
T ss_pred             hhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccc
Confidence                                      0123355678999999999999999999984  35544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.96  E-value=1.1e-29  Score=218.17  Aligned_cols=212  Identities=16%  Similarity=0.228  Sum_probs=166.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCe----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQEC----   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~----   82 (266)
                      ..+|.+.+.||+|++|.||+|.+. .++..+++|++.                .+++.++|||++++.+++.....    
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDT-KTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEEC-CCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            347899999999999999999986 567889998753                36778899999999998765544    


Q ss_pred             --EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           83 --RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        83 --~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                        .++|+||+ +++|.+++... .+.      +..++..++..+|..+++|+     ||+++.++.++|+|||++.....
T Consensus        93 ~~~~lv~e~~-~~~L~~~~~~~-~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~  170 (343)
T cd07851          93 QDVYLVTHLM-GADLNNIVKCQ-KLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD  170 (343)
T ss_pred             ccEEEEEecC-CCCHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccccc
Confidence              89999999 56999998652 333      34556666688888888777     89999999999999999986532


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      .    .....++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||.....                         
T Consensus       171 ~----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  246 (343)
T cd07851         171 E----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSE  246 (343)
T ss_pred             c----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccch
Confidence            1    233457889999998754 3578899999999999999999998854211                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHhC
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILEV  241 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~~  241 (266)
                                           ......+.+++.+||+.+|.+||++.+++..  +..+...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~  307 (343)
T cd07851         247 SARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDP  307 (343)
T ss_pred             hHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCC
Confidence                                 1124567789999999999999999999853  5555444

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=226.79  Aligned_cols=209  Identities=17%  Similarity=0.183  Sum_probs=162.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEe-----CCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIE-----QECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~-----~~~~   83 (266)
                      -..+.+.+.||.|.+|.||++..+ .+++-.|+|+..             .+++.. .|||++.+++++..     ++++
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~-~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqL   96 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHV-KTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQL   96 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeee-ecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeE
Confidence            456889999999999999999976 456666666554             356655 48999999999853     5689


Q ss_pred             EEEEEcCCCCCHHHHHhhcC--CCCHHHH---HH---HHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           84 LLVYKFMHNRSISSLLYECL--RPTWQQR---MQ---DCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~---l~---~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      |||||||.+|+..++++...  ++.+...   +.   ..+.++|.+.++|+     |||++.++.+||+|||.+......
T Consensus        97 WLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT  176 (953)
T KOG0587|consen   97 WLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDST  176 (953)
T ss_pred             EEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeeecc
Confidence            99999999999999998543  3333322   21   22255566666776     899999999999999999887532


Q ss_pred             cccccccccCCCCcCCccccCCC-----CCCcccchhhHHHHHHHHHhCCCcccC------------------CCCcccc
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNM-----PVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTL  207 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~  207 (266)
                      .. ......||+.|||||++...     .|+..+|+||||++..||.-|.+|+.+                  ..+..+.
T Consensus       177 ~g-rRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs  255 (953)
T KOG0587|consen  177 VG-RRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWS  255 (953)
T ss_pred             cc-cccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHH
Confidence            22 33457899999999988643     377889999999999999999998876                  1234567


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+.++|..||.-|-.+||+..++++
T Consensus       256 ~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  256 KKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             HHHHHHHHHHHhhccccCcchhhhcc
Confidence            88899999999999999999877653

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.9e-30  Score=215.72  Aligned_cols=204  Identities=23%  Similarity=0.246  Sum_probs=167.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +...|...+.||.|+||.|+-+.-+ .+|.-+|.|++.+                 ++.++..+.||.+--.+++...++
T Consensus       183 t~n~F~~~RvlGkGGFGEV~acqvr-aTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LC  261 (591)
T KOG0986|consen  183 TKNTFRVYRVLGKGGFGEVCACQVR-ATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALC  261 (591)
T ss_pred             cccceeeeEEEecccccceeEEEEe-cchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceE
Confidence            3456777889999999999988865 7899999988762                 778889999999988889999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC--CCCHHHHHHHHH------HHhhhcCcc-----ccceeecCCCEEEEeecCcceeecccc
Q 042690           85 LVYKFMHNRSISSLLYECL--RPTWQQRMQDCI------RDCWRTRAL-----ACRILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~~~~~l~~~~------~~~~~~~~~-----h~nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      +||..|+||+|.-+|-+.+  .++..+.+.++.      .++|..+++     +.|||+|++|+++++|+|+|....  +
T Consensus       262 lVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~--~  339 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIP--E  339 (591)
T ss_pred             EEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecC--C
Confidence            9999999999999998766  455555555554      344433333     349999999999999999998764  5


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-------------------CCCccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-------------------GSDPKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-------------------~~~~~~~~~~~~  212 (266)
                      ........||.+|||||++.+..|+...|-|||||++|+|+.|+.||..                   ..+...+++..+
T Consensus       340 g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eaks  419 (591)
T KOG0986|consen  340 GKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKS  419 (591)
T ss_pred             CCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHH
Confidence            5566677999999999999999999999999999999999999999987                   223445566777


Q ss_pred             HHHHhhhcCCCCCCCH
Q 042690          213 IAIQFVKEKPPLRPSL  228 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~  228 (266)
                      +.+..|+.||.+|-..
T Consensus       420 lc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  420 LCEGLLTKDPEKRLGC  435 (591)
T ss_pred             HHHHHHccCHHHhccC
Confidence            9999999999988653

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-29  Score=228.77  Aligned_cols=215  Identities=17%  Similarity=0.210  Sum_probs=169.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEc---CC---CcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCe
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLA---PG---DKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~---~~---~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      +..+.+.||+|.||.|++|...   +.   ....||+|.+.               ++|+.+ +|+||+.+++++...+.
T Consensus       297 ~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~  376 (609)
T KOG0200|consen  297 NLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGP  376 (609)
T ss_pred             hccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCc
Confidence            3455669999999999999843   11   25678999876               255555 49999999999999899


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC----------------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCE
Q 042690           83 RLLVYKFMHNRSISSLLYECL----------------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFT  135 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~----------------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~  135 (266)
                      .++|+||+..|+|..+++..+                .      +++..+++..+.++.+...+|+     |||++.+..
T Consensus       377 ~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~  456 (609)
T KOG0200|consen  377 LYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKV  456 (609)
T ss_pred             eEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCE
Confidence            999999999999999999766                1      3455666666666666666665     999999999


Q ss_pred             EEEeecCcceeecccccccccccc--CCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC------------
Q 042690          136 VETSDLGLAKLLMINQTQTLTGMR--ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ------------  200 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~~~~~~~~--~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~------------  200 (266)
                      +|++|||+|+..............  -...|||||.+....++.++||||||+++||++| |..|+++            
T Consensus       457 ~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~  536 (609)
T KOG0200|consen  457 IKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLK  536 (609)
T ss_pred             EEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHh
Confidence            999999999965433333322222  3456999999999889999999999999999998 5557764            


Q ss_pred             -----CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          201 -----GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       201 -----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                           ..|.....++.+++..||..+|.+||++.++.+.++...
T Consensus       537 ~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l  580 (609)
T KOG0200|consen  537 EGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHL  580 (609)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHH
Confidence                 223445677788999999999999999999999988854

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.96  E-value=1.7e-30  Score=208.93  Aligned_cols=177  Identities=19%  Similarity=0.277  Sum_probs=140.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC-CCcc--eeeeeeHH----------------HHhhhcCCCceeeeeeEEEe-CCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP-GDKT--NIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE-QEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~-~~~~--~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~-~~~   82 (266)
                      ...|+..+.||+|.||.||+|...+ .+.+  .+|||+++                .+++.++|||++.+..++.+ +..
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            4578999999999999999997542 2323  78999887                27889999999999999877 788


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC-----------CCHHHHHHHHHHHhhhcCcccc-----ceeecCC----CEEEEeecC
Q 042690           83 RLLVYKFMHNRSISSLLYECLR-----------PTWQQRMQDCIRDCWRTRALAC-----RILLHDY----FTVETSDLG  142 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~-----------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~----~~~~l~Dfg  142 (266)
                      .|+++||.+. +|.+.|+-+..           .++..++...+.++|+.=++|+     ||+|..+    |.+|++|+|
T Consensus       103 v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlG  181 (438)
T KOG0666|consen  103 VWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLG  181 (438)
T ss_pred             EEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeeccc
Confidence            9999999998 99999984332           2333455555567765555555     9999988    899999999


Q ss_pred             cceeecccccc--ccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccC
Q 042690          143 LAKLLMINQTQ--TLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       143 ~a~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      +++.+..+-..  ......-|..|.|||.+.|.. ||++.|+||+|||+.||+|.++.|..
T Consensus       182 laR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  182 LARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             HHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            99987532111  223456689999999888765 99999999999999999999998876

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=1.3e-28  Score=210.70  Aligned_cols=215  Identities=19%  Similarity=0.237  Sum_probs=164.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCC--cceeeeeeHH----------------HHhhhc-CCCceeeeeeEEEeC----C
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGD--KTNIGVKKLD----------------KVVHVA-HHKNLVCLLGYHIEQ----E   81 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~--~~~vaiK~~~----------------~~l~~~-~h~~iv~~~~~~~~~----~   81 (266)
                      .|.+.+.||+|+||.||++.+. ..  +..+|+|++.                .+++.+ +||||+++++.+...    .
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~-~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNA-ETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeC-CCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCC
Confidence            4778899999999999999985 44  7789999754                245566 599999999875432    3


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ..+++++|+. ++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++......
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~  158 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSEN  158 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccc
Confidence            5788999986 59999987655543      44556667788888888887     899999999999999999865422


Q ss_pred             ccc---ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC------------------------
Q 042690          151 QTQ---TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------------  202 (266)
Q Consensus       151 ~~~---~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------------  202 (266)
                      ...   ......++..|+|||.+.+ ..++.++|+||+|+++|+|++|..||....                        
T Consensus       159 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (332)
T cd07857         159 PGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIG  238 (332)
T ss_pred             cccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhh
Confidence            111   1223567899999997665 468899999999999999999998885421                        


Q ss_pred             ----------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH--HHHHHHhC
Q 042690          203 ----------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL--MLQSILEV  241 (266)
Q Consensus       203 ----------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~~  241 (266)
                                            .+.....+.+++.+|++.||.+||++.+++.  .+.++..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~  301 (332)
T cd07857         239 SPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDP  301 (332)
T ss_pred             hhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCc
Confidence                                  0112346778999999999999999999984  46666543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=4e-29  Score=208.47  Aligned_cols=205  Identities=20%  Similarity=0.254  Sum_probs=163.7

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      |...+.||+|++|.||+|... .+++.+++|.+.                .+++.++|+|++++++++.+....++||||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDK-KTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeec-CCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecC
Confidence            456788999999999999975 568889988655                267788999999999999998999999999


Q ss_pred             CCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +.+ +|.+++... ..++      +..++..++..+|..+++|+     ||++++++.++|+|||.+...... ......
T Consensus        80 ~~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~-~~~~~~  157 (282)
T cd07829          80 CDM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP-LRTYTH  157 (282)
T ss_pred             cCc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCC-ccccCc
Confidence            985 999999765 2333      44556666688888888877     899999999999999999765422 112233


Q ss_pred             ccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ...+..|+|||.+.+. .++.++|+||||++++++++|..||.....                                 
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (282)
T cd07829         158 EVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFP  237 (282)
T ss_pred             cccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccccccccc
Confidence            4457789999987765 788999999999999999999888854210                                 


Q ss_pred             -----------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                 +.....+.+++.+||+.+|.+||++++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         238 KFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence                       112346788999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=7e-29  Score=203.43  Aligned_cols=197  Identities=19%  Similarity=0.144  Sum_probs=160.3

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      ||.|++|.||++.+. .++..+++|.+.                 ++++.++|||++++++.+..+...+++|||+.+++
T Consensus         1 lg~G~~~~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKK-DTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEEC-CCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            689999999999975 567888888643                 36778899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCC
Q 042690           95 ISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        95 L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      |.+++.....+.      +..++..++..+|..++.|.     ||+++.++.++|+|||.+....... .......++..
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~  158 (250)
T cd05123          80 LFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG-SRTNTFCGTPE  158 (250)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCC-CcccCCcCCcc
Confidence            999998665543      33456666677777777776     8999999999999999998754221 22334557889


Q ss_pred             cCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHhhhcCCCCCCCH
Q 042690          164 YLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQFVKEKPPLRPSL  228 (266)
Q Consensus       164 y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~cl~~~p~~Rps~  228 (266)
                      |++||...+...+.++|+||||+++|++++|..||....               +......+.+++.+||..||.+||++
T Consensus       159 ~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~  238 (250)
T cd05123         159 YLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGS  238 (250)
T ss_pred             ccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCc
Confidence            999999888888899999999999999999999985422               22235677899999999999999999


Q ss_pred             HH
Q 042690          229 RI  230 (266)
Q Consensus       229 ~~  230 (266)
                      .+
T Consensus       239 ~~  240 (250)
T cd05123         239 GG  240 (250)
T ss_pred             cc
Confidence            43

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.2e-29  Score=210.72  Aligned_cols=215  Identities=18%  Similarity=0.183  Sum_probs=162.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhh--hcCCCceeeeeeEEEeCC----eEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVH--VAHHKNLVCLLGYHIEQE----CRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~--~~~h~~iv~~~~~~~~~~----~~~lv   86 (266)
                      .++.+.+.||+|.||.||+|.|   .|..||+|++.           ++.+  .++|+||+.+++....++    ++|||
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w---rGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLv  287 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW---RGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLV  287 (513)
T ss_pred             heeEEEEEecCccccceeeccc---cCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEe
Confidence            4688999999999999999999   57789999886           2333  568999999999875443    68999


Q ss_pred             EEcCCCCCHHHHHhhcCCCCHHHHHHHHH------------------HH-hhhcCccccceeecCCCEEEEeecCcceee
Q 042690           87 YKFMHNRSISSLLYECLRPTWQQRMQDCI------------------RD-CWRTRALACRILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~l~~~~------------------~~-~~~~~~~h~nili~~~~~~~l~Dfg~a~~~  147 (266)
                      ++|.+.|||.+|+.. ..++...-+..++                  +. +.|++++..||||..+|.+-++|+|+|...
T Consensus       288 TdYHe~GSL~DyL~r-~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h  366 (513)
T KOG2052|consen  288 TDYHEHGSLYDYLNR-NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  366 (513)
T ss_pred             eecccCCcHHHHHhh-ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEe
Confidence            999999999999986 4455444444333                  12 224444445999999999999999999876


Q ss_pred             ccccc---cccccccCCCCcCCccccCCCC----C--CcccchhhHHHHHHHHHhCC----------CcccCCC------
Q 042690          148 MINQT---QTLTGMRETKGYLPPEWFRNMP----V--TVKVDVYSFGVMLLEIISCR----------CVERQGS------  202 (266)
Q Consensus       148 ~~~~~---~~~~~~~~~~~y~aPE~~~~~~----~--~~~~Di~slG~i~~~l~tg~----------~p~~~~~------  202 (266)
                      .....   .......||.+|||||++....    +  -..+||||||.++||++.+.          .||.+-.      
T Consensus       367 ~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~  446 (513)
T KOG2052|consen  367 DSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSF  446 (513)
T ss_pred             cccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCH
Confidence            54322   2334588999999999986432    1  13599999999999988643          2554300      


Q ss_pred             ---------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          203 ---------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       203 ---------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                                           ....+..+.++++.||..||.-|-++-.|-+.|.++.+.+
T Consensus       447 eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~~  507 (513)
T KOG2052|consen  447 EEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNSD  507 (513)
T ss_pred             HHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcCh
Confidence                                 1123456667999999999999999999999998887644

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=9e-29  Score=212.73  Aligned_cols=211  Identities=17%  Similarity=0.208  Sum_probs=164.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      ..+|.+.+.||+|+||.||++... .++..||+|++.                .+++.++||||+++++++...      
T Consensus        16 ~~~y~~~~~lg~G~~g~v~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (345)
T cd07877          16 PERYQNLSPVGSGAYGSVCAAFDT-KTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   94 (345)
T ss_pred             cCceEEEEEeeecCCeEEEEEEEc-CCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeeccccccc
Confidence            367999999999999999999865 567889999763                267788999999999988643      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ...+++++++ +++|.+++... .+.      +..++..++.++|..+++|+     ||++++++.++|+|||++.....
T Consensus        95 ~~~~lv~~~~-~~~L~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~  172 (345)
T cd07877          95 NDVYLVTHLM-GADLNNIVKCQ-KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  172 (345)
T ss_pred             ccEEEEehhc-ccCHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccccc
Confidence            3467888877 67998887643 333      44556677788888888887     89999999999999999876421


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                          ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||.....                         
T Consensus       173 ----~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T cd07877         173 ----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSE  248 (345)
T ss_pred             ----cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccH
Confidence                2223457889999998765 4678899999999999999999998853111                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHh
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILE  240 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~  240 (266)
                                           ......+.+++.+|+..||.+||++.++++.  +.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~  308 (345)
T cd07877         249 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  308 (345)
T ss_pred             hHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCC
Confidence                                 0123456789999999999999999999854  444433

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.3e-29  Score=219.12  Aligned_cols=207  Identities=17%  Similarity=0.152  Sum_probs=174.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      ...|+....+|.|+|+.|-.+.+. .+.+..++|++.+           .+...+||||+++.+++.++.+.|+|||.+.
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~-~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESS-PTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             chhhccccccCCCCccceeeeecc-ccccchhheeccccccccccccchhhhhcCCCcceeecceecCCceeeeeehhcc
Confidence            567888899999999999988876 6777788888874           4556679999999999999999999999999


Q ss_pred             CCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceee-cCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILL-HDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili-~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      ++-+.+.+.....     ..|..++..++.++|.++++|+     |||+ ++.+.++|+|||.++.....    .....-
T Consensus       400 g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----~~tp~~  475 (612)
T KOG0603|consen  400 GGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----CDTPAL  475 (612)
T ss_pred             ccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh----hcccch
Confidence            9888887764332     3588889999999999999888     9999 58899999999999876432    223345


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------ccccchHHHHHHHhhhcCCCCCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------PKTLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------~~~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                      |..|.|||++....+++++|+||||+++|+|++|+.||.....              ...+....+++.+||+.||.+||
T Consensus       476 t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl  555 (612)
T KOG0603|consen  476 TLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRL  555 (612)
T ss_pred             hhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCc
Confidence            8899999999988999999999999999999999999976322              34556677899999999999999


Q ss_pred             CHHHHHHH
Q 042690          227 SLRIVALM  234 (266)
Q Consensus       227 s~~~il~~  234 (266)
                      ++.+++..
T Consensus       556 ~~~~i~~h  563 (612)
T KOG0603|consen  556 GADEIGAH  563 (612)
T ss_pred             ChhhhccC
Confidence            99998753

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.96  E-value=8.5e-29  Score=209.99  Aligned_cols=198  Identities=17%  Similarity=0.127  Sum_probs=151.2

Q ss_pred             cceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHH
Q 042690           36 SFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLL   99 (266)
Q Consensus        36 ~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l   99 (266)
                      +++.||.+... .++..+|+|++.                ..++.++||||+++++++..+...+++|||+.+++|.+++
T Consensus        12 ~~~~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l   90 (314)
T cd08216          12 DLMIVHLAKHK-PTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLL   90 (314)
T ss_pred             CCceEEEEEec-CCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHH
Confidence            34455555544 378899999753                2677889999999999999999999999999999999999


Q ss_pred             hhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc------cccccccC
Q 042690          100 YECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT------QTLTGMRE  160 (266)
Q Consensus       100 ~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~------~~~~~~~~  160 (266)
                      ....  .      ..+..++..++.++|.++++|+     ||+++.++.++++||+.+........      .......+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (314)
T cd08216          91 KTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVK  170 (314)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccc
Confidence            7532  1      2244566677788888888887     89999999999999999875532111      11122446


Q ss_pred             CCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCCCc----------------------------------
Q 042690          161 TKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGSDP----------------------------------  204 (266)
Q Consensus       161 ~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~----------------------------------  204 (266)
                      +..|+|||.+.+  ..++.++|+||+|+++|+|++|..||......                                  
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (314)
T cd08216         171 NLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSN  250 (314)
T ss_pred             cccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccc
Confidence            778999998765  35788999999999999999999998642110                                  


Q ss_pred             ---------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 ---------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ---------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                     .....+.+++.+||..||++||+++++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         251 EHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             cccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence                           011345679999999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=1.2e-28  Score=201.11  Aligned_cols=189  Identities=19%  Similarity=0.199  Sum_probs=152.1

Q ss_pred             CcceEEEEEEEcCCCcceeeeeeHHH---------HhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCC
Q 042690           35 GSFSTVYTGVLAPGDKTNIGVKKLDK---------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP  105 (266)
Q Consensus        35 G~~g~V~~~~~~~~~~~~vaiK~~~~---------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~  105 (266)
                      |.++.||++.+. .+++.+++|.+..         .+....||||+++++++......+++|||+.+++|.+++.....+
T Consensus         4 g~~~~v~~~~~~-~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l   82 (237)
T cd05576           4 GVIDKVLLVMDT-RTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNI   82 (237)
T ss_pred             cccceEEEEEEc-cCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhcCC
Confidence            889999999976 6788899998863         233446899999999999999999999999999999998765554


Q ss_pred             C------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCC
Q 042690          106 T------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMP  174 (266)
Q Consensus       106 ~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  174 (266)
                      +      +..++..++.++|..+++|+     |++++.++.++++|||.+......    .....++..|+|||.+.+..
T Consensus        83 ~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~  158 (237)
T cd05576          83 PEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS----CDGEAVENMYCAPEVGGISE  158 (237)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccc----cccCCcCccccCCcccCCCC
Confidence            3      34556666788888888777     899999999999999987654321    12234567899999988888


Q ss_pred             CCcccchhhHHHHHHHHHhCCCcccCC-----------CCccccchHHHHHHHhhhcCCCCCCCH
Q 042690          175 VTVKVDVYSFGVMLLEIISCRCVERQG-----------SDPKTLEKPVMIAIQFVKEKPPLRPSL  228 (266)
Q Consensus       175 ~~~~~Di~slG~i~~~l~tg~~p~~~~-----------~~~~~~~~~~~l~~~cl~~~p~~Rps~  228 (266)
                      ++.++|+||+|+++|+|++|..|+...           .+......+.+++.+|++.||.+||++
T Consensus       159 ~~~~~DvwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~  223 (237)
T cd05576         159 ETEACDWWSLGAILFELLTGKTLVECHPSGINTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGA  223 (237)
T ss_pred             CCchhhHHHHHHHHHHHHHCcchhhcCchhcccccccCCcccCCHHHHHHHHHHccCCHHHhcCC
Confidence            899999999999999999998765431           123345567889999999999999996

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=7.2e-30  Score=233.55  Aligned_cols=209  Identities=15%  Similarity=0.139  Sum_probs=174.3

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -+-++|.+++.||.|+||.|..++++ .++..||.|++.+                 +|...+.+=|+.++-.|.++.++
T Consensus        72 l~~~DfeilKvIGrGaFGEV~lVr~k-~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~L  150 (1317)
T KOG0612|consen   72 LKAEDFEILKVIGRGAFGEVALVRHK-STEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYL  150 (1317)
T ss_pred             CCHHhhHHHHHhcccccceeEEEEee-ccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccce
Confidence            34568999999999999999999987 8899999998874                 55556677888888888999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+||||++||+|-.++....+++      +...+..+++-+|.+|++|+     |+|+|.+|.+||+|||.+-.+..+..
T Consensus       151 YlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~  230 (1317)
T KOG0612|consen  151 YLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGT  230 (1317)
T ss_pred             EEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCc
Confidence            99999999999999998776533      44567777899999999888     99999999999999999988876666


Q ss_pred             cccccccCCCCcCCccccC----C-CCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CC--ccccc
Q 042690          153 QTLTGMRETKGYLPPEWFR----N-MPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SD--PKTLE  208 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~----~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~--~~~~~  208 (266)
                      .......|||-|.+||++.    + +.|++.+|.||+|+.+|||+.|..||..+                 .|  .+.+.
T Consensus       231 V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSe  310 (1317)
T KOG0612|consen  231 VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSE  310 (1317)
T ss_pred             EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCH
Confidence            6667789999999999875    3 46899999999999999999999999771                 12  45667


Q ss_pred             hHHHHHHHhhhcCCCCCCC---HHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPS---LRIV  231 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps---~~~i  231 (266)
                      ...++|.+.+.. |+.|-.   ++||
T Consensus       311 eakdLI~~ll~~-~e~RLgrngiedi  335 (1317)
T KOG0612|consen  311 EAKDLIEALLCD-REVRLGRNGIEDI  335 (1317)
T ss_pred             HHHHHHHHHhcC-hhhhcccccHHHH
Confidence            777888877665 666655   7766

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=2.7e-28  Score=225.56  Aligned_cols=122  Identities=17%  Similarity=0.205  Sum_probs=105.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +..|.+.++||+|+||.||+|.+. .++..||+|++.                 .+++.++||||+++++++......++
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~-~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l   81 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKK-NNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYL   81 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEEC-CCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEE
Confidence            578999999999999999999985 578899999764                 25677899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           86 VYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      ||||+.+++|.+++.....+      .+..++..++.++|..+++|+     |||++.++.++|+|||+++
T Consensus        82 VmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          82 VMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999765443      344566777788898888888     8999999999999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-29  Score=208.19  Aligned_cols=211  Identities=17%  Similarity=0.171  Sum_probs=171.6

Q ss_pred             hhhhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeE
Q 042690           15 YENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGY   76 (266)
Q Consensus        15 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~   76 (266)
                      .+++-.-...+|..+..||.|+||+|.+|..+ ++...+|||++++                 ++... +.|.++.+..+
T Consensus       340 ~~~~d~i~~tDFnFl~VlGKGSFGKVlLaerk-gtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHSc  418 (683)
T KOG0696|consen  340 SSKRDRIKATDFNFLMVLGKGSFGKVLLAERK-GTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSC  418 (683)
T ss_pred             CCcccceeecccceEEEeccCccceeeeeccc-CcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHH
Confidence            33333445668999999999999999999966 8888999999984                 33333 46889999999


Q ss_pred             EEeCCeEEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           77 HIEQECRLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        77 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      +.+-..+|+||||+.||+|--+|.+.+++      .+...+++.+-.+|..+++-+     |++++.+|.+|++|||+++
T Consensus       419 FQTmDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcK  498 (683)
T KOG0696|consen  419 FQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  498 (683)
T ss_pred             hhhhhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccccc
Confidence            99999999999999999999999887764      355566666677777777765     9999999999999999998


Q ss_pred             eeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchH
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKP  210 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~  210 (266)
                      .-. -...+.....||+.|+|||.+...+|+.+.|-||+|+++|||+.|++||.++.               +...+.+.
T Consensus       499 Eni-~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~elF~aI~ehnvsyPKslSkEA  577 (683)
T KOG0696|consen  499 ENI-FDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQAIMEHNVSYPKSLSKEA  577 (683)
T ss_pred             ccc-cCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHccCcCcccccHHH
Confidence            632 23445567889999999999999999999999999999999999999998733               23344556


Q ss_pred             HHHHHHhhhcCCCCCCC
Q 042690          211 VMIAIQFVKEKPPLRPS  227 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps  227 (266)
                      .++....+.-+|.+|-.
T Consensus       578 v~ickg~ltK~P~kRLG  594 (683)
T KOG0696|consen  578 VAICKGLLTKHPGKRLG  594 (683)
T ss_pred             HHHHHHHhhcCCccccC
Confidence            66888888888988843

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-29  Score=220.21  Aligned_cols=174  Identities=21%  Similarity=0.255  Sum_probs=142.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC------e
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE------C   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~------~   82 (266)
                      ..++.-+.||+|+||.||+++++ .+|..||+|...               +++++++|+|||+++|+-++..      .
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnk-etG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~   91 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNK-ETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRL   91 (732)
T ss_pred             cceeehhhhcCCccceeeeeccc-ccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCccccc
Confidence            45677889999999999999976 899999999876               4999999999999999976543      4


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC---CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC--CC--EEEEeecCcc
Q 042690           83 RLLVYKFMHNRSISSLLYECL---RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD--YF--TVETSDLGLA  144 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~---~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~--~~--~~~l~Dfg~a  144 (266)
                      .++|||||.+|||...+.+-.   .+.      ....+..+++++|.++++|+     ||++-.  +|  ..||+|||.|
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            689999999999999998532   233      33445555677776666666     887743  33  5799999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      +...  +.......+||..|++||++.. ..|+...|.|||||++|+.+||..||..
T Consensus       172 rel~--d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  172 RELD--DNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             ccCC--CCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence            9875  3446677899999999999884 7789999999999999999999999966

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=4.5e-28  Score=219.42  Aligned_cols=212  Identities=16%  Similarity=0.152  Sum_probs=149.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCC----cceeeeeeHHH----------HhhhcCCCceeeeeeE------EEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGD----KTNIGVKKLDK----------VVHVAHHKNLVCLLGY------HIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~----~~~vaiK~~~~----------~l~~~~h~~iv~~~~~------~~~~~   81 (266)
                      ..++|.+.+.||+|+||.||+|.+. .+    +..+|+|++..          .++...+.++..+...      .....
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~-~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  208 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLV-NKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKED  208 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEc-CCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCC
Confidence            4568999999999999999999986 44    78899997642          1222223333333222      13456


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC--------------------------CCHHHHHHHHHHHhhhcCcccc-----ceee
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR--------------------------PTWQQRMQDCIRDCWRTRALAC-----RILL  130 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~--------------------------~~~~~~l~~~~~~~~~~~~~h~-----nili  130 (266)
                      ..++||||+.+++|.+++.....                          ..+..++..++.++|.++++|+     |||+
T Consensus       209 ~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl  288 (566)
T PLN03225        209 EYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIF  288 (566)
T ss_pred             ceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEE
Confidence            78999999999999999874321                          0244556677788888888887     8999


Q ss_pred             cC-CCEEEEeecCcceeeccccccccccccCCCCcCCccccCCC----------------------CCCcccchhhHHHH
Q 042690          131 HD-YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM----------------------PVTVKVDVYSFGVM  187 (266)
Q Consensus       131 ~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----------------------~~~~~~Di~slG~i  187 (266)
                      +. ++.+||+|||+++..............+++.|||||++...                      .++.++|||||||+
T Consensus       289 ~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGvi  368 (566)
T PLN03225        289 SEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLI  368 (566)
T ss_pred             eCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHH
Confidence            86 58999999999986543333333456789999999965322                      13345699999999


Q ss_pred             HHHHHhCCCcccCC------------C---------Ccccc--------------chHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          188 LLEIISCRCVERQG------------S---------DPKTL--------------EKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       188 ~~~l~tg~~p~~~~------------~---------~~~~~--------------~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      +|||+++..+....            .         .+...              ....+++.+||+.||.+|||+++++
T Consensus       369 L~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L  448 (566)
T PLN03225        369 FLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAAL  448 (566)
T ss_pred             HHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHh
Confidence            99999876543320            0         00000              1123799999999999999999998


Q ss_pred             HH
Q 042690          233 LM  234 (266)
Q Consensus       233 ~~  234 (266)
                      +.
T Consensus       449 ~H  450 (566)
T PLN03225        449 AH  450 (566)
T ss_pred             CC
Confidence            63

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.9e-30  Score=201.50  Aligned_cols=214  Identities=18%  Similarity=0.255  Sum_probs=165.5

Q ss_pred             HhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe---
Q 042690           19 VFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE---   79 (266)
Q Consensus        19 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~---   79 (266)
                      +....+.|..+.+||+|.||.||+|+.+ .+++.||+|+..                +++..++|+|++.++++|.+   
T Consensus        12 ~~~~~~~yek~~kigqGtfgeVFkAr~~-n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~T   90 (376)
T KOG0669|consen   12 FCDEVSKYEKLAKIGQGTFGEVFKARSK-NTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKAT   90 (376)
T ss_pred             ceecchHHHHHHhcCCchHHHHHHHhhc-CccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccC
Confidence            3344567888899999999999999986 566778887654                37888999999999998853   


Q ss_pred             -----CCeEEEEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           80 -----QECRLLVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        80 -----~~~~~lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                           ...+|+|+.+|+. +|.-.+... .+++      .++.+...+.++|...++|+     |+||+.+|.++|+|||
T Consensus        91 p~~r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFG  169 (376)
T KOG0669|consen   91 PTNRDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFG  169 (376)
T ss_pred             CcccccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccc
Confidence                 2358999999987 888877654 3333      33445555577888888887     9999999999999999


Q ss_pred             cceeecccccc---ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC----------------
Q 042690          143 LAKLLMINQTQ---TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS----------------  202 (266)
Q Consensus       143 ~a~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------  202 (266)
                      +++.+...+..   ..+...-|..|.+||.+.|. .++++.|+|+-|||+.+|+|+.+.+.+..                
T Consensus       170 lar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~t  249 (376)
T KOG0669|consen  170 LARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSIT  249 (376)
T ss_pred             cccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCC
Confidence            99887543332   22345668999999987765 58999999999999999999999988711                


Q ss_pred             ------------------C----------ccc------cchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 ------------------D----------PKT------LEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 ------------------~----------~~~------~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                        +          +..      .....+++.+++..||.+|+.+++.+..
T Consensus       250 kevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh  315 (376)
T KOG0669|consen  250 KEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNH  315 (376)
T ss_pred             cccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhch
Confidence                              0          000      1245679999999999999999877654

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.7e-28  Score=226.12  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=156.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC---------
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ---------   80 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~---------   80 (266)
                      +|+.++.||+|+||.|||++++ -+|+.||||++.               +.+.+++|||||++|..|...         
T Consensus       480 DFEEL~lLGkGGFG~VvkVRNK-lDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~ei  558 (1351)
T KOG1035|consen  480 DFEELELLGKGGFGSVVKVRNK-LDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLEI  558 (1351)
T ss_pred             hhHHHHHhcCCCCceEEEEeec-ccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccccccc
Confidence            5666779999999999999987 899999999876               377899999999998763100         


Q ss_pred             --------------------------------------------------------------------------------
Q 042690           81 --------------------------------------------------------------------------------   80 (266)
Q Consensus        81 --------------------------------------------------------------------------------   80 (266)
                                                                                                      
T Consensus       559 ~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~  638 (1351)
T KOG1035|consen  559 VASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEG  638 (1351)
T ss_pred             cccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCC
Confidence                                                                                            


Q ss_pred             ------------------------------CeEEEEEEcCCCCCHHHHHhhcCCC-------CHHHHHHHHHHHhhhcCc
Q 042690           81 ------------------------------ECRLLVYKFMHNRSISSLLYECLRP-------TWQQRMQDCIRDCWRTRA  123 (266)
Q Consensus        81 ------------------------------~~~~lv~e~~~~~~L~~~l~~~~~~-------~~~~~l~~~~~~~~~~~~  123 (266)
                                                    ..+||-||||+...+.+++++....       ...+++..++.++|..++
T Consensus       639 ~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~gi  718 (1351)
T KOG1035|consen  639 SVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGI  718 (1351)
T ss_pred             ccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCce
Confidence                                          0147889999987777777654332       244566667788888887


Q ss_pred             ccc-----ceeecCCCEEEEeecCcceeec-----------------cccccccccccCCCCcCCccccCCC---CCCcc
Q 042690          124 LAC-----RILLHDYFTVETSDLGLAKLLM-----------------INQTQTLTGMRETKGYLPPEWFRNM---PVTVK  178 (266)
Q Consensus       124 ~h~-----nili~~~~~~~l~Dfg~a~~~~-----------------~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~~  178 (266)
                      +|+     |||++.++.+||+|||+|....                 ..++...+...||..|+|||++.+.   .|+.+
T Consensus       719 IHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~K  798 (1351)
T KOG1035|consen  719 IHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSK  798 (1351)
T ss_pred             eeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccch
Confidence            777     9999999999999999998721                 0122233557899999999988754   49999


Q ss_pred             cchhhHHHHHHHHHhCCCcccC-------------CC-------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          179 VDVYSFGVMLLEIISCRCVERQ-------------GS-------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       179 ~Di~slG~i~~~l~tg~~p~~~-------------~~-------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +||||||+|++||+.   ||..             +.       .......-..+++.+++.||.+|||+.|+|.
T Consensus       799 iDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  799 IDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             hhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence            999999999999987   3433             11       1112233356999999999999999998874

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-28  Score=197.16  Aligned_cols=202  Identities=16%  Similarity=0.157  Sum_probs=162.3

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH---H-------hhhcCCCceeeeeeEEEe----CCeEEEEEEcCCCCCH
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---V-------VHVAHHKNLVCLLGYHIE----QECRLLVYKFMHNRSI   95 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---~-------l~~~~h~~iv~~~~~~~~----~~~~~lv~e~~~~~~L   95 (266)
                      +.||-|-.|+|..+.++ .+++.+|+|.+.+   .       .+.-.|||||.++|++++    ...+.+|||.++||.|
T Consensus        68 qvLG~GinGkV~~C~~k-~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeL  146 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHK-RTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGEL  146 (400)
T ss_pred             hhhccccCCceEEEEec-cchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHH
Confidence            57899999999988876 7899999999984   1       112359999999999865    2357799999999999


Q ss_pred             HHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeecccccccccccc
Q 042690           96 SSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        96 ~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      .+.+.+.+.        -++.+++..++.++|.++|.|+     |+|...   |-.+||+|||+|+.-..  ........
T Consensus       147 fsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~--~~~L~TPc  224 (400)
T KOG0604|consen  147 FSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE--PGDLMTPC  224 (400)
T ss_pred             HHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCC--CccccCCc
Confidence            999987654        2455677788899999988888     777764   44789999999987542  22334456


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------C-c---cccchHHHHHHH
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------D-P---KTLEKPVMIAIQ  216 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~-~---~~~~~~~~l~~~  216 (266)
                      -|+.|.|||++....|+...|+||+|+++|-|++|-+||....                   + +   ..++...++++.
T Consensus       225 ~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~  304 (400)
T KOG0604|consen  225 FTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRK  304 (400)
T ss_pred             ccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHH
Confidence            7999999999998889999999999999999999999997711                   1 1   133555679999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~  234 (266)
                      +|..+|.+|-++.++++.
T Consensus       305 LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  305 LLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             HhcCCchhheeHHHhhcC
Confidence            999999999999998753

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=9.2e-29  Score=210.11  Aligned_cols=203  Identities=14%  Similarity=0.166  Sum_probs=173.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+++++++..||-|+||.|=++..+ +....+|+|.+++                 +|...+.|.||++|-.|.++...|
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~-~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvY  496 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVN-SQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVY  496 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEec-ccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhh
Confidence            3567888899999999999999875 4444689988873                 888889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCccc-----cceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALA-----CRILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h-----~nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++||-|.||.|...+++.+.+.      +...+..+..++|.++++=     .|.+++.+|.+||.|||+|+...  .+.
T Consensus       497 mLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~--~g~  574 (732)
T KOG0614|consen  497 MLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIG--SGR  574 (732)
T ss_pred             hhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhc--cCC
Confidence            9999999999999999877643      4455666778888888764     49999999999999999999864  566


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~l~~~  216 (266)
                      ..+..+||+.|.|||.+.+...+.++|.||||+++|||++|.+||...                 .|........+++++
T Consensus       575 KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~  654 (732)
T KOG0614|consen  575 KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGIDKIEFPRRITKTATDLIKK  654 (732)
T ss_pred             ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhhhhhcccccchhHHHHHHH
Confidence            778899999999999999888999999999999999999999999872                 244455566678999


Q ss_pred             hhhcCCCCCCC
Q 042690          217 FVKEKPPLRPS  227 (266)
Q Consensus       217 cl~~~p~~Rps  227 (266)
                      ....+|.+|-.
T Consensus       655 LCr~~P~ERLG  665 (732)
T KOG0614|consen  655 LCRDNPTERLG  665 (732)
T ss_pred             HHhcCcHhhhc
Confidence            88999999865

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.94  E-value=3e-26  Score=186.17  Aligned_cols=195  Identities=21%  Similarity=0.260  Sum_probs=158.1

Q ss_pred             cceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHh
Q 042690           36 SFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLY  100 (266)
Q Consensus        36 ~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  100 (266)
                      +||.||++.+. +++..+++|+..               +.++.++|+|++++++.+......+++|||+.+++|.+++.
T Consensus         1 ~~g~v~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDK-KTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEEC-CCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            57899999986 457888888764               25667799999999999999899999999999999999997


Q ss_pred             hcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccc
Q 042690          101 ECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW  169 (266)
Q Consensus       101 ~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~  169 (266)
                      ....+      .+..++..++..+|..++.|.     ||+++.++.++++|||.+.......  ......++..|++||.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~pE~  157 (244)
T smart00220       80 KRGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG--LLTTFVGTPEYMAPEV  157 (244)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc--ccccccCCcCCCCHHH
Confidence            65433      344555556677777777776     8999999999999999998764322  3334567889999999


Q ss_pred             cCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------cc---ccchHHHHHHHhhhcCCCCCCCHHH
Q 042690          170 FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------PK---TLEKPVMIAIQFVKEKPPLRPSLRI  230 (266)
Q Consensus       170 ~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------~~---~~~~~~~l~~~cl~~~p~~Rps~~~  230 (266)
                      ..+..++.++|+||||++++++++|..||.....                ..   ....+.+++.+|+..+|.+||++.+
T Consensus       158 ~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~  237 (244)
T smart00220      158 LLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEE  237 (244)
T ss_pred             HccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHH
Confidence            8888889999999999999999999998865111                11   4567889999999999999999999


Q ss_pred             HHH
Q 042690          231 VAL  233 (266)
Q Consensus       231 il~  233 (266)
                      +++
T Consensus       238 ~~~  240 (244)
T smart00220      238 ALQ  240 (244)
T ss_pred             Hhh
Confidence            986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-27  Score=195.25  Aligned_cols=204  Identities=15%  Similarity=0.156  Sum_probs=158.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------------HhhhcC-C-C----ceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAH-H-K----NLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------------~l~~~~-h-~----~iv~~~~~~~~~~~~~   84 (266)
                      ..|++.+.+|+|.||.|-...++ ..+..+|||+++.             ++.++. + |    -++.+.+++.-.++.+
T Consensus        89 ~Ry~i~~~lGeGtFGkV~ec~D~-~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiC  167 (415)
T KOG0671|consen   89 NRYEIVDLLGEGTFGKVVECWDR-ETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHIC  167 (415)
T ss_pred             cceehhhhhcCCcccceEEEeec-CCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceE
Confidence            47999999999999999999876 4588999998872             555552 1 2    3567778888899999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecC-------------------
Q 042690           85 LVYKFMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHD-------------------  132 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~-------------------  132 (266)
                      +|+|.+ |.|+.++++.+.-  +      .+..++..++..+|..+++|-     ||++-.                   
T Consensus       168 ivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~  246 (415)
T KOG0671|consen  168 IVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPL  246 (415)
T ss_pred             EEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccC
Confidence            999988 5599999987543  2      234566777777776666654     877642                   


Q ss_pred             -CCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------
Q 042690          133 -YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------  202 (266)
Q Consensus       133 -~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------  202 (266)
                       +..++++|||.|+...    .-+.....|..|.|||++.+-+|+.++||||+|||+.|+.||...|+...         
T Consensus       247 ks~~I~vIDFGsAtf~~----e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMe  322 (415)
T KOG0671|consen  247 KSTAIKVIDFGSATFDH----EHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMME  322 (415)
T ss_pred             CCcceEEEecCCcceec----cCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHH
Confidence             2357999999998753    22345567999999999999999999999999999999999999887611         


Q ss_pred             ----------------------------------------------------CccccchHHHHHHHhhhcCCCCCCCHHH
Q 042690          203 ----------------------------------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRI  230 (266)
Q Consensus       203 ----------------------------------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~  230 (266)
                                                                          ....-.++.++++.||..||.+|+|+.|
T Consensus       323 rIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~E  402 (415)
T KOG0671|consen  323 RILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLRE  402 (415)
T ss_pred             HhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHH
Confidence                                                                0112245667999999999999999998


Q ss_pred             HHH
Q 042690          231 VAL  233 (266)
Q Consensus       231 il~  233 (266)
                      ++.
T Consensus       403 AL~  405 (415)
T KOG0671|consen  403 ALS  405 (415)
T ss_pred             Hhc
Confidence            874

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.94  E-value=2e-27  Score=202.93  Aligned_cols=201  Identities=21%  Similarity=0.296  Sum_probs=163.4

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.-.+.||+|.||+||-|.++ .+|+.||+|.+.+                +++.+.||.||.+--.+++.+..++|||-
T Consensus       566 if~devLGSGQFG~VYgg~hR-ktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEK  644 (888)
T KOG4236|consen  566 IFADEVLGSGQFGTVYGGKHR-KTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEK  644 (888)
T ss_pred             hhhHhhccCCcceeeecceec-ccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehh
Confidence            445678999999999999987 7899999998873                88899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC---CEEEEeecCcceeecccccc
Q 042690           90 MHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY---FTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        90 ~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~---~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +.| +..+.|...  +++.      ...++..+++++|..++.|.     |+|+...   -.+||||||+|+....  ..
T Consensus       645 l~G-DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgE--ks  721 (888)
T KOG4236|consen  645 LHG-DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGE--KS  721 (888)
T ss_pred             hcc-hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecch--hh
Confidence            987 555544432  3332      33556677788998888887     8988754   3789999999998753  33


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------ccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------~~~~~~~~~l~~~  216 (266)
                      -.....||+.|+|||++++..|+..-||||+|+|+|.-++|..||+++..                 .+.....+++|..
T Consensus       722 FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~eis~~AidlIn~  801 (888)
T KOG4236|consen  722 FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEISPEAIDLINN  801 (888)
T ss_pred             hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCchhhcCHHHHHHHHH
Confidence            33457899999999999999999999999999999999999999988321                 2345667889999


Q ss_pred             hhhcCCCCCCCHHH
Q 042690          217 FVKEKPPLRPSLRI  230 (266)
Q Consensus       217 cl~~~p~~Rps~~~  230 (266)
                      .|+.+-.+|-|.+.
T Consensus       802 LLqVkm~kRysvdk  815 (888)
T KOG4236|consen  802 LLQVKMRKRYSVDK  815 (888)
T ss_pred             HHHHHHHHhcchHh
Confidence            99988888888653

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-27  Score=198.30  Aligned_cols=207  Identities=19%  Similarity=0.209  Sum_probs=160.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------------HHhhhcCCCceeeeeeEEE-eCCe
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------------KVVHVAHHKNLVCLLGYHI-EQEC   82 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------------~~l~~~~h~~iv~~~~~~~-~~~~   82 (266)
                      .|-++..||.|+|+.||+|.+. ...+.||+|+-.                     .+.+.++||.||++||++. +...
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl-~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtds  542 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDL-TEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDS  542 (775)
T ss_pred             HHHHHHHhccccHHHHHHhccc-chhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecccc
Confidence            5668899999999999999975 567778887643                     3778999999999999986 4557


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHH-------------HHhhhcCccccceeecC---CCEEEEeecCccee
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI-------------RDCWRTRALACRILLHD---YFTVETSDLGLAKL  146 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~-------------~~~~~~~~~h~nili~~---~~~~~l~Dfg~a~~  146 (266)
                      ++-|+|||+|.+|.-|++++...+..+...+++             ..++|-+..+.|||+-+   .|.+|+.|||+++.
T Consensus       543 FCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKI  622 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKI  622 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhh
Confidence            899999999999999999877655554444443             23456666677998854   47899999999998


Q ss_pred             ecccccc------ccccccCCCCcCCccccCCC----CCCcccchhhHHHHHHHHHhCCCcccC----------------
Q 042690          147 LMINQTQ------TLTGMRETKGYLPPEWFRNM----PVTVKVDVYSFGVMLLEIISCRCVERQ----------------  200 (266)
Q Consensus       147 ~~~~~~~------~~~~~~~~~~y~aPE~~~~~----~~~~~~Di~slG~i~~~l~tg~~p~~~----------------  200 (266)
                      +..+...      ..+-..||++|++||.+.-+    ..+.+.||||+|+|+|..+.|+.||-.                
T Consensus       623 MdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkA  702 (775)
T KOG1151|consen  623 MDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKA  702 (775)
T ss_pred             ccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcc
Confidence            7533211      11235689999999976422    268899999999999999999999965                


Q ss_pred             -----CCCccccchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          201 -----GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       201 -----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                           ...|....+..++|++||++.-..|...-++.
T Consensus       703 tEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  703 TEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             eeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence                 22344556778899999999988887766554

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=8.6e-27  Score=200.74  Aligned_cols=175  Identities=15%  Similarity=0.192  Sum_probs=147.8

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------------HhhhcC---CCceeeeee
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------------VVHVAH---HKNLVCLLG   75 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------------~l~~~~---h~~iv~~~~   75 (266)
                      .+++.|..++++|+|+||.|+.+.++ .....|+||.+.+                      +|..++   |+||+++++
T Consensus       558 ~k~s~yttlq~lG~GAyGkV~lai~K-~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLd  636 (772)
T KOG1152|consen  558 KKFSDYTTLQPLGEGAYGKVNLAIHK-ENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLD  636 (772)
T ss_pred             cccccceeeeeccccccceEEEeeec-ccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhh
Confidence            45778999999999999999999987 5578899998773                      777776   999999999


Q ss_pred             EEEeCCeEEEEEEcC-CCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCc
Q 042690           76 YHIEQECRLLVYKFM-HNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        76 ~~~~~~~~~lv~e~~-~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      +|++++.+||+||-- ++-+|.++|.-..+..      +..++....+++|..+++|+     |++++.+|-+||+|||.
T Consensus       637 fFEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgs  716 (772)
T KOG1152|consen  637 FFEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGS  716 (772)
T ss_pred             eeecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccc
Confidence            999999999999865 4678999998655433      45667777788888888888     89999999999999999


Q ss_pred             ceeeccccccccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCccc
Q 042690          144 AKLLMINQTQTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVER  199 (266)
Q Consensus       144 a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~  199 (266)
                      |.+..   +.+.....||..|.|||++.|..| ....|||++|+++|.++..+.|+.
T Consensus       717 aa~~k---sgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  717 AAYTK---SGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhhc---CCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            98753   334445779999999999998886 567999999999999999888875

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=5.6e-27  Score=181.44  Aligned_cols=211  Identities=15%  Similarity=0.233  Sum_probs=166.0

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC-CCceeeeeeEEEeCC--eEEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH-HKNLVCLLGYHIEQE--CRLL   85 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~-h~~iv~~~~~~~~~~--~~~l   85 (266)
                      +|+.++|++.+++|.|.|+.||.|... .++..++||.++           ++++.+. ||||++++++..++.  ...|
T Consensus        34 wg~~ddYeivrk~GRGKYSEVFeg~~~-~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   34 WGNQDDYEIVRKVGRGKYSEVFEGINI-TNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             ccccchHHHHHHHcCccHhhHhccccc-CCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            478889999999999999999999965 455566666655           4777776 999999999987754  4679


Q ss_pred             EEEcCCCCCHHHHHhhcCC---CCHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeeccccccccc
Q 042690           86 VYKFMHNRSISSLLYECLR---PTWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ++||+++.++.+....-.-   .-+..++..++++||++|++|+     |++|+. ...++|+|||+|.......  .-.
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~--eYn  190 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK--EYN  190 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCc--eee
Confidence            9999999877766543222   3456788889999999999998     899974 5789999999998875332  222


Q ss_pred             cccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------------
Q 042690          157 GMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------------  202 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------------  202 (266)
                      -...+..|-.||.+... .++++-|+|||||++..|+..+.||..+.                                 
T Consensus       191 VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~  270 (338)
T KOG0668|consen  191 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQF  270 (338)
T ss_pred             eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhH
Confidence            34567788999987654 48899999999999999999998886611                                 


Q ss_pred             --------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 --------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 --------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                          ..-..++.++++.+.|.+|-.+|+|+.|.+.
T Consensus       271 ~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  271 EDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             hhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence                                1113367788999999999999999988763

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.93  E-value=7.5e-26  Score=187.20  Aligned_cols=214  Identities=18%  Similarity=0.260  Sum_probs=168.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHHH---------------HhhhcCCCceeeeeeEEEeC-CeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLDK---------------VVHVAHHKNLVCLLGYHIEQ-ECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~~---------------~l~~~~h~~iv~~~~~~~~~-~~~~   84 (266)
                      .+.....+-+|.||.||.|.|+.    .+.+.+-+|.++.               ++....|||++.+.+++..+ ...+
T Consensus       285 Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~  364 (563)
T KOG1024|consen  285 RVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPF  364 (563)
T ss_pred             heechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcce
Confidence            46666777889999999998862    3455667777763               55577899999999998654 4577


Q ss_pred             EEEEcCCCCCHHHHHhhcCC--------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           85 LVYKFMHNRSISSLLYECLR--------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~--------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      +++.++..|+|.+++...+.              .....++..++.++|.++++|.     |-+|++.-.+||+|-.+++
T Consensus       365 V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSR  444 (563)
T KOG1024|consen  365 VLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSR  444 (563)
T ss_pred             EEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEeccchhcc
Confidence            88999999999999983211              2344667777899998888886     8899999999999999988


Q ss_pred             eecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCcccc
Q 042690          146 LLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTL  207 (266)
Q Consensus       146 ~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~  207 (266)
                      -+.+.+-. -..+.-....||+||.+.+..|+.++|+||||+++|||+| |+.|+.+                ..+-..+
T Consensus       445 DLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGyRlaQP~NCP  524 (563)
T KOG1024|consen  445 DLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGYRLAQPFNCP  524 (563)
T ss_pred             ccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccceecCCCCCc
Confidence            65432111 1112234678999999999999999999999999999998 6778876                2244456


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      .++..++.=||...|++||+++++...|.+.
T Consensus       525 DeLf~vMacCWallpeeRPsf~Qlv~cLseF  555 (563)
T KOG1024|consen  525 DELFTVMACCWALLPEERPSFSQLVICLSEF  555 (563)
T ss_pred             HHHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            7788899999999999999999999998765

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.93  E-value=3.2e-27  Score=206.21  Aligned_cols=208  Identities=14%  Similarity=0.139  Sum_probs=166.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------HhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .-.+|+++.++|+|+||.|||++++ ..+...|+|.++-              +++..+||||+-+++-+......|+.|
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~-~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDK-RSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CccchhheeeecCCcccchhhhccc-ccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            3468999999999999999999976 5677788887761              777889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCCHH---HHHH---HHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPTWQ---QRMQ---DCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~~---~~l~---~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |||.+|+|.+...-.+.++..   ..++   ..+.++|+.+-+|+     ||++++.|.+||+|||.+-.... ......
T Consensus        92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqita-ti~Krk  170 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITA-TIAKRK  170 (829)
T ss_pred             EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhh-hhhhhh
Confidence            999999999987755554332   2222   22267777776676     99999999999999999876542 222345


Q ss_pred             cccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccC--------------------CCCccccchHHHH
Q 042690          157 GMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQ--------------------GSDPKTLEKPVMI  213 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~--------------------~~~~~~~~~~~~l  213 (266)
                      ..+||+.|||||+..   .+.|+..+|+|++|+...|+-.-++|...                    .....+.+-+-++
T Consensus       171 sfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~f  250 (829)
T KOG0576|consen  171 SFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNF  250 (829)
T ss_pred             cccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHH
Confidence            688999999999653   55688999999999999999888877655                    2234466777889


Q ss_pred             HHHhhhcCCCCCCCHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIV  231 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~i  231 (266)
                      ++.|+.-+|.+||+++.+
T Consensus       251 vK~altknpKkRptaekl  268 (829)
T KOG0576|consen  251 VKGALTKNPKKRPTAEKL  268 (829)
T ss_pred             HHHHhcCCCccCCChhhh
Confidence            999999999999998654

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=6.4e-25  Score=194.91  Aligned_cols=211  Identities=17%  Similarity=0.156  Sum_probs=146.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc---------------CCCcceeeeeeHHH---------------------------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA---------------PGDKTNIGVKKLDK---------------------------   60 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~---------------~~~~~~vaiK~~~~---------------------------   60 (266)
                      ..+|.+.++||+|+||+||+|...               ...++.||||++..                           
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            468999999999999999999742               12456799998641                           


Q ss_pred             -HhhhcCCCc-----eeeeeeEEEe--------CCeEEEEEEcCCCCCHHHHHhhcCC----------------------
Q 042690           61 -VVHVAHHKN-----LVCLLGYHIE--------QECRLLVYKFMHNRSISSLLYECLR----------------------  104 (266)
Q Consensus        61 -~l~~~~h~~-----iv~~~~~~~~--------~~~~~lv~e~~~~~~L~~~l~~~~~----------------------  104 (266)
                       .+..++|.+     ++++++++..        .+..|+||||+.+++|.+++.....                      
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence             222344443     3667777643        3568999999999999999864210                      


Q ss_pred             --------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccC
Q 042690          105 --------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR  171 (266)
Q Consensus       105 --------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~  171 (266)
                              ..+..++..++.++|..+++|+     ||+++.++.++|+|||++...............+++.|+|||.+.
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~  383 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELV  383 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhc
Confidence                    0123445556678888887777     899999999999999999764322211222234478999999875


Q ss_pred             CCCC----------------------CcccchhhHHHHHHHHHhCCC-cccCC---------------------------
Q 042690          172 NMPV----------------------TVKVDVYSFGVMLLEIISCRC-VERQG---------------------------  201 (266)
Q Consensus       172 ~~~~----------------------~~~~Di~slG~i~~~l~tg~~-p~~~~---------------------------  201 (266)
                      ....                      ....|+||+||++++|+++.. |+...                           
T Consensus       384 ~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~  463 (507)
T PLN03224        384 MPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDF  463 (507)
T ss_pred             CCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCc
Confidence            3211                      124699999999999999875 55320                           


Q ss_pred             -CCccccchHHHHHHHhhhcCC---CCCCCHHHHHH
Q 042690          202 -SDPKTLEKPVMIAIQFVKEKP---PLRPSLRIVAL  233 (266)
Q Consensus       202 -~~~~~~~~~~~l~~~cl~~~p---~~Rps~~~il~  233 (266)
                       ..........+++.+++..+|   .+|+|++++++
T Consensus       464 ~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        464 SLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             ccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence             001123456779999998765   67999998874

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.4e-26  Score=186.20  Aligned_cols=203  Identities=16%  Similarity=0.195  Sum_probs=165.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhh-cCCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHV-AHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~-~~h~~iv~~~~~~~~~~~~   83 (266)
                      +..+|.+++.||.|+|.+|..++++ .+.+.+|+|++++                 +..+ -+||.+|-+..++.++..+
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~-~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrl  326 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLK-KTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRL  326 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehc-ccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceE
Confidence            3567899999999999999999986 7888999999884                 2223 3589999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++|.||++||+|--++.+..++.      +...+..++.++|.++++-+     |+|++..|.+||.|+|+++... ...
T Consensus       327 ffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l-~~g  405 (593)
T KOG0695|consen  327 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL-GPG  405 (593)
T ss_pred             EEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCC-CCC
Confidence            99999999999988887655544      33556677788888888866     9999999999999999998643 344


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------------CCCccccch
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------------GSDPKTLEK  209 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------------~~~~~~~~~  209 (266)
                      ...+...||+.|.|||.+++..|....|-|+||++++||+.|+.||.-                       ..+...+..
T Consensus       406 d~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiriprslsvk  485 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPRSLSVK  485 (593)
T ss_pred             cccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccceeehh
Confidence            455678999999999999999999999999999999999999999954                       111112223


Q ss_pred             HHHHHHHhhhcCCCCCC
Q 042690          210 PVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rp  226 (266)
                      ...++...|+-||.+|-
T Consensus       486 as~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  486 ASHVLKGFLNKDPKERL  502 (593)
T ss_pred             hHHHHHHhhcCCcHHhc
Confidence            33477788899998874

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-26  Score=206.14  Aligned_cols=203  Identities=19%  Similarity=0.271  Sum_probs=159.1

Q ss_pred             eeeeeccCCCcce-EEEEEEEcCCCcceeeeeeHHH-----------Hhh-hcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           26 IYSLKKPCGGSFS-TVYTGVLAPGDKTNIGVKKLDK-----------VVH-VAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        26 ~~~~~~ig~G~~g-~V~~~~~~~~~~~~vaiK~~~~-----------~l~-~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.-.+.+|.|+.| .||+|..   ++++||+|++..           .++ .-.|||||++|+...+++..|+..|.|.-
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y---e~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~  587 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY---EGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC  587 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee---CCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh
Confidence            3344567888876 7999997   789999999873           233 23599999999999999999999999976


Q ss_pred             CCHHHHHhhcCC----------CCHHHHHHHHHHHhhhcCcccc-----ceeecC---C--CEEEEeecCcceeeccccc
Q 042690           93 RSISSLLYECLR----------PTWQQRMQDCIRDCWRTRALAC-----RILLHD---Y--FTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        93 ~~L~~~l~~~~~----------~~~~~~l~~~~~~~~~~~~~h~-----nili~~---~--~~~~l~Dfg~a~~~~~~~~  152 (266)
                       +|.+++.....          .....+....+.++|..+++|+     ||||..   +  ..++|+|||+++.+..+..
T Consensus       588 -sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~s  666 (903)
T KOG1027|consen  588 -SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKS  666 (903)
T ss_pred             -hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcc
Confidence             99999986311          2334556666788888888887     899986   3  4689999999998764433


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhC-CCcccCCCCc--------------cccc--hHHHH
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISC-RCVERQGSDP--------------KTLE--KPVMI  213 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg-~~p~~~~~~~--------------~~~~--~~~~l  213 (266)
                      .  ...+..||-+|+|||++....-+.+.||||+||++|+.++| ..||-.....              ....  +..++
T Consensus       667 S~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~eA~dL  746 (903)
T KOG1027|consen  667 SFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNYTLVHLEPLPDCEAKDL  746 (903)
T ss_pred             hhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCccceeeeccCchHHHHHH
Confidence            3  34567899999999999988888899999999999999997 6688551100              0011  66789


Q ss_pred             HHHhhhcCCCCCCCHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il  232 (266)
                      |.+|+.++|..||++.+++
T Consensus       747 I~~ml~~dP~~RPsa~~VL  765 (903)
T KOG1027|consen  747 ISRMLNPDPQLRPSATDVL  765 (903)
T ss_pred             HHHhcCCCcccCCCHHHHh
Confidence            9999999999999999885

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.93  E-value=6.6e-27  Score=199.36  Aligned_cols=171  Identities=17%  Similarity=0.218  Sum_probs=143.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC------CCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH------HKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~------h~~iv~~~~~~~~~~~~~l   85 (266)
                      .|.+....|+|=|++|.+|... ..++.||||++.             ++|+++.      --++++++-.|...++++|
T Consensus       433 RY~V~~~~GkGvFs~Vvra~D~-~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl  511 (752)
T KOG0670|consen  433 RYEVQGYTGKGVFSTVVRARDQ-ARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL  511 (752)
T ss_pred             eeEEEeccccceeeeeeecccc-CCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence            4667778899999999999975 566799999987             3666664      2378899999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC---------CCHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeeccc
Q 042690           86 VYKFMHNRSISSLLYECLR---------PTWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMIN  150 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~---------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~  150 (266)
                      |+|...- +|.++++..+.         ..+.++|.++++.+...+++|.     |||+++. ..+||||||.|.....+
T Consensus       512 VFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~en  590 (752)
T KOG0670|consen  512 VFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASEN  590 (752)
T ss_pred             Eehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccccc
Confidence            9998865 99999997655         3578999999988877777776     9999875 57899999999876533


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      +   .+.+.-+..|.|||.+.|.+|++..|+||+||.+|||.||+..|++
T Consensus       591 e---itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG  637 (752)
T KOG0670|consen  591 E---ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPG  637 (752)
T ss_pred             c---ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCC
Confidence            2   3345567889999999999999999999999999999999999888

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-25  Score=171.72  Aligned_cols=172  Identities=16%  Similarity=0.185  Sum_probs=132.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .+.-+..||.|++|.|-+.++. ..+...|+|++..                .++....|.+|.+||.....+..|+.||
T Consensus        47 ~L~~i~elGrGayG~vekmrh~-~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME  125 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHI-QSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICME  125 (282)
T ss_pred             hhhhhhhhcCCccchhhheeec-cCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHH
Confidence            4556778999999999999886 6788999999872                4445578999999999999999999999


Q ss_pred             cCCCCCHHHHHhh----cCCCCHH----------HHHHHHH--HHhhhcCccccceeecCCCEEEEeecCcceeeccccc
Q 042690           89 FMHNRSISSLLYE----CLRPTWQ----------QRMQDCI--RDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~----~~~~~~~----------~~l~~~~--~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      .|.. ||..+-++    .+.....          +.+-.++  -.++|+++.++||||+.+|.+|+||||++.++...  
T Consensus       126 ~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dS--  202 (282)
T KOG0984|consen  126 LMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDS--  202 (282)
T ss_pred             Hhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhh--
Confidence            9965 88876653    2222211          1111111  23457788888999999999999999999987532  


Q ss_pred             cccccccCCCCcCCccccCC----CCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          153 QTLTGMRETKGYLPPEWFRN----MPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~----~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      ...+-..|...|||||.+..    ..|+.++||||||+++.||.+++.|+..
T Consensus       203 iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  203 IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence            22222457889999998753    3588999999999999999999999865

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-25  Score=181.80  Aligned_cols=212  Identities=18%  Similarity=0.176  Sum_probs=159.2

Q ss_pred             cccCcee--eeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------Hhhhc-CCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIY--SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~--~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      |.|.+++  ..+.||+|+|+.|--++.. .++.+||+|++.+              ++.+. .|+||+.++++|+++..+
T Consensus        73 g~F~d~YkLt~e~LGeGAyasVqtcv~i-~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~F  151 (463)
T KOG0607|consen   73 GKFEDMYKLTSELLGEGAYASVQTCVSI-QTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRF  151 (463)
T ss_pred             chHHHHHHhHHHHhcCccceeeeeeeee-ccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceE
Confidence            4444444  2357899999999988865 6888999999873              33344 499999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecCcceeecc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLGLAKLLMI  149 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg~a~~~~~  149 (266)
                      |||||-+.||+|.++|.+...+..      .+.+..+++.+|..+|.|+     |||-....   -+|||||.++.-...
T Consensus       152 YLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~  231 (463)
T KOG0607|consen  152 YLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKL  231 (463)
T ss_pred             EEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeecccccccccc
Confidence            999999999999999987766543      3445666777777777776     77766544   469999988764321


Q ss_pred             c--c----ccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------
Q 042690          150 N--Q----TQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------  202 (266)
Q Consensus       150 ~--~----~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------  202 (266)
                      +  -    +.......|+-.|||||+..     ..-|+.++|.||||+|+|-|++|-+||.+..                
T Consensus       232 ~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ  311 (463)
T KOG0607|consen  232 NNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQ  311 (463)
T ss_pred             CCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHH
Confidence            1  1    11223367888999999653     2348899999999999999999999998711                


Q ss_pred             --------------Cc----cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 --------------DP----KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 --------------~~----~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    +.    ..+.+..+++...+..++..|-++..+++
T Consensus       312 ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  312 NKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             HHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence                          11    12344456888899999999999888876

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.3e-25  Score=191.68  Aligned_cols=183  Identities=17%  Similarity=0.179  Sum_probs=146.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +-+-|..++.||-|+||.|.+++-. ++...||.|.++                 ++|...+++-||++|-.|.+...+|
T Consensus       627 dKSmFvkik~iGvGAFGeV~Lv~Kv-DT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLY  705 (1034)
T KOG0608|consen  627 DKSMFVKIKTIGVGAFGEVCLVRKV-DTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLY  705 (1034)
T ss_pred             cccceEEEeeecccccceeEEEeec-chhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceE
Confidence            4456888999999999999999854 445556666555                 5888999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec-----
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM-----  148 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~-----  148 (266)
                      +||+|++||++-.++-+.+-+.      +...+..++..+|.+++||+     |||||.+|.+||.|||++.-+.     
T Consensus       706 FVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHds  785 (1034)
T KOG0608|consen  706 FVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  785 (1034)
T ss_pred             EEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceecccc
Confidence            9999999999999887765543      33455566678888888877     9999999999999999986421     


Q ss_pred             ----cc----------------cc--------------c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHH
Q 042690          149 ----IN----------------QT--------------Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEII  192 (266)
Q Consensus       149 ----~~----------------~~--------------~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~  192 (266)
                          ..                .+              .  ......||+.|+|||++....++..+|.||.|+|+|||+
T Consensus       786 kYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  786 KYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             ccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHh
Confidence                00                00              0  001247999999999999888999999999999999999


Q ss_pred             hCCCcccCCCCcc
Q 042690          193 SCRCVERQGSDPK  205 (266)
Q Consensus       193 tg~~p~~~~~~~~  205 (266)
                      .|++||..+.+.+
T Consensus       866 ~g~~pf~~~tp~~  878 (1034)
T KOG0608|consen  866 VGQPPFLADTPGE  878 (1034)
T ss_pred             hCCCCccCCCCCc
Confidence            9999998765544

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-26  Score=180.20  Aligned_cols=174  Identities=18%  Similarity=0.259  Sum_probs=141.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----eE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----CR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----~~   83 (266)
                      +++=.+.||-|+||.||.+.+ +.+++.+++|++-                +++-.++|.|++..+|+.....     ++
T Consensus        54 Di~PDRPIGYGAFGVVWsVTD-PRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEi  132 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTD-PRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQEL  132 (449)
T ss_pred             cCCCCCcccccceeEEEeccC-CCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHH
Confidence            455678999999999999885 4688899998775                3566779999999999875443     46


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+++|.+.. +|+..|-.-+.++      +..++...++++|+.+++|+     |.+++.|-.+|+||||+++....++.
T Consensus       133 YV~TELmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~  211 (449)
T KOG0664|consen  133 YVLTELMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDR  211 (449)
T ss_pred             HHHHHHHHh-hhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhh
Confidence            788998866 8888887555433      44566666788888888777     89999999999999999998776666


Q ss_pred             cccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccC
Q 042690          153 QTLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      ...+...-|..|.|||.+.|.+ |+.+.||||+|||+.||+.++-.|..
T Consensus       212 ~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQA  260 (449)
T KOG0664|consen  212 LNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQA  260 (449)
T ss_pred             hhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhc
Confidence            6666677789999999888765 89999999999999999988887765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.91  E-value=6e-25  Score=174.36  Aligned_cols=209  Identities=16%  Similarity=0.241  Sum_probs=162.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++.+.++.+|.+...|..|+|+|   ++..++.|++.                ..++.+.||||+.+++.|.++..+.+
T Consensus       188 d~~~lnl~tkl~e~hsgelwrgrw---qgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~  264 (448)
T KOG0195|consen  188 DVSSLNLITKLAESHSGELWRGRW---QGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVI  264 (448)
T ss_pred             chhhhhhhhhhccCCCcccccccc---cCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceE
Confidence            566778888999999999999999   56666667665                26778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC--CCHHHHHHHHHHHhhhcCcccc-------------ceeecCCCEEEEeecCcceeeccc
Q 042690           86 VYKFMHNRSISSLLYECLR--PTWQQRMQDCIRDCWRTRALAC-------------RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~h~-------------nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      +..|++.|+|..++++...  ..-.+.+..+++...++.++|.             .++||++.+.++. .+-++..   
T Consensus       265 isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltaris-mad~kfs---  340 (448)
T KOG0195|consen  265 ISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARIS-MADTKFS---  340 (448)
T ss_pred             eeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhhee-cccceee---
Confidence            9999999999999986543  3334455555555555555554             4788888766654 1112211   


Q ss_pred             cccccccccCCCCcCCccccCCCCCC---cccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVT---VKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKP  210 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~---~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~  210 (266)
                        ....+..-.+.||+||.++..+.+   .++|+|||++++|||.|++.||.+                 ..+|.....+
T Consensus       341 --fqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ippgis~hm  418 (448)
T KOG0195|consen  341 --FQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHM  418 (448)
T ss_pred             --eeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCCCCccHHH
Confidence              122234457899999988766533   479999999999999999999987                 3466777888


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                      .+++.-|+..||.+||.++.|+-.|+++.
T Consensus       419 ~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  419 NKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             HHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence            89999999999999999999999998864

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.91  E-value=6.4e-23  Score=162.63  Aligned_cols=185  Identities=23%  Similarity=0.339  Sum_probs=151.6

Q ss_pred             cCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHH
Q 042690           32 PCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSIS   96 (266)
Q Consensus        32 ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   96 (266)
                      ||+|++|.||++... ..+..+++|...               ..++.++|++++++++++......+++||++.+++|.
T Consensus         1 l~~g~~~~v~~~~~~-~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDK-KTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEec-CCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            689999999999974 347788887654               3666788999999999999888999999999989999


Q ss_pred             HHHhhc-CC------CCHHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeeccccccccccccCCCC
Q 042690           97 SLLYEC-LR------PTWQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQTQTLTGMRETKG  163 (266)
Q Consensus        97 ~~l~~~-~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  163 (266)
                      +++... ..      ..+..++..++..+|..++.|.     ||+++. ++.++|+|||.+........ ......+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~  158 (215)
T cd00180          80 DLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS-LLKTIVGTPA  158 (215)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc-hhhcccCCCC
Confidence            999765 22      2344566666678887777776     899999 89999999999987542221 1233556889


Q ss_pred             cCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          164 YLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       164 y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      |++||..... ..+.++|+|++|++++++                ..+.+++..|++.+|.+||+++++++.
T Consensus       159 ~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         159 YMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             ccChhHhcccCCCCchhhhHHHHHHHHHH----------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence            9999988776 678899999999999999                688999999999999999999998864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.90  E-value=3.6e-24  Score=173.00  Aligned_cols=208  Identities=20%  Similarity=0.201  Sum_probs=163.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE------   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~------   81 (266)
                      ..|..++.+|.|.- .|-.|.+. -.+++|++|+..                .++..+.|+||++++.++.-..      
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~-v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQ-VLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchh-hccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHH
Confidence            46778889999988 55555543 578889998876                3777889999999999986443      


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC---C-CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECL---R-PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~---~-~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ..|+|||++.. +|.+++....   + ..+..++..+.+++|+.+++|+     ||++..+..+|+.|||+|+...  .+
T Consensus        95 e~y~v~e~m~~-nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~--~~  171 (369)
T KOG0665|consen   95 EVYLVMELMDA-NLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTED--TD  171 (369)
T ss_pred             hHHHHHHhhhh-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccC--cc
Confidence            57999999976 9999887321   1 2244556666688888888877     9999999999999999998753  22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------------------  202 (266)
                      ...+....+..|.|||.+.+..+...+||||+||++.||++|...|++..                              
T Consensus       172 ~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~y  251 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNY  251 (369)
T ss_pred             cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHH
Confidence            46667888999999999998889999999999999999999999887700                              


Q ss_pred             ---------------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HH
Q 042690          203 ---------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQ  236 (266)
Q Consensus       203 ---------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~  236 (266)
                                                 ++.......+++.+||-.||++|-|++++|+-  ++
T Consensus       252 v~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  252 VENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             hhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence                                       11112233459999999999999999999853  55

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.89  E-value=5.5e-23  Score=159.96  Aligned_cols=139  Identities=15%  Similarity=0.113  Sum_probs=108.5

Q ss_pred             CCHHHHHhhcC-CCCHH------HHHHHHHHHhhhcCccccceeecCCCEEEEeecCcceeeccccccccccccCCCCcC
Q 042690           93 RSISSLLYECL-RPTWQ------QRMQDCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL  165 (266)
Q Consensus        93 ~~L~~~l~~~~-~~~~~------~~l~~~~~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~  165 (266)
                      |+|.+++...+ .+++.      .++..++.++|..+ .+.||+++.++.+++  ||++......      ...+++.||
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~-kp~Nil~~~~~~~~~--fG~~~~~~~~------~~~g~~~y~   71 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA-KSGNILLTWDGLLKL--DGSVAFKTPE------QSRVDPYFM   71 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-CcccEeEcCccceee--ccceEeeccc------cCCCccccc
Confidence            68999998643 35544      44555557777776 667999999999999  9998865421      125789999


Q ss_pred             CccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccccc--hHHHHHHHhhhc
Q 042690          166 PPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTLE--KPVMIAIQFVKE  220 (266)
Q Consensus       166 aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~~--~~~~l~~~cl~~  220 (266)
                      |||++.+..++.++|||||||++|+|+||+.||.....                       .....  .+.+++.+||+.
T Consensus        72 aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~  151 (176)
T smart00750       72 APEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASR  151 (176)
T ss_pred             ChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhc
Confidence            99999998999999999999999999999999865110                       01111  578999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh
Q 042690          221 KPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~~~  240 (266)
                      +|.+||++.++++.+.....
T Consensus       152 ~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      152 LPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             ccccccCHHHHHHHHHHHHH
Confidence            99999999999998766543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.89  E-value=2.8e-22  Score=161.27  Aligned_cols=174  Identities=23%  Similarity=0.262  Sum_probs=139.1

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      |.+.+.||+|+++.||++... .++..+++|...               +.++.++|+|++++++.+......++++|++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~-~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDK-GTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEc-CCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEecc
Confidence            456789999999999999985 456788888764               2566779999999999999888999999999


Q ss_pred             CCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           91 HNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        91 ~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      .+++|.+++..... ++      +..++..++..+|..++.|.     |++++.++.++|+|||.+..............
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221       80 EGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccce
Confidence            99999999976543 33      33445555567777776666     89999999999999999987653321122345


Q ss_pred             cCCCCcCCcccc-CCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          159 RETKGYLPPEWF-RNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       159 ~~~~~y~aPE~~-~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      .++..|++||.. ....++.++|+|+||+++++|++|+.||..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            577889999988 666778899999999999999999999954

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.8e-21  Score=165.13  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC-----C---CceeeeeeEEEe---
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH-----H---KNLVCLLGYHIE---   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~-----h---~~iv~~~~~~~~---   79 (266)
                      +.|.+.++||.|.|++||++.+. ...+.||+|+.+             ++++.++     |   .+||+++|.|..   
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDt-q~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDT-QNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             ceEEEEEeccccccceeEEEeec-cCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            46999999999999999999975 678899999887             2454442     3   489999999975   


Q ss_pred             -CCeEEEEEEcCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhh
Q 042690           80 -QECRLLVYKFMHNRSISSLLYECL--RP------TWQQRMQDCIRDCW  119 (266)
Q Consensus        80 -~~~~~lv~e~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~  119 (266)
                       ..+.++|+|+. |.+|..+|....  .+      ++.+++...++++|
T Consensus       157 NG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH  204 (590)
T KOG1290|consen  157 NGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLH  204 (590)
T ss_pred             CCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence             34789999998 669999998532  22      34445555555554

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.5e-22  Score=160.54  Aligned_cols=206  Identities=17%  Similarity=0.198  Sum_probs=156.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------Hhhhc-------CCCceeeeeeE-EEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------VVHVA-------HHKNLVCLLGY-HIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------~l~~~-------~h~~iv~~~~~-~~~~~~~~lv~e   88 (266)
                      +.|.+.+.+|+|-||++.++.++ +.+..+++|.+..       ..+.+       .|.||+.-|++ |.+.+.+++++|
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr-~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHR-QSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeecc-CCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            46889999999999999999988 7788899997763       33322       48899998887 455667889999


Q ss_pred             cCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecC--CCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHD--YFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~--~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |++.|+|.+-+...+-     ....+++..++...|+.+++|+     ||||-.  .-.+||||||..+..    +....
T Consensus       103 ~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~----g~tV~  178 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKV----GTTVK  178 (378)
T ss_pred             cCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeeccccccc----Cceeh
Confidence            9999999998876443     3466888889999998888888     777753  348999999998763    23333


Q ss_pred             cccCCCCcCCccccC---CC--CCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------Cccccc
Q 042690          157 GMRETKGYLPPEWFR---NM--PVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------DPKTLE  208 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~---~~--~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------~~~~~~  208 (266)
                      ...-+..|.+||...   ++  ..++.+|+|.||++++..+||..||+...                       .....+
T Consensus       179 ~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~  258 (378)
T KOG1345|consen  179 YLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSE  258 (378)
T ss_pred             hhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCH
Confidence            444577899999654   22  24778999999999999999999997621                       112345


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ..+++.++.+.+++.+|=...+.-++
T Consensus       259 ~a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  259 KALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHH
Confidence            66778888999999998444444333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=3.4e-22  Score=188.95  Aligned_cols=171  Identities=16%  Similarity=0.211  Sum_probs=122.3

Q ss_pred             hhhcCC-CceeeeeeEEE-------eCCeEEEEEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc
Q 042690           62 VHVAHH-KNLVCLLGYHI-------EQECRLLVYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC  126 (266)
Q Consensus        62 l~~~~h-~~iv~~~~~~~-------~~~~~~lv~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~  126 (266)
                      .+.++| +||.+++|.+.       ....++.++|++ +++|.+++.... .      ..+..++..++.++|..+++|+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHr  104 (793)
T PLN00181         26 SKSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVH  104 (793)
T ss_pred             cchhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            456667 68888888772       234577889987 459999997432 2      2355677788899998888888


Q ss_pred             -----ceeecCC-------------------CEEEEeecCcceeeccccc---------------cccccccCCCCcCCc
Q 042690          127 -----RILLHDY-------------------FTVETSDLGLAKLLMINQT---------------QTLTGMRETKGYLPP  167 (266)
Q Consensus       127 -----nili~~~-------------------~~~~l~Dfg~a~~~~~~~~---------------~~~~~~~~~~~y~aP  167 (266)
                           |||++..                   +.+|++|||+++.......               .......+|+.||||
T Consensus       105 DlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP  184 (793)
T PLN00181        105 NVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSP  184 (793)
T ss_pred             cCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceECh
Confidence                 8999654                   4455666666653210000               000113578889999


Q ss_pred             cccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------Cc---cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          168 EWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------DP---KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       168 E~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------~~---~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      |++.+..++.++|||||||++|||++|..|+....           ++   ........++.+||..+|.+||++.++++
T Consensus       185 E~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        185 EEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             hhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhcChhhhhcCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence            99998899999999999999999999888775411           11   12334567888999999999999999975

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.86  E-value=4.2e-22  Score=166.29  Aligned_cols=178  Identities=17%  Similarity=0.202  Sum_probs=140.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH------------HHhhhc-CCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD------------KVVHVA-HHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ...|..+++||+|+|+.||++....  .....||+|.+.            +.+..+ .+.||+++.+++..+++..+||
T Consensus        35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivl  114 (418)
T KOG1167|consen   35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVL  114 (418)
T ss_pred             hhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEe
Confidence            4468889999999999999999763  267889999887            245555 4899999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCC---CCHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeeccc--------
Q 042690           88 KFMHNRSISSLLYECLR---PTWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMIN--------  150 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~--------  150 (266)
                      ||++.....++.....-   ..+...+..++..+|+.|++|+     |++.+.. +...|+|||+|......        
T Consensus       115 p~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~  194 (418)
T KOG1167|consen  115 PYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRS  194 (418)
T ss_pred             cccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhh
Confidence            99999888888875432   4466778888899999999988     7777643 67799999999721100        


Q ss_pred             ---------------------------------cc--cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhC
Q 042690          151 ---------------------------------QT--QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISC  194 (266)
Q Consensus       151 ---------------------------------~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg  194 (266)
                                                       ..  .......||++|.|||++... .-+++.||||.|+|+..++++
T Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~  274 (418)
T KOG1167|consen  195 YSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSR  274 (418)
T ss_pred             hhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhcc
Confidence                                             00  001125699999999987654 468899999999999999999


Q ss_pred             CCcccC
Q 042690          195 RCVERQ  200 (266)
Q Consensus       195 ~~p~~~  200 (266)
                      +.||..
T Consensus       275 ~~PFf~  280 (418)
T KOG1167|consen  275 RYPFFK  280 (418)
T ss_pred             cccccc
Confidence            998866

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1.5e-18  Score=148.31  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=106.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceee-eeeEEEeCCeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVC-LLGYHIEQECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~-~~~~~~~~~~~   83 (266)
                      ..|.+.+.||+|+||+||+|.++..+++.+|+|+..                   ++++.++|+|++. +++.    +..
T Consensus        18 ~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~----~~~   93 (365)
T PRK09188         18 ARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT----GKD   93 (365)
T ss_pred             CCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc----CCc
Confidence            468899999999999999999864467778998621                   3777889999985 4432    457


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc------ceeecCCCEEEEeecCcceeecccccc----
Q 042690           84 LLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC------RILLHDYFTVETSDLGLAKLLMINQTQ----  153 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~------nili~~~~~~~l~Dfg~a~~~~~~~~~----  153 (266)
                      ++||||+++++|... .......+..++..++.++|.++++|+      ||+++.++.++|+|||+|+........    
T Consensus        94 ~LVmE~~~G~~L~~~-~~~~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~  172 (365)
T PRK09188         94 GLVRGWTEGVPLHLA-RPHGDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIA  172 (365)
T ss_pred             EEEEEccCCCCHHHh-CccchHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhh
Confidence            999999999999743 222234566777777788887766654      889999999999999999976432111    


Q ss_pred             ---ccccccCCCCcCCccccCC
Q 042690          154 ---TLTGMRETKGYLPPEWFRN  172 (266)
Q Consensus       154 ---~~~~~~~~~~y~aPE~~~~  172 (266)
                         ......+++.|+|||.+..
T Consensus       173 ~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        173 AYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             hhhhhhhhhccCccCCcccCCh
Confidence               1123567788999998763

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.71  E-value=1.6e-15  Score=129.13  Aligned_cols=217  Identities=16%  Similarity=0.087  Sum_probs=158.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcC----CCceeeeeeEE-EeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAH----HKNLVCLLGYH-IEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~----h~~iv~~~~~~-~~~~~~~l   85 (266)
                      .|.+.++||+|+||.||++.........+|+|.+.              .++..+.    .+++..+++.. ......++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            89999999999999999999753333467776554              3555554    25888888888 46677899


Q ss_pred             EEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC-----CEEEEeecCcce--
Q 042690           86 VYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY-----FTVETSDLGLAK--  145 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~-----~~~~l~Dfg~a~--  145 (266)
                      ||+.+ |.+|.++.....  +++      +..++..++..+|..+++|+     |+.+...     ..+.|.|||+++  
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~  177 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRF  177 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccc
Confidence            99988 679999886433  333      44456666688888888888     7888754     468999999998  


Q ss_pred             eecccccc------c-cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------
Q 042690          146 LLMINQTQ------T-LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------  203 (266)
Q Consensus       146 ~~~~~~~~------~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------  203 (266)
                      ........      . .....||..|+++....+...+.+.|+||++-++.+++.|..||.....               
T Consensus       178 ~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~  257 (322)
T KOG1164|consen  178 KYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLL  257 (322)
T ss_pred             cccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhc
Confidence            43222211      1 1235599999999999998999999999999999999999999966221               


Q ss_pred             -----ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          204 -----PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       204 -----~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                           ......+..+...+-+.+...+|....+...++......
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  258 TDRFGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             cccccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence                 112234555665666678888888888888877765543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=5.1e-18  Score=154.04  Aligned_cols=206  Identities=15%  Similarity=0.168  Sum_probs=151.4

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .....+|.|++|.|+..... .....++.|...                    .+-..+.|||++..+..........-.
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~-~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~  399 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRR-SDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQS  399 (601)
T ss_pred             CccceeeecccCceEEEEec-CCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhh
Confidence            35677899999977766643 122222222211                    133467899998887776655555555


Q ss_pred             EEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc---
Q 042690           87 YKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT---  152 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~---  152 (266)
                      ||||++ +|...+.....      -...+++...++++|.+++.|+     |+++..+|.+|++|||.+..+...-.   
T Consensus       400 mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~  478 (601)
T KOG0590|consen  400 MEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNI  478 (601)
T ss_pred             hhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhh
Confidence            999999 99999987533      2345667777788998888887     89999999999999999987643222   


Q ss_pred             cccccccCCCCcCCccccCCCCCCc-ccchhhHHHHHHHHHhCCCcccCCCCc------------------------ccc
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTV-KVDVYSFGVMLLEIISCRCVERQGSDP------------------------KTL  207 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~-~~Di~slG~i~~~l~tg~~p~~~~~~~------------------------~~~  207 (266)
                      .......|+-.|+|||.+.+..|++ ..||||.|+++..|++|+.||......                        ...
T Consensus       479 ~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  558 (601)
T KOG0590|consen  479 HESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLP  558 (601)
T ss_pred             hhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhch
Confidence            3445678999999999999888876 599999999999999999999652111                        111


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+-..++.++|+.+|.+|.++++|++.
T Consensus       559 ~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  559 RETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             hhHHHHHHHHccCChhheecHHHHhhC
Confidence            233358999999999999999999853

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.68  E-value=1e-16  Score=140.02  Aligned_cols=180  Identities=18%  Similarity=0.251  Sum_probs=134.7

Q ss_pred             hhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhh-cCCCCHHHHHHHHHHHhhhcCcccc------------ce
Q 042690           62 VHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYE-CLRPTWQQRMQDCIRDCWRTRALAC------------RI  128 (266)
Q Consensus        62 l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~h~------------ni  128 (266)
                      |+.+.|.|+.+++|.+.++...+.|.+||..|+|.+.+.. ...+.+.-......+.+.+..++|.            |-
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            4678899999999999999999999999999999999986 3445554444444333333333333            88


Q ss_pred             eecCCCEEEEeecCcceeecc-ccccccccccCCCCcCCccccCCCC-------CCcccchhhHHHHHHHHHhCCCcccC
Q 042690          129 LLHDYFTVETSDLGLAKLLMI-NQTQTLTGMRETKGYLPPEWFRNMP-------VTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       129 li~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~-------~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      +++....+||.|||+...... ..........-...|.|||.+.+..       .+.+.|+||+|++++|+++.+.||..
T Consensus        81 lvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~  160 (484)
T KOG1023|consen   81 LVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDL  160 (484)
T ss_pred             eeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccc
Confidence            999999999999999987632 1111222233466899999887531       46679999999999999999999976


Q ss_pred             CCC--------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          201 GSD--------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       201 ~~~--------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      ...                          .+..+.+..++.+||..+|..||+++.+...++.+...
T Consensus       161 ~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  161 RNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             ccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence            110                          02223577899999999999999999998888877654

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4e-16  Score=145.37  Aligned_cols=216  Identities=13%  Similarity=0.128  Sum_probs=162.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC---CCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH---HKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~---h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      -..|++.+.||+|+||.||+|...  +++.+|||...           +++.+++   -+.|+.+..++.-.+.-++|+|
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~--~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~e  774 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHS--NGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSE  774 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecC--CCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeee
Confidence            347999999999999999999985  59999999887           4666666   3566777777777777889999


Q ss_pred             cCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCcccc-----ceeecC-------CCEEEEeecCcceeecc-
Q 042690           89 FMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALAC-----RILLHD-------YFTVETSDLGLAKLLMI-  149 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~-------~~~~~l~Dfg~a~~~~~-  149 (266)
                      |.+.|+|.+++...+.      ..+..++..++..+|.++|||.     |.+|..       ..-++|+|||-+.-+.- 
T Consensus       775 y~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lf  854 (974)
T KOG1166|consen  775 YSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLF  854 (974)
T ss_pred             ccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEc
Confidence            9999999999985443      2344566667788887777776     666642       23579999999976542 


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcc--cCC--CCccccchH------HHHHHHhhh
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVE--RQG--SDPKTLEKP------VMIAIQFVK  219 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~--~~~--~~~~~~~~~------~~l~~~cl~  219 (266)
                      .+........+|-.+-++|+..|.+|++++|.|+|+.+++.|+.|+..-  .+.  .......++      -++...+|.
T Consensus       855 p~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q~~~g~~~~~~~~~~Ry~~~~~W~~~F~~lLN  934 (974)
T KOG1166|consen  855 PDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYMEVKNGSSWMVKTNFPRYWKRDMWNKFFDLLLN  934 (974)
T ss_pred             CCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCcceeccccchhhhhHHHHHHHHHHHhC
Confidence            2333556677899999999999999999999999999999999998622  110  011112222      247777788


Q ss_pred             cCCCCCCCHHHHHHHHHHHHh
Q 042690          220 EKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .|-+.=|.+.++...++++..
T Consensus       935 ~~~~~~p~l~~lr~~~~~~~~  955 (974)
T KOG1166|consen  935 PDCDTLPNLQELRTELEEVLA  955 (974)
T ss_pred             cCcccchhHHHHHHHHHHHHH
Confidence            666666888999988888754

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.68  E-value=4.6e-15  Score=124.97  Aligned_cols=205  Identities=20%  Similarity=0.226  Sum_probs=154.0

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCC-ceeeeeeEEEeCCeEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHK-NLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~-~iv~~~~~~~~~~~~~lv~   87 (266)
                      |.+.+.||.|+|+.||++.+.    ..+++|.+.                 ..++.+.|+ +++++++.+......++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~----~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   77 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR----KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVM   77 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec----cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEE
Confidence            667889999999999999974    555665554                 256777877 7999999997777789999


Q ss_pred             EcCCCCCHHHHHhhcC---CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeeccccc
Q 042690           88 KFMHNRSISSLLYECL---RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQT  152 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~---~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~  152 (266)
                      +++.++++.+++....   ..      .+..++...+..+|..+++|+     |++++..+ .++++|||++........
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~  157 (384)
T COG0515          78 EYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGS  157 (384)
T ss_pred             ecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCc
Confidence            9999999998887543   32      233444444456776666666     89999988 799999999986543222


Q ss_pred             c-----ccccccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------c
Q 042690          153 Q-----TLTGMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------P  204 (266)
Q Consensus       153 ~-----~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~  204 (266)
                      .     ......++..|++||.+.+   ...+...|+||+|++++++++|..|+.....                    .
T Consensus       158 ~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (384)
T COG0515         158 TSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLAS  237 (384)
T ss_pred             cccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCccccc
Confidence            2     2356778999999998887   5788899999999999999999988654321                    0


Q ss_pred             ccc--------chHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 KTL--------EKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ~~~--------~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ...        ....+++..++..+|..|.+..+....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         238 PLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             ccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            011        246678888888888888887665543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.66  E-value=7.4e-16  Score=120.85  Aligned_cols=177  Identities=18%  Similarity=0.189  Sum_probs=134.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCC-CceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHH-KNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h-~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      -.++|.++++||+|+||.+|.|... ..+..||||.+.            ++.+.+++ ..|..+..+..+...-++||+
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i-~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISI-TSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeec-cCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            4578999999999999999999986 688999999887            36666665 677777888777888899999


Q ss_pred             cCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeecccccc
Q 042690           89 FMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      .. |.+|++...-..+       +....++..-+.++|.++++|+     |.|-.-   ...+.|+|||+|+......+.
T Consensus        92 LL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~  170 (341)
T KOG1163|consen   92 LL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTR  170 (341)
T ss_pred             cc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcccccc
Confidence            88 6699998863322       3344555555566776666666     555442   357899999999987544333


Q ss_pred             cc------ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          154 TL------TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       154 ~~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      .+      ..-.||..|.+--...+...+..-|+=|+|-++.++-.|..||++
T Consensus       171 ~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQg  223 (341)
T KOG1163|consen  171 QHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQG  223 (341)
T ss_pred             ccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccc
Confidence            22      224678888887766666677889999999999999999999988

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.65  E-value=3.7e-16  Score=124.91  Aligned_cols=151  Identities=9%  Similarity=0.058  Sum_probs=109.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------------HhhhcCCCceeeeeeEEEeC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------------VVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------------~l~~~~h~~iv~~~~~~~~~   80 (266)
                      .+|.+.+.+|+|+||.||.+..   ++..+++|.+..                       .+.++.|++|..+.+++...
T Consensus        31 ~~y~~~~~l~~~~f~~v~l~~~---~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         31 YNIKTIKVFRNIDDTKVSLIDT---DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             CceEEEEEecCCCceEEEEEec---CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            4799999999999999999654   456789988741                       46677899999999886543


Q ss_pred             --------CeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 --------ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 --------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                              +..+++|||++|.+|.++....  .....++..++..+|..+++|+     |++++.+| ++|+|||.....
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~--~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~  184 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPEIS--EDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCT  184 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhhcc--HHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccc
Confidence                    3578999999999998885321  2234566667788887777776     99999999 999999988654


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS  193 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t  193 (266)
                      .......             .......++.++|+||||+++..+..
T Consensus       185 ~e~~a~d-------------~~vler~y~~~~di~~lg~~~~~~~~  217 (232)
T PRK10359        185 AQRKAKD-------------RIDLERHYGIKNEIKDLGYYLLIYKK  217 (232)
T ss_pred             cchhhHH-------------HHHHHhHhcccccccceeEeehHHHH
Confidence            2111110             02222345568999999998776543

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.60  E-value=2.6e-16  Score=138.10  Aligned_cols=190  Identities=17%  Similarity=0.124  Sum_probs=140.1

Q ss_pred             cCCCcceEEEEEEEc--CCCcceeeeeeHH----------------HHhhhcC-CCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           32 PCGGSFSTVYTGVLA--PGDKTNIGVKKLD----------------KVVHVAH-HKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        32 ig~G~~g~V~~~~~~--~~~~~~vaiK~~~----------------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +|+|+||.|+.+.-.  ...+.-++.|.+.                .++...+ ||.++++.-.+..++..++++++..+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            577888888866521  1234444554443                3666666 99999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcc-----ccceeecCCCEEEEeecCcceeeccccccccccccCC
Q 042690           93 RSISSLLYECLRPTWQ------QRMQDCIRDCWRTRAL-----ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET  161 (266)
Q Consensus        93 ~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~-----h~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~  161 (266)
                      |.|...+.......+.      ..+..+++..|..+++     ..||+++.+|.+++.|||+++.....     +..+||
T Consensus        82 g~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~-----~~~cgt  156 (612)
T KOG0603|consen   82 GDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKE-----KIACGT  156 (612)
T ss_pred             chhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhh-----hhcccc
Confidence            9998888766654333      2233333444444444     44999999999999999999875422     122789


Q ss_pred             CCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------CCCccccchHHHHHHHhhhcCCCCCCCH
Q 042690          162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------GSDPKTLEKPVMIAIQFVKEKPPLRPSL  228 (266)
Q Consensus       162 ~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------~~~~~~~~~~~~l~~~cl~~~p~~Rps~  228 (266)
                      ..|||||...  ....++|-||+|+++++|+||..||..           ..+.+......+++.+++..+|.+|--.
T Consensus       157 ~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~~~~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  157 YEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGGDTMKRILKAELEMPRELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             hhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCchHHHHHHhhhccCCchhhhHHHHHHHHHHHhhCHHHHhcc
Confidence            9999999987  346789999999999999999999976           2244455566678888899999988643

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.60  E-value=9.4e-15  Score=119.55  Aligned_cols=174  Identities=16%  Similarity=0.160  Sum_probs=133.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH------------HhhhcC-CCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------VVHVAH-HKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +|.+.++||+|+||..|.|... -++++||||.+..            ..+.+. .++|..+|-+-.+.-+-.||||.. 
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl-~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-  106 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNL-YNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-  106 (449)
T ss_pred             cceeccccccCcceeeeccccc-ccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-
Confidence            6999999999999999999964 5789999997762            444554 588888877666666667999988 


Q ss_pred             CCCHHHHHhhcCC-CCHHH------HHHHHHHHhhhc-----CccccceeecCC-----CEEEEeecCcceeeccccccc
Q 042690           92 NRSISSLLYECLR-PTWQQ------RMQDCIRDCWRT-----RALACRILLHDY-----FTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        92 ~~~L~~~l~~~~~-~~~~~------~l~~~~~~~~~~-----~~~h~nili~~~-----~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |-||+++..-.++ ++...      ++...+..+|.+     ++.+.|.||...     ..+.++|||+|+....+.+..
T Consensus       107 GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~Tkq  186 (449)
T KOG1165|consen  107 GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQ  186 (449)
T ss_pred             CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccc
Confidence            6699998875443 44333      333333455544     444668999754     357899999999886655554


Q ss_pred             c------ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          155 L------TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       155 ~------~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      +      +...||-+||+--.-.|..-+..-|.=|||=++.+++.|..||.+
T Consensus       187 HIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQG  238 (449)
T KOG1165|consen  187 HIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQG  238 (449)
T ss_pred             cCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccc
Confidence            3      335789999998888888888999999999999999999999988

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.59  E-value=2e-15  Score=124.24  Aligned_cols=196  Identities=15%  Similarity=0.112  Sum_probs=120.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhh--hc----------CCCceeeeeeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVH--VA----------HHKNLVCLLGY   76 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~--~~----------~h~~iv~~~~~   76 (266)
                      ..+...+.||.|+++.||.+.+. .+++++++|...               +.+.  .+          .|-.++..++.
T Consensus        12 r~l~~~~~i~~g~~~~v~~v~d~-~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~   90 (288)
T PF14531_consen   12 RTLVRGRIIGKGGFSIVFEVTDV-ETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDL   90 (288)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEET-TTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEE
T ss_pred             eEEEEccccccCCceEEEEEEEc-cCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEE
Confidence            36778899999999999999975 788999998764               0111  11          12234444444


Q ss_pred             EEeC------------C-----eEEEEEEcCCCCCHHHHHhh---cCC----------CCHHHHHHHHHHHhhhcCcccc
Q 042690           77 HIEQ------------E-----CRLLVYKFMHNRSISSLLYE---CLR----------PTWQQRMQDCIRDCWRTRALAC  126 (266)
Q Consensus        77 ~~~~------------~-----~~~lv~e~~~~~~L~~~l~~---~~~----------~~~~~~l~~~~~~~~~~~~~h~  126 (266)
                      ..-.            +     ..+++|+-+.+ +|.+++..   ...          +....++..+...+|+.+++|.
T Consensus        91 ~~i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~-dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHg  169 (288)
T PF14531_consen   91 LRIPGKPPFFERGPGQSIYWVLNRFLLMPRAQG-DLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHG  169 (288)
T ss_dssp             EEETTS-SEEEECETTEEEEEESEEEEEE--SE-EHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEES
T ss_pred             EEEcCCCcceecCCCCccceeehhhhccchhhh-cHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEec
Confidence            3321            1     23678888854 99887652   111          2233444555577777777776


Q ss_pred             -----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCC--------CCCCcccchhhHHHHHHHHHh
Q 042690          127 -----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN--------MPVTVKVDVYSFGVMLLEIIS  193 (266)
Q Consensus       127 -----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~Di~slG~i~~~l~t  193 (266)
                           |++++.+|.+.|+||+.........  .  ....+..|.+||....        ..++.+.|.|+||+++|.+++
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~~--~--~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC  245 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTRY--R--CSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWC  245 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEEE--E--GGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHH
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCcee--e--ccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHH
Confidence                 8999999999999998876643211  1  1234578999996532        247889999999999999999


Q ss_pred             CCCcccCCCC-----------ccccchHHHHHHHhhhcCCCCC
Q 042690          194 CRCVERQGSD-----------PKTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       194 g~~p~~~~~~-----------~~~~~~~~~l~~~cl~~~p~~R  225 (266)
                      +..||....+           ...++.+..+|..+|+.||.+|
T Consensus       246 ~~lPf~~~~~~~~~~~~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  246 GRLPFGLSSPEADPEWDFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             SS-STCCCGGGSTSGGGGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             ccCCCCCCCccccccccchhcCCcCHHHHHHHHHHccCCcccC
Confidence            9999865211           1344566678888888888876

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=4.2e-16  Score=134.33  Aligned_cols=150  Identities=18%  Similarity=0.235  Sum_probs=109.6

Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC---------CCHHHHHHHHH--HHhhhcCccccceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR---------PTWQQRMQDCI--RDCWRTRALACRILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~---------~~~~~~l~~~~--~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      .+++.|++|...+|.+|+.....         +.|..++.-++  +...|.+..+.||+...+..+++.|||+.......
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~  409 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKD  409 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccccccchhhhhhhhhheeecccC
Confidence            47899999999999999974322         23333333333  44556666667999999999999999999876543


Q ss_pred             c-----ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------CCCcccc---chHH
Q 042690          151 Q-----TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------GSDPKTL---EKPV  211 (266)
Q Consensus       151 ~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------~~~~~~~---~~~~  211 (266)
                      .     ...++...||..||+||++.+..|+.++||||||++++||++ -...+..          ..++...   +.-.
T Consensus       410 ~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r~g~ip~~~~~d~p~e~  489 (516)
T KOG1033|consen  410 ETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIATLTDIRDGIIPPEFLQDYPEEY  489 (516)
T ss_pred             CcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhhcCCCChHHhhcCcHHH
Confidence            3     234556789999999999999999999999999999999998 3322211          1121211   2334


Q ss_pred             HHHHHhhhcCCCCCCCHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIV  231 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~i  231 (266)
                      .++.+++...|.+||++.+.
T Consensus       490 ~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  490 TLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             HHHHHhcCCCcccCchHHHH
Confidence            69999999999999955443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=7.6e-16  Score=142.29  Aligned_cols=211  Identities=16%  Similarity=0.183  Sum_probs=149.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .++...+-||++.|=+|.+++++  .| .|++|++.+                 ..+.+++||.+++.-+..++...|+|
T Consensus        23 ~e~~~~~~LGstRFlKv~r~k~~--eG-~vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   23 VECHYVENLGSTRFLKVARAKDR--EG-LVVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             cceeeecccCchhhhhhhhccCC--Cc-eEEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHH
Confidence            38888999999999999999974  44 378877652                 34456799999988777777778899


Q ss_pred             EEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcCccc-----cceeecCCCEEEEeecCcceeeccccc--c
Q 042690           87 YKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTRALA-----CRILLHDYFTVETSDLGLAKLLMINQT--Q  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~~~h-----~nili~~~~~~~l~Dfg~a~~~~~~~~--~  153 (266)
                      -+|... +|++.+..+.-      .-+.-++.-+++.||..++-|     .||||+.=+.+.|.||..-+..--+++  .
T Consensus       100 Rqyvkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPa  178 (1431)
T KOG1240|consen  100 RQYVKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPA  178 (1431)
T ss_pred             HHHHhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcc
Confidence            899876 88887753221      123345556666666555555     499999999999999987764321111  1


Q ss_pred             ccc----cccCCCCcCCccccCC----------CC-CCcccchhhHHHHHHHHHh-CCCcccC--------C--CCc---
Q 042690          154 TLT----GMRETKGYLPPEWFRN----------MP-VTVKVDVYSFGVMLLEIIS-CRCVERQ--------G--SDP---  204 (266)
Q Consensus       154 ~~~----~~~~~~~y~aPE~~~~----------~~-~~~~~Di~slG~i~~~l~t-g~~p~~~--------~--~~~---  204 (266)
                      ...    ....-.+|.|||.+-.          .+ .+++.||||+||++.||++ |+++|.-        +  ..+   
T Consensus       179 df~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~  258 (1431)
T KOG1240|consen  179 DFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQL  258 (1431)
T ss_pred             cceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHH
Confidence            111    1233458999997642          12 6789999999999999998 4666643        1  111   


Q ss_pred             ---cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          205 ---KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       205 ---~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                         .....+..++..|++.||++|-++++.|+...+.
T Consensus       259 Le~Ied~~~Rnlil~Mi~rdPs~RlSAedyL~~yrG~  295 (1431)
T KOG1240|consen  259 LEKIEDVSLRNLILSMIQRDPSKRLSAEDYLQKYRGL  295 (1431)
T ss_pred             HHhCcCccHHHHHHHHHccCchhccCHHHHHHhhhcc
Confidence               1223556799999999999999999998874444

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.55  E-value=2.1e-14  Score=120.19  Aligned_cols=168  Identities=18%  Similarity=0.205  Sum_probs=118.0

Q ss_pred             cCCCceeeeeeEEEeC---------------------------CeEEEEEEcCCCCCHHHHHhhcCCC-----CHHHHHH
Q 042690           65 AHHKNLVCLLGYHIEQ---------------------------ECRLLVYKFMHNRSISSLLYECLRP-----TWQQRMQ  112 (266)
Q Consensus        65 ~~h~~iv~~~~~~~~~---------------------------~~~~lv~e~~~~~~L~~~l~~~~~~-----~~~~~l~  112 (266)
                      -+|||||+++++|.+.                           ..+|+||..+.. +|.+++-....-     -+..++.
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~~s~r~~~~~laQlL  351 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRHRSYRTGRVILAQLL  351 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCCCchHHHHHHHHHHH
Confidence            4699999999886431                           257999999976 999999644332     2345666


Q ss_pred             HHHHHhhhcCcccc-----ceeec--CCC--EEEEeecCcceeecc-----ccccccccccCCCCcCCccccCCCC----
Q 042690          113 DCIRDCWRTRALAC-----RILLH--DYF--TVETSDLGLAKLLMI-----NQTQTLTGMRETKGYLPPEWFRNMP----  174 (266)
Q Consensus       113 ~~~~~~~~~~~~h~-----nili~--~~~--~~~l~Dfg~a~~~~~-----~~~~~~~~~~~~~~y~aPE~~~~~~----  174 (266)
                      .++.++|.|++.|+     |||+.  +|+  .++++|||-+-....     +...-....-|+-..||||.....+    
T Consensus       352 Eav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~a  431 (598)
T KOG4158|consen  352 EAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNA  431 (598)
T ss_pred             HHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCce
Confidence            67788888888877     88884  443  568999987654321     0011111234677899999875432    


Q ss_pred             -C-CcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          175 -V-TVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       175 -~-~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                       . -.++|.|+.|.+.||+++...||..                 ..+....+...+++...|+.||++|++.+-...
T Consensus       432 vvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~iAAN  509 (598)
T KOG4158|consen  432 VVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLLKRDPSKRVSPNIAAN  509 (598)
T ss_pred             eeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHhcCCccccCCccHHHh
Confidence             1 2479999999999999999999976                 112334456678999999999999999654333

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.51  E-value=9.4e-14  Score=109.13  Aligned_cols=165  Identities=9%  Similarity=0.013  Sum_probs=114.5

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceee------------------eeeHHHHhhhcC-CCceeeeeeEEEeCCeEEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIG------------------VKKLDKVVHVAH-HKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~va------------------iK~~~~~l~~~~-h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .....|+.|+||+||.+..   .+..++                  ++++.++++.+. |+++.+++++    +..+++|
T Consensus         5 ~~~~~l~~~~f~~v~~~~~---~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvm   77 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG---GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDR   77 (218)
T ss_pred             ccceeecCCCcceEEEeec---CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEE
Confidence            3567899999999997663   444443                  234446888896 4889999886    3468999


Q ss_pred             EcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc------ceeecCCCEEEEeecCcceeeccccc-----c---
Q 042690           88 KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC------RILLHDYFTVETSDLGLAKLLMINQT-----Q---  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~------nili~~~~~~~l~Dfg~a~~~~~~~~-----~---  153 (266)
                      ||+.|.+|.+.+.. ....+..++..++..+|..+++|+      ||+++.++.++|+|||++........     .   
T Consensus        78 eyI~G~~L~~~~~~-~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rD  156 (218)
T PRK12274         78 SYLAGAAMYQRPPR-GDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLARED  156 (218)
T ss_pred             eeecCccHHhhhhh-hhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHH
Confidence            99999999876532 224455566666677776666554      89999999999999999985432111     0   


Q ss_pred             -----ccccccCCCCcCCccccCCC-CCC-cccchhhHHHHHHHHHhCCCcccC
Q 042690          154 -----TLTGMRETKGYLPPEWFRNM-PVT-VKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       154 -----~~~~~~~~~~y~aPE~~~~~-~~~-~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                           .. -...++.|++|+...-. ..+ ...+-++.|+-+|.++|+..+.-.
T Consensus       157 l~~llk~-~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~  209 (218)
T PRK12274        157 LRHLLKH-KRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE  209 (218)
T ss_pred             HHHHHHH-HHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence                 01 12357778888743211 223 456667999999999999876654

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.49  E-value=8.5e-13  Score=105.56  Aligned_cols=113  Identities=13%  Similarity=0.163  Sum_probs=88.0

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +.||+|++|.||+|.+   .+..+++|...                      ..+..+.|+++.....++......+++|
T Consensus         2 ~~l~~G~~~~vy~~~~---~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF---LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee---CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEE
Confidence            5799999999999987   45567777421                      2666778888888777777777889999


Q ss_pred             EcCCCCCHHHHHhhcCC--CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           88 KFMHNRSISSLLYECLR--PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      ||++|++|.+++.....  ..+..++..++..+|..+++|.     ||+++ ++.++++|||.+..
T Consensus        79 e~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSNGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            99999999999865332  3455566666777787777766     89998 78899999999864

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.49  E-value=1.5e-13  Score=108.14  Aligned_cols=114  Identities=12%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------------------------HHhhhcCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------------------------KVVHVAHHK   68 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------------------------~~l~~~~h~   68 (266)
                      ...||+|++|.||+|...  +++.||+|++.                                        +.+..+.++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~--~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   79 (190)
T cd05147           2 NGCISTGKEANVYHATTA--NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTA   79 (190)
T ss_pred             CCccccccceEEEEEECC--CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            468999999999999974  78899999763                                        234445555


Q ss_pred             ceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHh-hhcCcccc-----ceeecCCCEE
Q 042690           69 NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTW------QQRMQDCIRDC-WRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        69 ~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~-~~~~~~h~-----nili~~~~~~  136 (266)
                      ++.....+..  ...++||||+.++++.........++.      ..++..++..+ |..+++|+     ||+++ ++.+
T Consensus        80 ~v~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v  156 (190)
T cd05147          80 GIPCPEPILL--KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKL  156 (190)
T ss_pred             CCCCCcEEEe--cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcE
Confidence            5533333222  223799999998877655433334333      34444555666 45577776     99998 4789


Q ss_pred             EEeecCcceee
Q 042690          137 ETSDLGLAKLL  147 (266)
Q Consensus       137 ~l~Dfg~a~~~  147 (266)
                      +|+|||+|...
T Consensus       157 ~LiDFG~a~~~  167 (190)
T cd05147         157 YIIDVSQSVEH  167 (190)
T ss_pred             EEEEccccccC
Confidence            99999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.48  E-value=1.7e-13  Score=107.93  Aligned_cols=115  Identities=15%  Similarity=0.130  Sum_probs=81.9

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------------------------HHhhhcCC
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------------------------KVVHVAHH   67 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------------------------~~l~~~~h   67 (266)
                      +.+.||+|++|.||+|...  +++.||+|++.                                        +.+..+.|
T Consensus         1 ~~~~ig~G~~~~Vy~a~~~--~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~   78 (190)
T cd05145           1 INGCISTGKEANVYHARTG--DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYE   78 (190)
T ss_pred             CCceeecCCCcEEEEEEcC--CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3578999999999999974  78899999744                                        23445567


Q ss_pred             CceeeeeeEEEeCCeEEEEEEcCCCCCHHHH-HhhcCC------CCHHHHHHHHHHHhhh-cCcccc-----ceeecCCC
Q 042690           68 KNLVCLLGYHIEQECRLLVYKFMHNRSISSL-LYECLR------PTWQQRMQDCIRDCWR-TRALAC-----RILLHDYF  134 (266)
Q Consensus        68 ~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~-l~~~~~------~~~~~~l~~~~~~~~~-~~~~h~-----nili~~~~  134 (266)
                      +++.....+....  .++||||+.++++... +.. ..      ..+..++..++..+|+ .+++|+     ||+++ ++
T Consensus        79 ~~i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l~~-~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~  154 (190)
T cd05145          79 AGVPVPEPILLKK--NVLVMEFIGDDGSPAPRLKD-VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DG  154 (190)
T ss_pred             CCCCCceEEEecC--CEEEEEEecCCCchhhhhhh-ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CC
Confidence            7664444443332  4799999998755443 332 22      3344566666677777 777776     99998 88


Q ss_pred             EEEEeecCcceeec
Q 042690          135 TVETSDLGLAKLLM  148 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~  148 (266)
                      .++|+|||++....
T Consensus       155 ~~~liDFG~a~~~~  168 (190)
T cd05145         155 KPYIIDVSQAVELD  168 (190)
T ss_pred             CEEEEEcccceecC
Confidence            99999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.48  E-value=6.7e-14  Score=129.29  Aligned_cols=182  Identities=16%  Similarity=0.201  Sum_probs=124.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--HhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhh
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYE  101 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~  101 (266)
                      ++|..++.|..|+||.||.++++ .+.+.+|+|.=++  +++     ||+.+-+      ..+.|      |+=...++.
T Consensus        83 ~df~~IklisngAygavylvrh~-~trqrfa~kiNkq~lilR-----nilt~a~------npfvv------gDc~tllk~  144 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHK-ETRQRFAMKINKQNLILR-----NILTFAG------NPFVV------GDCATLLKN  144 (1205)
T ss_pred             cccceeEeeccCCCCceeeeecc-ccccchhhcccccchhhh-----ccccccC------Cccee------chhhhhccc
Confidence            46888999999999999999986 6788888843332  222     2333221      11111      233333433


Q ss_pred             cCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc--------------cccccccCCC
Q 042690          102 CLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT--------------QTLTGMRETK  162 (266)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~--------------~~~~~~~~~~  162 (266)
                      .+.+..  .+..++.++|+-++.|+     |.+|+.-|..|+.|||+.+...-...              ...+..+||+
T Consensus       145 ~g~lPv--dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTP  222 (1205)
T KOG0606|consen  145 IGPLPV--DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTP  222 (1205)
T ss_pred             CCCCcc--hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCc
Confidence            333222  23556678888787777     89999999999999999876321100              0112357999


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCccc------------------cchHHHHHHHhhhcCCCC
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKT------------------LEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~~------------------~~~~~~l~~~cl~~~p~~  224 (266)
                      .|.|||++.-..|....|.|++|+|+|+.+-|+.||.++.+.+.                  ..+..+++.+.|..+|..
T Consensus       223 eyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp~~  302 (1205)
T KOG0606|consen  223 EYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNPLC  302 (1205)
T ss_pred             cccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhChHh
Confidence            99999999888899999999999999999999999988654433                  344445666666666666


Q ss_pred             C
Q 042690          225 R  225 (266)
Q Consensus       225 R  225 (266)
                      |
T Consensus       303 R  303 (1205)
T KOG0606|consen  303 R  303 (1205)
T ss_pred             h
Confidence            5

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.42  E-value=4.2e-12  Score=100.62  Aligned_cols=111  Identities=12%  Similarity=0.205  Sum_probs=85.6

Q ss_pred             ccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           31 KPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .||+|++|.||+|.+   .+..+++|...                      ++++.+.|+++.....++......+++||
T Consensus         1 ~ig~G~~~~vy~~~~---~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF---LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec---CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEE
Confidence            379999999999996   45667777521                      25566777776655555566667789999


Q ss_pred             cCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           89 FMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      |++|++|.+++..... .+..++..++..+|..+++|.     |++++ ++.++++|||.+..
T Consensus        78 ~~~g~~l~~~~~~~~~-~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        78 YIEGKPLKDVIEEGND-ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EECCccHHHHHhhcHH-HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999999998865332 566777777788888777776     89998 88999999999865

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10345 hypothetical protein; Provisional

Probab=99.37  E-value=5.8e-12  Score=100.27  Aligned_cols=114  Identities=14%  Similarity=0.086  Sum_probs=80.5

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhc-----CCCceeeeeeEEEeCC---e-E
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVA-----HHKNLVCLLGYHIEQE---C-R   83 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~-----~h~~iv~~~~~~~~~~---~-~   83 (266)
                      .-.+.||+|+++.||.  + +.+... +||+..              ..++.+     .||||++++++++++.   . +
T Consensus         5 ~~~~~LG~G~~~~Vy~--h-p~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--H-PEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             CCcceecCCCceEEEE--C-CCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            3456899999999995  3 234333 577543              356666     6899999999998863   3 3


Q ss_pred             EEEEEc--CCCCCHHHHHhhcCCCCH-----HHHHHHHHHHhhhcCcccc-----ceeecCC----CEEEEeecCcce
Q 042690           84 LLVYKF--MHNRSISSLLYECLRPTW-----QQRMQDCIRDCWRTRALAC-----RILLHDY----FTVETSDLGLAK  145 (266)
Q Consensus        84 ~lv~e~--~~~~~L~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~h~-----nili~~~----~~~~l~Dfg~a~  145 (266)
                      .+||||  +.+++|.+++.+. .++.     .+.+..+..++|.++++|+     ||+++..    +.++|+||+.+.
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~-~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQC-RYEEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             EEEecCCCCcchhHHHHHHcc-cccHhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            478999  5579999999763 3332     2333344478888888887     9999743    479999954443

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.37  E-value=1.2e-11  Score=112.40  Aligned_cols=116  Identities=12%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeee--------------------eHHHHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVK--------------------KLDKVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK--------------------~~~~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ...+.||+|+||+||++.+. +....+..+                    .+.++++.++|++++.+..++......++|
T Consensus       336 ~~~~~iG~G~~g~Vy~~~~~-~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv  414 (535)
T PRK09605        336 IPDHLIGKGAEADIKKGEYL-GRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIV  414 (535)
T ss_pred             CccceeccCCcEEEEEEeec-CccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEE
Confidence            45789999999999999873 221111111                    111367788999998888777777778899


Q ss_pred             EEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           87 YKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      |||+++++|.+++..  ...+..++..++..+|..+++|+     ||++ .++.++|+|||+++.
T Consensus       415 ~E~~~g~~L~~~l~~--~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        415 MEYIGGKDLKDVLEG--NPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             EEecCCCcHHHHHHH--HHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            999999999999863  24566677777788887777777     8999 678899999999975

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.30  E-value=9.5e-12  Score=98.64  Aligned_cols=118  Identities=10%  Similarity=0.002  Sum_probs=83.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------------------------HHhhhcCCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------------------------KVVHVAHHK   68 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------------------------~~l~~~~h~   68 (266)
                      .|.+.+.||+|++|.||++.+.  ++..+++|+..                                    ..+..+.|+
T Consensus        16 ~~~~~~~i~~G~~g~Vy~~~~~--~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~   93 (198)
T cd05144          16 VESLGNQIGVGKESDVYLALDP--DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE   93 (198)
T ss_pred             hhhcCCccccCcceEEEEEEcC--CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHc
Confidence            3777899999999999999874  78899999521                                    134445555


Q ss_pred             c--eeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           69 N--LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        69 ~--iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      +  +..+++    ....+++|||+++++|.+.........+..++..++..+|..+++|+     |+++++++.++|+||
T Consensus        94 ~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDf  169 (198)
T cd05144          94 GFPVPKPID----WNRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDW  169 (198)
T ss_pred             CCCCCceee----cCCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEEC
Confidence            3  333333    24468999999999988765422223344555555566666666665     999999999999999


Q ss_pred             Ccceeec
Q 042690          142 GLAKLLM  148 (266)
Q Consensus       142 g~a~~~~  148 (266)
                      |.+....
T Consensus       170 g~~~~~~  176 (198)
T cd05144         170 PQMVSTD  176 (198)
T ss_pred             CccccCC
Confidence            9996543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=7.6e-13  Score=120.54  Aligned_cols=210  Identities=17%  Similarity=0.157  Sum_probs=153.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC-CCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH-HKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~-h~~iv~~~~~~~~~~~~~l   85 (266)
                      ...|.+.+.||+|+++.|-...........++.|.+.                .+-+.+. |+|++.+++.....+..++
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            4578888899999999998777533344444444333                2333444 9999999999999999999


Q ss_pred             EEEcCCCCCHHHHH-hhcC-C------CCHHHHHHHHHHHhh------hcCccccceeecCCC-EEEEeecCcceeecc-
Q 042690           86 VYKFMHNRSISSLL-YECL-R------PTWQQRMQDCIRDCW------RTRALACRILLHDYF-TVETSDLGLAKLLMI-  149 (266)
Q Consensus        86 v~e~~~~~~L~~~l-~~~~-~------~~~~~~l~~~~~~~~------~~~~~h~nili~~~~-~~~l~Dfg~a~~~~~-  149 (266)
                      .++|..++++..-+ .... .      -.+..++...+.+.|      |.++.+.|.+++..+ ..+..|||+|..... 
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~  178 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNK  178 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhcccccc
Confidence            99999999999988 4332 1      223344444445555      444445589999999 999999999988754 


Q ss_pred             -ccccccccccC-CCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC--------------------Cccc
Q 042690          150 -NQTQTLTGMRE-TKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------DPKT  206 (266)
Q Consensus       150 -~~~~~~~~~~~-~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------~~~~  206 (266)
                       ..........| ++.|+|||...+. -..+..|+||.|+++..+++|..|+....                    ....
T Consensus       179 ~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (601)
T KOG0590|consen  179 NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSI  258 (601)
T ss_pred             CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccC
Confidence             22223445677 9999999988773 34677999999999999999999886611                    1123


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      .....+++.+++..+|..|.+.+++-
T Consensus       259 ~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  259 SDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             ChhhhhcccccccCCchhcccccccc
Confidence            35566788899999999999988764

>smart00090 RIO RIO-like kinase

Probab=99.21  E-value=5.2e-11  Score=96.86  Aligned_cols=120  Identities=14%  Similarity=0.043  Sum_probs=82.0

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------------------------HhhhcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------------------------VVHVAH   66 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------------------------~l~~~~   66 (266)
                      -|.+.+.||+|++|.||+|.++..++..||+|....                                      .++.+.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999983335788999996541                                      222333


Q ss_pred             CCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHHHHHhhhcC-cccc-----ceeecCCC
Q 042690           67 HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLR------PTWQQRMQDCIRDCWRTR-ALAC-----RILLHDYF  134 (266)
Q Consensus        67 h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~~~~~~~~~-~~h~-----nili~~~~  134 (266)
                      +. .+.+..++.. ...++||||+.+.+|.........      ..+..++..++..+|.++ ++|+     ||+++ ++
T Consensus       109 ~~-~i~~p~~~~~-~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~  185 (237)
T smart00090      109 EA-GVPVPKPIAW-RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DG  185 (237)
T ss_pred             hc-CCCCCeeeEe-cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CC
Confidence            21 2222222222 235799999999888766532222      235566667777788777 7776     89999 88


Q ss_pred             EEEEeecCcceee
Q 042690          135 TVETSDLGLAKLL  147 (266)
Q Consensus       135 ~~~l~Dfg~a~~~  147 (266)
                      .++|+|||.+...
T Consensus       186 ~i~LiDFg~a~~~  198 (237)
T smart00090      186 KVVIIDVSQSVEL  198 (237)
T ss_pred             CEEEEEChhhhcc
Confidence            9999999998754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.16  E-value=2.7e-10  Score=101.58  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=121.6

Q ss_pred             ccCCCcceEEEEEEEcCCCcceeeeeeHHHHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCHH--
Q 042690           31 KPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQ--  108 (266)
Q Consensus        31 ~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~--  108 (266)
                      ..-.|++..||...+.++ +..-.+|+-.+.++.++||||+++++.++..+..|+|+|.+.  .|..++++.+.....  
T Consensus        33 ~k~~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~~~~v~~G  109 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELGKEEVCLG  109 (690)
T ss_pred             eeccCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhHHHHHHHH
Confidence            344588888888887533 222235556678899999999999999999999999999984  788888765532222  


Q ss_pred             -HHHHHHHHHhh-hcCccccc-----eeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccch
Q 042690          109 -QRMQDCIRDCW-RTRALACR-----ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDV  181 (266)
Q Consensus       109 -~~l~~~~~~~~-~~~~~h~n-----ili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  181 (266)
                       .++..++..++ ..+..|.|     ++|+..|.+||++|........... .......-..|..|+.+....  -..|.
T Consensus       110 l~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~-~~~~~~~~~s~~~P~~~~~s~--~s~D~  186 (690)
T KOG1243|consen  110 LFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA-PAKSLYLIESFDDPEEIDPSE--WSIDS  186 (690)
T ss_pred             HHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc-ccccchhhhcccChhhcCccc--cchhh
Confidence             23334445554 34566776     7899999999999988765432111 112222233566666554332  34699


Q ss_pred             hhHHHHHHHHHhCCCcccC--CCCccccchHHHHHHHhhhcCCCCCCC
Q 042690          182 YSFGVMLLEIISCRCVERQ--GSDPKTLEKPVMIAIQFVKEKPPLRPS  227 (266)
Q Consensus       182 ~slG~i~~~l~tg~~p~~~--~~~~~~~~~~~~l~~~cl~~~p~~Rps  227 (266)
                      |.|||++++++.|..+-..  ..........+.+..+-+-..+..||.
T Consensus       187 ~~Lg~li~el~ng~~~~~~~~~~~~~ipk~~~~~~~k~~~~~~~~r~n  234 (690)
T KOG1243|consen  187 WGLGCLIEELFNGSLLTKTDLSNTGKIPKALIELYCKKLGATELKRPN  234 (690)
T ss_pred             hhHHHHHHHHhCcccCcchhhhccCccchhHHHHHHHHhccccccccc
Confidence            9999999999999332211  111222234444444445555555555

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.06  E-value=2.1e-10  Score=89.95  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=73.6

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------HhhhcCCCc------------------------
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHHKN------------------------   69 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------~l~~~~h~~------------------------   69 (266)
                      .+.||+|++|.||+|...  +++.|++|....               .+....|++                        
T Consensus         2 ~~~lg~G~~g~Vy~a~~~--~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~   79 (187)
T cd05119           2 GGPIGTGKEADVYLALDG--DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGV   79 (187)
T ss_pred             CcccccccceeEEEEECC--CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCC
Confidence            468999999999999874  688999996541               011111111                        


Q ss_pred             -eeeeeeEEEeCCeEEEEEEcCCCC-----CHHHHHhhcCCCCHHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEE
Q 042690           70 -LVCLLGYHIEQECRLLVYKFMHNR-----SISSLLYECLRPTWQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVE  137 (266)
Q Consensus        70 -iv~~~~~~~~~~~~~lv~e~~~~~-----~L~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~  137 (266)
                       +.+++++    ...++||||++++     .|.+............++..++..+|. .+++|.     |++++ ++.++
T Consensus        80 ~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~  154 (187)
T cd05119          80 PVPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVY  154 (187)
T ss_pred             CCCceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEE
Confidence             2222221    2458999999984     444433222223455556666677776 666665     89999 89999


Q ss_pred             EeecCcceeec
Q 042690          138 TSDLGLAKLLM  148 (266)
Q Consensus       138 l~Dfg~a~~~~  148 (266)
                      |+|||.+....
T Consensus       155 liDfg~a~~~~  165 (187)
T cd05119         155 IIDVPQAVEID  165 (187)
T ss_pred             EEECccccccc
Confidence            99999997643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=2.7e-10  Score=93.67  Aligned_cols=172  Identities=15%  Similarity=0.203  Sum_probs=114.9

Q ss_pred             HhhhcCCCceeeeeeEEEeC-----CeEEEEEEcCCCCCHHHHHhhcCC----------CCHHHHHHHHHHHhhhcC--c
Q 042690           61 VVHVAHHKNLVCLLGYHIEQ-----ECRLLVYKFMHNRSISSLLYECLR----------PTWQQRMQDCIRDCWRTR--A  123 (266)
Q Consensus        61 ~l~~~~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~~----------~~~~~~l~~~~~~~~~~~--~  123 (266)
                      -+-++-|.|||++..+|.+.     ....+++||+..|++.+++++..+          ..|..++..++.++|+.+  +
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppi  199 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPI  199 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCcc
Confidence            44456799999999998653     357899999999999999986433          246667777777777664  5


Q ss_pred             cccc-----eeecCCCEEEEeecCcceeec---cccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCC
Q 042690          124 LACR-----ILLHDYFTVETSDLGLAKLLM---INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR  195 (266)
Q Consensus       124 ~h~n-----ili~~~~~~~l~Dfg~a~~~~---~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~  195 (266)
                      +|.|     +++..+|.+|+.--.......   ...........+-+.|.+||.-.....+.++|||+||.-..+|.-++
T Consensus       200 ihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailE  279 (458)
T KOG1266|consen  200 IHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILE  279 (458)
T ss_pred             ccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHhe
Confidence            5665     788878877765221111100   00111112234567899999766556678899999999999998877


Q ss_pred             C-cccCCCCcc---cc---------chHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          196 C-VERQGSDPK---TL---------EKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       196 ~-p~~~~~~~~---~~---------~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      . +-.......   ..         ..-..++..|++..|..||++++++
T Consensus       280 iq~tnseS~~~~ee~ia~~i~~len~lqr~~i~kcl~~eP~~rp~ar~ll  329 (458)
T KOG1266|consen  280 IQSTNSESKVEVEENIANVIIGLENGLQRGSITKCLEGEPNGRPDARLLL  329 (458)
T ss_pred             eccCCCcceeehhhhhhhheeeccCccccCcCcccccCCCCCCcchhhhh
Confidence            5 333211111   00         1112488999999999999999875

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=1.1e-09  Score=96.64  Aligned_cols=205  Identities=17%  Similarity=0.161  Sum_probs=144.6

Q ss_pred             eeeeeccCC--CcceEEEEEEE--cCCCcceeeeeeHHH----------------Hhhhc-CCCceeeeeeEEEeCCeEE
Q 042690           26 IYSLKKPCG--GSFSTVYTGVL--APGDKTNIGVKKLDK----------------VVHVA-HHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        26 ~~~~~~ig~--G~~g~V~~~~~--~~~~~~~vaiK~~~~----------------~l~~~-~h~~iv~~~~~~~~~~~~~   84 (266)
                      +.+.+.+|.  |.+|.||.+..  . .+...+++|+-..                ..++. .|+|.++.+..++..+..+
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~-~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNS-ESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             cccccccccCCCCCceeecccCCcc-cCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            456678899  99999999986  3 5667777776331                12222 3889999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCC-----------CHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceee
Q 042690           85 LVYKFMHNRSISSLLYECLRP-----------TWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLL  147 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~-----------~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~  147 (266)
                      +-+|+|. .+|.++.......           .+.....-++..+|..+++|.     ||+...+ ..+++.|||+....
T Consensus       195 iqtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i  273 (524)
T KOG0601|consen  195 IQTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKI  273 (524)
T ss_pred             eeecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEc
Confidence            9999996 5888888754331           111111125566666666665     8999888 88999999999877


Q ss_pred             cccccccc----ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC--CCccc--------------c
Q 042690          148 MINQTQTL----TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG--SDPKT--------------L  207 (266)
Q Consensus       148 ~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~--~~~~~--------------~  207 (266)
                      ........    ....+...|++||...+ .++...|+|++|.++.+..++...+..+  ....+              .
T Consensus       274 ~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s  352 (524)
T KOG0601|consen  274 SDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGS  352 (524)
T ss_pred             cCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcc
Confidence            54332211    12367788999998876 4678899999999999999988766553  11111              1


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ..+...+.++++.+|..|+++..+..
T Consensus       353 ~~l~~~~~~~~d~~~~~~~~~q~~~~  378 (524)
T KOG0601|consen  353 SSLRSVTSQMLDEDPRLRLTAQILTA  378 (524)
T ss_pred             hhhhhHHHHhcCcchhhhhHHHHHhc
Confidence            22333778899999999999876643

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.95  E-value=6e-09  Score=84.94  Aligned_cols=113  Identities=12%  Similarity=0.032  Sum_probs=78.8

Q ss_pred             ccC-CCcceEEEEEEEcCCCcceeeeeeH---------------------------HHHhhhcCCCce--eeeeeEEEeC
Q 042690           31 KPC-GGSFSTVYTGVLAPGDKTNIGVKKL---------------------------DKVVHVAHHKNL--VCLLGYHIEQ   80 (266)
Q Consensus        31 ~ig-~G~~g~V~~~~~~~~~~~~vaiK~~---------------------------~~~l~~~~h~~i--v~~~~~~~~~   80 (266)
                      .|| .|+.|+||.+..   .+..+++|+.                           ..++..+.|+++  ++++++....
T Consensus        38 ~lg~~~g~gtv~~v~~---~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         38 VVGSAKGRGTTWFVQT---PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             eeecCCCCccEEEEEe---CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            566 577788887765   3445565533                           136667777774  6666664332


Q ss_pred             C----eEEEEEEcCCC-CCHHHHHhhcC-CCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           81 E----CRLLVYKFMHN-RSISSLLYECL-RPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        81 ~----~~~lv~e~~~~-~~L~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      .    ..++|||++++ .+|.+++.... ......++..++..+|..+++|+     |||++.++.++|+|||.+..
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            2    23599999997 69998886532 12234556677788888888877     99999999999999999875

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.90  E-value=3.4e-09  Score=93.73  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------Hh-----------------------------------
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------VV-----------------------------------   62 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------~l-----------------------------------   62 (266)
                      .++||+|+.|.||+|+.+  +|+.||||+.+.           ++                                   
T Consensus       122 ~~plasaSigQVh~A~l~--~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eld  199 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLV--DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELD  199 (437)
T ss_pred             CcceeeeehhheEEEEec--CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHC
Confidence            478999999999999985  778999998641           00                                   


Q ss_pred             ------------hhcCCCceeeeeeEE-EeCCeEEEEEEcCCCCCHHHHHhhcC-CC---CHHHHH-HHHHHHhhhcCcc
Q 042690           63 ------------HVAHHKNLVCLLGYH-IEQECRLLVYKFMHNRSISSLLYECL-RP---TWQQRM-QDCIRDCWRTRAL  124 (266)
Q Consensus        63 ------------~~~~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~-~~---~~~~~l-~~~~~~~~~~~~~  124 (266)
                                  +.++|.+-+.+-.++ ...+..++||||++|++|.++..... ..   .....+ ...+..++..+++
T Consensus       200 f~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~  279 (437)
T TIGR01982       200 LRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFF  279 (437)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCce
Confidence                        012222222322222 22345689999999999988765321 11   122222 2234555665655


Q ss_pred             cc-----ceeecCCCEEEEeecCcceeec
Q 042690          125 AC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus       125 h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      |.     ||+++.++.++++|||++....
T Consensus       280 H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       280 HADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             eCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            55     9999999999999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.87  E-value=4.3e-09  Score=78.87  Aligned_cols=116  Identities=13%  Similarity=0.098  Sum_probs=80.2

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCC--CceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHH--KNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h--~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      +.+.||+|.++.||++...   +..+++|...            ..++.++|  .++.+++++....+..+++|||+.++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~---~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK---DEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             cceecccccccceEEEEec---CCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            4578999999999999973   3567776553            35556655  58888888887778899999999987


Q ss_pred             CHHHHHhhcCCCCHHHHHHHHHHHhh--------hcCccccceeecCCCEEEEeecCcceee
Q 042690           94 SISSLLYECLRPTWQQRMQDCIRDCW--------RTRALACRILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        94 ~L~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~h~nili~~~~~~~l~Dfg~a~~~  147 (266)
                      .+..+ ...........+..++..+|        |.++.+.|++++..+.+++.|||.+...
T Consensus        79 ~~~~~-~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          79 TLDEV-SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             ecccC-CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            77643 11111222333333333333        4445555999999899999999998753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=3.6e-09  Score=93.33  Aligned_cols=210  Identities=16%  Similarity=0.141  Sum_probs=143.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------Hhh-hcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVH-VAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~-~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .++..+..||.|.|+.|+....++.++..|++|.+.+                +.. ...|.+++.++..|....+.++-
T Consensus       265 ~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip  344 (524)
T KOG0601|consen  265 TDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIP  344 (524)
T ss_pred             CCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCc
Confidence            4566778999999999999886667888889888773                222 23488888988888877778899


Q ss_pred             EEcCCCCCHHHHHhhcC------CCCHHHHHHHHHHHhhhc-----CccccceeecCC-CEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECL------RPTWQQRMQDCIRDCWRT-----RALACRILLHDY-FTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~------~~~~~~~l~~~~~~~~~~-----~~~h~nili~~~-~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      .|||+++++...+.-..      .+....+...++..+|..     ++...||++..+ +..++.||+....+.-   ..
T Consensus       345 ~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~---~~  421 (524)
T KOG0601|consen  345 LEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAF---SS  421 (524)
T ss_pred             hhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccccce---ec
Confidence            99999988776553222      233334444444444433     344459999886 7789999998864221   11


Q ss_pred             cccccCCCCc-CCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------CCCccccchHHHHHHHhhhcC
Q 042690          155 LTGMRETKGY-LPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------GSDPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       155 ~~~~~~~~~y-~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------~~~~~~~~~~~~l~~~cl~~~  221 (266)
                      ......+..| .+++.....++..++|++|||..+.+.+++......            ...+.....+..+...+...+
T Consensus       422 ~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~~i~~~~~p~~~~~~~~~q~~~kv~~~~~  501 (524)
T KOG0601|consen  422 GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSLTIRSGDTPNLPGLKLQLQVLLKVMINPD  501 (524)
T ss_pred             ccccccccccccchhhccccccccccccccccccccccccCcccCcccccceeeecccccCCCchHHhhhhhhhhhcCCc
Confidence            1111223344 356666777888999999999999999999873322            112223356667888888899


Q ss_pred             CCCCCCHHHHHHHHH
Q 042690          222 PPLRPSLRIVALMLQ  236 (266)
Q Consensus       222 p~~Rps~~~il~~l~  236 (266)
                      +..||.+.++....+
T Consensus       502 ~~~~~l~~~l~~~~~  516 (524)
T KOG0601|consen  502 RKRRPSAVELSLHSE  516 (524)
T ss_pred             cccchhhhhhcccch
Confidence            999999887765443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.86  E-value=1.4e-08  Score=91.26  Aligned_cols=124  Identities=13%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------------------------------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------------------------------   60 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------------------------------   60 (266)
                      |.+|.. ++||+|++|.||+|+.+ .+|+.||||+...                                          
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~-~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~  196 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLK-DNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKT  196 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEEC-CCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHH
Confidence            445554 79999999999999986 3488999997751                                          


Q ss_pred             ----------------HhhhcCCCceeeeeeEEEe-CCeEEEEEEcCCCCCHHHHHh--hcCC--CCHH-HHHHHHHHHh
Q 042690           61 ----------------VVHVAHHKNLVCLLGYHIE-QECRLLVYKFMHNRSISSLLY--ECLR--PTWQ-QRMQDCIRDC  118 (266)
Q Consensus        61 ----------------~l~~~~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~--~~~~--~~~~-~~l~~~~~~~  118 (266)
                                      ..+.+.+.+.+.+-.++.+ .+..++||||++|+++.++..  ..+.  .... ..+......+
T Consensus       197 l~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi  276 (537)
T PRK04750        197 LHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV  276 (537)
T ss_pred             HHHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                            0011122222333222221 344679999999999987532  2221  0111 1222233333


Q ss_pred             hhcCccc-----cceeecCCC----EEEEeecCcceeec
Q 042690          119 WRTRALA-----CRILLHDYF----TVETSDLGLAKLLM  148 (266)
Q Consensus       119 ~~~~~~h-----~nili~~~~----~~~l~Dfg~a~~~~  148 (266)
                      ...++.|     .||+++.+|    .++++|||+.....
T Consensus       277 f~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        277 FRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             HhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            3444444     399999988    99999999998764

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.55  E-value=3.9e-07  Score=69.99  Aligned_cols=110  Identities=14%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCce-eeeeeEEEeCCeEEEEEEcCCCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNL-VCLLGYHIEQECRLLVYKFMHNRS   94 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~i-v~~~~~~~~~~~~~lv~e~~~~~~   94 (266)
                      .+++++|..+.||++..   .+..+++|...             ..++.+.+.++ .+++.+.  ....++||||+++.+
T Consensus         3 ~~~l~~G~~~~vy~~~~---~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~   77 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV---ANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSE   77 (170)
T ss_pred             eeecCCcccCceEEEEE---CCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCc
Confidence            46788999999999885   35567777642             24555544333 3445443  334579999999988


Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHhhhcC----------ccccceeecCCCEEEEeecCccee
Q 042690           95 ISSLLYECLRPTWQQRMQDCIRDCWRTR----------ALACRILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        95 L~~~l~~~~~~~~~~~l~~~~~~~~~~~----------~~h~nili~~~~~~~l~Dfg~a~~  146 (266)
                      +.+.  .........++..++..+|..+          +...|++++ ++.++++||+.+..
T Consensus        78 l~~~--~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          78 LLTE--DFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             cccc--cccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            7653  1112233445555555555443          333489998 67899999999865

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.50  E-value=9.4e-07  Score=67.76  Aligned_cols=112  Identities=15%  Similarity=0.224  Sum_probs=77.4

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+++|+=+.++.+.+.   +..+.+|.=.                      .++.+++--.|....=+..+.....++|
T Consensus         2 ~~i~~GAEa~i~~~~~~---g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~m   78 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL---GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVM   78 (204)
T ss_pred             chhhCCcceeEEeeecc---CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEE
Confidence            35677888888888763   2233333211                      2455554434433333344556667999


Q ss_pred             EcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           88 KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      ||++|..|.+.+... .......+-..+..+|..+++|.     |+++.+++ +.++|||++..
T Consensus        79 e~I~G~~lkd~l~~~-~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          79 EYIEGELLKDALEEA-RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EEeCChhHHHHHHhc-chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            999999999999765 56777888888889999999887     66666554 89999999975

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.46  E-value=1.1e-05  Score=70.93  Aligned_cols=193  Identities=15%  Similarity=0.183  Sum_probs=128.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEe----CCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIE----QECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~----~~~~~   84 (266)
                      +...+-++..+.-...+.||+... -+|..|.+|++.              +..+++.|+|+|++.+++.+    +..++
T Consensus       275 ~~~L~pl~~~~~~~~~Ttyk~~s~-~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~Slv  353 (655)
T KOG3741|consen  275 FVNLYPLELLNDLFSITTYKATSN-VDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLV  353 (655)
T ss_pred             hhceeecccccccccceeEeeeec-cCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEE
Confidence            334444445544355788999865 689999999992              57889999999999999863    45789


Q ss_pred             EEEEcCCC-CCHHHHHhhcCC---------------------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEE
Q 042690           85 LVYKFMHN-RSISSLLYECLR---------------------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVE  137 (266)
Q Consensus        85 lv~e~~~~-~~L~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~  137 (266)
                      +|++|.++ ++|.++.-....                     ..+.-++..++..+|+.|..-.     +|+++++.+++
T Consensus       354 lvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIr  433 (655)
T KOG3741|consen  354 LVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIR  433 (655)
T ss_pred             EEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEE
Confidence            99999986 566665432111                     1244567777788888775543     79999999999


Q ss_pred             EeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCc-ccCCC---------Ccccc
Q 042690          138 TSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCV-ERQGS---------DPKTL  207 (266)
Q Consensus       138 l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p-~~~~~---------~~~~~  207 (266)
                      +...|+-.....+++..               +.+   -.+-|.-.||.++..|.||..- +..+.         ...++
T Consensus       434 iS~C~i~Dvl~~d~~~~---------------le~---~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I~~~yS  495 (655)
T KOG3741|consen  434 ISGCGIMDVLQEDPTEP---------------LES---QQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLTRITTTYS  495 (655)
T ss_pred             EecccceeeecCCCCcc---------------hhH---HhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHhhhhhh
Confidence            99888877654333111               111   1346888999999999999642 22222         22334


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALML  235 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l  235 (266)
                      .++.+++.-....++.+ -++.+++.++
T Consensus       496 ~D~rn~v~yl~s~~~~~-ksI~~llp~~  522 (655)
T KOG3741|consen  496 TDLRNVVEYLESLNFRE-KSIQDLLPMI  522 (655)
T ss_pred             HHHHHHHHHHHhcCccc-ccHHHHHHHH
Confidence            44445666666666665 5666665553

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.43  E-value=3.7e-07  Score=85.64  Aligned_cols=208  Identities=15%  Similarity=0.076  Sum_probs=136.1

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--Hhh---------------hcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--VVH---------------VAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--~l~---------------~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .....+.+.+.+-+|+++.++.+.-. +.+...+.|....  .++               ...+|-++...--+......
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa-~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~  879 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPA-GSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPL  879 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCcc-ccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCc
Confidence            35667888888889999999988743 3333333332221  111               12234444443333445668


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCccc-----cceeecCCCEEEEeecCcceeec-c--
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALA-----CRILLHDYFTVETSDLGLAKLLM-I--  149 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h-----~nili~~~~~~~l~Dfg~a~~~~-~--  149 (266)
                      +|+++|..+++|...++......      +...+......++....+|     .|.++..+|...+.||+...... .  
T Consensus       880 ~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p  959 (1205)
T KOG0606|consen  880 PLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPP  959 (1205)
T ss_pred             chhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccC
Confidence            89999999999999988655322      2223333334444443444     48888999999999998433211 0  


Q ss_pred             ---------------------------ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC
Q 042690          150 ---------------------------NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS  202 (266)
Q Consensus       150 ---------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~  202 (266)
                                                 .+........+|+.|.+||...+....+.+|.|++|+.+++.++|.+||....
T Consensus       960 ~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~t 1039 (1205)
T KOG0606|consen  960 TTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAET 1039 (1205)
T ss_pred             cCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcc
Confidence                                       00011123568999999999999888899999999999999999999997733


Q ss_pred             C------------------ccccchHHHHHHHhhhcCCCCCCCHH
Q 042690          203 D------------------PKTLEKPVMIAIQFVKEKPPLRPSLR  229 (266)
Q Consensus       203 ~------------------~~~~~~~~~l~~~cl~~~p~~Rps~~  229 (266)
                      +                  ........+++...+..+|.+|-.+.
T Consensus      1040 pq~~f~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1040 PQQIFENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhhhhhccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            2                  23345556677788888888886543

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.05  E-value=8.1e-05  Score=64.19  Aligned_cols=212  Identities=12%  Similarity=0.117  Sum_probs=123.0

Q ss_pred             eeeeccCCCcceEEEEEEEcCC--------CcceeeeeeHHHHhhhcCCCceeeeeeE-----E-EeCC-eEEEEEEcCC
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPG--------DKTNIGVKKLDKVVHVAHHKNLVCLLGY-----H-IEQE-CRLLVYKFMH   91 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~--------~~~~vaiK~~~~~l~~~~h~~iv~~~~~-----~-~~~~-~~~lv~e~~~   91 (266)
                      ...+.||+|+-+.+|-.--..+        ..-..+-|+..++.+.-.||-+-.-+.+     + -+.+ ..-++|+.+.
T Consensus        14 ~~gr~LgqGgea~ly~l~e~~d~VAKIYh~Pppa~~aqk~a~la~~p~~p~~~~rvaWPqa~L~G~~~~~~iGflmP~v~   93 (637)
T COG4248          14 PPGRPLGQGGEADLYTLGEVRDQVAKIYHAPPPAAQAQKVAELAATPDAPLLNYRVAWPQATLHGGRRGKVIGFLMPKVS   93 (637)
T ss_pred             CCCccccCCccceeeecchhhchhheeecCCCchHHHHHHHHhccCCCCcchhhhhcccHHHhhCCCccceeEEecccCC
Confidence            3456889999888885431100        0111112233334444456654331111     0 1122 2567888877


Q ss_pred             CC-CHHHHHhhc-CC-----CCHH------HHHHHHH----HHhhhcCcccc-ceeecCCCEEEEeecCcceeecccccc
Q 042690           92 NR-SISSLLYEC-LR-----PTWQ------QRMQDCI----RDCWRTRALAC-RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        92 ~~-~L~~~l~~~-~~-----~~~~------~~l~~~~----~~~~~~~~~h~-nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +. ....+.... .+     ..|.      +.+..+.    ..-|+.+++.. |+|+.+++.++|.|-..-...  .++.
T Consensus        94 g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~--~ng~  171 (637)
T COG4248          94 GKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQIN--ANGT  171 (637)
T ss_pred             CccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccceeec--cCCc
Confidence            63 233333211 11     2232      2333333    33444555544 799999999999986443332  3444


Q ss_pred             ccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhC-CCcccC---------------------------
Q 042690          154 TLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISC-RCVERQ---------------------------  200 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg-~~p~~~---------------------------  200 (266)
                      ......|...|.+||.-.     +..-+..+|-|.||+++++++.| +.||.+                           
T Consensus       172 ~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~  251 (637)
T COG4248         172 LHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQR  251 (637)
T ss_pred             eEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhcc
Confidence            555677899999999543     44567789999999999999987 779977                           


Q ss_pred             ---CCCcc------ccchHHHHHHHhhhcC--CCCCCCHHHHHHHHHHHHh
Q 042690          201 ---GSDPK------TLEKPVMIAIQFVKEK--PPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       201 ---~~~~~------~~~~~~~l~~~cl~~~--p~~Rps~~~il~~l~~~~~  240 (266)
                         ..++.      ....+..+..+|++..  +.-||+++..+..|.....
T Consensus       252 ~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~  302 (637)
T COG4248         252 RGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQ  302 (637)
T ss_pred             CCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHH
Confidence               00111      1234456777887763  6689999888777766643

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.98  E-value=6.9e-05  Score=58.93  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=65.0

Q ss_pred             eccCCCcceEEEEEEEcCC-----CcceeeeeeHHH----------------------------------------Hhhh
Q 042690           30 KKPCGGSFSTVYTGVLAPG-----DKTNIGVKKLDK----------------------------------------VVHV   64 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~-----~~~~vaiK~~~~----------------------------------------~l~~   64 (266)
                      ..||.|.=+.||.|...++     .+..+|+|..+-                                        .|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4678888888888874311     246778876651                                        2222


Q ss_pred             cCC--CceeeeeeEEEeCCeEEEEEEcCCCCCHHH-HHhhcC-----CCCHHHHHHHHHHHh-hhcCcccc-----ceee
Q 042690           65 AHH--KNLVCLLGYHIEQECRLLVYKFMHNRSISS-LLYECL-----RPTWQQRMQDCIRDC-WRTRALAC-----RILL  130 (266)
Q Consensus        65 ~~h--~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~-~l~~~~-----~~~~~~~l~~~~~~~-~~~~~~h~-----nili  130 (266)
                      +..  -++.+++++    ...++||||+.++.+.. .+++..     ......++...+..+ |..+++|.     ||++
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~  158 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLW  158 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEE
Confidence            221  233444443    44679999997643321 222110     011223333333434 56677776     8999


Q ss_pred             cCCCEEEEeecCcceeec
Q 042690          131 HDYFTVETSDLGLAKLLM  148 (266)
Q Consensus       131 ~~~~~~~l~Dfg~a~~~~  148 (266)
                      + ++.+.++|||.+....
T Consensus       159 ~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         159 H-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             E-CCcEEEEECCCceeCC
Confidence            7 4679999999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.97  E-value=5.5e-05  Score=58.18  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=75.4

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+..+-+|+=+.|+++.+   .++...||.=.                      +.+.++.--.|.-..=++.+...-.|
T Consensus        11 ~l~likQGAEArv~~~~~---~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i   87 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF---SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQI   87 (229)
T ss_pred             cceeeeccceeeEeeecc---CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeE
Confidence            566788899999999997   56665565322                      13333322222222222334444558


Q ss_pred             EEEcCCC-CCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecCcceee
Q 042690           86 VYKFMHN-RSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLGLAKLL  147 (266)
Q Consensus        86 v~e~~~~-~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg~a~~~  147 (266)
                      .|||.++ .++.+++.....        ....+.+-..+..+|..+++|.     ||++..++   .+.++|||++...
T Consensus        88 ~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen   88 YMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             EEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            9999987 577777764321        2455666666788888888886     89987665   3589999998764

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.95  E-value=2.1e-05  Score=64.04  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=72.6

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------------------------HHhhhcCCC--
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------------------------KVVHVAHHK--   68 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------------------------~~l~~~~h~--   68 (266)
                      .+..+||.|.=+.||.|..  ..+.++++|.=+                                    +.|..+...  
T Consensus        94 ~iG~~IGvGKEsdVY~~~~--~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          94 AIGTKIGVGKESDVYVAID--PKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             hhccccccCccceEEEEEC--CCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            3557899999999999997  367777776332                                    244455433  


Q ss_pred             ceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcC-CCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           69 NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        69 ~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                      .+.+.+++    +...+|||+++|..|...--... .......+..-...+...+++|.     ||+++++|.+.++||=
T Consensus       172 ~VP~P~~~----nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vIDwP  247 (304)
T COG0478         172 KVPKPIAW----NRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWP  247 (304)
T ss_pred             CCCCcccc----ccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEeCc
Confidence            55555554    56779999999866655431111 11122222222244446666666     9999999999999995


Q ss_pred             cce
Q 042690          143 LAK  145 (266)
Q Consensus       143 ~a~  145 (266)
                      -+.
T Consensus       248 Q~v  250 (304)
T COG0478         248 QAV  250 (304)
T ss_pred             ccc
Confidence            443

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.91  E-value=3.7e-05  Score=69.10  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=77.7

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------------------------------------
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------------------------------------   60 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------------------------------------   60 (266)
                      .++|+.++-|.||+|+.+  +|+.||||+.+.                                                
T Consensus       130 ~~PiAsASIaQVH~A~L~--sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElD  207 (517)
T COG0661         130 PEPIASASIAQVHRAVLK--SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELD  207 (517)
T ss_pred             CCchhhhhHhhheeEEec--CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhC
Confidence            378999999999999996  699999998770                                                


Q ss_pred             ----------HhhhcC-CCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHH--hhcCCCC---HHH-HHHHHHHHhhhcCc
Q 042690           61 ----------VVHVAH-HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLL--YECLRPT---WQQ-RMQDCIRDCWRTRA  123 (266)
Q Consensus        61 ----------~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l--~~~~~~~---~~~-~l~~~~~~~~~~~~  123 (266)
                                .-+.++ .+++.-..=+++-.+.-+|+|||++|..+.+..  +. ...+   ..+ ........+...++
T Consensus       208 y~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f~~q~~~dgf  286 (517)
T COG0661         208 YRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAFLRQLLRDGF  286 (517)
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcCc
Confidence                      111223 344322222333345678999999998888874  33 2222   111 22233344444554


Q ss_pred             ccc-----ceeecCCCEEEEeecCcceeec
Q 042690          124 LAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus       124 ~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      .|.     |+++..+|...+.|||+.....
T Consensus       287 fHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         287 FHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             cccCCCccceEEecCCcEEEEcCcceecCC
Confidence            444     9999999999999999987654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.88  E-value=4.6e-06  Score=75.40  Aligned_cols=113  Identities=13%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             hhcCccccceeecCCCEEEEeecCcceeeccc-------ccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHH
Q 042690          119 WRTRALACRILLHDYFTVETSDLGLAKLLMIN-------QTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLE  190 (266)
Q Consensus       119 ~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~-------~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~  190 (266)
                      .|.++.+.+|++++++.+|++.|+++.....+       .+. ..........|.|||.+.+...+.++|+||+|+++|.
T Consensus       122 VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~  201 (700)
T KOG2137|consen  122 VHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYT  201 (700)
T ss_pred             eecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccccccccccceeeeeEEEE
Confidence            34455556799999999999999887654321       011 1111334668999999888778899999999999999


Q ss_pred             HH-hCCCcccC-------------------CCCccccchHHHHHHHhhhcCCCCCCCHHHH
Q 042690          191 II-SCRCVERQ-------------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIV  231 (266)
Q Consensus       191 l~-tg~~p~~~-------------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~i  231 (266)
                      +. .|+..+..                   ......+.++.+-+.+.+..++..||++.++
T Consensus       202 i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l  262 (700)
T KOG2137|consen  202 IYNGGKSIIAANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLL  262 (700)
T ss_pred             EecCCcchhhccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCcchhhh
Confidence            88 55554433                   2234456788889999999999999966544

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.63  E-value=0.00021  Score=55.89  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             HhhhcCCC--ceeeeeeEEEeCCeEEEEEEcCC--CCCHHHHHhhcC-C---CCHHHHHHH-HHHHhhhcCcccc-----
Q 042690           61 VVHVAHHK--NLVCLLGYHIEQECRLLVYKFMH--NRSISSLLYECL-R---PTWQQRMQD-CIRDCWRTRALAC-----  126 (266)
Q Consensus        61 ~l~~~~h~--~iv~~~~~~~~~~~~~lv~e~~~--~~~L~~~l~~~~-~---~~~~~~l~~-~~~~~~~~~~~h~-----  126 (266)
                      .|..+..-  ++.+++++.    ..++||||+.  |..+..+..... .   ......+.. ....+|..+++|.     
T Consensus        61 ~L~~l~~~Gv~vP~p~~~~----~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~  136 (188)
T PF01163_consen   61 NLKRLYEAGVPVPKPYDYN----RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEY  136 (188)
T ss_dssp             HHHHCCCTT-SS--EEEEE----TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STT
T ss_pred             HHHHHHHCCccCCcEEEEe----CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChh
Confidence            56666644  455665542    3459999998  655555443220 1   112222222 3344556666665     


Q ss_pred             ceeecCCCEEEEeecCcceeec
Q 042690          127 RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus       127 nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ||+++++ .+.++|||.+....
T Consensus       137 NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  137 NILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             SEEEETT-CEEE--GTTEEETT
T ss_pred             hEEeecc-eEEEEecCcceecC
Confidence            8999888 89999999987643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.57  E-value=0.00013  Score=55.80  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCce-eeeeeEEEeCCeEEEEEEcCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNL-VCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~i-v~~~~~~~~~~~~~lv~e~~~   91 (266)
                      .....+.|++|..|.||++.|+   +.++++|.=.            +++..+..-++ .++|.+.    ...+.|||.+
T Consensus        23 ~~~v~~~L~KG~~s~Vyl~~~~---~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg----~~~i~me~i~   95 (201)
T COG2112          23 ELRVEKELAKGTTSVVYLGEWR---GGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYG----EDFIRMEYID   95 (201)
T ss_pred             hhhhhhhhhcccccEEEEeecc---CceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEec----hhhhhhhhhc
Confidence            4556788999999999999984   4467776543            45666654433 3444442    2346699999


Q ss_pred             CCCHHHHHhhcCCCCHHHHHHHH--H-HHhhhcCcccc--ceeecCCCEEEEeecCccee
Q 042690           92 NRSISSLLYECLRPTWQQRMQDC--I-RDCWRTRALAC--RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~~~~~l~~~--~-~~~~~~~~~h~--nili~~~~~~~l~Dfg~a~~  146 (266)
                      |.+|.++-....+......+-.+  + ...+.|+-+++  .+++-+++.+.++||..|+.
T Consensus        96 G~~L~~~~~~~~rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112          96 GRPLGKLEIGGDRKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             CcchhhhhhcccHHHHHHHHHHHHHHHHhccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            98888877532221111111111  1 22223333333  34455555899999999974

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.50  E-value=0.00037  Score=62.69  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------------------------------------
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------------------------------------   59 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------------------------------------   59 (266)
                      .++||..+.+.|++|+.+  +|+.||+|+=+                                                 
T Consensus       166 ~~piaaASlaQVhrA~L~--~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~  243 (538)
T KOG1235|consen  166 EEPIAAASLAQVHRARLK--NGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTK  243 (538)
T ss_pred             cchhhhcchhheEEEEec--CCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHH
Confidence            579999999999999997  58889998654                                                 


Q ss_pred             ------HHhhhcCCCc------eeeeeeEEEeCCeEEEEEEcCCCCCHHHH--HhhcCCCCHHHH----HHHHHHHhhhc
Q 042690           60 ------KVVHVAHHKN------LVCLLGYHIEQECRLLVYKFMHNRSISSL--LYECLRPTWQQR----MQDCIRDCWRT  121 (266)
Q Consensus        60 ------~~l~~~~h~~------iv~~~~~~~~~~~~~lv~e~~~~~~L~~~--l~~~~~~~~~~~----l~~~~~~~~~~  121 (266)
                            +..+.+.|-+      |.++|--  -...-+|+||||+|..+.+.  |.+.+ .+....    .......+...
T Consensus       244 EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~--~st~RVLtME~~~G~~i~Dl~~i~~~g-i~~~~i~~~l~~~~~~qIf~~  320 (538)
T KOG1235|consen  244 EAKNAERFRENFKDFSLLTYVLVPKVYWD--LSTKRVLTMEYVDGIKINDLDAIDKRG-ISPHDILNKLVEAYLEQIFKT  320 (538)
T ss_pred             HHHhHHHHHHHHHhcccccceeCCeehhh--cCcceEEEEEecCCccCCCHHHHHHcC-CCHHHHHHHHHHHHHHHHHhc
Confidence                  0333444544      3333332  23457899999999766654  33322 222222    22222445555


Q ss_pred             Ccccc-----ceeecC----CCEEEEeecCcceeec
Q 042690          122 RALAC-----RILLHD----YFTVETSDLGLAKLLM  148 (266)
Q Consensus       122 ~~~h~-----nili~~----~~~~~l~Dfg~a~~~~  148 (266)
                      |.+|.     ||++..    ++.+.+.|||+.....
T Consensus       321 GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  321 GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             CCccCCCCCCcEEEecCCCCCccEEEEccccccccc
Confidence            55554     999994    6789999999987654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.41  E-value=2.8e-05  Score=70.11  Aligned_cols=165  Identities=10%  Similarity=0.006  Sum_probs=102.6

Q ss_pred             eccCCCcceEEEEEEEcCCCccee---------eeeeHHHHhhhcCCCc-eeeeeeEEEeCCeEEEEEEcCCCC-CHHHH
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNI---------GVKKLDKVVHVAHHKN-LVCLLGYHIEQECRLLVYKFMHNR-SISSL   98 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~v---------aiK~~~~~l~~~~h~~-iv~~~~~~~~~~~~~lv~e~~~~~-~L~~~   98 (266)
                      ...++|++++++|.+.-  .....         .+....+++.+++||| .+..++-+..+...+++++++.++ +-..-
T Consensus       248 h~fvK~altknpKkRpt--aeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~  325 (829)
T KOG0576|consen  248 HNFVKGALTKNPKKRPT--AEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALE  325 (829)
T ss_pred             HHHHHHHhcCCCccCCC--hhhheeceeeccchhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCcccccc
Confidence            35678889999988742  11111         2223336899999999 666666666667789999999775 11111


Q ss_pred             Hhh-cCC---CCHHHHHHHHH---HHhhhcCccccceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccC
Q 042690           99 LYE-CLR---PTWQQRMQDCI---RDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR  171 (266)
Q Consensus        99 l~~-~~~---~~~~~~l~~~~---~~~~~~~~~h~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~  171 (266)
                      +.. ...   ..+...+....   ...+.-.-.|+..++..++..++.||+.+..+...  .......+++.++|||...
T Consensus       326 ~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~~~~~~~~~~v~~~L~~~--~~~~t~~~~~~~~~pev~~  403 (829)
T KOG0576|consen  326 MTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSEEEVKLLDFAVPPQLTRT--MKPRTAIGTPEPLAPEVIQ  403 (829)
T ss_pred             CChhhHhhhhhhhhhhhhhhcccccccccccccCcccccccccccccccccCCcccCcc--cccccCCCCCCCCCchhhc
Confidence            110 000   11111111111   22222222344233445578899999998776432  2344567899999999998


Q ss_pred             CCCCCcccchhhHHHHHHHHHhCCCcc
Q 042690          172 NMPVTVKVDVYSFGVMLLEIISCRCVE  198 (266)
Q Consensus       172 ~~~~~~~~Di~slG~i~~~l~tg~~p~  198 (266)
                      ...+....|.|++|.-..++.-|.+|.
T Consensus       404 ~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  404 ENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             ccccccCCCccCCCcchhhcCCCCCCC
Confidence            889999999999998777777776654

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.41  E-value=0.00056  Score=54.63  Aligned_cols=66  Identities=11%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCC--CceeeeeeEEEeC---CeEEEEEEc
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHH--KNLVCLLGYHIEQ---ECRLLVYKF   89 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h--~~iv~~~~~~~~~---~~~~lv~e~   89 (266)
                      +.|+.|..+.||++...  ++..+++|...               +.++.+.+  ..+.+++.+....   +..++||||
T Consensus         4 ~~l~~G~~n~~~~v~~~--~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~   81 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG--GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMER   81 (223)
T ss_pred             eecCCCccceEEEEEec--CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEE
Confidence            57899999999999863  34677787654               24555554  3356666665443   256899999


Q ss_pred             CCCCCHHH
Q 042690           90 MHNRSISS   97 (266)
Q Consensus        90 ~~~~~L~~   97 (266)
                      ++|.++.+
T Consensus        82 i~G~~l~~   89 (223)
T cd05154          82 VDGRVLRD   89 (223)
T ss_pred             eCCEecCC
Confidence            99876654

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.39  E-value=0.00032  Score=62.18  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=87.9

Q ss_pred             eeeeHH--HHhhhcCCCceeeeeeEEEeC-CeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCccccceee
Q 042690           54 GVKKLD--KVVHVAHHKNLVCLLGYHIEQ-ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRILL  130 (266)
Q Consensus        54 aiK~~~--~~l~~~~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~nili  130 (266)
                      +++++-  ..++.+.|+|.-.++++.... ....+|||++.. ||++....+. +.....+        .+++.|.|++.
T Consensus        26 s~~ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~~~-Sled~~~~~~-l~~~s~~--------~~~~~~~~~~~   95 (725)
T KOG1093|consen   26 SIQILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHYTM-SLEDILKTGN-LKDESLL--------AHGVLHLNIIY   95 (725)
T ss_pred             HHHHhhhhHHHHhhcCccceeeEeeecCccceEEEEehhhcc-chHHHHHhcc-cchhhhc--------ccccceehhhh
Confidence            344443  488899999999999987643 347789999955 9999998654 3322222        77778877766


Q ss_pred             cCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc------
Q 042690          131 HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP------  204 (266)
Q Consensus       131 ~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~------  204 (266)
                      ..+        .++..     .              |-     +..+++||||+|.++.++.-|...++.....      
T Consensus        96 ~td--------~~~t~-----~--------------~~-----~~~pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i  143 (725)
T KOG1093|consen   96 ITD--------HFLTK-----Y--------------PS-----PIGPKSDVWSLGFIILELYLGISLEAELTESEYLEIL  143 (725)
T ss_pred             ccc--------ccccc-----C--------------CC-----CCCcchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            555        11110     0              00     1114899999999999999888766551111      


Q ss_pred             ---------------------cccchHHHHHHHhhhcCCCCCCCHH
Q 042690          205 ---------------------KTLEKPVMIAIQFVKEKPPLRPSLR  229 (266)
Q Consensus       205 ---------------------~~~~~~~~l~~~cl~~~p~~Rps~~  229 (266)
                                           +.......+...|+...|..||...
T Consensus       144 ~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  144 LKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             HHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence                                 1113334577789999999888643

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.21  E-value=0.0052  Score=49.06  Aligned_cols=116  Identities=7%  Similarity=0.004  Sum_probs=68.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------------HhhhcCC---CceeeeeeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------------VVHVAHH---KNLVCLLGYHI   78 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------------~l~~~~h---~~iv~~~~~~~   78 (266)
                      +|.+.+.+.......|.+...   ++..+.+|....                       .+..+..   .....++-+.+
T Consensus        32 ~~~~~kv~k~~~r~~ValIei---~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   32 NYKIIKVFKNTKRNYVALIEI---DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             CceEEEeecCCCccEEEEEEE---CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            566666777666777777665   567778876652                       1112222   22233233322


Q ss_pred             e-----CCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           79 E-----QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        79 ~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      .     ....+++|||++|..|.++..-.  ......+...+..+|.+|+.|.     |++++++ .++++||+..+.
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~~~i~--e~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDIEDID--EDLAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccchhcC--HHHHHHHHHHHHHHHHcCCccCCCCcCcEEEECC-cEEEEECccccc
Confidence            1     23467899999998877654311  1122344455566666665554     8888755 488999977654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.18  E-value=0.0039  Score=51.67  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             eEEEEEEcCCCC-CHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecC-------CCEEEEee
Q 042690           82 CRLLVYKFMHNR-SISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHD-------YFTVETSD  140 (266)
Q Consensus        82 ~~~lv~e~~~~~-~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~-------~~~~~l~D  140 (266)
                      ..++|||++++. +|.+++.+..  .      .....++..++..+|..++.|.     |||++.       +..+.|+|
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LID  188 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVID  188 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEE
Confidence            467999999885 8999886421  1      1234456667788888888887     999985       46889999


Q ss_pred             cCccee
Q 042690          141 LGLAKL  146 (266)
Q Consensus       141 fg~a~~  146 (266)
                      |+.+..
T Consensus       189 l~r~~~  194 (268)
T PRK15123        189 LHRAQI  194 (268)
T ss_pred             CCcccc
Confidence            998753

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.12  E-value=0.00031  Score=58.93  Aligned_cols=110  Identities=10%  Similarity=-0.008  Sum_probs=77.0

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------------------------HHhhhcCC--
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------------------------KVVHVAHH--   67 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------------------------~~l~~~~h--   67 (266)
                      +.....||-|.-+.||.+..  ..+++.++|.=+                                    ..|+.+..  
T Consensus        94 ~svGnqIGVGKESDIY~v~d--~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~g  171 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVAD--EEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERG  171 (465)
T ss_pred             hhhccccccccccceEEEec--CCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            44567899999999999997  467777776433                                    02223321  


Q ss_pred             CceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           68 KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        68 ~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      --+.+.+++    +..++|||++.+-.|.+.-+-.........+..++-.+..++++|.     ||++++++.++++||
T Consensus       172 fpVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~i~vIDF  246 (465)
T KOG2268|consen  172 FPVPKPIDH----NRHCVVMELVDGYPLRQVRHVEDPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDKIVVIDF  246 (465)
T ss_pred             CCCCCcccc----cceeeHHHhhcccceeeeeecCChHHHHHHHHHHHHHHHHcCceecccchheeEEecCCCEEEeec
Confidence            122333333    4577999999998888776543444555555556666778888988     899999999999999

>PRK09902 hypothetical protein; Provisional

Probab=96.97  E-value=0.02  Score=45.56  Aligned_cols=109  Identities=13%  Similarity=0.019  Sum_probs=70.4

Q ss_pred             CCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhc---CCCceeeeeeEEE---eC--CeEE
Q 042690           33 CGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVA---HHKNLVCLLGYHI---EQ--ECRL   84 (266)
Q Consensus        33 g~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~---~h~~iv~~~~~~~---~~--~~~~   84 (266)
                      |.||.|-|++...   ++..+-+|+-.                    ..+..+   .-| +.++. ++.   ..  -..+
T Consensus        27 ~rgG~SgV~r~~~---~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvP-VP~pv-f~~~~k~~~~~rA~  101 (216)
T PRK09902         27 RRNGMSGVQCVER---NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVI-VPKIV-FGEAVKIEGEWRAL  101 (216)
T ss_pred             CCCCcceEEEEEe---CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCC-CCccc-eeeeeccCCceEEE
Confidence            4488888888775   23356666554                    122222   323 33433 222   11  2467


Q ss_pred             EEEEcCCC-CCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCE--EEEeecCccee
Q 042690           85 LVYKFMHN-RSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFT--VETSDLGLAKL  146 (266)
Q Consensus        85 lv~e~~~~-~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~--~~l~Dfg~a~~  146 (266)
                      ||+|-+.+ .+|.+++.+...        ......+..++..+|..++-|.     ||+++.+|.  +.++||.-++.
T Consensus       102 LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        102 LVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            99997753 689998865322        2455667777789999999988     899987776  89999977764

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.81  E-value=0.019  Score=45.30  Aligned_cols=112  Identities=17%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             cCceeeeeccCCCcc-eEEEEEEEcCCCcceeeeeeHH--------------------------------------HHhh
Q 042690           23 FSHIYSLKKPCGGSF-STVYTGVLAPGDKTNIGVKKLD--------------------------------------KVVH   63 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~-g~V~~~~~~~~~~~~vaiK~~~--------------------------------------~~l~   63 (266)
                      -.+++.++.||.|.- |.||++..   .++.+|+|...                                      ..++
T Consensus        36 ~~~I~flefLg~g~~~~~V~kv~I---~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLk  112 (207)
T PF13095_consen   36 GDDIEFLEFLGHGSHDGYVFKVEI---DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLK  112 (207)
T ss_pred             CCcEeeeeecCCCCceeEEEEEEE---CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHH
Confidence            378999999999999 99999997   67799999822                                      0444


Q ss_pred             hcCCCce--eeeeeEEEeC------------------CeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCc
Q 042690           64 VAHHKNL--VCLLGYHIEQ------------------ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRA  123 (266)
Q Consensus        64 ~~~h~~i--v~~~~~~~~~------------------~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~  123 (266)
                      ...+.++  ++++|+..-.                  ....||-||+....       .....-..++..-+...|..++
T Consensus       113 e~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-------~~~~~~~~~~~~dl~~~~k~gI  185 (207)
T PF13095_consen  113 EAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-------PLQIRDIPQMLRDLKILHKLGI  185 (207)
T ss_pred             hccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-------ccchhHHHHHHHHHHHHHHCCe
Confidence            5556666  8888886322                  11357778776543       0111122223333344555666


Q ss_pred             cccceeecCCCEEEEeecCcc
Q 042690          124 LACRILLHDYFTVETSDLGLA  144 (266)
Q Consensus       124 ~h~nili~~~~~~~l~Dfg~a  144 (266)
                      +...+=..+.-.-+|+|||.+
T Consensus       186 ~~~Dv~~~ny~~G~lvDfs~~  206 (207)
T PF13095_consen  186 VPRDVKPRNYRGGKLVDFSSS  206 (207)
T ss_pred             eeccCccccccCCEEEecccC
Confidence            665554444445689999864

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.32  E-value=0.011  Score=47.11  Aligned_cols=77  Identities=13%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             eeeeeEEEeC----CeEEEEEEcCCC-CCHHHHHhhc------CCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCC
Q 042690           71 VCLLGYHIEQ----ECRLLVYKFMHN-RSISSLLYEC------LRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYF  134 (266)
Q Consensus        71 v~~~~~~~~~----~~~~lv~e~~~~-~~L~~~l~~~------~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~  134 (266)
                      .+++++.+..    ...++|||++++ .+|.+++...      .......++..++..+|..++.|.     |||++.++
T Consensus        76 P~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~  155 (206)
T PF06293_consen   76 PEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDD  155 (206)
T ss_pred             CcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCC
Confidence            4455555442    245899999987 4799998752      124455667777788888888887     99999887


Q ss_pred             ---EEEEeecCcceee
Q 042690          135 ---TVETSDLGLAKLL  147 (266)
Q Consensus       135 ---~~~l~Dfg~a~~~  147 (266)
                         .+.|+||+.++..
T Consensus       156 ~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  156 GQYRFYLIDLDRMRFR  171 (206)
T ss_pred             CceeEEEEcchhceeC
Confidence               8999999987753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=96.28  E-value=0.031  Score=45.44  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------------------------HhhhcC--CCc
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------------------------VVHVAH--HKN   69 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------------------------~l~~~~--h~~   69 (266)
                      ..|+.|.=.+||+|..  +++..+|+|+.+-                                      -|+.+.  +=.
T Consensus        54 g~istGKEA~Vy~a~~--~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVr  131 (268)
T COG1718          54 GCISTGKEANVYLAET--GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVR  131 (268)
T ss_pred             eeecCCcceEEEeecc--CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3667788889999986  5788999998761                                      111111  112


Q ss_pred             eeeeeeEEEeCCeEEEEEEcCCCC-CHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEE
Q 042690           70 LVCLLGYHIEQECRLLVYKFMHNR-SISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVE  137 (266)
Q Consensus        70 iv~~~~~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~  137 (266)
                      +.+.+++    ..-.|||||+... .-.-.+++...-.      +...+..........+.+|.     |||++ ++.+.
T Consensus       132 vP~Pi~~----~~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~p~  206 (268)
T COG1718         132 VPEPIAF----RNNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGEPY  206 (268)
T ss_pred             CCCceee----cCCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCeEE
Confidence            2233332    1346999998542 1111122111100      22223333344444666666     99999 88999


Q ss_pred             EeecCcceeec
Q 042690          138 TSDLGLAKLLM  148 (266)
Q Consensus       138 l~Dfg~a~~~~  148 (266)
                      ++||+-|....
T Consensus       207 iID~~QaV~~~  217 (268)
T COG1718         207 IIDVSQAVTID  217 (268)
T ss_pred             EEECccccccC
Confidence            99999987654

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=95.84  E-value=0.026  Score=45.56  Aligned_cols=59  Identities=10%  Similarity=0.032  Sum_probs=38.7

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeee------------eHHHHhhhcCCCc--eeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVK------------KLDKVVHVAHHKN--LVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK------------~~~~~l~~~~h~~--iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      .+||+|..+.||+..     +..+++|            ++.+.++.+..-+  +.+++++....+...+|||+++|.
T Consensus         7 ~~i~~G~t~~~y~~~-----~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~   79 (226)
T TIGR02172         7 TQTGEGGNGESYTHK-----TGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGK   79 (226)
T ss_pred             eeecCCCCcceeEec-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCc
Confidence            478999999999732     1123333            3334555554332  466777777777788999999986

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=95.38  E-value=0.1  Score=42.45  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=39.4

Q ss_pred             eccCCCcc-eEEEEEEEcCCCcceeeeee-----------HHHHhhhcC-CCceeeeeeEEEeCCeEEEEEEcCCCCCHH
Q 042690           30 KKPCGGSF-STVYTGVLAPGDKTNIGVKK-----------LDKVVHVAH-HKNLVCLLGYHIEQECRLLVYKFMHNRSIS   96 (266)
Q Consensus        30 ~~ig~G~~-g~V~~~~~~~~~~~~vaiK~-----------~~~~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   96 (266)
                      ..|..|.+ ..||+....   +..+.+|+           +.++++.+. +--+.+++++....+..++|||+++|.++.
T Consensus         4 ~~~~~g~~~~~v~~~~~~---~~~~~vk~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   80 (244)
T cd05150           4 ERVTEGQSGATVYRLDGK---NPGLYLKIAPSGPTYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAA   80 (244)
T ss_pred             eecCCCCCcCeEEEEcCC---CCcEEEEecCCCcccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHh
Confidence            34555555 577777642   23444443           223444443 233556677776666788999999997776


Q ss_pred             HH
Q 042690           97 SL   98 (266)
Q Consensus        97 ~~   98 (266)
                      +.
T Consensus        81 ~~   82 (244)
T cd05150          81 AL   82 (244)
T ss_pred             Hh
Confidence            43

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=95.29  E-value=0.055  Score=52.83  Aligned_cols=175  Identities=13%  Similarity=0.023  Sum_probs=106.5

Q ss_pred             HHhhhcCCCceeeeeeEEEeCCe----EEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc----cee--
Q 042690           60 KVVHVAHHKNLVCLLGYHIEQEC----RLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC----RIL--  129 (266)
Q Consensus        60 ~~l~~~~h~~iv~~~~~~~~~~~----~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~----nil--  129 (266)
                      +.+.+..|+|++.++.+-.....    ..+..++|...++.+.+................+.+.+..++|.    +..  
T Consensus       234 ~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~  313 (1351)
T KOG1035|consen  234 ESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLHSLSLEHVVLS  313 (1351)
T ss_pred             HHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHHHhccceeEEe
Confidence            36678889999999998654322    22456788888888887765554443333333233333333333    222  


Q ss_pred             --------ecCCCEEEEe--ecCcceeeccccccccccccCCCCcCCccccCCCCCCc--ccchhhHHHHHHHHHhCCCc
Q 042690          130 --------LHDYFTVETS--DLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV--KVDVYSFGVMLLEIISCRCV  197 (266)
Q Consensus       130 --------i~~~~~~~l~--Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~--~~Di~slG~i~~~l~tg~~p  197 (266)
                              .+..+.....  ||+...........  .....+..+.++|......+..  ..|+|.+|.....+..+..+
T Consensus       314 ~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~--~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i  391 (1351)
T KOG1035|consen  314 ASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKS--FSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDI  391 (1351)
T ss_pred             cccccccccCccceeecchhhhcccccCCCcccc--hhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCcc
Confidence                    2233344444  77776654322111  1223455677788766555444  37999999999999998764


Q ss_pred             ccCCCC-c-----cccchHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          198 ERQGSD-P-----KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       198 ~~~~~~-~-----~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ...... .     .......+...+|+..++++|+++.+++...-
T Consensus       392 ~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f  436 (1351)
T KOG1035|consen  392 SEKSAVPVSLLDVLSTSELLDALPKCLDEDSEERLSALELLTHPF  436 (1351)
T ss_pred             cccccchhhhhccccchhhhhhhhhhcchhhhhccchhhhhhchh
Confidence            433211 1     11115677889999999999999999886643

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=95.12  E-value=0.21  Score=39.07  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             HHHhhhcCC-CceeeeeeEEEeCCeEEEEEEcCCCCCHHH---HHhhcCCCCHHHHHHHHHHHh--------------hh
Q 042690           59 DKVVHVAHH-KNLVCLLGYHIEQECRLLVYKFMHNRSISS---LLYECLRPTWQQRMQDCIRDC--------------WR  120 (266)
Q Consensus        59 ~~~l~~~~h-~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~---~l~~~~~~~~~~~l~~~~~~~--------------~~  120 (266)
                      .-+++.+.+ +++.+++|.|   + .++++||...+++..   .+.+.....|..+..+++..+              +-
T Consensus        10 ~lll~~l~~~~~~pk~lG~C---G-~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~l   85 (188)
T PF12260_consen   10 PLLLQLLQGSEPFPKLLGSC---G-RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYL   85 (188)
T ss_pred             HHHHHHcCCCCCCCCeeeEC---C-CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            346677775 6999999998   3 347899998665531   122223356777766666222              22


Q ss_pred             cCccccceeecCCCEEEEeecCcceee
Q 042690          121 TRALACRILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus       121 ~~~~h~nili~~~~~~~l~Dfg~a~~~  147 (266)
                      .++.++|+-++++|.+|++|.......
T Consensus        86 cDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   86 CDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             eecchHHeEEeCCCcEEEEechhcchh
Confidence            233445899999999999999877654

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=93.18  E-value=0.23  Score=39.63  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCC--ceeeeeeEEEe---CCeEEEEEEcCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHK--NLVCLLGYHIE---QECRLLVYKFMH   91 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~--~iv~~~~~~~~---~~~~~lv~e~~~   91 (266)
                      ++.+++|..+.||++...  + ..+++|...            .+++.+...  -+.+++.....   ....+++|++++
T Consensus         2 i~~l~~G~~n~~~~v~~~--~-~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~   78 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTD--D-GRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIP   78 (239)
T ss_dssp             EEEEEESSSSEEEEEEET--T-SEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEES
T ss_pred             CccCCCCCeeeEEEEEEC--C-cEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEec
Confidence            467889999999999973  3 578888663            133334322  34556654432   335789999999


Q ss_pred             CCCHHH
Q 042690           92 NRSISS   97 (266)
Q Consensus        92 ~~~L~~   97 (266)
                      +.++..
T Consensus        79 g~~~~~   84 (239)
T PF01636_consen   79 GRPLDD   84 (239)
T ss_dssp             SEEHHH
T ss_pred             cccccc
Confidence            987776

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=91.85  E-value=0.66  Score=38.86  Aligned_cols=29  Identities=10%  Similarity=-0.027  Sum_probs=21.8

Q ss_pred             hhhcCccccceeecCCCEEEEeecCccee
Q 042690          118 CWRTRALACRILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus       118 ~~~~~~~h~nili~~~~~~~l~Dfg~a~~  146 (266)
                      +.|+++.+.|+++++++...++||+.+..
T Consensus       177 l~HgD~~~~Nil~~~~~~~~iIDfe~a~~  205 (296)
T cd05153         177 VIHADLFRDNVLFDGDELSGVIDFYFACT  205 (296)
T ss_pred             CCccCcCcccEEEeCCceEEEeehhhhcC
Confidence            44455555599999988788999988764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=91.73  E-value=1.6  Score=34.43  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             cCCCceeeeeeEEEeCCeEEEEEEcCCC------CCHHHHHhhcCC-CCHHHHHHHHHHHhhhcC-----ccccceeecC
Q 042690           65 AHHKNLVCLLGYHIEQECRLLVYKFMHN------RSISSLLYECLR-PTWQQRMQDCIRDCWRTR-----ALACRILLHD  132 (266)
Q Consensus        65 ~~h~~iv~~~~~~~~~~~~~lv~e~~~~------~~L~~~l~~~~~-~~~~~~l~~~~~~~~~~~-----~~h~nili~~  132 (266)
                      ..+.+|.+++|+.+++...-+|+|.+..      -+|.+++.+..- ....+.+....+.+..++     +.+.||++..
T Consensus        74 ~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~  153 (199)
T PF10707_consen   74 VDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTEELRQALDEFKRYLLDHHIVIRDLNPHNIVVQR  153 (199)
T ss_pred             CcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccHHHHHHHHHHHHHHHHcCCeecCCCcccEEEEe
Confidence            3478999999999999888999998743      568888864332 123333444444444444     4455999874


Q ss_pred             CC----EEEEee
Q 042690          133 YF----TVETSD  140 (266)
Q Consensus       133 ~~----~~~l~D  140 (266)
                      ..    .++++|
T Consensus       154 ~~~~~~~lvlID  165 (199)
T PF10707_consen  154 RDSGEFRLVLID  165 (199)
T ss_pred             cCCCceEEEEEe
Confidence            42    577887

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PHA00451 protein kinase

Probab=91.46  E-value=0.12  Score=42.11  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=68.5

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH-----H--hhhcCCCceeeeeeEEEeCCeEEEEEEcCCC-----CC---
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----V--VHVAHHKNLVCLLGYHIEQECRLLVYKFMHN-----RS---   94 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----~--l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~-----~~---   94 (266)
                      +.||.|.|+..|.-...|+.--.|.+|++..     .  -.....+.|..+|++-...+.+-+|+++...     .+   
T Consensus        71 ~~LGNGHFSAAy~H~lLPgrVIKVGFKKEDSGAAYtAFCRM~QGR~GIPnVY~VaRHaGCYTVVLD~L~~C~r~~nd~h~  150 (362)
T PHA00451         71 NLLGNGHFSAAYSHELLPGRVIKVGFKKEDSGAAYTAFCRMHQGRAGIPNVYHVARHAGCYTVVLDYLNPCYRESNDVHH  150 (362)
T ss_pred             HHhcCcchhhHhhcccCCCeeEEeccccccccHHHHHHHHHhcCCCCCccHHHHHHhcCceEEehhhccccccccchHHH
Confidence            5889999999998776545444566677663     1  1123468888888887777777788777642     11   


Q ss_pred             ----HHHHHhhc---------CCCCHHHHHHHHHHH---hhhcCcccc-ceeecCCCEEEEeec
Q 042690           95 ----ISSLLYEC---------LRPTWQQRMQDCIRD---CWRTRALAC-RILLHDYFTVETSDL  141 (266)
Q Consensus        95 ----L~~~l~~~---------~~~~~~~~l~~~~~~---~~~~~~~h~-nili~~~~~~~l~Df  141 (266)
                          +..++.+.         ....+.+.++.+.+.   +.+-+ +|+ ||+.+++|.+.+.|=
T Consensus       151 ~ya~~a~~~~e~~~d~~~~~~~~~~FIETCk~IRkFF~GIASFD-mHSGNiMf~~~g~p~ITDP  213 (362)
T PHA00451        151 HYAAAAYIIIECCSDAAEEYPGSQEFIETCKMIRKFFYGIASFD-MHSGNIMFDQDGVPYITDP  213 (362)
T ss_pred             HHHHHHHHHHhccCCHHhccCCchhHHHHHHHHHHHHhhhhccc-ccCCceeeCCCCCeEecCC
Confidence                11222211         112344455544433   33333 555 999999999999984

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=90.71  E-value=0.024  Score=56.99  Aligned_cols=138  Identities=10%  Similarity=-0.035  Sum_probs=88.7

Q ss_pred             HhhhcCCCceeeeeeEEEe--CCeEEEEEEcCCCCCHHHHHhhcCC--CCHHHH-HHHHH-------HHhhhcCccc---
Q 042690           61 VVHVAHHKNLVCLLGYHIE--QECRLLVYKFMHNRSISSLLYECLR--PTWQQR-MQDCI-------RDCWRTRALA---  125 (266)
Q Consensus        61 ~l~~~~h~~iv~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~--~~~~~~-l~~~~-------~~~~~~~~~h---  125 (266)
                      ..++..|+++...+.-...  ....|.+++|+.+|.+...+..+..  ....+. +...+       ..++....+-   
T Consensus      1282 e~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~ 1361 (2724)
T KOG1826|consen 1282 ELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTN 1361 (2724)
T ss_pred             hhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccc
Confidence            4556688888776655432  2356889999999999998875422  111111 11111       1122111111   


Q ss_pred             -------cceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcc
Q 042690          126 -------CRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVE  198 (266)
Q Consensus       126 -------~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~  198 (266)
                             -|.+|..+-.++++++|+.+... +.........+++.|++|++.....++.++|+|..|+.+|+.-.|..++
T Consensus      1362 v~~~Lkf~lpmIVtny~v~~gk~gLdKIkn-p~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1362 VSKSLKFTLPMIVTNYNVKLGKGGLDKIKN-PVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             hhhhhhhhccceecCCcccccccccccccC-chHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence                   15677777788999999998432 2233334466778889999877767787899999999999988777655


Q ss_pred             c
Q 042690          199 R  199 (266)
Q Consensus       199 ~  199 (266)
                      .
T Consensus      1441 i 1441 (2724)
T KOG1826|consen 1441 I 1441 (2724)
T ss_pred             H
Confidence            3

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=90.40  E-value=1.2  Score=37.71  Aligned_cols=29  Identities=10%  Similarity=0.002  Sum_probs=22.3

Q ss_pred             hhhcCccccceeecCCCEEEEeecCccee
Q 042690          118 CWRTRALACRILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus       118 ~~~~~~~h~nili~~~~~~~l~Dfg~a~~  146 (266)
                      ++|+++.+.|+++++++...++||+.+..
T Consensus       189 l~HgD~~~~Nvl~~~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       189 VIHADLFPDNVLFDGDSVKGVIDFYFACT  217 (307)
T ss_pred             cCCCCCCcCcEEEECCceEEEeecccccC
Confidence            44555555699999988778999998854

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=89.04  E-value=2.2  Score=34.93  Aligned_cols=29  Identities=10%  Similarity=-0.089  Sum_probs=21.3

Q ss_pred             hhhcCccccceeecCCCEEEEeecCcceee
Q 042690          118 CWRTRALACRILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus       118 ~~~~~~~h~nili~~~~~~~l~Dfg~a~~~  147 (266)
                      +.|++..+.|+++++++ +.++||..+...
T Consensus       148 l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~g  176 (256)
T TIGR02721       148 PLHMDVHAYNLVVTPQG-LKLIDWEYASDG  176 (256)
T ss_pred             eecCCCCcCcEEEeCCC-CEEEeccccCcC
Confidence            34555555699998877 789999888653

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=88.25  E-value=2.5  Score=36.66  Aligned_cols=60  Identities=10%  Similarity=0.057  Sum_probs=37.2

Q ss_pred             eccCCCcceEEEEEEEcCCCcceeeeeeHHH---------------------HhhhcC--CC-ceeeeeeEEEeCCeEEE
Q 042690           30 KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------------------VVHVAH--HK-NLVCLLGYHIEQECRLL   85 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------------------~l~~~~--h~-~iv~~~~~~~~~~~~~l   85 (266)
                      +.||.|....||++... +.+..+.||.-..                     .|+...  -| .+.++|.+  ++....+
T Consensus         1 ~EigdGnlN~VfrV~~~-~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~~~~   77 (370)
T TIGR01767         1 QEVGDGNLNLVFHVYDQ-EGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEMAVT   77 (370)
T ss_pred             CcCCCCceEEEEEEEcC-CCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--cccccee
Confidence            36899999999999963 3335677775442                     222222  13 45556655  3445568


Q ss_pred             EEEcCCC
Q 042690           86 VYKFMHN   92 (266)
Q Consensus        86 v~e~~~~   92 (266)
                      |||++..
T Consensus        78 vMEdL~~   84 (370)
T TIGR01767        78 VMEDLSH   84 (370)
T ss_pred             hHhhCcc
Confidence            9999853

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PLN02756 S-methyl-5-thioribose kinase

Probab=86.82  E-value=5.2  Score=35.41  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------------HHhhhcC---CCceeeeeeEEEeCC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------------KVVHVAH---HKNLVCLLGYHIEQE   81 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------------~~l~~~~---h~~iv~~~~~~~~~~   81 (266)
                      ....+.||.|....||+...   .+..+.||.-.                     +.|+.+.   ...+.+++.++.  .
T Consensus        34 ~l~~~eiggGn~N~VyrV~~---~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d  108 (418)
T PLN02756         34 DLKIKEVGDGNLNFVYIVVS---SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--T  108 (418)
T ss_pred             CceEEEcCCCceeeEEEEEc---CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--C
Confidence            34578899999999999875   23346666433                     1232222   347777888776  3


Q ss_pred             eEEEEEEcCCC--CCHHHHH
Q 042690           82 CRLLVYKFMHN--RSISSLL   99 (266)
Q Consensus        82 ~~~lv~e~~~~--~~L~~~l   99 (266)
                      ..+++||++++  ..+.+.+
T Consensus       109 ~~vlvME~L~~~~~ilr~~L  128 (418)
T PLN02756        109 MALIGMRYLEPPHIILRKGL  128 (418)
T ss_pred             CCEEEEeecCCcceehhhhh
Confidence            45688999976  3444444

>PLN02876 acyl-CoA dehydrogenase

Probab=84.01  E-value=1.9  Score=41.87  Aligned_cols=68  Identities=9%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             eeeccCCCcceEEEEEEEcCCC-cceeeeeeH---------------HHHhhhcC-CCce--eeeeeEEEeC---CeEEE
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGD-KTNIGVKKL---------------DKVVHVAH-HKNL--VCLLGYHIEQ---ECRLL   85 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~-~~~vaiK~~---------------~~~l~~~~-h~~i--v~~~~~~~~~---~~~~l   85 (266)
                      .++.++.|.+..+|+.....+. ...+++|+.               .++++.+. |+++  .+++.++.+.   +..++
T Consensus        42 ~v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~fl  121 (822)
T PLN02876         42 KVSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFY  121 (822)
T ss_pred             eEEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceE
Confidence            4678899999999988764211 134555443               13666665 5654  6777777654   45789


Q ss_pred             EEEcCCCCCH
Q 042690           86 VYKFMHNRSI   95 (266)
Q Consensus        86 v~e~~~~~~L   95 (266)
                      ||||++|..+
T Consensus       122 VME~v~G~~~  131 (822)
T PLN02876        122 IMEYLEGRIF  131 (822)
T ss_pred             EEEecCCccc
Confidence            9999998643

>PRK10593 hypothetical protein; Provisional

Probab=82.68  E-value=3.4  Score=34.83  Aligned_cols=70  Identities=4%  Similarity=-0.000  Sum_probs=45.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeee------------HHHHhhhcCC---CceeeeeeEEEe---CCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKK------------LDKVVHVAHH---KNLVCLLGYHIE---QECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~------------~~~~l~~~~h---~~iv~~~~~~~~---~~~~~lv   86 (266)
                      ...-.+.||+|..+.||+....  +++ +.+|.            +.+.++.+..   -.+.++++++..   .+..++|
T Consensus        15 ~~~~~~~i~~G~~~~vy~~~~~--~~~-~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LV   91 (297)
T PRK10593         15 KLSRVECISEQPYAALWALYDS--QGN-PMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLL   91 (297)
T ss_pred             hhheeeecCCccceeEEEEEcC--CCC-EEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEE
Confidence            5666779999999999987642  333 22222            2234444432   356777777654   3568999


Q ss_pred             EEcCCCCCHHH
Q 042690           87 YKFMHNRSISS   97 (266)
Q Consensus        87 ~e~~~~~~L~~   97 (266)
                      ||+++++++.+
T Consensus        92 mE~i~G~~~~~  102 (297)
T PRK10593         92 LERLRGVSVEA  102 (297)
T ss_pred             EeccCCEecCC
Confidence            99999987654

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=80.97  E-value=0.46  Score=42.46  Aligned_cols=55  Identities=15%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~   80 (266)
                      .++..+.+|.|+||+|+.+... .++..+|||++.               .-+..+.|++++.++..|...
T Consensus        50 ~~e~~~~~~~~g~~~~~~~~n~-~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~~  119 (516)
T KOG1033|consen   50 DFEPGQCLGRGGFGVVFSAQNK-ADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYER  119 (516)
T ss_pred             cccccccccccCccccCCcccc-ccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceecC
Confidence            4666778999999999999975 566788999886               245577899999998887643

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=80.81  E-value=8.7  Score=33.28  Aligned_cols=29  Identities=14%  Similarity=-0.027  Sum_probs=25.0

Q ss_pred             HHhhhcCcccc-ceeecCCCEEEEeecCcc
Q 042690          116 RDCWRTRALAC-RILLHDYFTVETSDLGLA  144 (266)
Q Consensus       116 ~~~~~~~~~h~-nili~~~~~~~l~Dfg~a  144 (266)
                      .++.+.++-|. ||+++.+|.+.-+|||..
T Consensus       202 ~YiLgigDRH~~NILi~~~G~~~HIDFG~i  231 (352)
T cd00891         202 TYVLGIGDRHNDNIMLTKTGHLFHIDFGHF  231 (352)
T ss_pred             HHHccccccCCCceEECCCCCEEEEehHHh
Confidence            66667777777 999999999999999985

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=80.02  E-value=17  Score=32.21  Aligned_cols=70  Identities=11%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             eeeccCCCcceEEEEEEEcCCCc-ceeeeeeHH---------------------HHhhhc---CCCceeeeeeEEEeCCe
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDK-TNIGVKKLD---------------------KVVHVA---HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~-~~vaiK~~~---------------------~~l~~~---~h~~iv~~~~~~~~~~~   82 (266)
                      ..+.||.|....||++...  ++ +.+.||.-.                     +.|+.+   ....+.+++.+.  ...
T Consensus        30 ~~~elggGn~N~VyrV~~~--~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~D--~~~  105 (401)
T PRK09550         30 TAREIGDGNLNLVFRVSDT--EGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHYD--EEL  105 (401)
T ss_pred             eeeEcCCCceEEEEEEEeC--CCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCC
Confidence            3578999999999999974  33 468888521                     133332   234677777763  355


Q ss_pred             EEEEEEcCCCCC-HHHHHhh
Q 042690           83 RLLVYKFMHNRS-ISSLLYE  101 (266)
Q Consensus        83 ~~lv~e~~~~~~-L~~~l~~  101 (266)
                      .++||||+++.. +.+.+..
T Consensus       106 ~~lVME~L~~~~~lr~~Ll~  125 (401)
T PRK09550        106 AVTVMEDLSDHKILRKGLID  125 (401)
T ss_pred             CEEEEecCCCccHHHHHHhc
Confidence            679999998643 4444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-16
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-16
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-15
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-13
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		7e-12
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-11
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-11
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-10
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		4e-07
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		6e-07
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		6e-07
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		6e-07
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		6e-07
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-06
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		1e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-06
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-06
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-06
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-06
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-06
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-06
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		3e-06
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		3e-06
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		3e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-06
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-06
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-06
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-06
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-06
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-06
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		1e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		1e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		1e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		2e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		3e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		3e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		3e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		3e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		3e-05
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		3e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		4e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		4e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		4e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		5e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		5e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		5e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		5e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		5e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		5e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		5e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		5e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		5e-05
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		7e-05
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		1e-04
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		1e-04
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-04
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		1e-04
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		1e-04
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		1e-04
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		1e-04
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		1e-04
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		1e-04
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		1e-04
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-04
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		1e-04
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		1e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		1e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		1e-04
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		1e-04
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		1e-04
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		1e-04
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-04
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		2e-04
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		3e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		3e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		3e-04
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		3e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		3e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		4e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		4e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		4e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		4e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		6e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		6e-04
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		7e-04

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK------------VVHVAHHKNLVCLLGYHIEQEC 82
           G F  VY GVL  G K  +  +  +              +    H +LV L+G+  E+  
Sbjct: 50  GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109
Query: 83  RLLVYKFMHNRSISSLLYECLRPT----WQQRMQDCIRDC-----WRTRALACR------ 127
            +L+YK+M N ++   LY    PT    W+QR++ CI          TRA+  R      
Sbjct: 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSIN 169
Query: 128 ILLHDYFTVETSDLGLAKL-LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV 186
           ILL + F  + +D G++K    ++QT     ++ T GY+ PE+F    +T K DVYSFGV
Sbjct: 170 ILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 187 MLLEIISCRCV 197
           +L E++  R  
Sbjct: 230 VLFEVLCARSA 240

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK------------VVHVAHHKNLVCLLGYHIEQEC 82
           G F  VY GVL  G K  +  +  +              +    H +LV L+G+  E+  
Sbjct: 50  GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109
Query: 83  RLLVYKFMHNRSISSLLYECLRPT----WQQRMQDCIRDC-----WRTRALACR------ 127
            +L+YK+M N ++   LY    PT    W+QR++ CI          TRA+  R      
Sbjct: 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSIN 169
Query: 128 ILLHDYFTVETSDLGLAKL-LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV 186
           ILL + F  + +D G++K    + QT     ++ T GY+ PE+F    +T K DVYSFGV
Sbjct: 170 ILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 187 MLLEIISCRCV 197
           +L E++  R  
Sbjct: 230 VLFEVLCARSA 240

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 92/208 (44%), Gaps = 40/208 (19%)
Query: 24  SHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHH 67
           S  +S K   G G F  VY G LA G  T + VK+L +               ++ +A H
Sbjct: 37  SDNFSNKNILGRGGFGKVYKGRLADG--TLVAVKRLKEERXQGGELQFQTEVEMISMAVH 94
Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP------TWQQRMQ--------- 112
           +NL+ L G+ +    RLLVY +M N S++S L E  RP       W +R +         
Sbjct: 95  RNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE--RPESQPPLDWPKRQRIALGSARGL 152
Query: 113 -----DCIRDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                 C          A  ILL + F     D GLAKL+          +R T G++ P
Sbjct: 153 AYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAP 212
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIISCR 195
           E+      + K DV+ +GVMLLE+I+ +
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQ 240

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 39/196 (19%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHHKNLVCLLGYHIE 79
           G F  VY G LA G    + VK+L +               ++ +A H+NL+ L G+ + 
Sbjct: 41  GGFGKVYKGRLADG--XLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 98
Query: 80  QECRLLVYKFMHNRSISSLLYECLRP------TWQQRMQ--------------DCIRDCW 119
              RLLVY +M N S++S L E  RP       W +R +               C     
Sbjct: 99  PTERLLVYPYMANGSVASCLRE--RPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKII 156
Query: 120 RTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                A  ILL + F     D GLAKL+          +R   G++ PE+      + K 
Sbjct: 157 HRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKT 216
Query: 180 DVYSFGVMLLEIISCR 195
           DV+ +GVMLLE+I+ +
Sbjct: 217 DVFGYGVMLLELITGQ 232

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 90/207 (43%), Gaps = 39/207 (18%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA------------------HHKNLVCLLGY 76
           G F  VY G +   + T + VKKL  +V +                    H+NLV LLG+
Sbjct: 42  GGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGF 98
Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRPT----WQQR------MQDCIRDCWRTRAL-- 124
             + +   LVY +M N S+   L  CL  T    W  R        + I        +  
Sbjct: 99  SSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHR 157
Query: 125 ---ACRILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
              +  ILL + FT + SD GLA+      QT   + +  T  Y+ PE  R   +T K D
Sbjct: 158 DIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRG-EITPKSD 216
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTL 207
           +YSFGV+LLEII+      +  +P+ L
Sbjct: 217 IYSFGVVLLEIITGLPAVDEHREPQLL 243

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 89/207 (42%), Gaps = 39/207 (18%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA------------------HHKNLVCLLGY 76
           G F  VY G +   + T + VKKL  +V +                    H+NLV LLG+
Sbjct: 42  GGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGF 98
Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRPT----WQQR------MQDCIRDCWRTRAL-- 124
             + +   LVY +M N S+   L  CL  T    W  R        + I        +  
Sbjct: 99  SSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHR 157
Query: 125 ---ACRILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
              +  ILL + FT + SD GLA+      QT     +  T  Y+ PE  R   +T K D
Sbjct: 158 DIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRG-EITPKSD 216
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTL 207
           +YSFGV+LLEII+      +  +P+ L
Sbjct: 217 IYSFGVVLLEIITGLPAVDEHREPQLL 243

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 88/207 (42%), Gaps = 39/207 (18%)
Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA------------------HHKNLVCLLGY 76
           G F  VY G +   + T + VKKL  +V +                    H+NLV LLG+
Sbjct: 36  GGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGF 92
Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRPT----WQQR------MQDCIRDCWRTRAL-- 124
             + +   LVY +M N S+   L  CL  T    W  R        + I        +  
Sbjct: 93  SSDGDDLCLVYVYMPNGSLLDRL-SCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHR 151
Query: 125 ---ACRILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
              +  ILL + FT + SD GLA+      Q      +  T  Y+ PE  R   +T K D
Sbjct: 152 DIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRG-EITPKSD 210
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTL 207
           +YSFGV+LLEII+      +  +P+ L
Sbjct: 211 IYSFGVVLLEIITGLPAVDEHREPQLL 237

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 106/271 (39%), Gaps = 69/271 (25%)
Query: 30  KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA------------------HHKNLV 71
            K   G F  VY G +   + T + VKKL  +V +                    H+NLV
Sbjct: 28  NKXGEGGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLV 84
Query: 72  CLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT----WQQR------MQDCIRDCWRT 121
            LLG+  + +   LVY +  N S+   L  CL  T    W  R        + I      
Sbjct: 85  ELLGFSSDGDDLCLVYVYXPNGSLLDRL-SCLDGTPPLSWHXRCKIAQGAANGINFLHEN 143
Query: 122 RAL-----ACRILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRNMPV 175
             +     +  ILL + FT + SD GLA+      Q    + +  T  Y  PE  R   +
Sbjct: 144 HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRG-EI 202
Query: 176 TVKVDVYSFGVMLLEIIS----------------------------CRCVERQ--GSDPK 205
           T K D+YSFGV+LLEII+                               ++++   +D  
Sbjct: 203 TPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADST 262
Query: 206 TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ 236
           ++E    +A Q + EK   RP ++ V  +LQ
Sbjct: 263 SVEAXYSVASQCLHEKKNKRPDIKKVQQLLQ 293

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             IL+     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 145 ANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIG---TAQYLSPEQARGDSVDARSD 201
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + PV +A Q V+E  P+ PS R
Sbjct: 202 VYSLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVRED-PIPPSAR 242

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 145 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSD 201
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + PV +A Q V+E  P+ PS R
Sbjct: 202 VYSLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVRED-PIPPSAR 242

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 145 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSD 201
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + PV +A Q V+E  P+ PS R
Sbjct: 202 VYSLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVRED-PIPPSAR 242

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 145 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSD 201
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + PV +A Q V+E  P+ PS R
Sbjct: 202 VYSLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVRED-PIPPSAR 242

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 162 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSD 218
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + PV +A Q V+E  P+ PS R
Sbjct: 219 VYSLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVRED-PIPPSAR 259

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 103/262 (39%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG F  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 18  KLGGGQFGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 77  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 136
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 137 ARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 196
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G DP  + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 197 GVLLWEIATYGMSPYPGIDPSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 253
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 254 RPSFAEIHQAFETMFQESSISD 275

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 22  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 81
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 82  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 141
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ ++  +  ++    +T 
Sbjct: 142 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSV--HNKTG 197
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 198 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 27/184 (14%)
Query: 35  GSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVCLLGYHIEQECR 83
           G F  V+ G     DK  I     G    D  +  A       H  LV L G  +EQ   
Sbjct: 38  GQFGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQAPI 97
Query: 84  LLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCWRTRALACR-IL 129
            LV++FM +  +S             +LL  CL     + M      C   R LA R  L
Sbjct: 98  CLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEACVIHRDLAARNCL 155
Query: 130 LHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLL 189
           + +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K DV+SFGV++ 
Sbjct: 156 VGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMW 215
Query: 190 EIIS 193
           E+ S
Sbjct: 216 EVFS 219

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 19  VFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH--------- 66
           V G  S I    +  G G F  VY G L   D   I   VK L+++  +           
Sbjct: 23  VIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI 82
Query: 67  ------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECLRPT 106
                 H N++ LLG              Y    + R  +    HN ++  L+   L+  
Sbjct: 83  IMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVA 142
Query: 107 WQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
             + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T   L
Sbjct: 143 --KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSV--HNKTGAKL 198
Query: 166 PPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
           P +W      +    T K DV+SFGV+L E+++
Sbjct: 199 PVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 80  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 139
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 140 EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 199
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 200 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV--HNKTG 255
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 256 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 291

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 18  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLR------------PTWQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 77  TREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 136
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 137 ARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 196
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G DP  + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 197 GVLLWEIATYGMSPYPGIDPSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 253
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 254 RPSFAEIHQAFETMFQESSISD 275

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 42/226 (18%)
Query: 29  LKKPCGGSFSTVY-------------TGVLAPGDKTNIGVKKLDKVVHVAH---HKNLVC 72
           + K  GG  STVY               +  P  +    +K+ ++ VH +    H+N+V 
Sbjct: 16  VDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVS 75
Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLYECLRP-------TWQQRMQDCIRDCWRTRALA 125
           ++    E +C  LV +++   ++S  + E   P        +  ++ D I+     R + 
Sbjct: 76  MIDVDEEDDCYYLVMEYIEGPTLSEYI-ESHGPLSVDTAINFTNQILDGIKHAHDMRIVH 134
Query: 126 -----CRILLHDYFTVETSDLGLAKLLM---INQTQTLTGMRETKGYLPPEWFRNMPVTV 177
                  IL+    T++  D G+AK L    + QT  + G   T  Y  PE  +      
Sbjct: 135 RDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLG---TVQYFSPEQAKGEATDE 191
Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
             D+YS G++L E++        G  P   E  V IAI+ +++  P
Sbjct: 192 CTDIYSIGIVLYEMLV-------GEPPFNGETAVSIAIKHIQDSVP 230

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 21  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 80
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 81  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 140
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 141 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV--HNKTG 196
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 197 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 21  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 80
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 81  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 140
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 141 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV--HNKTG 196
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 197 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 22  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 81
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 82  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 141
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 142 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV--HNKTG 197
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 198 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 26  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 85
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 86  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 145
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 146 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV--HNKTG 201
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 202 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 237

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 13  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 72
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 73  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 132
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 133 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH--NKTG 188
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 189 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 224

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 38/214 (17%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 19  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 78
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 79  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 138
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLM---INQTQTLTGMR 159
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +     +     TG +
Sbjct: 139 QVA--KGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK 196
Query: 160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
               ++  E  +    T K DV+SFGV+L E+++
Sbjct: 197 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 39  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 98
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 99  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 158
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 159 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH--NKTG 214
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 215 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 250

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 21  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 80
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 81  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 140
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 141 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV--HNKTG 196
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 197 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 40  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 99
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 100 EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 159
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 160 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH--NKTG 215
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 216 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 251

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVC 72
           S +  +++   G F  V+ G     DK  I     G    +  +  A       H  LV 
Sbjct: 7   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 73  LLGYHIEQECRLLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCW 119
           L G  +EQ    LV++FM +  +S             +LL  CL     + M      C 
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEACV 124
Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K
Sbjct: 125 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 184
Query: 179 VDVYSFGVMLLEIIS 193
            DV+SFGV++ E+ S
Sbjct: 185 SDVWSFGVLMWEVFS 199

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 32/256 (12%)
Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVC 72
           S +  +++   G F  V+ G     DK  I     G    +  +  A       H  LV 
Sbjct: 10  SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 69
Query: 73  LLGYHIEQECRLLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCW 119
           L G  +EQ    LV++FM +  +S             +LL  CL     + M      C 
Sbjct: 70  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEACV 127
Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K
Sbjct: 128 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 187
Query: 179 VDVYSFGVMLLEIISCRCVERQG-SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS 237
            DV+SFGV++ E+ S   +  +  S+ + +E    I+  F   KP L  S  +  +M   
Sbjct: 188 SDVWSFGVLMWEVFSEGKIPYENRSNSEVVED---ISTGFRLYKPRL-ASTHVYQIMNHC 243
Query: 238 ILEVPSPPCSFAFAIR 253
             E P    +F+  +R
Sbjct: 244 WRERPEDRPAFSRLLR 259

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVC 72
           S +  +++   G F  V+ G     DK  I     G    +  +  A       H  LV 
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 64
Query: 73  LLGYHIEQECRLLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCW 119
           L G  +EQ    LV++FM +  +S             +LL  CL     + M      C 
Sbjct: 65  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEACV 122
Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K
Sbjct: 123 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 182
Query: 179 VDVYSFGVMLLEIIS 193
            DV+SFGV++ E+ S
Sbjct: 183 SDVWSFGVLMWEVFS 197

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 18  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 77
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 78  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 137
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 138 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH--NKTG 193
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 194 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 229

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 19  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 78
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 79  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 138
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 139 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV--HNKTG 194
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 195 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 16  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 75
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 76  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 135
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 136 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV--HNKTG 191
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 192 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 227

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 21  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 80
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 81  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 140
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 141 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVH--NKTG 196
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 197 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 16  ENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNI--GVKKLDKVVHVAH------ 66
           ++ V G  S I    +  G G F  VY G L   D   I   VK L+++  +        
Sbjct: 20  QHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLT 79
Query: 67  ---------HKNLVCLLG--------------YHIEQECRLLVYKFMHNRSISSLLYECL 103
                    H N++ LLG              Y    + R  +    HN ++  L+   L
Sbjct: 80  EGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGL 139
Query: 104 RPTWQQRMQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
           +    + M+      +  R LA R  +L + FTV+ +D GLA+ +   +  ++    +T 
Sbjct: 140 QVA--KGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV--HNKTG 195
Query: 163 GYLPPEW-----FRNMPVTVKVDVYSFGVMLLEIIS 193
             LP +W      +    T K DV+SFGV+L E+++
Sbjct: 196 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 126 CRILLHDYFTVETSDLGLAKLLM-----INQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
             I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + D
Sbjct: 145 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSD 201
Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
           VYS G +L E+++       G  P T + P  +A Q V+E  P+ PS R
Sbjct: 202 VYSLGCVLYEVLT-------GEPPFTGDSPDSVAYQHVRED-PIPPSAR 242

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 18  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 76
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 77  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 136
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 137 ARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 196
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G DP  + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 197 GVLLWEIATYGMSPYPGIDPSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 253
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 254 RPSFAEIHQAFETMFQESSISD 275

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 32/256 (12%)
Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVC 72
           S +  +++   G F  V+ G     DK  I     G    +  +  A       H  LV 
Sbjct: 8   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 67
Query: 73  LLGYHIEQECRLLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCW 119
           L G  +EQ    LV +FM +  +S             +LL  CL     + M      C 
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEACV 125
Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K
Sbjct: 126 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 185
Query: 179 VDVYSFGVMLLEIISCRCVERQG-SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS 237
            DV+SFGV++ E+ S   +  +  S+ + +E    I+  F   KP L  S  +  +M   
Sbjct: 186 SDVWSFGVLMWEVFSEGKIPYENRSNSEVVED---ISTGFRLYKPRL-ASTHVYQIMNHC 241
Query: 238 ILEVPSPPCSFAFAIR 253
             E P    +F+  +R
Sbjct: 242 WRERPEDRPAFSRLLR 257

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 71  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 130
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 131 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSPP 190
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 191 EVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 145 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 204
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 205 GILLTEIVT 213

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 138 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 197
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 198 GILLTEIVT 206

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 137 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 197 GILLTEIVT 205

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 139 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 198
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 199 GILLTEIVT 207

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 143 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 202
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 203 GILLTEIVT 211

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 137 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 197 GILLTEIVT 205

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D   V  SDLGLA  L   QT+T  G   T G++ PE          VD ++ GV 
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDFSVDYFALGVT 378
Query: 188 LLEIISCR 195
           L E+I+ R
Sbjct: 379 LYEMIAAR 386

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D   V  SDLGLA  L   QT+T  G   T G++ PE          VD ++ GV 
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDFSVDYFALGVT 378
Query: 188 LLEIISCR 195
           L E+I+ R
Sbjct: 379 LYEMIAAR 386

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 146 AANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 205
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 206 GILLTEIVT 214

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D   V  SDLGLA  L   QT+T  G   T G++ PE          VD ++ GV 
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDFSVDYFALGVT 378
Query: 188 LLEIISCR 195
           L E+I+ R
Sbjct: 379 LYEMIAAR 386

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL D   V  SDLGLA  L   QT+T  G   T G++ PE          VD ++ GV 
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKT-KGYAGTPGFMAPELLLGEEYDFSVDYFALGVT 378
Query: 188 LLEIISCR 195
           L E+I+ R
Sbjct: 379 LYEMIAAR 386

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 71  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 130
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 131 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 190
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 191 EVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 137 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 197 GILLTEIVT 205

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 147 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 206
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 207 GILLTEIVT 215

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 143 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 202
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 203 GILLTEIVT 211

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 133 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 192
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 193 GILLTEIVT 201

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 132 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 191
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 192 GILLTEIVT 200

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K DV+SF
Sbjct: 142 AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 201
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 202 GILLTEIVT 210

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 62  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 121
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 122 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 181
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 182 EVLMYSKFSSKSDIWAFGVLMWEIYS 207

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 30/265 (11%)
Query: 11  DPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------- 60
           DPS   ++     + I    K  GG +  VY GV      T + VK L +          
Sbjct: 4   DPSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLK 62
Query: 61  ---VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQ--------- 108
              V+    H NLV LLG    +    ++ +FM   ++   L EC R             
Sbjct: 63  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 122
Query: 109 ---QRMQDCIRDCWRTRALACRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGY 164
                M+   +  +  R LA R  L+ +   V+ +D GL++L+  +      G +    +
Sbjct: 123 QISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW 182
Query: 165 LPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPL 224
             PE       ++K DV++FGV+L EI +       G D   + +  ++   +  E+P  
Sbjct: 183 TAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEG 240
Query: 225 RPSLRIVALMLQSILEVPSPPCSFA 249
            P  ++  LM       PS   SFA
Sbjct: 241 CPE-KVYELMRACWQWNPSDRPSFA 264

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 51  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 110
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 111 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 171 EVLMYSKFSSKSDIWAFGVLMWEIYS 196

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 55  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 114
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 115 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 174
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 175 EVLMYSKFSSKSDIWAFGVLMWEIYS 200

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 56  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 115
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 116 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 175
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 176 EVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL D+  +  SDLGLA  + + + QT+ G   T GY+ PE  +N   T   D ++ G +
Sbjct: 317 ILLDDHGHIRISDLGLA--VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCL 374
Query: 188 LLEIIS 193
           L E+I+
Sbjct: 375 LYEMIA 380

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 21  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 79
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 80  TREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 139
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 140 ARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 199
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 200 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 256
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 257 RPSFAEIHQAFETMFQESSISD 278

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 27/195 (13%)
Query: 24  SHIYSLKKPCGGSFSTVYTGVLAPGDKTNI-----GVKKLDKVVHVAH------HKNLVC 72
           S +  +++   G F  V+ G     DK  I     G    +  +  A       H  LV 
Sbjct: 7   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 73  LLGYHIEQECRLLVYKFMHNRSIS-------------SLLYECLRPTWQQRMQDCIRDCW 119
           L G  +EQ    LV++FM +  +S             +LL  CL     + M        
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC--EGMAYLEEASV 124
Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K
Sbjct: 125 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 184
Query: 179 VDVYSFGVMLLEIIS 193
            DV+SFGV++ E+ S
Sbjct: 185 SDVWSFGVLMWEVFS 199

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           ILL D+  +  SDLGLA  + + + QT+ G   T GY+ PE  +N   T   D ++ G +
Sbjct: 317 ILLDDHGHIRISDLGLA--VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCL 374
Query: 188 LLEIIS 193
           L E+I+
Sbjct: 375 LYEMIA 380

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 60  KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPTWQQRMQDCIRDC 118
           KV+    H+ LV L G   +Q    ++ ++M N  + + L E   R   QQ ++ C   C
Sbjct: 56  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 115
Query: 119 WRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
                L  +  LH           D   V+ SD GL++ ++ ++  +  G +    + PP
Sbjct: 116 EAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRWSPP 175
Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIIS 193
           E       + K D+++FGV++ EI S
Sbjct: 176 EVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 83
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 84  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 143
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 144 ARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 203
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 204 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 260
Query: 245 PCSFA 249
             SFA
Sbjct: 261 RPSFA 265

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 33  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 91
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 92  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 151
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 152 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 211
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 212 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 268
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 269 RPSFAEIHQAFETMFQESSISD 290

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 83
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 84  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 143
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 144 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 203
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 204 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 260
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 261 RPSFAEIHQAFETMFQESSISD 282

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 266 KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 324
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 325 TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRNLA 384
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 385 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 444
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 445 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 501
Query: 245 PCSFA 249
             SFA
Sbjct: 502 RPSFA 506

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSFA 249
             SFA
Sbjct: 256 RPSFA 260

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 80
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 81  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 140
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 141 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 200
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 201 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 257
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 258 RPSFAEIHQAFETMFQESSISD 279

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 80
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 81  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 140
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 141 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 200
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 201 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 257
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 258 RPSFAEIHQAFETMFQESSISD 279

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 256 RPSFAEIHQAFETMFQESSISD 277

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 256 RPSFAEIHQAFETMFQESSISD 277

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 227 KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 285
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLR------------PTWQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 286 TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLA 345
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 346 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 405
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 406 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 462
Query: 245 PCSFA 249
             SFA
Sbjct: 463 RPSFA 467

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 256 RPSFAEIHQAFETMFQESSISD 277

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 83
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 84  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 143
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 144 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 203
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 204 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 260
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 261 RPSFAEIHQAFETMFQESSISD 282

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 83
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 84  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 143
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 144 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 203
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 204 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 260
Query: 245 PCSFA 249
             SFA
Sbjct: 261 RPSFA 265

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 83
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 84  TREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 143
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 144 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 203
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 204 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 260
Query: 245 PCSFA 249
             SFA
Sbjct: 261 RPSFA 265

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 80
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 81  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 140
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 141 ARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAF 200
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 201 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 257
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 258 RPSFAEIHQAFETMFQESSISD 279

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 30/245 (12%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSFA 249
             SFA
Sbjct: 256 RPSFA 260

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 21  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 79
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQ------------QRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 80  TREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA 139
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 140 ARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAF 199
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 200 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 256
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 257 RPSFAEIHQAFETMFQESSISD 278

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 35/262 (13%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 78
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLR------------PTWQQRMQDCIRDCWRTRALA 125
             +    ++ +FM   ++   L EC R                  M+   +  +  R LA
Sbjct: 79  TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA 138
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 139 ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 198
Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
           GV+L EI +       G D   + +  ++   +  E+P   P  ++  LM       PS 
Sbjct: 199 GVLLWEIATYGMSPYPGIDLSQVYE--LLEKDYRMERPEGCPE-KVYELMRACWQWNPSD 255
Query: 245 PCSF-----AFAIRIGSSAISQ 261
             SF     AF      S+IS 
Sbjct: 256 RPSFAEIHQAFETMFQESSISD 277

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 33/189 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V+ P  +     +    V+    H N++  +GY  +   
Sbjct: 47  GSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNL 106
Query: 83  RLL--------VYKFMHNRSISSLLYECL---RPTWQQRMQDCIRDCWRTRALACRILLH 131
            ++        +YK +H +     +++ +   R T Q       ++       +  I LH
Sbjct: 107 AIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLH 166
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +     Q +  TG   +  ++ PE  R   N P + + DVYS+
Sbjct: 167 EGLTVKIGDFGLATVKSRWSGSQQVEQPTG---SVLWMAPEVIRMQDNNPFSFQSDVYSY 223
Query: 185 GVMLLEIIS 193
           G++L E+++
Sbjct: 224 GIVLYELMT 232

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 41  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 100
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 101 VSLQSLPRFILMELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 159
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 160 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 218
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 219 EGIFTSKTDTWSFGVLLWEIFS 240

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 33  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 92
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 93  VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 151
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 152 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 210
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 211 EGIFTSKTDTWSFGVLLWEIFS 232

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+ D  + + +D GLA+L+   +     G +    +  PE       T+K DV+SF
Sbjct: 137 AANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 196
Query: 185 GVMLLEIIS 193
           G++L EI++
Sbjct: 197 GILLTEIVT 205

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 56  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVRCIG 115
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 116 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 174
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 175 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 233
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 234 EGIFTSKTDTWSFGVLLWEIFS 255

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 41  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 100
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 101 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 159
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 160 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 218
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 219 EGIFTSKTDTWSFGVLLWEIFS 240

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 56  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVRCIG 115
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 116 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 174
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 175 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 233
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 234 EGIFTSKTDTWSFGVLLWEIFS 255

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG---YLPPEWFRNMPVTVKVDVYSF 184
           +L+   +TV+  D GL++L    +  T    +   G   ++ PE  R+ P   K DVYSF
Sbjct: 170 LLVDKKYTVKVCDFGLSRL----KASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSF 225
Query: 185 GVMLLEIIS----------CRCVERQGSDPKTLEKPVMIAIQFVK-------EKPPLRPS 227
           GV+L E+ +           + V   G   K LE P  +  Q           +P  RPS
Sbjct: 226 GVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPS 285
Query: 228 LRIVALMLQSILEVPSPP 245
              +  +L+ +++   PP
Sbjct: 286 FATIMDLLRPLIKSAVPP 303

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 56  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 115
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 116 VSLQSLPRFILMELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 174
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 175 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 233
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 234 EGIFTSKTDTWSFGVLLWEIFS 255

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 42  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 101
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 102 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 160
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 161 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 219
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 220 EGIFTSKTDTWSFGVLLWEIFS 241

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 42  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVRCIG 101
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 102 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 160
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 161 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 219
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 220 EGIFTSKTDTWSFGVLLWEIFS 241

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+      + +D GLA+++  N+     G +    +  PE       T+K DV+SF
Sbjct: 312 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 371
Query: 185 GVMLLEIIS--------------CRCVERQGSDPKTL---EKPVMIAIQFVKEKPPLRPS 227
           G++L+EI++               R +ER    P+     E+   I ++  K +P  RP+
Sbjct: 372 GILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPT 431
Query: 228 LRIVALMLQSILE 240
              +    QS+L+
Sbjct: 432 FEYI----QSVLD 440

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 58  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 117
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 118 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 176
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 177 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 235
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 236 EGIFTSKTDTWSFGVLLWEIFS 257

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 48  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 107
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 108 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 166
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 167 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 225
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 226 EGIFTSKTDTWSFGVLLWEIFS 247

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 46  APGDKTNIGVKKLDKVVHVAHHKNLVCLLGY--H-------IEQECRLLVYKFMHNRSIS 96
           A  D+    + +L  + H+  H+N+V LLG   H        E  C   +  F+  ++ +
Sbjct: 88  AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA 147
Query: 97  SLLYECLRPTWQQRMQDCI---------------RDCWRTRALACRILLHDYFTVETSDL 141
            L  E  RP     ++D +               ++C      A  +LL +    +  D 
Sbjct: 148 DLDKEDGRPL---ELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDF 204
Query: 142 GLAKLLMINQTQTLTG-MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           GLA+ +M +    + G  R    ++ PE   +   TV+ DV+S+G++L EI S
Sbjct: 205 GLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 257

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 28/173 (16%)
Query: 46  APGDKTNIGVKKLDKVVHVAHHKNLVCLLGY--H-------IEQECRLLVYKFMHNRSIS 96
           A  D+    + +L  + H+  H+N+V LLG   H        E  C   +  F+  ++ +
Sbjct: 80  AHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEA 139
Query: 97  SLLYECLRPTWQQRMQDCI---------------RDCWRTRALACRILLHDYFTVETSDL 141
            L  E  RP     ++D +               ++C      A  +LL +    +  D 
Sbjct: 140 DLDKEDGRPL---ELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDF 196
Query: 142 GLAKLLMINQTQTLTG-MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           GLA+ +M +    + G  R    ++ PE   +   TV+ DV+S+G++L EI S
Sbjct: 197 GLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 249

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 68  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 127
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 128 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 186
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 187 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVK-WMPPEAFM 245
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 246 EGIFTSKTDTWSFGVLLWEIFS 267

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 42  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 101
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 102 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 160
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 161 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRASYYRKGGCAMLPVK-WMPPEAFM 219
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 220 EGIFTSKTDTWSFGVLLWEIFS 241

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 59  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 118
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 119 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 177
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 178 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVK-WMPPEAFM 236
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 237 EGIFTSKTDTWSFGVLLWEIFS 258

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           A  IL+      + +D GLA+++  N+     G +    +  PE       T+K DV+SF
Sbjct: 139 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 198
Query: 185 GVMLLEIISCRCVERQG-SDPKTL 207
           G++L+EI++   +   G S+P+ +
Sbjct: 199 GILLMEIVTYGRIPYPGMSNPEVI 222

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 35  GSFSTVYTGVLA--PGDKT--NIGVKKLDKV---------------VHVAHHKNLVCLLG 75
           G+F  VY G ++  P D +   + VK L +V               +   +H+N+V  +G
Sbjct: 82  GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 141
Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRD---CWRTRALACRILLHD 132
             ++   R ++ + M    + S L E  RP   Q     + D     R  A  C+ L  +
Sbjct: 142 VSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIACGCQYLEEN 200
Query: 133 YF-------------------TVETSDLGLAKLLMINQTQTLTG--MRETKGYLPPEWFR 171
           +F                     +  D G+A+ +         G  M   K ++PPE F 
Sbjct: 201 HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVK-WMPPEAFM 259
Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T K D +SFGV+L EI S
Sbjct: 260 EGIFTSKTDTWSFGVLLWEIFS 281

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 67  HKNLVCLLGYHIEQECRLLVY----------KFMHNRSISSLLYECLRPTWQ---QRMQD 113
           H NLV LLG  +E++  L +            ++ +R  S L  +CL        + M+ 
Sbjct: 64  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 123
Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
              + +  R LA R +L+ +    + SD GL K     Q    TG    K +  PE  R 
Sbjct: 124 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVK-WTAPEALRE 179
Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+SFG++L EI S
Sbjct: 180 AAFSTKSDVWSFGILLWEIYS 200

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 31  KPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYH 77
           K  GG +  VY GV      T + VK L +             V+    H NLV LLG  
Sbjct: 39  KLGGGQYGEVYVGVWKKYSLT-VAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 97
Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPT------------WQQRMQDCIRDCWRTRALA 125
             +    +V ++M   ++   L EC R                  M+   +  +  R LA
Sbjct: 98  TLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLEKKNFIHRDLA 157
Query: 126 CRI-LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV++F
Sbjct: 158 ARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAF 217
Query: 185 GVMLLEIIS 193
           GV+L EI +
Sbjct: 218 GVLLWEIAT 226

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW-----FRNMPV 175
           R LA R  +L + FTV+ +D GLA+ ++  +  ++   R  +  LP +W      +    
Sbjct: 148 RDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHAR--LPVKWTALESLQTYRF 205
Query: 176 TVKVDVYSFGVMLLEIISCRCVERQGSDP----------KTLEKP-------VMIAIQFV 218
           T K DV+SFGV+L E+++      +  DP          + L +P         +  Q  
Sbjct: 206 TTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCW 265
Query: 219 KEKPPLRPSLRIVALMLQSIL 239
           +  P +RP+ R++   ++ I+
Sbjct: 266 EADPAVRPTFRVLVGEVEQIV 286

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 67  HKNLVCLLGYHIEQECRLLVY----------KFMHNRSISSLLYECLRPTWQ---QRMQD 113
           H NLV LLG  +E++  L +            ++ +R  S L  +CL        + M+ 
Sbjct: 73  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 132
Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
              + +  R LA R +L+ +    + SD GL K     Q    TG    K +  PE  R 
Sbjct: 133 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVK-WTAPEALRE 188
Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+SFG++L EI S
Sbjct: 189 KKFSTKSDVWSFGILLWEIYS 209

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 24  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 83
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 84  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 143
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 144 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 200
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 201 GIVLYELMTGQ 211

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 21  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 80
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 81  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 140
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 141 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 197
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 198 GIVLYELMTGQ 208

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 30/142 (21%)
Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R IL+ + +  + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 163 RNLAARNILVGENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVY 215
Query: 176 TVKVDVYSFGVMLLEIISC--------RCVERQGSDPKT--LEKPVM-------IAIQFV 218
           T   DV+S+GV+L EI+S          C E     P+   LEKP+        +  Q  
Sbjct: 216 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCW 275
Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +EKP  RPS   + + L  +LE
Sbjct: 276 REKPYERPSFAQILVSLNRMLE 297

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 78
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 79  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 138
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 139 EDLTVKIGDFGLATEKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 195
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 196 GIVLYELMTGQ 206

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 30/142 (21%)
Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R IL+ + +  + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 166 RDLAARNILVGENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVY 218
Query: 176 TVKVDVYSFGVMLLEIISC--------RCVERQGSDPKT--LEKPVM-------IAIQFV 218
           T   DV+S+GV+L EI+S          C E     P+   LEKP+        +  Q  
Sbjct: 219 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCW 278
Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +EKP  RPS   + + L  +LE
Sbjct: 279 REKPYERPSFAQILVSLNRMLE 300

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 78
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 79  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 138
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 139 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 195
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 196 GIVLYELMTGQ 206

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 24  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 83
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 84  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 143
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 144 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 200
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 201 GIVLYELMTGQ 211

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 30/142 (21%)
Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR----NMPV- 175
           R LA R IL+ + +  + +D GL++   +        +++T G LP  W      N  V 
Sbjct: 156 RDLAARNILVGENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVY 208
Query: 176 TVKVDVYSFGVMLLEIISC--------RCVERQGSDPKT--LEKPVM-------IAIQFV 218
           T   DV+S+GV+L EI+S          C E     P+   LEKP+        +  Q  
Sbjct: 209 TTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCW 268
Query: 219 KEKPPLRPSLRIVALMLQSILE 240
           +EKP  RPS   + + L  +LE
Sbjct: 269 REKPYERPSFAQILVSLNRMLE 290

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 67  HKNLVCLLGYHIEQECRLLVY----------KFMHNRSISSLLYECLRPTWQ---QRMQD 113
           H NLV LLG  +E++  L +            ++ +R  S L  +CL        + M+ 
Sbjct: 245 HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 304
Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
              + +  R LA R +L+ +    + SD GL K     Q    TG    K +  PE  R 
Sbjct: 305 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVK-WTAPEALRE 360
Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+SFG++L EI S
Sbjct: 361 KKFSTKSDVWSFGILLWEIYS 381

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 67  HKNLVCLLGYHIEQECRLLVY----------KFMHNRSISSLLYECLRPTWQ---QRMQD 113
           H NLV LLG  +E++  L +            ++ +R  S L  +CL        + M+ 
Sbjct: 58  HSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY 117
Query: 114 CIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
              + +  R LA R +L+ +    + SD GL K     Q    TG    K +  PE  R 
Sbjct: 118 LEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD---TGKLPVK-WTAPEALRE 173
Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + K DV+SFG++L EI S
Sbjct: 174 KKFSTKSDVWSFGILLWEIYS 194

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 39  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 98
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 99  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 158
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 159 EDLTVKIGDFGLATEKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 215
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 216 GIVLYELMTGQ 226

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 46  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 105
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 106 AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 165
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 166 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 222
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 223 GIVLYELMTGQ 233

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 47  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 106
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 107 AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 166
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 167 EDLTVKIGDFGLATEKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 223
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 224 GIVLYELMTGQ 234

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 47  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 106
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 107 AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 166
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 167 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 223
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 224 GIVLYELMTGQ 234

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY    + 
Sbjct: 19  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQL 78
Query: 83  RLLVY-----KFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ILLH 131
            ++          H+  I    +E ++     R      D    +++  R      I LH
Sbjct: 79  AIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH 138
Query: 132 DYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSF 184
           +  TV+  D GLA    +    +Q + L+G   +  ++ PE  R     P + + DVY+F
Sbjct: 139 EDLTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDKNPYSFQSDVYAF 195
Query: 185 GVMLLEIISCR 195
           G++L E+++ +
Sbjct: 196 GIVLYELMTGQ 206

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 35  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 94
Query: 83  RLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT-----------RAL-ACRILL 130
             +V ++    S+   L+        +++ D  R   R            R L +  I L
Sbjct: 95  -AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL 153
Query: 131 HDYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYS 183
           H+  TV+  D GLA    +    +Q + L+G   +  ++ PE  R   + P + + DVY+
Sbjct: 154 HEDNTVKIGDFGLATEKSRWSGSHQFEQLSG---SILWMAPEVIRMQDSNPYSFQSDVYA 210
Query: 184 FGVMLLEIISCR 195
           FG++L E+++ +
Sbjct: 211 FGIVLYELMTGQ 222

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 35  GSFSTVYTG------------VLAPGDKTNIGVKKLDKVVHVAHHKNLVCLLGYHIEQEC 82
           GSF TVY G            V AP  +     K    V+    H N++  +GY  + + 
Sbjct: 23  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKPQL 82
Query: 83  RLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT-----------RAL-ACRILL 130
             +V ++    S+   L+        +++ D  R   R            R L +  I L
Sbjct: 83  -AIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFL 141
Query: 131 HDYFTVETSDLGLA----KLLMINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYS 183
           H+  TV+  D GLA    +    +Q + L+G   +  ++ PE  R   + P + + DVY+
Sbjct: 142 HEDNTVKIGDFGLATVKSRWSGSHQFEQLSG---SILWMAPEVIRMQDSNPYSFQSDVYA 198
Query: 184 FGVMLLEIISCR 195
           FG++L E+++ +
Sbjct: 199 FGIVLYELMTGQ 210

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 28/191 (14%)
Query: 29  LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLG 75
           +KK   G F  V+ G     + T + VK L               ++    H  LV L  
Sbjct: 17  VKKLGAGQFGEVWMGYY--NNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYA 74
Query: 76  YHIEQECRLLVYKFMHNRSISSLLY-----ECLRPTW-------QQRMQDCIRDCWRTRA 123
              ++E   ++ +FM   S+   L      + L P          + M    R  +  R 
Sbjct: 75  VVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 134
Query: 124 L-ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVY 182
           L A  +L+ +    + +D GLA+++  N+     G +    +  PE       T+K +V+
Sbjct: 135 LRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVW 194
Query: 183 SFGVMLLEIIS 193
           SFG++L EI++
Sbjct: 195 SFGILLYEIVT 205

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 128 ILLHDYFTVETSDLGLAKLLMIN--QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           +L+   +TV+  D GL++L       ++   G  E   ++ PE  R+ P   K DVYSFG
Sbjct: 170 LLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPE---WMAPEVLRDEPSNEKSDVYSFG 226
Query: 186 VMLLEIIS----------CRCVERQGSDPKTLEKPVMIAIQFVK-------EKPPLRPSL 228
           V+L E+ +           + V   G   K LE P  +  Q           +P  RPS 
Sbjct: 227 VILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSF 286
Query: 229 RIVALMLQSILEVPSPP 245
             +  +L+ +++   PP
Sbjct: 287 ATIMDLLRPLIKSAVPP 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-38
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-36
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-32
3soc_A	322	Activin receptor type-2A; structural genomics cons	8e-19
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-17
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-15
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-14
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-13
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-13
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-12
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	8e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-11
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-10
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-10
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	6e-10
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	6e-10
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-09
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-09
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	6e-09
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	8e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-08
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-08
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	4e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	5e-08
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	7e-08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	8e-08
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	9e-08
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-07
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-07
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-07
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-07
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-07
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-07
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-07
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	4e-07
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-07
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-07
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-07
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-07
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	8e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-07
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	9e-07
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-06
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-06
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	4e-06
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	4e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-06
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	7e-06
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	9e-06
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-05
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-05
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	5e-05
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-05
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	5e-05
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  135 bits (341), Expect = 5e-38
 Identities = 64/200 (32%), Positives = 89/200 (44%), Gaps = 42/200 (21%)

Query: 33  CGGSFSTVYTGVLAPGDKTNIGVKKLDK----------VVHV-----AHHKNLVCLLGYH 77
            GG F  VY G LA  D T + VK+L +             V     A H+NL+ L G+ 
Sbjct: 40  RGG-FGKVYKGRLA--DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRP----TWQQRMQDCIRDCWRTRALA-----CR- 127
           +    RLLVY +M N S++S L E         W +R +  +      R LA     C  
Sbjct: 97  MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALG---SARGLAYLHDHCDP 153

Query: 128 -----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVT 176
                      ILL + F     D GLAKL+    T   T +R T G++ PE+      +
Sbjct: 154 KIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSS 213

Query: 177 VKVDVYSFGVMLLEIISCRC 196
            K DV+ +GVMLLE+I+ + 
Sbjct: 214 EKTDVFGYGVMLLELITGQR 233

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  130 bits (328), Expect = 3e-36
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 74/274 (27%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK---------VVHVA-----HHKNLVCLLGYHIEQ 80
           G F  VY GVL   D   + +K+               +       H +LV L+G+  E+
Sbjct: 50  GVFGKVYKGVLR--DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107

Query: 81  ECRLLVYKFMHNRSISSLLYECLRP----TWQQRMQDCI----------------RDCWR 120
              +L+YK+M N ++   LY    P    +W+QR++ CI                RD   
Sbjct: 108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKS 167

Query: 121 TRALACRILLHDYFTVETSDLGLAKL-LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                  ILL + F  + +D G++K    ++QT   T ++ T GY+ PE+F    +T K 
Sbjct: 168 IN-----ILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKS 222

Query: 180 DVYSFGVMLLEIISCR--------------------CVER-----------QGS-DPKTL 207
           DVYSFGV+L E++  R                                        P++L
Sbjct: 223 DVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESL 282

Query: 208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV 241
            K    A++ +      RPS+  V   L+  L +
Sbjct: 283 RKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  119 bits (301), Expect = 2e-32
 Identities = 71/277 (25%), Positives = 106/277 (38%), Gaps = 85/277 (30%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA------------------HHKNLVCLLGY 76
           G F  VY G +   + T + VKKL  +V +                    H+NLV LLG+
Sbjct: 42  GGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGF 98

Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRP---TWQQRMQ--------------DCI--RD 117
             + +   LVY +M N S+   L         +W  R +              +    RD
Sbjct: 99  SSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158

Query: 118 CWRTRAL-ACRILLHDYFTVETSDLGLAKLLMINQTQTLT----GMRETKGYLPPEWFRN 172
                 + +  ILL + FT + SD GLA+         +T    G   T  Y+ PE  R 
Sbjct: 159 ------IKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVG---TTAYMAPEALRG 209

Query: 173 MPVTVKVDVYSFGVMLLEIISCR------------------------CVER------QGS 202
             +T K D+YSFGV+LLEII+                           +E         +
Sbjct: 210 E-ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDA 268

Query: 203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL 239
           D  ++E    +A Q + EK   RP ++ V  +LQ + 
Sbjct: 269 DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 83.2 bits (206), Expect = 8e-19
 Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 57/218 (26%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK-----------VVHVA--HHKNLVCLLGYHIE-- 79
           G F  V+   L       + VK               V  +    H+N++  +G      
Sbjct: 35  GRFGCVWKAQL---LNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGT 91

Query: 80  --QECRLLVYKFMHNRSISSLLYECLR---PTWQQRMQDCI---------------RDCW 119
                  L+  F    S    L + L+    +W +                         
Sbjct: 92  SVDVDLWLITAFHEKGS----LSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDG 147

Query: 120 RTRALACR------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE--TKGYLPPEWFR 171
              A++ R      +LL +  T   +D GLA      ++   T   +  T+ Y+ PE   
Sbjct: 148 HKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT-HGQVGTRRYMAPEVLE 206

Query: 172 -----NMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP 204
                     +++D+Y+ G++L E+ S RC    G   
Sbjct: 207 GAINFQRDAFLRIDMYAMGLVLWELAS-RCTAADGPVD 243

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 55/228 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQEC 82
           G+F  V           ++ +K+++            + +   +H N+V L G  +   C
Sbjct: 19  GAFGVVCKAKW---RAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLNPVC 75

Query: 83  RLLVYKFMHNRSISSLLYECLRP---TWQQRMQDCIRDCWRTRALAC-----------R- 127
             LV ++    S+ ++L+        T    M  C+  C  ++ +A            R 
Sbjct: 76  --LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCL-QC--SQGVAYLHSMQPKALIHRD 130

Query: 128 -----ILLHDYFTVET-SDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDV 181
                +LL    TV    D G A     +    +T  + +  ++ PE F     + K DV
Sbjct: 131 LKPPNLLLVAGGTVLKICDFGTAC----DIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDV 186

Query: 182 YSFGVMLLEIISCRCVERQGSDP-KTLEKPVMIAIQFVKEKPPLRPSL 228
           +S+G++L E+I+ R        P   +  P    +  V      RP L
Sbjct: 187 FSWGIILWEVITRR-------KPFDEIGGPAFRIMWAVHNG--TRPPL 225

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 65/266 (24%)

Query: 35  GSFSTVYTG----------VLAPGDKTNIGVKKLDKVVHV---AHHKNLVCLLGYHIEQE 81
           GSF TV+            +L   D     V +  + V +     H N+V  +G   +  
Sbjct: 48  GSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP 107

Query: 82  CRLLVYKFMHNRSISSLLYECLRP---TWQQRMQDCI------------------RDCWR 120
              +V +++   S+  LL++         ++R+                      R+   
Sbjct: 108 NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRN--- 164

Query: 121 TRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
              L    +L+   +TV+  D GL++ L  +   +      T  ++ PE  R+ P   K 
Sbjct: 165 ---LKSPNLLVDKKYTVKVCDFGLSR-LKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKS 220

Query: 180 DVYSFGVMLLEIISCRC-------------VERQGSDPKTLEKPVMIAIQFVK------- 219
           DVYSFGV+L E+ + +              V  +    K LE P  +  Q          
Sbjct: 221 DVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKC---KRLEIPRNLNPQVAAIIEGCWT 277

Query: 220 EKPPLRPSLRIVALMLQSILEVPSPP 245
            +P  RPS   +  +L+ +++   PP
Sbjct: 278 NEPWKRPSFATIMDLLRPLIKSAVPP 303

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 51/264 (19%), Positives = 87/264 (32%), Gaps = 70/264 (26%)

Query: 35  GSFSTVYTG---------VLAPGDKTNIGVKKLDKVVHV---AHHKNLVCLLGYHIEQEC 82
           GSF TVY G         +L     T   ++     V V     H N++  +GY      
Sbjct: 35  GSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY-STAPQ 93

Query: 83  RLLVYKFMHNRSISSLLYECLRP-----TWQQRMQDCI----------------RDCWRT 121
             +V ++    S    LY  L         ++ +                    RD    
Sbjct: 94  LAIVTQWCEGSS----LYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRD---- 145

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRN---MPVT 176
             L    I LH+  TV+  D GLA      + +     +  +  ++ PE  R     P +
Sbjct: 146 --LKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYS 203

Query: 177 VKVDVYSFGVMLLEIISCRC--------------VERQGSDPKTLEKPVMIAIQFV---- 218
            + DVY+FG++L E+++ +               V R    P   +       +      
Sbjct: 204 FQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMA 263

Query: 219 ---KEKPPLRPSLRIVALMLQSIL 239
              K+K   RPS   +   ++ + 
Sbjct: 264 ECLKKKRDERPSFPRILAEIEELA 287

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 56/207 (27%)

Query: 35  GSFSTVYTG---------VLAPGDKTNIGVKKLDKVVHV---AHHKNLVCLLGYHIEQEC 82
           G F  VY G         ++         +K   + V       H+N+V  +G  +    
Sbjct: 44  GRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH 103

Query: 83  RLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCI----------------RDCWRT 121
             ++      R+    LY  +R         +  Q                   +D    
Sbjct: 104 LAIITSLCKGRT----LYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKD---- 155

Query: 122 RALACRILLHDYFTVETSDLGLAKL----LMINQTQTLTGMRETKGYLPPEWFRNM---- 173
             L  + + +D   V  +D GL  +        +   L        +L PE  R +    
Sbjct: 156 --LKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDT 213

Query: 174 -----PVTVKVDVYSFGVMLLEIISCR 195
                P +   DV++ G +  E+ +  
Sbjct: 214 EEDKLPFSKHSDVFALGTIWYELHARE 240

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 61/210 (29%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD---------------------KVVHVAHHKNLVCL 73
           G F  V+ G L   DK+ + +K L                       ++   +H N+V L
Sbjct: 30  GGFGLVHKGRLV-KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKL 88

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRP-TWQQRMQDCI----------------- 115
            G         +V +F+    +   L +   P  W  +++  +                 
Sbjct: 89  YGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIV 146

Query: 116 -RDCWRTRALACR-ILL-----HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE 168
            RD      L    I L     +     + +D GL++        +++G+     ++ PE
Sbjct: 147 HRD------LRSPNIFLQSLDENAPVCAKVADFGLSQQ----SVHSVSGLLGNFQWMAPE 196

Query: 169 WF--RNMPVTVKVDVYSFGVMLLEIISCRC 196
                    T K D YSF ++L  I++   
Sbjct: 197 TIGAEEESYTEKADTYSFAMILYTILTGEG 226

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 36/210 (17%), Positives = 62/210 (29%), Gaps = 65/210 (30%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGY 76
           G F  VY           + VK                     K+  +  H N++ L G 
Sbjct: 18  GGFGKVYRAFW---IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGV 74

Query: 77  HIEQECRLLVYKFMHNRSISSLLYECLRP---TWQQRMQDCI------------------ 115
            +++    LV +F         L   L          +   +                  
Sbjct: 75  CLKEPNLCLVMEFARGGP----LNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPII 130

Query: 116 -RDCWRTRALACR-ILLHDYF--------TVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
            RD      L    IL+             ++ +D GLA+        +  G      ++
Sbjct: 131 HRD------LKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAG---AYAWM 181

Query: 166 PPEWFRNMPVTVKVDVYSFGVMLLEIISCR 195
            PE  R    +   DV+S+GV+L E+++  
Sbjct: 182 APEVIRASMFSKGSDVWSYGVLLWELLTGE 211

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 44/255 (17%), Positives = 74/255 (29%), Gaps = 60/255 (23%)

Query: 8   LEADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------- 60
           +EA  S+          ++  L+    G +  VY G L   D+  + VK           
Sbjct: 1   MEAAASEPSL----DLDNLKLLELIGRGRYGAVYKGSL---DERPVAVKVFSFANRQNFI 53

Query: 61  ----VVHVA--HHKNLVCLLGYHIEQECR-----LLVYKFMHNRSISSLLYECLRPTWQQ 109
               +  V    H N+   +              LLV ++  N S+   L       W  
Sbjct: 54  NEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH-TSDWVS 112

Query: 110 RMQ--------------DCIRDCWRTRALACR------ILLHDYFTVETSDLGLAKLLMI 149
             +              +  R      A++ R      +L+ +  T   SD GL+  L  
Sbjct: 113 SCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTG 172

Query: 150 N-------QTQTLTGMRETKGYLPPEWFRN-------MPVTVKVDVYSFGVMLLEIISCR 195
           N       +         T  Y+ PE                +VD+Y+ G++  EI    
Sbjct: 173 NRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRC 232

Query: 196 CVERQGSDPKTLEKP 210
                G      +  
Sbjct: 233 TDLFPGESVPEYQMA 247

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 60/250 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKV-----------VHV---AHHKNLVCLLGYHIEQ 80
           G F            +  + +K+L +            V V     H N++  +G   + 
Sbjct: 21  GCFGQAIKVTHRETGEV-MVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD 79

Query: 81  ECRLLVYKFMHNRSISSLLYECLRP-TWQQRM---------------QDCI-RDCWRTRA 123
           +    + +++   ++  ++        W QR+                + I RD      
Sbjct: 80  KRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRD------ 133

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLM-------------INQTQTLTGMRETKGYLPPEW 169
           L     L+ +   V  +D GLA+L++                 +    +     ++ PE 
Sbjct: 134 LNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEM 193

Query: 170 FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPS-- 227
                   KVDV+SFG++L EII      R  +DP  L + +   +          P   
Sbjct: 194 INGRSYDEKVDVFSFGIVLCEIIG-----RVNADPDYLPRTMDFGLNVRGFLDRYCPPNC 248

Query: 228 -LRIVALMLQ 236
                 + ++
Sbjct: 249 PPSFFPITVR 258

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 56/218 (25%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQE 81
           G F  V+ G         + VK                    +  H+N++  +    +  
Sbjct: 53  GRFGEVWRGKW---RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN 109

Query: 82  CR----LLVYKFMHNRSISSLLYECLR---PTWQQRMQ---DCIR-------DCWRT--- 121
                  LV  +  + S    L++ L     T +  ++              +   T   
Sbjct: 110 GTWTQLWLVSDYHEHGS----LFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK 165

Query: 122 -----RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE---TKGYLPPE---- 168
                R L  + IL+    T   +DLGLA                   TK Y+ PE    
Sbjct: 166 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDD 225

Query: 169 --WFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP 204
               ++     + D+Y+ G++  EI   RC      + 
Sbjct: 226 SINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIHED 262

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 45/209 (21%)

Query: 23  FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAH 66
           F  +  L K        ++ G        +I VK L                   + +  
Sbjct: 9   FKQLNFLTKLNENHSGELWKGRW---QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFS 65

Query: 67  HKNLVCLLGYHIEQECRLL--VYKFMHNRSISSLLYE--CLRPTWQQRMQ---------D 113
           H N++ +LG            +  +M   S+ ++L+E         Q ++          
Sbjct: 66  HPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMA 125

Query: 114 CIRDCWRT---RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW 169
            +          AL  R +++ +  T   S   +        +    G      ++ PE 
Sbjct: 126 FLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKF------SFQSPGRMYAPAWVAPEA 179

Query: 170 FRNMP---VTVKVDVYSFGVMLLEIISCR 195
            +  P        D++SF V+L E+++  
Sbjct: 180 LQKKPEDTNRRSADMWSFAVLLWELVTRE 208

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 128 ILLHDYFTVETSDLGLAKLLM---INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           IL+    T++  D G+AK L    + QT  + G   T  Y  PE  +        D+YS 
Sbjct: 142 ILIDSNKTLKIFDFGIAKALSETSLTQTNHVLG---TVQYFSPEQAKGEATDECTDIYSI 198

Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPS 227
           G++L E++        G  P   E  V IAI+ +++  P   +
Sbjct: 199 GIVLYEMLV-------GEPPFNGETAVSIAIKHIQDSVPNVTT 234

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 56/218 (25%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKV--------VHVA-----HHKNLVCLLGYHIEQE 81
           G +  V+ G         + VK               +       H+N++  +   I+  
Sbjct: 48  GRYGEVWMGKW---RGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGT 104

Query: 82  CR----LLVYKFMHNRSISSLLYECLR---PTWQQRMQ-------------DCIRDCWRT 121
                  L+  +  N S    LY+ L+      +  ++               I      
Sbjct: 105 GSWTQLYLITDYHENGS----LYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGK 160

Query: 122 RALACR------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE---TKGYLPPE---- 168
            A+A R      IL+    T   +DLGLA   + +  +          TK Y+PPE    
Sbjct: 161 PAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDE 220

Query: 169 --WFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP 204
                +    +  D+YSFG++L E+   RCV     + 
Sbjct: 221 SLNRNHFQSYIMADMYSFGLILWEVAR-RCVSGGIVEE 257

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 56/218 (25%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQE 81
           G +  V+ G        N+ VK                    +  H+N++  +   +   
Sbjct: 19  GRYGEVWRGSW---QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSR 75

Query: 82  CR----LLVYKFMHNRSISSLLYECLR---PTWQQRMQ---DCIR----------DCWRT 121
                  L+  +    S    LY+ L+         ++                      
Sbjct: 76  HSSTQLWLITHYHEMGS----LYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK 131

Query: 122 RALACR------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE---TKGYLPPEWFRN 172
            A+A R      IL+        +DLGLA +   +  Q   G      TK Y+ PE    
Sbjct: 132 PAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDE 191

Query: 173 MPVTV------KVDVYSFGVMLLEIISCRCVERQGSDP 204
                      +VD+++FG++L E+   R V     + 
Sbjct: 192 TIQVDCFDSYKRVDIWAFGLVLWEVA-RRMVSNGIVED 228

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 41/192 (21%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA--------------HHKNLVCLLGYHIEQ 80
           G +  VY GV        + VK L K   +                H NLV LLG    +
Sbjct: 231 GQYGEVYEGVW-KKYSLTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE 288

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQR------------M-----QDCI-RDCWRTR 122
               ++ +FM   ++   L EC R                  M     ++ I R+     
Sbjct: 289 PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRN----- 343

Query: 123 ALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDV 181
            LA R  L+ +   V+ +D GL++L+  +      G +    +  PE       ++K DV
Sbjct: 344 -LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 402

Query: 182 YSFGVMLLEIIS 193
           ++FGV+L EI +
Sbjct: 403 WAFGVLLWEIAT 414

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 55.7 bits (135), Expect = 4e-09
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 49/197 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE 79
           G+F  V++G L   D T + VK                  +++    H N+V L+G   +
Sbjct: 125 GNFGEVFSGRL-RADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQ 183

Query: 80  QECRLLVYKFMHNRSISSLL-YECLRPTWQQRM---------------QDCI-RDCWRTR 122
           ++   +V + +      + L  E  R   +  +               + CI RD     
Sbjct: 184 KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRD----- 238

Query: 123 ALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVT 176
            LA R  L+ +   ++ SD G+++                   +P     PE       +
Sbjct: 239 -LAARNCLVTEKNVLKISDFGMSREEADGVYAA----SGGLRQVPVKWTAPEALNYGRYS 293

Query: 177 VKVDVYSFGVMLLEIIS 193
            + DV+SFG++L E  S
Sbjct: 294 SESDVWSFGILLWETFS 310

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 53/208 (25%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHK 68
              K  G G+F TVY G+  P     K  + +K+L                 V+    + 
Sbjct: 18  KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNP 77

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI------------ 115
           ++  LLG         L+ + M    +   +         Q  +  C+            
Sbjct: 78  HVCRLLGI-CLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR 136

Query: 116 ----RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP---- 166
               RD      LA R +L+     V+ +D GLAKLL   + +         G +P    
Sbjct: 137 RLVHRD------LAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWM 186

Query: 167 -PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
             E   +   T + DV+S+GV + E+++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMT 214

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 16/105 (15%)

Query: 128 ILLHDYFTVETSDLGLAKLL-----MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVY 182
           I++     V+  D G+A+ +      + QT  + G   T  YL PE  R   V  + DVY
Sbjct: 147 IMISATNAVKVMDFGIARAIADSGNSVTQTAAVIG---TAQYLSPEQARGDSVDARSDVY 203

Query: 183 SFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPS 227
           S G +L E+++       G  P T + PV +A Q V+E P   PS
Sbjct: 204 SLGCVLYEVLT-------GEPPFTGDSPVSVAYQHVREDPI-PPS 240

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 47/217 (21%)

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR------------M-- 111
            H+ LV L    + +E   +V ++M   S+   L        +              M  
Sbjct: 237 RHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 295

Query: 112 ---QDCI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP 166
               + + RD      L    IL+ +    + +D GLA+L+  N+     G +    +  
Sbjct: 296 VERMNYVHRD------LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 349

Query: 167 PEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKT----------LEKP------ 210
           PE       T+K DV+SFG++L E+ +   V   G   +           +  P      
Sbjct: 350 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPES 409

Query: 211 ---VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
              +M   Q  +++P  RP+   +   L+       P
Sbjct: 410 LHDLM--CQCWRKEPEERPTFEYLQAFLEDYFTSTEP 444

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 47/217 (21%)

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR------------M-- 111
            H+ LV L    + +E   +V ++M   S+   L        +              M  
Sbjct: 320 RHEKLVQLYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 378

Query: 112 ---QDCI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP 166
               + + RD      L    IL+ +    + +D GLA+L+  N+     G +    +  
Sbjct: 379 VERMNYVHRD------LRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTA 432

Query: 167 PEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKT----------LEKP------ 210
           PE       T+K DV+SFG++L E+ +   V   G   +           +  P      
Sbjct: 433 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPES 492

Query: 211 ---VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP 244
              +M   Q  +++P  RP+   +   L+       P
Sbjct: 493 LHDLM--CQCWRKEPEERPTFEYLQAFLEDYFTSTEP 527

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 47/216 (21%)

Query: 24  SHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIG----VKKLDK--------------VVHV 64
           S +  +    G G+F+ VY       +         +K                   +  
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 65  AHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRAL 124
           +     +     H+ Q   +LV +     ++ + +        +   Q  +         
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY 183

Query: 125 ACR----------------ILLHDYFTVETS-----------DLGLAK-LLMINQTQTLT 156
                               +L + F  +             DLG +  + +  +    T
Sbjct: 184 MIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFT 243

Query: 157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEII 192
              ET G+   E   N P   ++D +     +  ++
Sbjct: 244 AKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCML 279

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 57/218 (26%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKL-------DKV---------VHVAH 66
              K  G G+F  V      G+        + VK L       +K           H+  
Sbjct: 49  QFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQ 108

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT----- 121
           H+N+V LLG        L++ ++     + + L        +      I +   +     
Sbjct: 109 HENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRK-SRVLETDPAFAIANSTASTRDLL 167

Query: 122 --------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE 160
                               R +A R +LL +    +  D GLA+ +M +         +
Sbjct: 168 HFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYI----VK 223

Query: 161 TKGYLP-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
               LP     PE   +   TV+ DV+S+G++L EI S
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 65/224 (29%)

Query: 28  SLKKPCG-GSFSTVYTGVL------APGDKTNIGVKKLDKVV----------------HV 64
            L KP G G+F  V            P   T + VK L                     +
Sbjct: 72  VLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMI 131

Query: 65  AHHKNLVCLLGYHIEQECRLLVYKFMHN------------RSISSLLYECLRPTWQQRMQ 112
             HKN++ LLG   +     ++ ++                 +         P  Q   +
Sbjct: 132 GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSK 191

Query: 113 DCIRDCWRT--------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
           D +   ++               R LA R +L+ +   ++ +D GLA+ +          
Sbjct: 192 DLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYK--- 248

Query: 158 MRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
            + T G LP +W   M          T + DV+SFGV+L EI +
Sbjct: 249 -KTTNGRLPVKW---MAPEALFDRIYTHQSDVWSFGVLLWEIFT 288

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 49/198 (24%)

Query: 35  GSFSTVYTGVL-APGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYH 77
           G+F TV  G          + VK L                  V+    +  +V ++G  
Sbjct: 28  GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGI- 86

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI----------------RDCWRT 121
            E E  +LV +      ++  L +      +  ++                   RD    
Sbjct: 87  CEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRD---- 142

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPV 175
             LA R +LL      + SD GL+K L  ++        +T G  P     PE       
Sbjct: 143 --LAARNVLLVTQHYAKISDFGLSKALRADENYYKA---QTHGKWPVKWYAPECINYYKF 197

Query: 176 TVKVDVYSFGVMLLEIIS 193
           + K DV+SFGV++ E  S
Sbjct: 198 SSKSDVWSFGVLMWEAFS 215

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 47/225 (20%), Positives = 77/225 (34%), Gaps = 67/225 (29%)

Query: 28  SLKKPCG-GSFSTVYTGVL------APGDKTNIGVKKL-------DKV---------VHV 64
           +L KP G G+F  V            P +   + VK L       D             +
Sbjct: 38  TLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMI 97

Query: 65  AHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT--- 121
             HKN++ LLG   +     ++ ++    ++   L    RP   +   D  R        
Sbjct: 98  GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR-RPPGMEYSYDINRVPEEQMTF 156

Query: 122 ------------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLT 156
                                   R LA R +L+ +   ++ +D GLA+ +         
Sbjct: 157 KDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK-- 214

Query: 157 GMRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
             + T G LP +W   M          T + DV+SFGV++ EI +
Sbjct: 215 --KTTNGRLPVKW---MAPEALFDRVYTHQSDVWSFGVLMWEIFT 254

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%)

Query: 35  GSFSTVYTGVL-APGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHI 78
           G+F +V  GV      + ++ +K L                +++H   +  +V L+G   
Sbjct: 21  GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV-C 79

Query: 79  EQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCWRT 121
           + E  +LV +      +   L+ +          +                   RD    
Sbjct: 80  QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRD---- 135

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPV 175
             LA R +LL +    + SD GL+K L  + +        + G  P     PE       
Sbjct: 136 --LAARNVLLVNRHYAKISDFGLSKALGADDSYYTA---RSAGKWPLKWYAPECINFRKF 190

Query: 176 TVKVDVYSFGVMLLEIIS 193
           + + DV+S+GV + E +S
Sbjct: 191 SSRSDVWSYGVTMWEALS 208

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 53/208 (25%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHK 68
              K  G G+F TVY G+  P     K  + +K+L                 V+    + 
Sbjct: 18  KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNP 77

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI------------ 115
           ++  LLG         L+ + M    +   +         Q  +  C+            
Sbjct: 78  HVCRLLGI-CLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR 136

Query: 116 ----RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP---- 166
               RD      LA R +L+     V+ +D GLAKLL   + +         G +P    
Sbjct: 137 RLVHRD------LAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA----EGGKVPIKWM 186

Query: 167 -PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
             E   +   T + DV+S+GV + E+++
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMT 214

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 51.9 bits (124), Expect = 9e-08
 Identities = 39/199 (19%), Positives = 71/199 (35%), Gaps = 49/199 (24%)

Query: 34  GGSFSTVYTGVLAPGDK-TNIGVKKLD---------------KVVHVAHHKNLVCLLGYH 77
            G+F +V  GV     K  ++ +K L                +++H   +  +V L+G  
Sbjct: 346 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV- 404

Query: 78  IEQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCWR 120
            + E  +LV +      +   L+ +          +                   R+   
Sbjct: 405 CQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRN--- 461

Query: 121 TRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMP 174
              LA R +LL +    + SD GL+K L  + +        + G  P     PE      
Sbjct: 462 ---LAARNVLLVNRHYAKISDFGLSKALGADDSYYTA---RSAGKWPLKWYAPECINFRK 515

Query: 175 VTVKVDVYSFGVMLLEIIS 193
            + + DV+S+GV + E +S
Sbjct: 516 FSSRSDVWSYGVTMWEALS 534

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 50/203 (24%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCL 73
           +L K  G G F  V  G      + ++ VK +              + +    H  LV  
Sbjct: 11  TLLKELGSGQFGVVKLGKW--KGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKF 68

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYE---CLRPTWQQRM-------------QDCI-R 116
            G   ++    +V +++ N  + + L      L P+    M                I R
Sbjct: 69  YGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHR 128

Query: 117 DCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWF 170
           D      LA R  L+     V+ SD G+ + ++ +Q  +  G +      P     PE F
Sbjct: 129 D------LAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTK-----FPVKWSAPEVF 177

Query: 171 RNMPVTVKVDVYSFGVMLLEIIS 193
                + K DV++FG+++ E+ S
Sbjct: 178 HYFKYSSKSDVWAFGILMWEVFS 200

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 128 ILLHDYFTVETSDLGLAKLL---MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           IL+         D G+A       + Q     G   T  Y+ PE F     T + D+Y+ 
Sbjct: 165 ILVSADDFAYLVDFGIASATTDEKLTQLGNTVG---TLYYMAPERFSESHATYRADIYAL 221

Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPS 227
             +L E ++       GS P   +  + +    + +  P RPS
Sbjct: 222 TCVLYECLT-------GSPPYQGD-QLSVMGAHINQAIP-RPS 255

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 49/200 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLDKVVHVA---------------HHKNLVCLLGYH 77
           G F  VY G      +  I    K L ++  +                +H N++ L+G  
Sbjct: 32  GHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIM 91

Query: 78  IEQECRLL-VYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCW 119
           +  E     +  +M +  +   +      PT +  +   +                RD  
Sbjct: 92  LPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRD-- 149

Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNM 173
               LA R  +L + FTV+ +D GLA+   I   +  +  +     LP      E  +  
Sbjct: 150 ----LAARNCMLDESFTVKVADFGLARD--ILDREYYSVQQHRHARLPVKWTALESLQTY 203

Query: 174 PVTVKVDVYSFGVMLLEIIS 193
             T K DV+SFGV+L E+++
Sbjct: 204 RFTTKSDVWSFGVLLWELLT 223

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 49/196 (25%)

Query: 34  GGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQ 80
            G F  V+ G     +K  + +K +              +V+    H  LV L G  +EQ
Sbjct: 18  SGQFGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 75

Query: 81  ECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RDCWRTRA 123
               LV +FM +  +S  L              M                I RD      
Sbjct: 76  APICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRD------ 129

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTV 177
           LA R  L+ +   ++ SD G+ + ++ +Q  + TG +      P     PE F     + 
Sbjct: 130 LAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTK-----FPVKWASPEVFSFSRYSS 184

Query: 178 KVDVYSFGVMLLEIIS 193
           K DV+SFGV++ E+ S
Sbjct: 185 KSDVWSFGVLMWEVFS 200

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 67/224 (29%)

Query: 29  LKKPCG-GSFSTVYTGVL------APGDKTNIGVKKLDKVV----------------HVA 65
           L KP G G F  V            P +   + VK L                     + 
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---- 121
            HKN++ LLG   +     ++ ++    ++   L    RP   +   D  R         
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRAR-RPPGMEYSYDINRVPEEQMTFK 203

Query: 122 -----------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                                  R LA R +L+ +   ++ +D GLA+ +          
Sbjct: 204 DLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK--- 260

Query: 158 MRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
            + T G LP +W   M          T + DV+SFGV++ EI +
Sbjct: 261 -KTTNGRLPVKW---MAPEALFDRVYTHQSDVWSFGVLMWEIFT 300

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 49/196 (25%)

Query: 34  GGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQ 80
            G F  V  G      + ++ +K +              KV+    H+ LV L G   +Q
Sbjct: 34  TGQFGVVKYGKW--RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ 91

Query: 81  ECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RDCWRTRA 123
               ++ ++M N  + + L E     +      M             +  + RD      
Sbjct: 92  RPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRD------ 145

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTV 177
           LA R  L++D   V+ SD GL++ ++ ++  +  G +      P     PE       + 
Sbjct: 146 LAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSK-----FPVRWSPPEVLMYSKFSS 200

Query: 178 KVDVYSFGVMLLEIIS 193
           K D+++FGV++ EI S
Sbjct: 201 KSDIWAFGVLMWEIYS 216

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 49/204 (24%), Positives = 78/204 (38%), Gaps = 50/204 (24%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCL 73
           ++K   G G +  VY GV        + VK L               V+    H NLV L
Sbjct: 16  TMKHKLGGGQYGEVYEGVW-KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQL 74

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRM-----------------QDCI- 115
           LG    +    ++ +FM   ++   L EC R      +                 ++ I 
Sbjct: 75  LGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIH 134

Query: 116 RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEW 169
           RD      LA R  L+ +   V+ +D GL++L+  +      G +      P     PE 
Sbjct: 135 RD------LAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK-----FPIKWTAPES 183

Query: 170 FRNMPVTVKVDVYSFGVMLLEIIS 193
                 ++K DV++FGV+L EI +
Sbjct: 184 LAYNKFSIKSDVWAFGVLLWEIAT 207

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 42/196 (21%), Positives = 69/196 (35%), Gaps = 51/196 (26%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQE 81
           G F  V+         T + VK +               V+    H  LV L    + +E
Sbjct: 199 GQFGEVWMATY--NKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAV-VTKE 255

Query: 82  CRLLVYKFMHNRSISSLLYECLRPTWQQR------------M-----QDCI-RDCWRTRA 123
              ++ +FM   S+   L                       M     ++ I RD      
Sbjct: 256 PIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD------ 309

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTV 177
           L    IL+      + +D GLA+++  N+     G +      P     PE       T+
Sbjct: 310 LRAANILVSASLVCKIADFGLARVIEDNEYTAREGAK-----FPIKWTAPEAINFGSFTI 364

Query: 178 KVDVYSFGVMLLEIIS 193
           K DV+SFG++L+EI++
Sbjct: 365 KSDVWSFGILLMEIVT 380

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 43/204 (21%), Positives = 65/204 (31%), Gaps = 58/204 (28%)

Query: 35  GSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLG- 75
           G F  V      P   G    + VK L                 ++   +H++++   G 
Sbjct: 42  GHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGC 101

Query: 76  -YHIEQECRLLVYKFMHNRSISSLLYECLR---PTWQQRM---------------QDCI- 115
                     LV +++   S    L + L        Q +               Q  I 
Sbjct: 102 CEDAGAASLQLVMEYVPLGS----LRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIH 157

Query: 116 RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEW 169
           RD      LA R +LL +   V+  D GLAK +               G  P     PE 
Sbjct: 158 RD------LAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV---REDGDSPVFWYAPEC 208

Query: 170 FRNMPVTVKVDVYSFGVMLLEIIS 193
            +        DV+SFGV L E+++
Sbjct: 209 LKEYKFYYASDVWSFGVTLYELLT 232

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPV 175
           R LA R ILL +   V+  D GLA+ +  +        R+    LP     PE   +   
Sbjct: 217 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYV----RKGDARLPLKWMAPETIFDRVY 272

Query: 176 TVKVDVYSFGVMLLEIIS 193
           T++ DV+SFGV+L EI S
Sbjct: 273 TIQSDVWSFGVLLWEIFS 290

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 49/222 (22%), Positives = 74/222 (33%), Gaps = 72/222 (32%)

Query: 29  LKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA---------------------- 65
           + +  G GSF  VY GV         GV K +    VA                      
Sbjct: 29  MSRELGQGSFGMVYEGVA-------KGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 81

Query: 66  ----HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR-------MQDC 114
               +  ++V LLG   + +  L++ + M    + S L    RP            +   
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL-RPAMANNPVLAPPSLSKM 140

Query: 115 IRDCWRT--------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMR 159
           I+                   R LA R  ++ + FTV+  D G+ + +           +
Sbjct: 141 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYR----K 196

Query: 160 ETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
             KG LP  W   M          T   DV+SFGV+L EI +
Sbjct: 197 GGKGLLPVRW---MSPESLKDGVFTTYSDVWSFGVVLWEIAT 235

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 37/193 (19%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLD---------------KVVHVAHHKNLVCLLGYH 77
           G F  V +G L    K  I V  K L                 ++    H N++ L G  
Sbjct: 56  GEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVV 115

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWR-----------TRALAC 126
            + +  ++V ++M N S+ S L +        ++   +R                R LA 
Sbjct: 116 TKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAA 175

Query: 127 R-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTVKVD 180
           R IL++     + SD GL ++L  +     T      G +P     PE       T   D
Sbjct: 176 RNILINSNLVCKVSDFGLGRVLEDDPEAAYT---TRGGKIPIRWTSPEAIAYRKFTSASD 232

Query: 181 VYSFGVMLLEIIS 193
           V+S+G++L E++S
Sbjct: 233 VWSYGIVLWEVMS 245

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 44/213 (20%), Positives = 69/213 (32%), Gaps = 52/213 (24%)

Query: 28  SLKKPCG-GSFSTVYTGVL--APGDKTNIGVKKLDKVVHVA----------------HHK 68
            L K  G G F +V  G L    G    + VK +                        H 
Sbjct: 37  ILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHP 96

Query: 69  NLVCLLG-----YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR---MQDCIRDCWR 120
           N++ LLG             +++  FM    + + L    R     +   +Q  ++    
Sbjct: 97  NVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYS-RLETGPKHIPLQTLLKFMVD 155

Query: 121 T--------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                          R LA R  +L D  TV  +D GL+K +           +     +
Sbjct: 156 IALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYR----QGRIAKM 211

Query: 166 P-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           P      E   +   T K DV++FGV + EI +
Sbjct: 212 PVKWIAIESLADRVYTSKSDVWAFGVTMWEIAT 244

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 49/200 (24%)

Query: 35  GSFSTVYTGVL--APGDKTNIGVKKLDKVVHVA---------------HHKNLVCLLGYH 77
           G F  VY G L    G K +  VK L+++  +                 H N++ LLG  
Sbjct: 100 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC 159

Query: 78  IEQEC-RLLVYKFMHNRSISSLLYEC-LRPTWQQRMQDCI----------------RDCW 119
           +  E   L+V  +M +  + + +      PT +  +   +                RD  
Sbjct: 160 LRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD-- 217

Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNM 173
               LA R  +L + FTV+ +D GLA+   +   +  +   +T   LP      E  +  
Sbjct: 218 ----LAARNCMLDEKFTVKVADFGLARD--MYDKEFDSVHNKTGAKLPVKWMALESLQTQ 271

Query: 174 PVTVKVDVYSFGVMLLEIIS 193
             T K DV+SFGV+L E+++
Sbjct: 272 KFTTKSDVWSFGVLLWELMT 291

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 45/231 (19%), Positives = 74/231 (32%), Gaps = 79/231 (34%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKL-------DKV---------VHVAH 66
           S  K  G G+F  V      G++       + VK L       ++           ++ +
Sbjct: 26  SFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGN 85

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQD------------- 113
           H N+V LLG        L++ ++     + + L    R ++                   
Sbjct: 86  HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK-RDSFICSKTSPAIMEDDELALDL 144

Query: 114 ---------------------CI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMIN 150
                                CI RD      LA R ILL      +  D GLA+ +  +
Sbjct: 145 EDLLSFSYQVAKGMAFLASKNCIHRD------LAARNILLTHGRITKICDFGLARDIKND 198

Query: 151 QTQTLTGMRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
                    +    LP +W   M          T + DV+S+G+ L E+ S
Sbjct: 199 SNYV----VKGNARLPVKW---MAPESIFNCVYTFESDVWSYGIFLWELFS 242

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 43/202 (21%)

Query: 28  SLKKPCG-GSFSTVYTGVLAPGDKTNIGV-----------KKLDKVVHVA------HHKN 69
            L +  G G F  V+ G+    +   + V              +K +  A       H +
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH 452

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYEC-LRPTWQQRMQDCI------------- 115
           +V L+G  I +    ++ +      + S L            +                 
Sbjct: 453 IVKLIGV-ITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKR 511

Query: 116 ---RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR 171
              RD      +A R +L+     V+  D GL++ +  +     +  +    ++ PE   
Sbjct: 512 FVHRD------IAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESIN 565

Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
               T   DV+ FGV + EI+ 
Sbjct: 566 FRRFTSASDVWMFGVCMWEILM 587

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 64/212 (30%)

Query: 35  GSFSTVYTGVLA-PGDKTNIGVKKL-------DKV---------VHVAHHKNLVCLLGYH 77
           G+F  V    +   G + +  +K++       D             + HH N++ LLG  
Sbjct: 36  GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGAC 95

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---------------- 121
             +    L  ++  + ++   L +  R                T                
Sbjct: 96  EHRGYLYLAIEYAPHGNLLDFLRKS-RVLETDPAFAIANSTASTLSSQQLLHFAADVARG 154

Query: 122 -----------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW 169
                      R LA R IL+ + +  + +D GL++            +++T G LP  W
Sbjct: 155 MDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR-------GQEVYVKKTMGRLPVRW 207

Query: 170 FRNMPV--------TVKVDVYSFGVMLLEIIS 193
              M +        T   DV+S+GV+L EI+S
Sbjct: 208 ---MAIESLNYSVYTTNSDVWSYGVLLWEIVS 236

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 43/203 (21%), Positives = 66/203 (32%), Gaps = 60/203 (29%)

Query: 35  GSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYH 77
           G F  VY GV     G+K N+ VK                   ++    H ++V L+G  
Sbjct: 23  GFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGI- 81

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCI----------------R 116
           IE+E   ++ +          L   L            +   +                R
Sbjct: 82  IEEEPTWIIMELYPYGE----LGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHR 137

Query: 117 DCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWF 170
           D      +A R IL+     V+  D GL++ +        +  R     LP     PE  
Sbjct: 138 D------IAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTR-----LPIKWMSPESI 186

Query: 171 RNMPVTVKVDVYSFGVMLLEIIS 193
                T   DV+ F V + EI+S
Sbjct: 187 NFRRFTTASDVWMFAVCMWEILS 209

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 49/200 (24%)

Query: 35  GSFSTVYTGVL--APGDKTNIGVKKLDKVVHVA---------------HHKNLVCLLGYH 77
           G F  VY G L    G K +  VK L+++  +                 H N++ LLG  
Sbjct: 36  GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC 95

Query: 78  IEQEC-RLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCW 119
           +  E   L+V  +M +  + + +  E   PT +  +   +                RD  
Sbjct: 96  LRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD-- 153

Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNM 173
               LA R  +L + FTV+ +D GLA+   +   +  +   +T   LP      E  +  
Sbjct: 154 ----LAARNCMLDEKFTVKVADFGLARD--MYDKEYYSVHNKTGAKLPVKWMALESLQTQ 207

Query: 174 PVTVKVDVYSFGVMLLEIIS 193
             T K DV+SFGV+L E+++
Sbjct: 208 KFTTKSDVWSFGVLLWELMT 227

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 52/199 (26%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV------------KKLD-----KVVHVAHHKNLVCLLGYH 77
           G F  V+ G+    +   + V             +         +    H ++V L+G  
Sbjct: 26  GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGV- 84

Query: 78  IEQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCWR 120
           I +    ++ +      + S L            +                    RD   
Sbjct: 85  ITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRD--- 141

Query: 121 TRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMP 174
              +A R +L+     V+  D GL++ +  +     +  +     LP     PE      
Sbjct: 142 ---IAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGK-----LPIKWMAPESINFRR 193

Query: 175 VTVKVDVYSFGVMLLEIIS 193
            T   DV+ FGV + EI+ 
Sbjct: 194 FTSASDVWMFGVCMWEILM 212

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 52/200 (26%)

Query: 35  GSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGY 76
           G F TV+ GV  P     K  + +K ++                 +    H ++V LLG 
Sbjct: 24  GVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGL 83

Query: 77  HIEQECRLLVYKFMHNRSISS-LLYECLRPTWQQRMQDCI----------------RDCW 119
                   LV +++   S+   +         Q  +   +                R+  
Sbjct: 84  -CPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRN-- 140

Query: 120 RTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNM 173
               LA R +LL     V+ +D G+A LL  +  Q L     ++   P      E     
Sbjct: 141 ----LAARNVLLKSPSQVQVADFGVADLLPPDDKQLLY----SEAKTPIKWMALESIHFG 192

Query: 174 PVTVKVDVYSFGVMLLEIIS 193
             T + DV+S+GV + E+++
Sbjct: 193 KYTHQSDVWSYGVTVWELMT 212

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 49/199 (24%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLD---------------KVVHVAHHKNLVCLLGYH 77
           G    V  G L    + ++ V  K L                 ++    H N++ L G  
Sbjct: 60  GDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV 119

Query: 78  IEQECRLLVYKFMHNRSISSLLYE---CLRPTWQQRM-------------QDCI-RDCWR 120
                 ++V ++M N S+ + L              M                + RD   
Sbjct: 120 TRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRD--- 176

Query: 121 TRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMP 174
              LA R +L+      + SD GL+++L  +     T    T G +P     PE      
Sbjct: 177 ---LAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYT---TTGGKIPIRWTAPEAIAFRT 230

Query: 175 VTVKVDVYSFGVMLLEIIS 193
            +   DV+SFGV++ E+++
Sbjct: 231 FSSASDVWSFGVVMWEVLA 249

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 60/219 (27%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKLD--------------KVVHVAHHK 68
            LK   G G+F  V+      +L   DK  + VK L               +++ +  H+
Sbjct: 44  VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQ 103

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT------- 121
           ++V   G   E    L+V+++M +  ++  L             + +             
Sbjct: 104 HIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAV 163

Query: 122 ------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETK 162
                             R LA R  L+     V+  D G+++ +              +
Sbjct: 164 ASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYR----VGGR 219

Query: 163 GYLPPEWFRNMP--------VTVKVDVYSFGVMLLEIIS 193
             LP  W   MP         T + DV+SFGV+L EI +
Sbjct: 220 TMLPIRW---MPPESILYRKFTTESDVWSFGVVLWEIFT 255

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 42/221 (19%), Positives = 74/221 (33%), Gaps = 63/221 (28%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKLD--------------KVVHVAHHK 68
            LK+  G G+F  V+      +    DK  + VK L               +++    H+
Sbjct: 18  VLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHE 77

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT------- 121
           ++V   G   + +  ++V+++M +  ++  L     P     +    R            
Sbjct: 78  HIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAH-GPDAMILVDGQPRQAKGELGLSQML 136

Query: 122 --------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE 160
                               R LA R  L+     V+  D G+++ +             
Sbjct: 137 HIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYR----VG 192

Query: 161 TKGYLPPEWFRNMP--------VTVKVDVYSFGVMLLEIIS 193
               LP  W   MP         T + DV+SFGV+L EI +
Sbjct: 193 GHTMLPIRW---MPPESIMYRKFTTESDVWSFGVILWEIFT 230

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 43/215 (20%), Positives = 72/215 (33%), Gaps = 55/215 (25%)

Query: 28  SLKKPCG-GSFSTVYTGVL--APGDKTNIGVKKLDKVVHVA-----------------HH 67
           +L +  G G F +V    L    G    + VK L K   +A                  H
Sbjct: 26  TLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKML-KADIIASSDIEEFLREAACMKEFDH 84

Query: 68  KNLVCLLG------YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR---MQDCIRDC 118
            ++  L+G              +++  FM +  + + L    R         +Q  +R  
Sbjct: 85  PHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLAS-RIGENPFNLPLQTLVRFM 143

Query: 119 WRT--------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKG 163
                            R LA R  +L +  TV  +D GL++ +           +    
Sbjct: 144 VDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYR----QGCAS 199

Query: 164 YLP-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
            LP      E   +   TV  DV++FGV + EI++
Sbjct: 200 KLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMT 234

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 51/224 (22%), Positives = 78/224 (34%), Gaps = 66/224 (29%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKL-------DKV---------VHVAH 66
            L KP G G+F  V      G+        + VK L       +           +H+ H
Sbjct: 30  KLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 89

Query: 67  HKNLVCLLGYHIEQEC-RLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---- 121
           H N+V LLG   +     +++ +F    ++S+ L    R  +                  
Sbjct: 90  HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK-RNEFVPYKVAPEDLYKDFLTLE 148

Query: 122 -----------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                                  R LA R ILL +   V+  D GLA+ +  +       
Sbjct: 149 HLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV--- 205

Query: 158 MRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
            R+    LP +W   M          T++ DV+SFGV+L EI S
Sbjct: 206 -RKGDARLPLKW---MAPETIFDRVYTIQSDVWSFGVLLWEIFS 245

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 41/205 (20%), Positives = 61/205 (29%), Gaps = 60/205 (29%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLD-----------------KVVHVAHHKNLVCLLG 75
           GSF  V  G         + V  K L                    +H   H+NL+ L G
Sbjct: 29  GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYG 88

Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCI--------------- 115
             +      +V +     S    L + LR            +  +               
Sbjct: 89  V-VLTPPMKMVTELAPLGS----LLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFI 143

Query: 116 -RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PE 168
            RD      LA R +LL     V+  D GL + L  N    +         +P     PE
Sbjct: 144 HRD------LAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ---EHRKVPFAWCAPE 194

Query: 169 WFRNMPVTVKVDVYSFGVMLLEIIS 193
             +    +   D + FGV L E+ +
Sbjct: 195 SLKTRTFSHASDTWMFGVTLWEMFT 219

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 44/230 (19%), Positives = 73/230 (31%), Gaps = 72/230 (31%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKL-------DKV---------VHVAH 66
              K  G G+F  V      G+   G    + VK L       ++            +  
Sbjct: 48  EFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGS 107

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT----- 121
           H+N+V LLG         L++++     + + L    R  + +   +             
Sbjct: 108 HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK-REKFSEDEIEYENQKRLEEEEDL 166

Query: 122 -----------------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQ 151
                                        R LA R +L+     V+  D GLA+ +M + 
Sbjct: 167 NVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 226

Query: 152 TQTLTGMRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
                        LP +W   M          T+K DV+S+G++L EI S
Sbjct: 227 NYV----VRGNARLPVKW---MAPESLFEGIYTIKSDVWSYGILLWEIFS 269

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 52/213 (24%)

Query: 28  SLKKPCG-GSFSTVYTGVL----APGDKTNIGVKKLDK---------------VVHVAHH 67
           +L +  G G+F  VY G +           + VK L +               ++   +H
Sbjct: 33  TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNH 92

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----MQDCIRDCWRT-- 121
           +N+V  +G  ++   R ++ + M    + S L E  RP   Q     M D +        
Sbjct: 93  QNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIAC 151

Query: 122 ------------RALACR-ILLHDY---FTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                       R +A R  LL         +  D G+A+ +           +     L
Sbjct: 152 GCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYR----KGGCAML 207

Query: 166 P-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           P     PE F     T K D +SFGV+L EI S
Sbjct: 208 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 48/216 (22%), Positives = 75/216 (34%), Gaps = 58/216 (26%)

Query: 28  SLKKPCG-GSFSTVYTGVL----APGDKTNIGVKKLD---------------KVVHVAHH 67
           +L +  G G+F  VY G +           + VK L                 ++   +H
Sbjct: 74  TLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNH 133

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----MQDCIRDCWRT-- 121
           +N+V  +G  ++   R ++ + M    + S L E  RP   Q     M D +        
Sbjct: 134 QNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRET-RPRPSQPSSLAMLDLLHVARDIAC 192

Query: 122 ------------RALACR-ILLHDY---FTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                       R +A R  LL         +  D G+A+ +           +     L
Sbjct: 193 GCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYR----KGGCAML 248

Query: 166 PPEWFRNMP--------VTVKVDVYSFGVMLLEIIS 193
           P +W   MP         T K D +SFGV+L EI S
Sbjct: 249 PVKW---MPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 46/201 (22%), Positives = 77/201 (38%), Gaps = 51/201 (25%)

Query: 35  GSFSTVYTGVLAP-GDKTNIGV--KKLD--------------KVVHVAHHKNLVCLLG-- 75
           G+F +V      P GD T   V  K+L               +++   H   +V   G  
Sbjct: 34  GNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVS 93

Query: 76  YHIEQECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RDC 118
           Y   ++   LV +++ +  +   L      L  +                  + C+ RD 
Sbjct: 94  YGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRD- 152

Query: 119 WRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRN 172
                LA R IL+     V+ +D GLAKLL +++   +       G  P     PE   +
Sbjct: 153 -----LAARNILVESEAHVKIADFGLAKLLPLDKDYYVVR---EPGQSPIFWYAPESLSD 204

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              + + DV+SFGV+L E+ +
Sbjct: 205 NIFSRQSDVWSFGVVLYELFT 225

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 40/153 (26%)

Query: 66  HHKNLVCLLGYHIEQECRL-LVYKFMHNRSISSLLYECLRPTWQQR------------M- 111
            H NLV LLG  +E++  L +V ++M   S+   L    R                  M 
Sbjct: 244 RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAME 303

Query: 112 ----QDCI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                + + RD      LA R +L+ +    + SD GL K      + T    +     L
Sbjct: 304 YLEGNNFVHRD------LAARNVLVSEDNVAKVSDFGLTK----EASSTQDTGK-----L 348

Query: 166 P-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           P     PE  R    + K DV+SFG++L EI S
Sbjct: 349 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 381

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 51/201 (25%)

Query: 35  GSFSTVYTGVLAP-GDKTNIGV--KKLD--------------KVVHVAHHKNLVCLLG-- 75
           G+F +V      P  D T   V  KKL               +++    H N+V   G  
Sbjct: 21  GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVC 80

Query: 76  YHIEQECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RDC 118
           Y   +    L+ +++   S+   L +    +      +              +  I RD 
Sbjct: 81  YSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRD- 139

Query: 119 WRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRN 172
                LA R IL+ +   V+  D GL K+L  ++        +  G  P     PE    
Sbjct: 140 -----LATRNILVENENRVKIGDFGLTKVLPQDKEFF---KVKEPGESPIFWYAPESLTE 191

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              +V  DV+SFGV+L E+ +
Sbjct: 192 SKFSVASDVWSFGVVLYELFT 212

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 44/164 (26%)

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---- 121
            H N+VCLLG   + +   +++ +  +  +   L     P       D  R         
Sbjct: 70  QHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMR-SPHSDVGSTDDDRTVKSALEPP 128

Query: 122 -----------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                                  + LA R +L++D   V+ SDLGL + +       L G
Sbjct: 129 DFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLG 188

Query: 158 MRETKGYLPPEWFRNMP--------VTVKVDVYSFGVMLLEIIS 193
                  LP  W   M          ++  D++S+GV+L E+ S
Sbjct: 189 ----NSLLPIRW---MAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 51/196 (26%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQE 81
           G F  V+ G       T + VK L               ++    H+ LV L    + QE
Sbjct: 24  GQFGEVWMGYYN--GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAV-VTQE 80

Query: 82  CRLLVYKFMHNRSISSLLYECLRPTWQQRM-----------------QDCI-RDCWRTRA 123
              ++ ++M N S+   L                             ++ I RD      
Sbjct: 81  PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD------ 134

Query: 124 LACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRNMPVTV 177
           L    IL+ D  + + +D GLA+L+  N+     G +      P     PE       T+
Sbjct: 135 LRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK-----FPIKWTAPEAINYGTFTI 189

Query: 178 KVDVYSFGVMLLEIIS 193
           K DV+SFG++L EI++
Sbjct: 190 KSDVWSFGILLTEIVT 205

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 70/212 (33%)

Query: 35  GSFSTVYTGVL------APGDKTNIGVKKLDK--------------VVHVAHHKNLVCLL 74
           G+F+ ++ GV           +T + +K LDK              ++    HK+LV   
Sbjct: 19  GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNY 78

Query: 75  GYHIEQECRLLVYKFMHNRSISSLLYE---CLRPTWQQRM-------------QDCI-RD 117
           G  +  +  +LV +F+   S+ + L +   C+   W+  +                I  +
Sbjct: 79  GVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGN 138

Query: 118 CWRTRALACR-ILLHDYFTVET--------SDLGLAKLLMINQTQTLTGMRETKGY---- 164
                 +  + ILL      +T        SD G++  ++                    
Sbjct: 139 ------VCAKNILLIREEDRKTGNPPFIKLSDPGISITVL-----------PKDILQERI 181

Query: 165 --LPPEWFRNMPV-TVKVDVYSFGVMLLEIIS 193
             +PPE   N     +  D +SFG  L EI S
Sbjct: 182 PWVPPECIENPKNLNLATDKWSFGTTLWEICS 213

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 45/201 (22%), Positives = 72/201 (35%), Gaps = 51/201 (25%)

Query: 35  GSFSTVYTGVLAP-GDKTNIGV--KKLD--------------KVVHVAHHKNLVCLLG-- 75
           G+F +V      P  D T   V  KKL               +++    H N+V   G  
Sbjct: 52  GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVC 111

Query: 76  YHIEQECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RDC 118
           Y   +    L+ +++   S+   L +    +      +              +  I RD 
Sbjct: 112 YSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRD- 170

Query: 119 WRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFRN 172
                LA R IL+ +   V+  D GL K+L  ++           G  P     PE    
Sbjct: 171 -----LATRNILVENENRVKIGDFGLTKVLPQDKEYYKVK---EPGESPIFWYAPESLTE 222

Query: 173 MPVTVKVDVYSFGVMLLEIIS 193
              +V  DV+SFGV+L E+ +
Sbjct: 223 SKFSVASDVWSFGVVLYELFT 243

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           I L D   V+  D GL   L        T  + T  Y+ PE   +     +VD+Y+ G++
Sbjct: 153 IFLVDTKQVKIGDFGLVTSL--KNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLI 210

Query: 188 LLEIIS 193
           L E++ 
Sbjct: 211 LAELLH 216

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE-WFRNMPVTVKVDVYSFGV 186
           ILL ++  V  SDLGLA      +     G   T GY+ PE   + +      D +S G 
Sbjct: 323 ILLDEHGHVRISDLGLACDFSKKKPHASVG---THGYMAPEVLQKGVAYDSSADWFSLGC 379

Query: 187 MLLEII 192
           ML +++
Sbjct: 380 MLFKLL 385

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 38/202 (18%), Positives = 67/202 (33%), Gaps = 52/202 (25%)

Query: 35  GSFSTVYTGVLAP---GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLG- 75
           G F  V      P        + VK L                +++   +H+N+V   G 
Sbjct: 32  GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGI 91

Query: 76  -YHIEQECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QDCI-RD 117
                     L+ +F+ + S+   L +    +    Q +              +  + RD
Sbjct: 92  CTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRD 151

Query: 118 CWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP-----PEWFR 171
                 LA R +L+     V+  D GL K +  ++        +     P     PE   
Sbjct: 152 ------LAARNVLVESEHQVKIGDFGLTKAIETDKEYYTV---KDDRDSPVFWYAPECLM 202

Query: 172 NMPVTVKVDVYSFGVMLLEIIS 193
                +  DV+SFGV L E+++
Sbjct: 203 QSKFYIASDVWSFGVTLHELLT 224

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLM--INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           I L    TV+  D G+A++L   +   +   G   T  YL PE   N P   K D+++ G
Sbjct: 156 IFLTKDGTVQLGDFGIARVLNSTVELARACIG---TPYYLSPEICENKPYNNKSDIWALG 212

Query: 186 VMLLEIISCR 195
            +L E+ + +
Sbjct: 213 CVLYELCTLK 222

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 72/229 (31%)

Query: 29  LKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKLDKVVHVA---------------HHK 68
           L K  G G F  V       +      T + VK L +    +               +H 
Sbjct: 27  LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHP 86

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT------- 121
           +++ L G   +    LL+ ++    S+   L E  R      +         +       
Sbjct: 87  HVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRES-RKVGPGYLGSGGSRNSSSLDHPDER 145

Query: 122 ----------------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQT 152
                                       R LA R IL+ +   ++ SD GL++ +    +
Sbjct: 146 ALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDS 205

Query: 153 QTLTGMRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS 193
                 + ++G +P +W   M +        T + DV+SFGV+L EI++
Sbjct: 206 YV----KRSQGRIPVKW---MAIESLFDHIYTTQSDVWSFGVLLWEIVT 247

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 64/207 (30%)

Query: 35  GSFSTVYTGVL-APGDKTNIGV------------------------KKLDKVVHVAHHKN 69
           G F  VY G+L     K  + V                         +         H N
Sbjct: 55  GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS-------HHN 107

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYEC---LRPTWQQRM-------------QD 113
           ++ L G   + +  +++ ++M N ++   L E            M              +
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN 167

Query: 114 CI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP----- 166
            + RD      LA R IL++     + SD GL+++L  +   T T    + G +P     
Sbjct: 168 YVHRD------LAARNILVNSNLVCKVSDFGLSRVLEDDPEATYT---TSGGKIPIRWTA 218

Query: 167 PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           PE       T   DV+SFG+++ E+++
Sbjct: 219 PEAISYRKFTSASDVWSFGIVMWEVMT 245

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 52/304 (17%), Positives = 88/304 (28%), Gaps = 101/304 (33%)

Query: 28  SLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKLD---------------KVVHVAHH 67
              +  G G+F  V+     G+L     T + VK L                 ++    +
Sbjct: 50  EYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDN 109

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT------ 121
            N+V LLG     +   L++++M    ++  L     P     +                
Sbjct: 110 PNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSM-SPHTVCSLSHSDLSTRARVSSPGP 168

Query: 122 -----------------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQ 151
                                        R LA R  L+ +   V+ +D GL++ +    
Sbjct: 169 PPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 228

Query: 152 TQTLTGMRETKGYLPPEWFRNMPV--------TVKVDVYSFGVMLLEIIS---------- 193
                   +    +P  W   MP         T + DV+++GV+L EI S          
Sbjct: 229 YYK----ADGNDAIPIRW---MPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 281

Query: 194 ----CRCVERQGSDPKTLEKP---------VMIAIQFVKEKPPLRPSLRIVALMLQSILE 240
                  V         L  P         +M       + P  RPS   +  +LQ + E
Sbjct: 282 HEEVIYYVRDGN----ILACPENCPLELYNLM--RLCWSKLPADRPSFCSIHRILQRMCE 335

Query: 241 VPSP 244
               
Sbjct: 336 RAEG 339

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQ--TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           + L     V+  D GLA++L  +    +T  G   T  Y+ PE    M    K D++S G
Sbjct: 147 VFLDGKQNVKLGDFGLARILNHDTSFAKTFVG---TPYYMSPEQMNRMSYNEKSDIWSLG 203

Query: 186 VMLLEIIS 193
            +L E+ +
Sbjct: 204 CLLYELCA 211

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 140 DLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEII 192
           DLG      IN    L G   T G+  PE  R  P TV  D+Y+ G  L  + 
Sbjct: 224 DLGAVS--RINSFGYLYG---TPGFQAPEIVRTGP-TVATDIYTVGRTLAALT 270

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLT--GMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           +LL D   V  SDLGLA  L   QT+T    G   T G++ PE          VD ++ G
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKTKGYAG---TPGFMAPELLLGEEYDFSVDYFALG 376

Query: 186 VMLLEII 192
           V L E+I
Sbjct: 377 VTLYEMI 383

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 40/153 (26%)

Query: 66  HHKNLVCLLGYHIEQECRL-LVYKFMHNRSISSLLYECLRPTWQQRM------------- 111
            H NLV LLG  +E++  L +V ++M   S+   L    R                    
Sbjct: 72  RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAME 131

Query: 112 ----QDCI-RDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYL 165
                + + RD      LA R +L+ +    + SD GL K      + T    +     L
Sbjct: 132 YLEGNNFVHRD------LAARNVLVSEDNVAKVSDFGLTK----EASSTQDTGK-----L 176

Query: 166 P-----PEWFRNMPVTVKVDVYSFGVMLLEIIS 193
           P     PE  R    + K DV+SFG++L EI S
Sbjct: 177 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYS 209

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 128 ILLHDYFTVETSDLGLAKLLM--INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFG 185
           + +     V+  DLGL +          +L G   T  Y+ PE         K D++S G
Sbjct: 167 VFITATGVVKLGDLGLGRFFSSKTTAAHSLVG---TPYYMSPERIHENGYNFKSDIWSLG 223

Query: 186 VMLLEIISCR 195
            +L E+ + +
Sbjct: 224 CLLYEMAALQ 233

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +LL     ++ +D G +     ++   L G   T  YLPPE         KVD++S GV+
Sbjct: 140 LLLGSAGELKIADFGWSVHAPSSRRTDLCG---TLDYLPPEMIEGRMHDEKVDLWSLGVL 196

Query: 188 LLEII 192
             E +
Sbjct: 197 CYEFL 201

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVM 187
           +L+     ++ +D G +      + +T+ G   T  YLPPE         KVD++  GV+
Sbjct: 145 LLMGYKGELKIADFGWSVHAPSLRRRTMCG---TLDYLPPEMIEGKTHDEKVDLWCAGVL 201

Query: 188 LLE 190
             E
Sbjct: 202 CYE 204

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQ-TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV 186
           ILL D+  +  SDLGLA  +   Q  +   G   T GY+ PE  +N   T   D ++ G 
Sbjct: 317 ILLDDHGHIRISDLGLAVHVPEGQTIKGRVG---TVGYMAPEVVKNERYTFSPDWWALGC 373

Query: 187 MLLEII 192
           +L E+I
Sbjct: 374 LLYEMI 379

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE-----------TKGYLPPEWFRNMPVT 176
           I       V+  D GL   +  ++ +                  TK Y+ PE       +
Sbjct: 195 IFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYS 254

Query: 177 VKVDVYSFGVMLLEII 192
            KVD++S G++L E++
Sbjct: 255 HKVDIFSLGLILFELL 270

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 38/202 (18%), Positives = 70/202 (34%), Gaps = 53/202 (26%)

Query: 35  GSFSTVYTGV--------------LAPGDKTNIGVKKLDKVVHV---AHHKNLVCLLGYH 77
           GSF TVY G+                   K+    ++  +   +     H N+V      
Sbjct: 37  GSFKTVYKGLDTETTVEVAWCELQDRKLTKSER--QRFKEEAEMLKGLQHPNIVRFYDSW 94

Query: 78  I---EQECRLLVY-KFMHNRSISSLLYECLRPTWQQ----------------RMQDCI-- 115
               + +  +++  + M + ++ + L        +                      I  
Sbjct: 95  ESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIH 154

Query: 116 RDCWRTRALAC-RILL-HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM 173
           RD      L C  I +     +V+  DLGLA L   +  + + G   T  ++ PE +   
Sbjct: 155 RD------LKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIG---TPEFMAPEMYEE- 204

Query: 174 PVTVKVDVYSFGVMLLEIISCR 195
                VDVY+FG+ +LE+ +  
Sbjct: 205 KYDESVDVYAFGMCMLEMATSE 226

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 128 ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE-----------TKGYLPPEWFRNMPVT 176
           I       V+  D GL   +  ++ +                  TK Y+ PE       +
Sbjct: 149 IFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYS 208

Query: 177 VKVDVYSFGVMLLEII 192
            KVD++S G++L E++
Sbjct: 209 HKVDIFSLGLILFELL 224

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 139 SDLGLAKLLMINQ--TQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIIS 193
           SD GL K L + +      +G+  T+G++ PE          T  VD++S G +   +IS
Sbjct: 165 SDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVIS 224

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 28/109 (25%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 139 SDLGLAKLLMINQ-TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCV 197
            DLG AK L   +      G   T  YL PE       TV VD +SFG +  E I+    
Sbjct: 166 IDLGYAKELDQGELCTEFVG---TLQYLAPELLEQKKYTVTVDYWSFGTLAFECIT---- 218

Query: 198 ERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC 246
              G  P       +     V+EK      +            V   P 
Sbjct: 219 ---GFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPN 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 24/202 (11%), Positives = 64/202 (31%), Gaps = 49/202 (24%)

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRM-QDC---IRDCWRTRAL----- 124
           L Y I+           + +     +   LR   + +  ++C   + +    +A      
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           +C+IL      + T    +   L    T  ++    +    P E                
Sbjct: 265 SCKIL------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------------- 302

Query: 185 GVMLLEIISCRCVERQGSD-PKTLEK--PVMIAI--QFVKEKPPLRPSLRIVAL-----M 234
              +  ++  + ++ +  D P+ +    P  ++I  + +++      + + V       +
Sbjct: 303 ---VKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 235 LQSILEVPSPP----CSFAFAI 252
           ++S L V  P          ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV 380

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.84
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.68
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.36
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.22
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.61
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.38
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.64
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.76
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.69
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.28
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.89
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.24
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.01
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	93.33
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	93.14
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	92.83
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	92.2
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	89.93
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	83.83

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.8e-50  Score=342.30  Aligned_cols=215  Identities=21%  Similarity=0.255  Sum_probs=179.2

Q ss_pred             hhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC
Q 042690           17 NRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        17 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~   80 (266)
                      +.+++++++|.+++.||+|+||+||+|.++ .+++.||||++.                ++++.++|||||++++++.++
T Consensus        17 n~~f~sme~Y~~~~~lG~G~fg~V~~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~   95 (350)
T 4b9d_A           17 NLYFQSMEKYVRLQKIGEGSFGKAILVKST-EDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEEN   95 (350)
T ss_dssp             CCBCSCCCCEEEEEEC------CEEEEEET-TTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             ccCCCcccceEEeEEEecCCCeEEEEEEEC-CCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEEC
Confidence            445677889999999999999999999986 678999999874                378899999999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC--C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR--P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~--~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      +.+|+|||||++|+|.+++.....  +      .+..++..++.++|.++++|+     |||++.+|.+||+|||+|+..
T Consensus        96 ~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  175 (350)
T 4b9d_A           96 GSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL  175 (350)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCC
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceee
Confidence            999999999999999999975432  2      355677788899998888888     999999999999999999876


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccccchHH
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTLEKPV  211 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~~~~~  211 (266)
                      ... ........||+.|||||++.+..++.++|||||||++|+|+||+.||...                .+...+..+.
T Consensus       176 ~~~-~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~  254 (350)
T 4b9d_A          176 NST-VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLR  254 (350)
T ss_dssp             CHH-HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHH
T ss_pred             cCC-cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHH
Confidence            422 12223467999999999999999999999999999999999999999762                2234567788


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +++.+||+.||.+|||++|+++
T Consensus       255 ~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          255 SLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHccCChhHCcCHHHHhc
Confidence            9999999999999999999975

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2e-49  Score=335.55  Aligned_cols=221  Identities=17%  Similarity=0.107  Sum_probs=186.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      ....|.+.++||+|+||+||+|+++ .+++.||||++.         .+++.++|||||++++++.+++.+|||||||++
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~-~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g  134 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDK-QTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEG  134 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             chhheEeCcEeccCCCeEEEEEEEC-CCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCC
Confidence            4567899999999999999999986 678999999875         478889999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeecccccc----ccc
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQTQ----TLT  156 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~~----~~~  156 (266)
                      |+|.++++..+.++      +..++..++.++|.++++|+     |||++.+| .+||+|||+|+........    ...
T Consensus       135 g~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~  214 (336)
T 4g3f_A          135 GSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGD  214 (336)
T ss_dssp             CBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------C
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCC
Confidence            99999998777655      44566677789998888888     99999998 5999999999876432211    122


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFV  218 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl  218 (266)
                      ...||+.|||||++.+.+++.++|||||||++|+|+||+.||....                  ++..+..+.+++.+||
T Consensus       215 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L  294 (336)
T 4g3f_A          215 YIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGL  294 (336)
T ss_dssp             CCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHT
T ss_pred             ccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHc
Confidence            3579999999999999999999999999999999999999997621                  2345567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +.||.+|||+.|+++.|........
T Consensus       295 ~~dP~~R~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          295 RKEPVHRASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             cCCHhHCcCHHHHHHHHHHHHhhhh
Confidence            9999999999999999988866544

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.6e-49  Score=334.61  Aligned_cols=221  Identities=19%  Similarity=0.225  Sum_probs=178.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++.+.++||+|+||+||+|.++.    .++..||||++.              ++++.++|||||++++++.+++..+
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            3578899999999999999999752    357889999875              3788999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC---------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           85 LVYKFMHNRSISSLLYECL---------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~---------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      +|||||++|+|.++++...               .++      +..++..++.++|..+++|+     |||++.++.+||
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki  199 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKI  199 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEE
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEE
Confidence            9999999999999997542               233      44556666788888888887     999999999999


Q ss_pred             eecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------
Q 042690          139 SDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------  200 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------  200 (266)
                      +|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||..                
T Consensus       200 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~  279 (329)
T 4aoj_A          200 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGREL  279 (329)
T ss_dssp             CCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCC
T ss_pred             cccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC
Confidence            999999876433222 2334678999999999999999999999999999999999 8999976                


Q ss_pred             CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          201 GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       201 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      ..+...++.+.+++.+||+.||.+|||++||++.|+.+.+.|+
T Consensus       280 ~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp  322 (329)
T 4aoj_A          280 ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP  322 (329)
T ss_dssp             CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred             CCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence            2344566788999999999999999999999999999988653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.2e-49  Score=334.73  Aligned_cols=219  Identities=19%  Similarity=0.247  Sum_probs=183.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      .++++++.++||+|+||+||+|.+.    ..+++.||||++.               .++++++|||||+++|++.+++.
T Consensus        24 ~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~  103 (308)
T 4gt4_A           24 SLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP  103 (308)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             CHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence            4568899999999999999999974    2356789999874               37889999999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC----------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE
Q 042690           83 RLLVYKFMHNRSISSLLYECL----------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT  135 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~----------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~  135 (266)
                      .++|||||++|+|.+++....                .++      +..++..++.++|.++++|+     |||+++++.
T Consensus       104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~  183 (308)
T 4gt4_A          104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLN  183 (308)
T ss_dssp             CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC
T ss_pred             EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCC
Confidence            999999999999999996431                233      45566677788888888887     999999999


Q ss_pred             EEEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC-------------
Q 042690          136 VETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ-------------  200 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~-------------  200 (266)
                      +||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |..||.+             
T Consensus       184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~  263 (308)
T 4gt4_A          184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR  263 (308)
T ss_dssp             EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTT
T ss_pred             EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            99999999987643322 23345678999999999998899999999999999999998 8889876             


Q ss_pred             ---CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          201 ---GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       201 ---~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                         ..+...+..+.+++.+||+.||.+||++.+|++.|+.+..
T Consensus       264 ~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n  306 (308)
T 4gt4_A          264 QVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN  306 (308)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred             CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhccC
Confidence               2345566788899999999999999999999999998753

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.5e-49  Score=332.74  Aligned_cols=220  Identities=18%  Similarity=0.250  Sum_probs=183.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .++|.+.++||+|+||+||+|.+..    .++..||||++.              +++++++|||||++++++.+++..+
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            3578999999999999999999742    357789999875              3788999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC-------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEee
Q 042690           85 LVYKFMHNRSISSLLYECL-------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSD  140 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~D  140 (266)
                      +|||||++|+|.++++..+             .++      +..++..++.++|.++++|+     |||++.++.+||+|
T Consensus        92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~D  171 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGD  171 (299)
T ss_dssp             EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECC
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECC
Confidence            9999999999999997532             244      44566667788888888888     99999999999999


Q ss_pred             cCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CC
Q 042690          141 LGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GS  202 (266)
Q Consensus       141 fg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~  202 (266)
                      ||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||..                ..
T Consensus       172 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~  251 (299)
T 4asz_A          172 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQR  251 (299)
T ss_dssp             CSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCC
T ss_pred             cccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCC
Confidence            9999865433222 2233568999999999999899999999999999999999 8999976                22


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +...+..+.+++.+||+.||.+|||+++|.+.|+.+.+.+
T Consensus       252 p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          252 PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            4456678899999999999999999999999999987643

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1e-48  Score=332.12  Aligned_cols=208  Identities=16%  Similarity=0.199  Sum_probs=179.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.|.++++||+|+||+||+|.++ .+++.||||++.              .+++.++|||||++++++.+++.+||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVR-SSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEEC-CCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            46999999999999999999986 678999999874              388899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           90 MHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |++|+|.+++....-     ..+..++..++.++|.++++|+     |||++.+|.+||+|||+|+.... .........
T Consensus       153 ~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-~~~~~~~~~  231 (346)
T 4fih_A          153 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK-EVPRRKSLV  231 (346)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-SSCCBCCCC
T ss_pred             CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCC-CCCcccccc
Confidence            999999999975321     2355667778899998888888     99999999999999999987643 223344578


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ||+.|||||++.+..|+.++|||||||++|||++|+.||....                  ....+..+.+++.+||+.|
T Consensus       232 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~d  311 (346)
T 4fih_A          232 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRD  311 (346)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSS
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999997621                  1234567889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+|||++|+++
T Consensus       312 P~~R~ta~e~l~  323 (346)
T 4fih_A          312 PAQRATAAELLK  323 (346)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999875

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-48  Score=322.85  Aligned_cols=214  Identities=21%  Similarity=0.287  Sum_probs=172.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +.+++.+.++||+|+||+||+|.++    ..||||++.                +++++++|||||++++++. ++.+++
T Consensus        34 ~~~~l~l~~~iG~G~fG~Vy~~~~~----~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~i  108 (307)
T 3omv_A           34 EASEVMLSTRIGSGSFGTVYKGKWH----GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAI  108 (307)
T ss_dssp             CTTSCCEEEECCCCSSSEEEEEESS----SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             cHHHeEEeeEEeeCCCcEEEEEEEC----CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEE
Confidence            4678899999999999999999974    247887764                3788999999999999875 456899


Q ss_pred             EEEcCCCCCHHHHHhhc-CCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-c
Q 042690           86 VYKFMHNRSISSLLYEC-LRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-T  152 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~-~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~  152 (266)
                      |||||++|+|.+++... ..+++      ..++..++.++|+.+++|+     |||++.++.+||+|||+|+...... .
T Consensus       109 VmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~  188 (307)
T 3omv_A          109 VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS  188 (307)
T ss_dssp             EEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred             EEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence            99999999999999754 34554      4556667788898888887     9999999999999999998754322 2


Q ss_pred             cccccccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------Cccccc
Q 042690          153 QTLTGMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------DPKTLE  208 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~~~~~~  208 (266)
                      .......||+.|||||++.+   .+++.++|||||||++|||+||+.||.+..                     ++..+.
T Consensus       189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  268 (307)
T 3omv_A          189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPK  268 (307)
T ss_dssp             -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCH
T ss_pred             eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchH
Confidence            23345679999999998853   468999999999999999999999997511                     123456


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .+.+++.+||+.||.+|||+.+|++.|+.+..
T Consensus       269 ~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~  300 (307)
T 3omv_A          269 AMKRLVADCVKKVKEERPLFPQILSSIELLQH  300 (307)
T ss_dssp             HHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            78899999999999999999999999988754

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.4e-48  Score=326.83  Aligned_cols=209  Identities=16%  Similarity=0.174  Sum_probs=182.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|.+.+.||+|+||+||+|+++ .+++.||+|++.                 ++++.++|||||++++++.+++.+|+
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~-~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yi  109 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLAREL-ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYF  109 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEEC-CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            457999999999999999999986 688999999874                 27889999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-c
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-Q  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~  153 (266)
                      |||||++|+|.+++...+.++      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+....... .
T Consensus       110 vmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~  189 (311)
T 4aw0_A          110 GLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA  189 (311)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCC
T ss_pred             EEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcc
Confidence            999999999999998776654      55677778899998888888     99999999999999999998653322 2


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|||||++.+..++.++||||+||++|+|+||+.||...               .+...+..+.+++.+||
T Consensus       190 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL  269 (311)
T 4aw0_A          190 RANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLL  269 (311)
T ss_dssp             CBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHS
T ss_pred             cccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHc
Confidence            344578999999999999989999999999999999999999999762               24456678889999999


Q ss_pred             hcCCCCCCCHHHHH
Q 042690          219 KEKPPLRPSLRIVA  232 (266)
Q Consensus       219 ~~~p~~Rps~~~il  232 (266)
                      +.||.+|||++|++
T Consensus       270 ~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          270 VLDATKRLGCEEME  283 (311)
T ss_dssp             CSSGGGSTTSGGGT
T ss_pred             cCCHhHCcChHHHc
Confidence            99999999998864

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=7.9e-48  Score=334.36  Aligned_cols=208  Identities=16%  Similarity=0.199  Sum_probs=180.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.|.++++||+|+||.||+|.++ .+++.||||++.              .+|+.++|||||++++++.+++.+||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~-~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVR-SSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HhcEeeeEeccCcCcEEEEEEEC-CCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            46999999999999999999986 678999999874              488999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           90 MHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |++|+|.+++....-     ..+..++..++.++|.++++|+     |||++.+|.+||+|||+|+.... .........
T Consensus       230 ~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~-~~~~~~~~~  308 (423)
T 4fie_A          230 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK-EVPRRKSLV  308 (423)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCS-SCCCBCCCE
T ss_pred             CCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCC-CCccccccc
Confidence            999999999975322     3355677788899999998888     99999999999999999987643 223344578


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ||+.|||||++.+..|+.++|||||||++|||++|+.||.+..                  ....+..+.+++.+||+.|
T Consensus       309 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~d  388 (423)
T 4fie_A          309 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRD  388 (423)
T ss_dssp             ECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSS
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999997621                  2345677889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+|||++|+++
T Consensus       389 P~~R~ta~ell~  400 (423)
T 4fie_A          389 PAQRATAAELLK  400 (423)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999875

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2e-47  Score=315.38  Aligned_cols=207  Identities=16%  Similarity=0.235  Sum_probs=166.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++|++.+.||+|+||+||+|.++ .+++.||+|.+.                 .+++.++|||||++++++.+++.+|+
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~i   90 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHT-TTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIM   90 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECT-TTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            568999999999999999999975 678999999763                 37889999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||| +|+|.+++.+.+.++      +..++..++.++|.++++|+     |||++.++.+||+|||+|+....  ...
T Consensus        91 vmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~--~~~  167 (275)
T 3hyh_A           91 VIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD--GNF  167 (275)
T ss_dssp             EEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC----------
T ss_pred             EEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCC--CCc
Confidence            99999 679999998776654      55667777899999898888     99999999999999999987542  223


Q ss_pred             cccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      .....||+.|||||++.+..+ +.++||||+||++|+|+||+.||...               .+...+..+.+++.+||
T Consensus       168 ~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L  247 (275)
T 3hyh_A          168 LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRML  247 (275)
T ss_dssp             -------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHS
T ss_pred             cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHc
Confidence            345679999999999988776 57899999999999999999999762               23445677889999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      +.||.+|||++|+++
T Consensus       248 ~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          248 IVNPLNRISIHEIMQ  262 (275)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCChhHCcCHHHHHc
Confidence            999999999999986

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.3e-47  Score=320.75  Aligned_cols=205  Identities=19%  Similarity=0.187  Sum_probs=175.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .++|++++.||+|+||+||+|+...  .+++.||+|.+.                ++++.++|||||++++++.+++.+|
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            3579999999999999999998742  357889999875                2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +|||||++|+|.+++...+.++      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+.... ...
T Consensus       103 ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-~~~  181 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID-HEK  181 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC------C
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccC-CCc
Confidence            9999999999999998776654      44667777899998888888     99999999999999999987542 223


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|||||++.+..++.++|||||||++|+|+||+.||..               ..+...++.+.+++.+||
T Consensus       182 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L  261 (304)
T 3ubd_A          182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLF  261 (304)
T ss_dssp             CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHc
Confidence            33457799999999999999999999999999999999999999976               224456678889999999


Q ss_pred             hcCCCCCCCH
Q 042690          219 KEKPPLRPSL  228 (266)
Q Consensus       219 ~~~p~~Rps~  228 (266)
                      +.||.+|||+
T Consensus       262 ~~dP~~R~ta  271 (304)
T 3ubd_A          262 KRNPANRLGA  271 (304)
T ss_dssp             CSSGGGSTTC
T ss_pred             ccCHHHCCCC
Confidence            9999999985

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.2e-47  Score=316.02  Aligned_cols=203  Identities=20%  Similarity=0.289  Sum_probs=168.7

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe----CCeEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE----QECRLL   85 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~----~~~~~l   85 (266)
                      |++.++||+|+||+||+|.++ .++..||+|++.                ++++.++|||||++++++.+    +..+|+
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDT-ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEEC-CCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEE
Confidence            366778999999999999986 678899998764                37889999999999999875    345899


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcC--cccc-----ceeecC-CCEEEEeecCcceeecccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTR--ALAC-----RILLHD-YFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~--~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||||++|+|.+++.....++      +..++..++.++|.++  ++|+     |||++. +|.+||+|||+|+...   
T Consensus       107 vmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~---  183 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR---  183 (290)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC---
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC---
Confidence            999999999999998776654      4456677778888777  7777     999985 7999999999997543   


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMI  213 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l  213 (266)
                      ........||+.|||||++.+ .++.++|||||||++|+|+||+.||.+..                  +...++.+.++
T Consensus       184 ~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  262 (290)
T 3fpq_A          184 ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEI  262 (290)
T ss_dssp             TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHH
T ss_pred             CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHH
Confidence            223345679999999998875 69999999999999999999999997521                  11234567899


Q ss_pred             HHHhhhcCCCCCCCHHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+||+.||.+|||++++++
T Consensus       263 i~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          263 IEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             HHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHccCChhHCcCHHHHhc
Confidence            99999999999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=6.5e-47  Score=323.34  Aligned_cols=221  Identities=21%  Similarity=0.223  Sum_probs=181.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCC-CceeeeeeEEEeC-
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHH-KNLVCLLGYHIEQ-   80 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h-~~iv~~~~~~~~~-   80 (266)
                      ..++|++.+.||+|+||+||+|.+..    ...+.||+|.+.               ++++.++| ||||+++++|..+ 
T Consensus        62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~  141 (353)
T 4ase_A           62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG  141 (353)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence            45789999999999999999999752    234678998764               26777765 9999999999764 


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcC----------------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690           81 ECRLLVYKFMHNRSISSLLYECL----------------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~----------------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                      +.+++|||||++|+|.++++...                .++      +..++..++.++|.++++|+     |||++.+
T Consensus       142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~  221 (353)
T 4ase_A          142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK  221 (353)
T ss_dssp             SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCC
Confidence            56899999999999999997532                133      34566677788888888887     9999999


Q ss_pred             CEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC-----------
Q 042690          134 FTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ-----------  200 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~-----------  200 (266)
                      +.+||+|||+|+........ ......||+.|||||.+.+..++.++|||||||++|||+| |+.||.+           
T Consensus       222 ~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i  301 (353)
T 4ase_A          222 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL  301 (353)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHH
T ss_pred             CCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            99999999999876433332 2334568999999999999999999999999999999998 8999976           


Q ss_pred             ------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          201 ------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       201 ------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                            ..+...+..+.+++.+||+.||.+|||+.+|++.|+.+.+.+
T Consensus       302 ~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          302 KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             HcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence                  223445678889999999999999999999999999987643

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.5e-46  Score=314.60  Aligned_cols=214  Identities=17%  Similarity=0.163  Sum_probs=164.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-------------HhhhcCCCceeeeeeEEEeCC----eEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVCLLGYHIEQE----CRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-------------~l~~~~h~~iv~~~~~~~~~~----~~~lv~   87 (266)
                      +|.+.++||+|+||+||+|.+   .++.||||++..             .+..++|||||++++++..++    .++|||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~---~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW---RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE---TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE---CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            688899999999999999997   578999998751             334678999999999997653    579999


Q ss_pred             EcCCCCCHHHHHhhcCCCCHH------HHHHHHHHHhhhc--------Ccccc-----ceeecCCCEEEEeecCcceeec
Q 042690           88 KFMHNRSISSLLYECLRPTWQ------QRMQDCIRDCWRT--------RALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~--------~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      |||++|+|.++++.. .+++.      .++..++.++|+.        +++|+     |||++.++.+||+|||+|+...
T Consensus        81 Ey~~~gsL~~~l~~~-~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  159 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             ECCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             cCCCCCcHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence            999999999999754 34444      3444455666643        45555     9999999999999999998765


Q ss_pred             ccccc---ccccccCCCCcCCccccCCC------CCCcccchhhHHHHHHHHHhCCCcccCCC-----------------
Q 042690          149 INQTQ---TLTGMRETKGYLPPEWFRNM------PVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------  202 (266)
Q Consensus       149 ~~~~~---~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------  202 (266)
                      .....   ......||+.|||||++.+.      .++.++|||||||++|||+||.+|+....                 
T Consensus       160 ~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~  239 (303)
T 3hmm_A          160 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  239 (303)
T ss_dssp             TTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             CCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHH
Confidence            33222   22345799999999998754      36779999999999999999976553200                 


Q ss_pred             ---------------Cc-----cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          203 ---------------DP-----KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       203 ---------------~~-----~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                                     +.     +....+.+++.+||+.||.+|||+.+|++.|+.+.+..
T Consensus       240 ~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~  299 (303)
T 3hmm_A          240 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             HHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence                           00     11234678999999999999999999999999987653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.2e-45  Score=309.35  Aligned_cols=206  Identities=16%  Similarity=0.241  Sum_probs=161.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC-------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE-------   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~-------   81 (266)
                      ++|++++.||+|+||+||+|+++ .+++.||+|++.               ++++.++|||||++++++.+.+       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNK-VDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEET-TTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred             hhCEEeeEEecCCCeEEEEEEEC-CCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence            46899999999999999999986 678899999764               3788999999999999987544       


Q ss_pred             -----eEEEEEEcCCCCCHHHHHhhcCCC---------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           82 -----CRLLVYKFMHNRSISSLLYECLRP---------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        82 -----~~~lv~e~~~~~~L~~~l~~~~~~---------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                           .+|+|||||++|+|.+++......         .+..++..++.++|.++++|+     |||++.+|.+||+|||
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCc
Confidence                 368999999999999999865432         255677888899999998887     9999999999999999


Q ss_pred             cceeecccccc-----------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------
Q 042690          143 LAKLLMINQTQ-----------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------  200 (266)
Q Consensus       143 ~a~~~~~~~~~-----------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------  200 (266)
                      +|+........           ......||+.|||||++.+..++.++|||||||++|||++   ||..           
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~  240 (299)
T 4g31_A          164 LVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDV  240 (299)
T ss_dssp             CC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHH
T ss_pred             cceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHH
Confidence            99876432211           1233579999999999999999999999999999999997   5543           


Q ss_pred             ---CCCc---cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          201 ---GSDP---KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       201 ---~~~~---~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                         ..++   ...+...+++.+||+.||.+|||+.++++
T Consensus       241 ~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          241 RNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence               1111   12334567999999999999999999876

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.5e-43  Score=303.77  Aligned_cols=208  Identities=14%  Similarity=0.236  Sum_probs=173.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------C
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------E   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------~   81 (266)
                      ++|.+++.||+|+||+||+|.++ .+++.||||++.                ++|+.++|||||++++++...      +
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~-~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRR-LTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEEC-CCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence            36999999999999999999986 678999999874                388899999999999997643      5


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      .+|+|||||+ |+|.+++...+.+.      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+.....
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~  211 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTS  211 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC---
T ss_pred             EEEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccC
Confidence            6899999996 58999998776654      55677788899999999988     999999999999999999875422


Q ss_pred             ---cccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------
Q 042690          151 ---QTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------  203 (266)
Q Consensus       151 ---~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------  203 (266)
                         .........||+.|||||++.+. .++.++||||+||++|||++|++||.+...                       
T Consensus       212 ~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~  291 (398)
T 4b99_A          212 PAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVG  291 (398)
T ss_dssp             ----CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC---
T ss_pred             ccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhh
Confidence               12233457899999999998775 468999999999999999999999975211                       


Q ss_pred             -----------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                             +.......+++.+||..||.+|||++|+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          292 AERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             --CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                                   123456788999999999999999999885

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1.3e-42  Score=314.88  Aligned_cols=207  Identities=18%  Similarity=0.183  Sum_probs=177.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH--------------------HhhhcCCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK--------------------VVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~--------------------~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      ++.+|.+++.||+|+||+||+|+++ .+++.||+|++.+                    +++.++|||||++++++.+.+
T Consensus       187 slddf~i~k~LG~G~fG~V~la~~~-~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~  265 (689)
T 3v5w_A          187 TMNDFSVHRIIGRGGFGEVYGCRKA-DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD  265 (689)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             chHHeEEEEEEecccCeEEEEEEEC-CCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECC
Confidence            4678999999999999999999986 7899999998741                    344668999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      .+|+|||||+||+|.+++...+.++      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+.....
T Consensus       266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~  345 (689)
T 3v5w_A          266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  345 (689)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             EEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCC
Confidence            9999999999999999998777654      45677778899999999988     999999999999999999876422


Q ss_pred             cccccccccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPV  211 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~  211 (266)
                         ......||+.|||||++. +..++.++|+|||||++|+|++|..||..                  ..+...+..+.
T Consensus       346 ---~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~  422 (689)
T 3v5w_A          346 ---KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELR  422 (689)
T ss_dssp             ---CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHH
T ss_pred             ---CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHH
Confidence               234568999999999986 45799999999999999999999999965                  12344567788


Q ss_pred             HHHHHhhhcCCCCCCC-----HHHHH
Q 042690          212 MIAIQFVKEKPPLRPS-----LRIVA  232 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps-----~~~il  232 (266)
                      +++.+||+.||.+|++     ++||+
T Consensus       423 dLI~~lL~~dP~~Rl~~~~~ga~ei~  448 (689)
T 3v5w_A          423 SLLEGLLQRDVNRRLGCLGRGAQEVK  448 (689)
T ss_dssp             HHHHHHTCSCGGGCTTCSSSTHHHHT
T ss_pred             HHHHHHccCCHhHCCCCCCCCHHHHh
Confidence            9999999999999998     57764

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.8e-42  Score=296.17  Aligned_cols=210  Identities=19%  Similarity=0.245  Sum_probs=169.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH------------HHhhhc-CCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD------------KVVHVA-HHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..|.+.+.||+|+||+||+|.++  ..+++.||+|.+.            ++++.+ +||||+++++++.+++.+|+|||
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE  100 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMP  100 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEe
Confidence            36999999999999999999864  3467889999764            356666 69999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC---CCCHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeeccccc-------
Q 042690           89 FMHNRSISSLLYECL---RPTWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMINQT-------  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~~~-------  152 (266)
                      |+++++|.+++....   ...+..++..++.++|.++++|+     |||++.+ +.+||+|||+|+.......       
T Consensus       101 ~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~  180 (361)
T 4f9c_A          101 YLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQ  180 (361)
T ss_dssp             CCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC-
T ss_pred             CCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccc
Confidence            999999999996321   13456778888899998888888     9999877 8999999999986432111       


Q ss_pred             --------------------cccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCC--------
Q 042690          153 --------------------QTLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSD--------  203 (266)
Q Consensus       153 --------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------  203 (266)
                                          .......||+.|||||++.+.+ ++.++||||+||++|+|+||+.||..+..        
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I  260 (361)
T 4f9c_A          181 SEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQI  260 (361)
T ss_dssp             -------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHH
Confidence                                1123357999999999987754 89999999999999999999999854221        


Q ss_pred             --------------------------------------------------------------ccccchHHHHHHHhhhcC
Q 042690          204 --------------------------------------------------------------PKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       204 --------------------------------------------------------------~~~~~~~~~l~~~cl~~~  221 (266)
                                                                                    ...+....+++.+||+.|
T Consensus       261 ~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~d  340 (361)
T 4f9c_A          261 MTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLN  340 (361)
T ss_dssp             HHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSC
T ss_pred             HHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCC
Confidence                                                                          113345678999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+|||++|+++
T Consensus       341 P~~R~ta~eaL~  352 (361)
T 4f9c_A          341 PASRITAEEALL  352 (361)
T ss_dssp             TTTSCCHHHHHT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.6e-42  Score=311.17  Aligned_cols=208  Identities=16%  Similarity=0.180  Sum_probs=178.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.+|.+.+.||+|+||.||+|.++ .+++.||+|.+.              .+|+.++|||||++++++.+++.+|+|||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~-~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTER-ATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEEC-CCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            357999999999999999999986 788899999764              37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCC--CEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDY--FTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~--~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||++|+|.+++... ..+      .+..++..++.++|.++++|+     |||++.+  +.+||+|||+|+.....  ..
T Consensus       235 ~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~--~~  312 (573)
T 3uto_A          235 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK--QS  312 (573)
T ss_dssp             CCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT--SE
T ss_pred             ecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCC--Cc
Confidence            99999999999643 333      355677788899998888888     9999854  89999999999986532  23


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~~~l~~  215 (266)
                      .....||+.|||||++.+.+++.++|||||||++|+|++|+.||.+..               +    ...+..+.+++.
T Consensus       313 ~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~  392 (573)
T 3uto_A          313 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIR  392 (573)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHH
T ss_pred             eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Confidence            344679999999999999999999999999999999999999997621               1    234567789999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+||++.|+++
T Consensus       393 ~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          393 KLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             TTSCSSGGGSCCHHHHHH
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999876

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=2.4e-40  Score=279.16  Aligned_cols=221  Identities=21%  Similarity=0.286  Sum_probs=173.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ...+|.+.+.||+|+||.||+|.+   .+..||+|++.                ++++.++||||+++++++...+..++
T Consensus        35 ~~~~y~i~~~lG~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 3p86_A           35 PWCDLNIKEKIGAGSFGTVHRAEW---HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI  111 (309)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEE---TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred             ChhHceeeeEeecCCCeEEEEEEE---CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence            356899999999999999999987   57789998753                37888999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC---CC------HHHHHHHHHHHhhhcC--cccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           86 VYKFMHNRSISSLLYECLR---PT------WQQRMQDCIRDCWRTR--ALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~---~~------~~~~l~~~~~~~~~~~--~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ||||+++++|.+++.....   +.      +..++..++.++|..+  ++|+     ||+++.++.++|+|||++.....
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~  191 (309)
T 3p86_A          112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS  191 (309)
T ss_dssp             EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred             EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence            9999999999999976432   33      4456667778888888  7776     99999999999999999976432


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVM  212 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~  212 (266)
                       .........||+.|+|||++.+..++.++||||||+++|+|++|+.||...                 .+......+.+
T Consensus       192 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  270 (309)
T 3p86_A          192 -TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQVAA  270 (309)
T ss_dssp             -----------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHH
T ss_pred             -cccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHH
Confidence             222233466899999999999988999999999999999999999999752                 23345667889


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC  246 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~~~  246 (266)
                      ++.+||+.||.+||+++++++.|+.+.+...++.
T Consensus       271 li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~~  304 (309)
T 3p86_A          271 IIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPPP  304 (309)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHC------
T ss_pred             HHHHHccCChhhCcCHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999987655443

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=274.66  Aligned_cols=218  Identities=18%  Similarity=0.237  Sum_probs=182.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..+|+|++.              ++++.++||||+++++++.+++..++|||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~-~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHR-ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEET-TTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEEC-CCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence            468999999999999999999986 678889999653              37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc--
Q 042690           89 FMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT--  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~--  154 (266)
                      |+++++|.+++... ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++..........  
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  167 (310)
T 3s95_A           88 YIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEG  167 (310)
T ss_dssp             CCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------
T ss_pred             ecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccc
Confidence            99999999999863 3343      44566677788888887776     9999999999999999998754322211  


Q ss_pred             -----------cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------Ccc
Q 042690          155 -----------LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPK  205 (266)
Q Consensus       155 -----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~  205 (266)
                                 .....||+.|+|||++.+..++.++||||||+++|+|++|..|+....                  ++.
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (310)
T 3s95_A          168 LRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPN  247 (310)
T ss_dssp             ------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTT
T ss_pred             cccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCC
Confidence                       114568999999999999899999999999999999999998876521                  344


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      ....+.+++.+||+.||.+||+++++++.|+.+...
T Consensus       248 ~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          248 CPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             CCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999988654

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=7.6e-40  Score=274.20  Aligned_cols=222  Identities=18%  Similarity=0.243  Sum_probs=180.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.                 ..++.++||||+++++++..++..++|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDT-ILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEET-TTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEEC-CCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            47999999999999999999975 678889999752                 367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  169 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQT  169 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccccc
Confidence            99999999999998766554      44556666788888888877     99999999999999999987643333333


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------------CccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------------~~~~~~~~~~l~~  215 (266)
                      ....||+.|+|||++.+..++.++||||||+++|+|+||+.||....                    .+..+..+.+++.
T Consensus       170 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  249 (294)
T 4eqm_A          170 NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVIL  249 (294)
T ss_dssp             -----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHH
T ss_pred             CccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHH
Confidence            44668999999999999889999999999999999999999997622                    2234567889999


Q ss_pred             HhhhcCCCCCC-CHHHHHHHHHHHHhCCCCCC
Q 042690          216 QFVKEKPPLRP-SLRIVALMLQSILEVPSPPC  246 (266)
Q Consensus       216 ~cl~~~p~~Rp-s~~~il~~l~~~~~~~~~~~  246 (266)
                      +||+.||.+|| ++.++.+.|+.+........
T Consensus       250 ~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~~  281 (294)
T 4eqm_A          250 RATEKDKANRYKTIQEMKDDLSSVLHENRANE  281 (294)
T ss_dssp             HHSCSSGGGSCSSHHHHHHHHHTSSSSSSTTC
T ss_pred             HHhcCCHhHccccHHHHHHHHHHHHhhccCCc
Confidence            99999999998 89999999998876655433

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=8e-40  Score=274.47  Aligned_cols=209  Identities=16%  Similarity=0.174  Sum_probs=176.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..+|.+.+.||+|+||+||+|.+. .++..||+|++.              .+++.++||||+++++++...+..++|||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDV-ATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBT-TTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEEC-CCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            457999999999999999999975 678899999763              37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           89 FMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      |+++++|.+++.....     ..+..++..++.++|..+++|+     ||+++.++.++|+|||++...... .......
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~  176 (297)
T 3fxz_A           98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE-QSKRSTM  176 (297)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST-TCCBCCC
T ss_pred             CCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCc-ccccCCc
Confidence            9999999999976421     3345666777788888888877     999999999999999999876432 2233456


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      .||+.|+|||++.+..++.++||||||+++|+|++|+.||....                  +......+.+++.+||+.
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  256 (297)
T 3fxz_A          177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEM  256 (297)
T ss_dssp             CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCS
T ss_pred             cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccC
Confidence            78999999999999899999999999999999999999996521                  233456678999999999


Q ss_pred             CCCCCCCHHHHHH
Q 042690          221 KPPLRPSLRIVAL  233 (266)
Q Consensus       221 ~p~~Rps~~~il~  233 (266)
                      ||.+||+++++++
T Consensus       257 dp~~Rps~~ell~  269 (297)
T 3fxz_A          257 DVEKRGSAKELLQ  269 (297)
T ss_dssp             STTTSCCHHHHTT
T ss_pred             ChhHCcCHHHHhh
Confidence            9999999999986

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.2e-39  Score=277.17  Aligned_cols=210  Identities=18%  Similarity=0.251  Sum_probs=178.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+++|.+.+.||+|+||.||+|.+. .+++.||+|++.                ++++.++||||+++++++.+.+..++
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   91 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHI-LTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYL   91 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEE
Confidence            4678999999999999999999985 678899999763                37788999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....  ...
T Consensus        92 v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~--~~~  169 (328)
T 3fe3_A           92 IMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTV--GGK  169 (328)
T ss_dssp             EECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS--SCG
T ss_pred             EEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCC--CCc
Confidence            999999999999998766654      44666777788888888887     99999999999999999976542  223


Q ss_pred             cccccCCCCcCCccccCCCCCC-cccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVT-VKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~-~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      .....||+.|+|||.+.+..++ .++|||||||++|+|++|+.||...               .+......+.+++.+||
T Consensus       170 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L  249 (328)
T 3fe3_A          170 LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFL  249 (328)
T ss_dssp             GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHC
T ss_pred             cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHC
Confidence            3456789999999998887764 7899999999999999999999762               23345677889999999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALM  234 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~  234 (266)
                      +.||.+|||++++++.
T Consensus       250 ~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          250 VLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             CSSTTTSCCHHHHTTC
T ss_pred             CCChhHCcCHHHHhcC
Confidence            9999999999999863

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7.2e-39  Score=273.18  Aligned_cols=210  Identities=17%  Similarity=0.158  Sum_probs=178.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++++|.+.+.||+|+||+||+|..+ .+++.||+|.+.                 .+++.++||||+++++++.+.+..+
T Consensus         3 ~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            3 TMNDFDYLKLLGKGTFGKVILVREK-ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             ChHHeEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEE
Confidence            3568999999999999999999976 678899999764                 2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||+++.... ...
T Consensus        82 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-~~~  160 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-DGA  160 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-TTC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhccc-CCC
Confidence            9999999999999998766554      34566677788888888887     89999999999999999986432 222


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|+|||++.+..++.++|+||||+++|+|++|+.||...               .+......+.+++.+||
T Consensus       161 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL  240 (337)
T 1o6l_A          161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLL  240 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence            334567899999999999989999999999999999999999999752               23345677889999999


Q ss_pred             hcCCCCCC-----CHHHHHH
Q 042690          219 KEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rp-----s~~~il~  233 (266)
                      +.||.+||     +++++++
T Consensus       241 ~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          241 KKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CSSTTTSTTCSTTTHHHHHT
T ss_pred             hcCHHHhcCCCCCCHHHHHc
Confidence            99999999     8888864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=4.4e-39  Score=277.99  Aligned_cols=218  Identities=19%  Similarity=0.244  Sum_probs=180.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc------CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA------PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      .++|.+.+.||+|+||.||+|.+.      ..++..||+|.+.               .+++.+ +||||+++++++...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            468999999999999999999873      1345679999764               267778 899999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC----------------CC------HHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR----------------PT------WQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~----------------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                      +..++||||+++|+|.+++.....                +.      +..++..++.++|.++++|+     ||+++.+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~  239 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN  239 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCC
Confidence            999999999999999999986431                22      45667777788888888877     9999999


Q ss_pred             CEEEEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------
Q 042690          134 FTVETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------  201 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------  201 (266)
                      +.+||+|||+++....... .......+++.|+|||++.+..++.++||||||+++|+|+| |..||...          
T Consensus       240 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~  319 (370)
T 2psq_A          240 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLK  319 (370)
T ss_dssp             CCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH
T ss_pred             CCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHh
Confidence            9999999999986543222 12233456788999999988899999999999999999999 88888652          


Q ss_pred             ------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          202 ------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       202 ------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                            .+......+.+++.+||+.||.+||++.++++.|+.+..
T Consensus       320 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~  364 (370)
T 2psq_A          320 EGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  364 (370)
T ss_dssp             TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence                  223445578899999999999999999999999998865

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.3e-39  Score=267.64  Aligned_cols=218  Identities=22%  Similarity=0.281  Sum_probs=182.3

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.++|.+.+.||+|+||.||+|.+.  ++..||+|++.             ++++.++||||+++++++.+++..++|||
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (269)
T 4hcu_A            8 DPSELTFVQEIGSGQFGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE   85 (269)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET--TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             ChhhceeeheecCCCccEEEEEEec--CCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence            4568999999999999999999985  57779999764             37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.++|+|||++............
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  165 (269)
T 4hcu_A           86 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  165 (269)
T ss_dssp             CCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTT
T ss_pred             eCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccccccccc
Confidence            9999999999975432 33      44556667788888888876     899999999999999999876433333334


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~  219 (266)
                      ...++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...                .+......+.+++.+||+
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  245 (269)
T 4hcu_A          166 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWR  245 (269)
T ss_dssp             STTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHcc
Confidence            4556788999999988889999999999999999999 88888652                123345678899999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhC
Q 042690          220 EKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .||.+||+++++++.|+.+.+.
T Consensus       246 ~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          246 ERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCcccCcCHHHHHHHHHHHHHc
Confidence            9999999999999999998763

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=274.62  Aligned_cols=222  Identities=19%  Similarity=0.236  Sum_probs=179.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|.+.+.||+|+||.||+|.+..  ..+..||+|.+.               .+++.++||||+++++++.+.+..++
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            4579999999999999999999852  134459999764               37778899999999999998889999


Q ss_pred             EEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+++++|.+++... ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.........
T Consensus       128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  207 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDA  207 (325)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----C
T ss_pred             EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccc
Confidence            99999999999999754 3343      44556666688887777776     999999999999999999876432222


Q ss_pred             --ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHH
Q 042690          154 --TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~  214 (266)
                        ......+|+.|+|||++.+..++.++||||||+++|+|++ |..||..                ..+......+.+++
T Consensus       208 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  287 (325)
T 3kul_A          208 AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLM  287 (325)
T ss_dssp             CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHH
Confidence              2223445778999999988889999999999999999999 9999865                22334567788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      .+||+.||.+||+++++++.|+.+...+..
T Consensus       288 ~~~l~~dp~~Rps~~eil~~L~~l~~~~~~  317 (325)
T 3kul_A          288 LDCWHKDRAQRPRFSQIVSVLDALIRSPES  317 (325)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999887654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3.1e-39  Score=273.80  Aligned_cols=216  Identities=18%  Similarity=0.215  Sum_probs=172.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCC----eEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQE----CRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~----~~~   84 (266)
                      +..+|.+.+.||+|+||+||+|.+   .++.||+|++.             .+++.++||||+++++++....    .++
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~---~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   98 (322)
T 3soc_A           22 QSMPLQLLEVKARGRFGCVWKAQL---LNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW   98 (322)
T ss_dssp             TTEEEEEEEEEECSTTCEEEEEEE---TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             chhhchhhheecccCceEEEEEEE---CCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence            457899999999999999999997   47889999864             2467889999999999998743    479


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhc----------Ccccc-----ceeecCCCEEEEeecCc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRT----------RALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~----------~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      +||||+++++|.+++... .++      +..++..++.++|..          +++|+     ||+++.++.+||+|||+
T Consensus        99 lv~e~~~~g~L~~~l~~~-~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~  177 (322)
T 3soc_A           99 LITAFHEKGSLSDFLKAN-VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL  177 (322)
T ss_dssp             EEEECCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             EEEecCCCCCHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCc
Confidence            999999999999999753 333      445556666777766          66665     99999999999999999


Q ss_pred             ceeecccccc-ccccccCCCCcCCccccCCC-----CCCcccchhhHHHHHHHHHhCCCcccCCCCc-------------
Q 042690          144 AKLLMINQTQ-TLTGMRETKGYLPPEWFRNM-----PVTVKVDVYSFGVMLLEIISCRCVERQGSDP-------------  204 (266)
Q Consensus       144 a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~-----~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-------------  204 (266)
                      +......... ......||+.|+|||++.+.     .++.++|||||||++|+|+||+.||......             
T Consensus       178 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~  257 (322)
T 3soc_A          178 ALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP  257 (322)
T ss_dssp             CEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSC
T ss_pred             ccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCC
Confidence            9876533222 23346789999999998763     4567889999999999999999988652110             


Q ss_pred             -------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          205 -------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       205 -------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                               .....+.+++.+||+.||.+|||+.++++.|+.+.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          258 SLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence                                     0112378899999999999999999999999998753

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=2.8e-39  Score=266.88  Aligned_cols=218  Identities=18%  Similarity=0.227  Sum_probs=181.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.+.||+|+||.||+|.+.  ++..||+|.+.             .+++.++||||+++++++.+++..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWK--GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY   84 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET--TTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhheeeeeeeccCCCceEEEEEec--CceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence            468999999999999999999885  66779999764             377889999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.............
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  164 (268)
T 3sxs_A           85 ISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVG  164 (268)
T ss_dssp             CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCS
T ss_pred             cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccC
Confidence            999999999976432 33      44556666788887777776     8999999999999999998765443334444


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~  220 (266)
                      ..+++.|+|||.+.+..++.++||||||+++|+|+| |+.||...                .+......+.+++.+||+.
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  244 (268)
T 3sxs_A          165 TKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHE  244 (268)
T ss_dssp             CCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCS
T ss_pred             CCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCC
Confidence            556778999999988889999999999999999999 89898651                1233456788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCC
Q 042690          221 KPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ||.+||++.++++.|+.+.+..
T Consensus       245 ~p~~Rps~~~ll~~L~~l~~~~  266 (268)
T 3sxs_A          245 LPEKRPTFQQLLSSIEPLREKD  266 (268)
T ss_dssp             SGGGSCCHHHHHHHHGGGCC--
T ss_pred             ChhhCcCHHHHHHHHHHhhhcc
Confidence            9999999999999999886643

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.7e-39  Score=280.02  Aligned_cols=218  Identities=18%  Similarity=0.191  Sum_probs=179.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +.++|.+.+.||+|+||.||+|.+. .++..||+|.+.               ++++.++||||+++++++..++..++|
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  190 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLR-ADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV  190 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEe-cCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence            4568999999999999999999986 578889999753               378889999999999999988899999


Q ss_pred             EEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+++++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.+||+|||+++.........
T Consensus       191 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~  270 (377)
T 3cbl_A          191 MELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAA  270 (377)
T ss_dssp             EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEEC
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceee
Confidence            99999999999997543 233      44555666788888777776     9999999999999999998643221111


Q ss_pred             c-ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHH
Q 042690          155 L-TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       155 ~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~  216 (266)
                      . ....++..|+|||.+.+..++.++||||||+++|||+| |..||...                .+...+..+.+++.+
T Consensus       271 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  350 (377)
T 3cbl_A          271 SGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQ  350 (377)
T ss_dssp             CSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             cCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Confidence            1 12234678999999988889999999999999999998 88888651                223345678899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ||+.||.+||+++++++.|+.+.+
T Consensus       351 cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          351 CWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCCchhCcCHHHHHHHHHHHHh
Confidence            999999999999999999998865

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=7.4e-39  Score=266.35  Aligned_cols=219  Identities=22%  Similarity=0.282  Sum_probs=179.8

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      -+..+|.+.+.||+|+||.||++.+.  ++..||+|++.             ++++.++||||+++++++.+.+..++||
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   98 (283)
T 3gen_A           21 IDPKDLTFLKELGTGQFGVVKYGKWR--GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   98 (283)
T ss_dssp             CCGGGEEEEEECC---CEEEEEEEET--TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCHHHHHhHhhcCCCCCceEEEEEEc--CCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence            34568999999999999999999985  67789999765             3788899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhh-cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYE-CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~-~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++.. ...++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  178 (283)
T 3gen_A           99 EYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSS  178 (283)
T ss_dssp             CCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHST
T ss_pred             eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccc
Confidence            99999999999976 23333      44556667788888888776     89999999999999999987643333333


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ....+++.|+|||.+.+..++.++||||||+++|+|+| |+.||..                ..+......+.+++.+||
T Consensus       179 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  258 (283)
T 3gen_A          179 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCW  258 (283)
T ss_dssp             TSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTT
T ss_pred             cCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHc
Confidence            44556788999999988889999999999999999998 9989865                123334567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      +.||.+||+++++++.|+.+.+.
T Consensus       259 ~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          259 HEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCChhHCcCHHHHHHHHHHHhhc
Confidence            99999999999999999988653

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=6.3e-39  Score=268.41  Aligned_cols=225  Identities=22%  Similarity=0.296  Sum_probs=176.9

Q ss_pred             CchhhhhhHhcccCceeeeeccCCCcceEEEEEEE---cCCCcceeeeeeHH--------------HHhhhcCCCceeee
Q 042690           11 DPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVL---APGDKTNIGVKKLD--------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~---~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~   73 (266)
                      +|..+..      .+|++.+.||+|+||.||+|.+   ...++..||+|++.              .+++.++||||+++
T Consensus         3 ~~~~~~~------~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   76 (295)
T 3ugc_A            3 DPTQFEE------RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKY   76 (295)
T ss_dssp             ---CCCG------GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCE
T ss_pred             CcCcCCH------HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeE
Confidence            4555555      5899999999999999999985   23578899999754              37888999999999


Q ss_pred             eeEEEeC--CeEEEEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEe
Q 042690           74 LGYHIEQ--ECRLLVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETS  139 (266)
Q Consensus        74 ~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~  139 (266)
                      ++++...  ...++||||+++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.++|+
T Consensus        77 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~  156 (295)
T 3ugc_A           77 KGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIG  156 (295)
T ss_dssp             EEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEEC
T ss_pred             EEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEc
Confidence            9998653  458999999999999999976432 33      45566777788888888877     9999999999999


Q ss_pred             ecCcceeeccccc--cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------
Q 042690          140 DLGLAKLLMINQT--QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------  200 (266)
Q Consensus       140 Dfg~a~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------  200 (266)
                      |||++........  .......++..|+|||.+.+..++.++||||||+++|+|+||..|+..                 
T Consensus       157 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~  236 (295)
T 3ugc_A          157 DFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQM  236 (295)
T ss_dssp             CCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHH
T ss_pred             cCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccch
Confidence            9999987643222  122234467789999999888899999999999999999999877643                 


Q ss_pred             ---------------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          201 ---------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       201 ---------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                     ..+...+..+.+++.+||+.||.+||++.++++.|+.+.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~  292 (295)
T 3ugc_A          237 IVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN  292 (295)
T ss_dssp             HHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence                           11334556788999999999999999999999999998753

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=3.4e-38  Score=267.06  Aligned_cols=207  Identities=17%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +.++|.+.+.||+|+||.||+|..+ .+++.||+|.+.                 .+++.++||||+++++++.+....+
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            4 SLQDFQILRTLGTGSFGRVHLIRSR-HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEE
T ss_pred             ChHHcEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEE
Confidence            3568999999999999999999986 678899999764                 2667889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||+++....    
T Consensus        83 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~----  158 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD----  158 (318)
T ss_dssp             EEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS----
T ss_pred             EEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCC----
Confidence            9999999999999998766554      44566677788888888887     89999999999999999987532    


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|+|||++.+..++.++|+||||+++|+|++|..||...               .++.....+.+++.+||
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL  238 (318)
T 1fot_A          159 VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLI  238 (318)
T ss_dssp             CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHh
Confidence            223456899999999999989999999999999999999999999652               23445667889999999


Q ss_pred             hcCCCCCC-----CHHHHHH
Q 042690          219 KEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rp-----s~~~il~  233 (266)
                      +.||.+||     +++++++
T Consensus       239 ~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          239 TRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             CSCTTTCTTSSTTTTHHHHT
T ss_pred             ccCHHHcCCCcCCCHHHHhc
Confidence            99999999     8888863

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3.1e-38  Score=274.35  Aligned_cols=205  Identities=17%  Similarity=0.207  Sum_probs=172.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      ++.+|.+++.||+|+||+||+|+++ .+++.||+|++.+                 +++.+ +||||+++++++.+.+..
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~-~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLK-KTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL  128 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEE
Confidence            4678999999999999999999986 6788899998752                 44444 899999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++|+|.+++.....+.      +..++..++.++|..+++|+     |||++.+|.+||+|||+++.... ..
T Consensus       129 ~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~-~~  207 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-PG  207 (396)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-TT
T ss_pred             EEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeeccc-CC
Confidence            99999999999999998766654      44556677788888888887     99999999999999999986332 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------CCCccccc
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------GSDPKTLE  208 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------~~~~~~~~  208 (266)
                      .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||..                        ..+.....
T Consensus       208 ~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~  287 (396)
T 4dc2_A          208 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSV  287 (396)
T ss_dssp             CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSCH
T ss_pred             CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCCH
Confidence            334456799999999999999999999999999999999999999953                        12334556


Q ss_pred             hHHHHHHHhhhcCCCCCCCH
Q 042690          209 KPVMIAIQFVKEKPPLRPSL  228 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~  228 (266)
                      .+.+++.+||+.||.+||++
T Consensus       288 ~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          288 KAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             HHHHHHHHHTCSCTTTSTTC
T ss_pred             HHHHHHHHHhcCCHhHcCCC
Confidence            77899999999999999985

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=274.26  Aligned_cols=210  Identities=21%  Similarity=0.230  Sum_probs=176.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -++++|.+.+.||+|+||.||++.+. .++..||+|.+.                 .+++.++||||+++++++.+.+..
T Consensus        12 v~~~~y~i~~~LG~G~fG~V~~~~~~-~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~   90 (384)
T 4fr4_A           12 VNFDHFEILRAIGKGSFGKVCIVQKN-DTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDM   90 (384)
T ss_dssp             CCGGGEEEEEEEECCTTCCEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            35679999999999999999999976 678889999653                 377889999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+.+|+|.+++.....+.      +..++..++.++|..+++|+     ||+++.+|.++|+|||++.....  .
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~--~  168 (384)
T 4fr4_A           91 FMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR--E  168 (384)
T ss_dssp             EEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT--T
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccC--C
Confidence            99999999999999998766554      44566677788888888887     99999999999999999987542  2


Q ss_pred             cccccccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCC------------------CCccccchHH
Q 042690          153 QTLTGMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQG------------------SDPKTLEKPV  211 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~------------------~~~~~~~~~~  211 (266)
                      .......||+.|+|||++.+   ..++.++|+|||||++|+|++|+.||...                  .+......+.
T Consensus       169 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~  248 (384)
T 4fr4_A          169 TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMV  248 (384)
T ss_dssp             CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCHHHH
T ss_pred             CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCHHHH
Confidence            33445679999999998863   45889999999999999999999999641                  2334567788


Q ss_pred             HHHHHhhhcCCCCCCC-HHHHHH
Q 042690          212 MIAIQFVKEKPPLRPS-LRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps-~~~il~  233 (266)
                      +++.+||+.||.+||+ ++++++
T Consensus       249 ~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          249 SLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             HHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             HHHHHHhcCCHhHhcccHHHHHc
Confidence            9999999999999998 666653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-38  Score=271.79  Aligned_cols=209  Identities=17%  Similarity=0.217  Sum_probs=175.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+++|.+.+.||+|+||.||+|.+. .+++.||+|.+.                 .+++.++||||+++++++.+.+..+
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~   85 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHY-KTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIV   85 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEE
Confidence            4678999999999999999999986 678899999653                 2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+ +|+|.+++.....++      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....  ..
T Consensus        86 lv~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~--~~  162 (336)
T 3h4j_B           86 MVIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD--GN  162 (336)
T ss_dssp             EEECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT--SB
T ss_pred             EEEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccC--Cc
Confidence            999999 679999998766654      44556667788887777776     99999999999999999986542  22


Q ss_pred             ccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                      ......||+.|+|||++.+..+ ++++||||||+++|+|++|+.||....               +......+.+++.+|
T Consensus       163 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~  242 (336)
T 3h4j_B          163 FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRM  242 (336)
T ss_dssp             TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTT
T ss_pred             ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHHHHHH
Confidence            3345678999999999988775 689999999999999999999997622               233556788999999


Q ss_pred             hhcCCCCCCCHHHHHHH
Q 042690          218 VKEKPPLRPSLRIVALM  234 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~  234 (266)
                      |+.||.+|||++++++.
T Consensus       243 L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          243 IVADPMQRITIQEIRRD  259 (336)
T ss_dssp             SCSSGGGSCCHHHHTTC
T ss_pred             cCCChhHCcCHHHHHhC
Confidence            99999999999999853

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.2e-38  Score=264.34  Aligned_cols=224  Identities=13%  Similarity=0.110  Sum_probs=172.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+++|.+.+.||+|+||.||+|.+. .++..||+|.+.                 .+++.++||||+++++++..++..+
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  110 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDT-VRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLY  110 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEET-TTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEc-CCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEE
Confidence            4678999999999999999999975 578889999764                 2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.........
T Consensus       111 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  190 (309)
T 2h34_A          111 VDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT  190 (309)
T ss_dssp             EEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC----------
T ss_pred             EEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccc
Confidence            9999999999999998765544      44556666688888887776     899999999999999999876533333


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC------------------CCccccchHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG------------------SDPKTLEKPVMIAI  215 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~------------------~~~~~~~~~~~l~~  215 (266)
                      ......+++.|+|||.+.+..++.++||||||+++|+|++|+.||...                  ..+.....+.+++.
T Consensus       191 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  270 (309)
T 2h34_A          191 QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIA  270 (309)
T ss_dssp             ------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHH
T ss_pred             cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHH
Confidence            334566899999999999888999999999999999999999998652                  12345667889999


Q ss_pred             HhhhcCCCCCC-CHHHHHHHHHHHHhCCCCCC
Q 042690          216 QFVKEKPPLRP-SLRIVALMLQSILEVPSPPC  246 (266)
Q Consensus       216 ~cl~~~p~~Rp-s~~~il~~l~~~~~~~~~~~  246 (266)
                      +||+.||.+|| +++++++.|+..........
T Consensus       271 ~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~~~  302 (309)
T 2h34_A          271 RGMAKNPEDRYVTCGDLSAAAHAALATADQDR  302 (309)
T ss_dssp             HHTCSSGGGSCSSHHHHHHHHHHTCC------
T ss_pred             HhccCCHHHHHHhHHHHHHHHHHHHHhhcccc
Confidence            99999999999 99999999999877655433

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.9e-39  Score=274.95  Aligned_cols=210  Identities=17%  Similarity=0.218  Sum_probs=171.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      ++++|.+.+.||+|+||.||+|.++ .+++.||+|++.                 .+++.+ +||||+++++++.+.+..
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVK-ETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEc-CCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            4678999999999999999999986 678899999764                 245555 699999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||+++.... ..
T Consensus       100 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~-~~  178 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC-NG  178 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeeccc-CC
Confidence            99999999999999998766654      44566677788888888887     99999999999999999986432 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                      .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||....               +......+.+++.+|
T Consensus       179 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~l  258 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSF  258 (353)
T ss_dssp             -------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred             ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence            33345678999999999988889999999999999999999999997622               334566788999999


Q ss_pred             hhcCCCCCCCH------HHHHH
Q 042690          218 VKEKPPLRPSL------RIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~------~~il~  233 (266)
                      |+.||.+||++      +++++
T Consensus       259 L~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          259 MTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             TCSSGGGSTTSGGGTCTHHHHT
T ss_pred             hhhCHHHccCCcccCCHHHHhh
Confidence            99999999998      66653

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=4.2e-39  Score=273.19  Aligned_cols=217  Identities=29%  Similarity=0.413  Sum_probs=179.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ..++|.+.+.||+|+||.||+|.+.  ++..||+|++.               ++++.++||||+++++++.+.+..++|
T Consensus        28 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv  105 (326)
T 3uim_A           28 ASDNFSNKNILGRGGFGKVYKGRLA--DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  105 (326)
T ss_dssp             TTTSSCSTTEEECCSSSEEEEECCS--SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEE
T ss_pred             HhhccccceeEecCCCcEEEEEEec--CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEE
Confidence            4567999999999999999999864  68889999764               367788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCC----CC------HHHHHHHHHHHhhhc---Ccccc-----ceeecCCCEEEEeecCcceeec
Q 042690           87 YKFMHNRSISSLLYECLR----PT------WQQRMQDCIRDCWRT---RALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~----~~------~~~~l~~~~~~~~~~---~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      |||+.+++|.+++.....    +.      +..++..++.++|..   +++|+     ||+++.++.++|+|||++....
T Consensus       106 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~  185 (326)
T 3uim_A          106 YPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD  185 (326)
T ss_dssp             EECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred             EEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccC
Confidence            999999999999986432    33      345555666777777   77776     9999999999999999998765


Q ss_pred             cccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC----------------------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ----------------------------  200 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~----------------------------  200 (266)
                      ...........||+.|+|||.+.+..++.++||||||+++|+|+||+.||..                            
T Consensus       186 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (326)
T 3uim_A          186 YKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALV  265 (326)
T ss_dssp             SSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSS
T ss_pred             cccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhc
Confidence            4444444456689999999999888899999999999999999999999841                            


Q ss_pred             ------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          201 ------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       201 ------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                            .........+.+++.+||+.||.+|||++++++.|+....
T Consensus       266 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          266 DVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             CTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             ChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence                  0112234678899999999999999999999999987543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=6.4e-39  Score=286.81  Aligned_cols=218  Identities=22%  Similarity=0.310  Sum_probs=182.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...+|.+.+.||+|+||.||+|.++ ..+..||+|.+.             .+++.++||||+++++++......++|||
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E  296 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWK-KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE  296 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEG-GGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEc-CCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence            3457999999999999999999986 557889999875             37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+|+|.+++.....  +.      +..++..++.++|.++++|+     |||++.++.+||+|||+++..........
T Consensus       297 ~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~  376 (495)
T 1opk_A          297 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH  376 (495)
T ss_dssp             CCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECC
T ss_pred             ccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeec
Confidence            9999999999986432  33      34566677788888888877     99999999999999999987653333333


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++||||||+++|+|+| |..||...                .+......+.+++.+||
T Consensus       377 ~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl  456 (495)
T 1opk_A          377 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACW  456 (495)
T ss_dssp             TTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHT
T ss_pred             CCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            34556788999999988889999999999999999999 88888652                23345567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHh
Q 042690          219 KEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +.||.+||++.++++.|+.+..
T Consensus       457 ~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          457 QWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             CSSGGGSCCHHHHHHHHHTSCS
T ss_pred             CcChhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999998754

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.6e-38  Score=271.76  Aligned_cols=210  Identities=18%  Similarity=0.237  Sum_probs=175.2

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCe
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~   82 (266)
                      -..++|.+.+.||+|+||.||+|.++ .+++.||+|++..                 +++.+ +||||+++++++.+.+.
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFK-KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEET-TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            35679999999999999999999986 6788999997642                 44444 89999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .++||||+++|+|.+++.....++      +..++..++.++|.++++|+     ||+++.+|.++|+|||+++..... 
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~-  171 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLG-  171 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT-
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccC-
Confidence            999999999999999998766554      44566677788888888887     899999999999999999864321 


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~  216 (266)
                      ........||+.|+|||++.+..++.++|+|||||++|+|++|..||....               +......+.+++.+
T Consensus       172 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~  251 (345)
T 1xjd_A          172 DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVK  251 (345)
T ss_dssp             TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHH
T ss_pred             CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence            223345678999999999999899999999999999999999999997522               23355678899999


Q ss_pred             hhhcCCCCCCCHH-HHH
Q 042690          217 FVKEKPPLRPSLR-IVA  232 (266)
Q Consensus       217 cl~~~p~~Rps~~-~il  232 (266)
                      ||+.||.+||++. +++
T Consensus       252 lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          252 LFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HSCSSGGGSBTTBSCGG
T ss_pred             HhcCCHhHcCCChHHHH
Confidence            9999999999987 554

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=2.3e-38  Score=276.40  Aligned_cols=211  Identities=14%  Similarity=0.146  Sum_probs=177.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ...+|.+.+.||+|+||.||+|.++ .++..||+|++.                 .+++.++||||+++++++.+....+
T Consensus        67 ~~~~y~~~~~LG~G~fG~V~~~~~~-~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~  145 (410)
T 3v8s_A           67 KAEDYEVVKVIGRGAFGEVQLVRHK-STRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY  145 (410)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CccccEEEEEEEcCCCEEEEEEEEC-CCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence            4568999999999999999999986 678899999763                 3777889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      +||||+++|+|.+++....-     ..+..++..++.++|.++++|+     ||+++.+|.+||+|||+++.........
T Consensus       146 lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~  225 (410)
T 3v8s_A          146 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVR  225 (410)
T ss_dssp             EEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEE
T ss_pred             EEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCccc
Confidence            99999999999999975321     2345667777788888888887     9999999999999999998765433334


Q ss_pred             cccccCCCCcCCccccCCCC----CCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHH
Q 042690          155 LTGMRETKGYLPPEWFRNMP----VTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPV  211 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~----~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~  211 (266)
                      .....||+.|+|||++.+..    ++.++|+||||+++|+|++|+.||....                   .......+.
T Consensus       226 ~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~  305 (410)
T 3v8s_A          226 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAK  305 (410)
T ss_dssp             CCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHH
T ss_pred             ccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHH
Confidence            44677999999999887655    7889999999999999999999997521                   124567788


Q ss_pred             HHHHHhhhcCCCC--CCCHHHHHH
Q 042690          212 MIAIQFVKEKPPL--RPSLRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~--Rps~~~il~  233 (266)
                      +++.+||+.+|.+  ||+++|+++
T Consensus       306 ~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          306 NLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             HHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             HHHHHHccChhhhCCCCCHHHHhc
Confidence            9999999988888  999999975

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.1e-38  Score=282.56  Aligned_cols=219  Identities=21%  Similarity=0.306  Sum_probs=181.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..++|.+.+.||+|+||.||+|.+.  .+..||+|.+.             .+++.++||||+++++++. .+..++|||
T Consensus       186 ~~~~~~~~~~lG~G~fg~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e  262 (454)
T 1qcf_A          186 PRESLKLEKKLGAGQFGEVWMATYN--KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITE  262 (454)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEET--TTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred             chHHeEEEEEcccCCceEEEEEEEC--CccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEe
Confidence            4567999999999999999999985  57789999765             3788999999999999986 567899999


Q ss_pred             cCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+|+|.+++....  .+      .+..++..++.++|..+++|+     |||++.++.+||+|||+++..........
T Consensus       263 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~  342 (454)
T 1qcf_A          263 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR  342 (454)
T ss_dssp             CCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTT
T ss_pred             ecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceecc
Confidence            999999999997432  23      345667777788888888887     99999999999999999987543222223


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++||||||+++|||+| |+.||...                .+...+..+.+++.+||
T Consensus       343 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl  422 (454)
T 1qcf_A          343 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCW  422 (454)
T ss_dssp             CSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHT
T ss_pred             CCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            34456788999999988889999999999999999999 99998651                23345677889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +.||.+||++++|++.|+.+.....
T Consensus       423 ~~dp~~RPt~~~i~~~L~~~~~~~~  447 (454)
T 1qcf_A          423 KNRPEERPTFEYIQSVLDDFYTATE  447 (454)
T ss_dssp             CSSGGGSCCHHHHHHHHHTSSSSSC
T ss_pred             cCChhHCcCHHHHHHHHHHHHhccc
Confidence            9999999999999999998865443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.7e-38  Score=271.56  Aligned_cols=207  Identities=18%  Similarity=0.161  Sum_probs=175.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..++|.+.+.||+|+||.||+|.++ .++..||+|++.+                  +++.++||||+++++++.+.+..
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~  114 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHK-AEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKL  114 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEET-TTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEc-CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEE
Confidence            4568999999999999999999986 6788899998742                  24567899999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+||||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||+++.... ..
T Consensus       115 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~-~~  193 (373)
T 2r5t_A          115 YFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-HN  193 (373)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC-CC
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccccccc-CC
Confidence            99999999999999998766544      44566677788888888887     99999999999999999976432 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~c  217 (266)
                      .......||+.|+|||++.+..++.++|+|||||++|+|++|..||...               .++.....+.+++.+|
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~li~~l  273 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHLLEGL  273 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHHHHHH
T ss_pred             CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHH
Confidence            2334567899999999999989999999999999999999999999752               2345567788999999


Q ss_pred             hhcCCCCCCCHHH
Q 042690          218 VKEKPPLRPSLRI  230 (266)
Q Consensus       218 l~~~p~~Rps~~~  230 (266)
                      |+.||.+||++.+
T Consensus       274 L~~dp~~R~~~~~  286 (373)
T 2r5t_A          274 LQKDRTKRLGAKD  286 (373)
T ss_dssp             TCSSGGGSTTTTT
T ss_pred             cccCHHhCCCCCC
Confidence            9999999999753

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.3e-38  Score=276.42  Aligned_cols=209  Identities=18%  Similarity=0.205  Sum_probs=174.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||.||++.+. .++..+|+|.+.                .+++.++||||+++++++.+++..++||
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~-~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKV-LAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEET-TTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             CCeEEEEEeccCCCeEEEEEEEC-CCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            37999999999999999999976 678889998653                3788999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec---CCCEEEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH---DYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~---~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+.+|+|.+++.....++      +..++..++.++|..+++|+     ||+++   .++.+||+|||++...... ..
T Consensus        90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~-~~  168 (444)
T 3soa_A           90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE-QQ  168 (444)
T ss_dssp             CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTT-CC
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCC-Cc
Confidence            9999999999998766544      44666677788888888877     89998   4678999999999875422 22


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~  214 (266)
                      ......||+.|+|||++.+..++.++||||||+++|+|++|..||....                   .......+.+++
T Consensus       169 ~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  248 (444)
T 3soa_A          169 AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLI  248 (444)
T ss_dssp             BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHH
T ss_pred             eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHH
Confidence            3345678999999999998899999999999999999999999986521                   123567788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+||+.||.+||++.++++.
T Consensus       249 ~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          249 NKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             HHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHcCCChhHCCCHHHHhcC
Confidence            99999999999999999863

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.7e-38  Score=269.42  Aligned_cols=211  Identities=19%  Similarity=0.244  Sum_probs=176.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +++|.+.+.||+|+||.||+|.+. .++..||+|.+.               .+++.++||||+++++++.+++..++||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~   84 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNR-VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEEC-CCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            468999999999999999999986 678889999753               3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-cccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-TQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~~~~  155 (266)
                      ||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++....... ....
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  164 (323)
T 3tki_A           85 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  164 (323)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCccccc
Confidence            9999999999998665544      44566667788888887776     9999999999999999998754322 2233


Q ss_pred             ccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCCC------------------ccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGSD------------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~~~~~~~~~l~~~  216 (266)
                      ....||+.|+|||++.+..+ +.++||||||+++|+|++|+.||.....                  ......+.+++.+
T Consensus       165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (323)
T 3tki_A          165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHK  244 (323)
T ss_dssp             CSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHH
T ss_pred             CCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHH
Confidence            45678999999999887665 7789999999999999999999975221                  2345677889999


Q ss_pred             hhhcCCCCCCCHHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~  234 (266)
                      ||+.||.+||+++|+++.
T Consensus       245 ~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          245 ILVENPSARITIPDIKKD  262 (323)
T ss_dssp             HSCSSTTTSCCHHHHTTC
T ss_pred             HccCChhhCcCHHHHhhC
Confidence            999999999999999863

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.6e-37  Score=264.14  Aligned_cols=215  Identities=10%  Similarity=0.078  Sum_probs=178.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .+|.+.+.||+|+||.||+|.+. .+++.||+|.+.            .+++.+ +||||+++++++.+....++||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNL-YTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEET-TTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEEeeccCCceEEEEEEC-CCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            47999999999999999999975 678899999764            477888 8999999999999999999999999


Q ss_pred             CCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE-----EEEeecCcceeecccccc
Q 042690           91 HNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT-----VETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        91 ~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~-----~~l~Dfg~a~~~~~~~~~  153 (266)
                       +++|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.     ++|+|||++.........
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~  166 (330)
T 2izr_A           88 -GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETK  166 (330)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTC
T ss_pred             -CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCC
Confidence             88999999864 3343      44566667788888888877     899999887     999999999876433222


Q ss_pred             ------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCcc----------------------
Q 042690          154 ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK----------------------  205 (266)
Q Consensus       154 ------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~----------------------  205 (266)
                            ......||+.|+|||++.+..++.++||||||+++|+|++|+.||.......                      
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  246 (330)
T 2izr_A          167 KHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCE  246 (330)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             ccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhc
Confidence                  1235678999999999999899999999999999999999999997632211                      


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ..+.+.+++..||+.||.+||++++|.+.|+.+.+
T Consensus       247 ~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~  281 (330)
T 2izr_A          247 NFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD  281 (330)
T ss_dssp             TCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence            02278889999999999999999999999988754

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=4.4e-38  Score=267.02  Aligned_cols=218  Identities=18%  Similarity=0.222  Sum_probs=175.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcce----eeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTN----IGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~----vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++..    +++|.+.               .+++.++||||+++++++. ++..
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~-~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~   89 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWI-PEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL   89 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEEC-CTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred             HhHceeeeeeeecCCceEEEEEEc-CCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence            358999999999999999999986 34443    6666543               3777889999999999886 4568


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||+.+++|.+++.... .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||+++......
T Consensus        90 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  169 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDD  169 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCT
T ss_pred             EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCccc
Confidence            89999999999999997542 2      3355667777888888888887     9999999999999999998764332


Q ss_pred             cc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHH
Q 042690          152 TQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMI  213 (266)
Q Consensus       152 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l  213 (266)
                      .. ......++..|+|||++.+..++.++||||||+++|+|+| |..||....                +......+.++
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  249 (325)
T 3kex_A          170 KQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDVYMV  249 (325)
T ss_dssp             TCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTTTHH
T ss_pred             ccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHHHHH
Confidence            22 2234567789999999988889999999999999999999 999997522                23345678889


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +.+||+.||.+||++.++++.|+.+...+
T Consensus       250 i~~~l~~dp~~Rps~~el~~~l~~~~~~~  278 (325)
T 3kex_A          250 MVKCWMIDENIRPTFKELANEFTRMARDP  278 (325)
T ss_dssp             HHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999986543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.6e-38  Score=260.74  Aligned_cols=218  Identities=22%  Similarity=0.269  Sum_probs=181.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.++|.+.+.||+|+||.||++.+.  ++..|++|.+.             ++++.++||||+++++++.+++..++|||
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (267)
T 3t9t_A            6 DPSELTFVQEIGSGQFGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE   83 (267)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET--TTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEC
T ss_pred             chhheeeeeEecCCCceeEEEEEec--CCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEe
Confidence            4578999999999999999999985  66789999765             37788899999999999999899999999


Q ss_pred             cCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+++++|.+++.... .++      +..++..++..+|..+++|+     ||+++.++.++|+|||++............
T Consensus        84 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~  163 (267)
T 3t9t_A           84 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST  163 (267)
T ss_dssp             CCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTT
T ss_pred             CCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccccccc
Confidence            999999999997643 233      34556666788888887776     899999999999999999865433223333


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~  219 (266)
                      ...++..|+|||.+.+..++.++|+||||+++|+|++ |+.||...                .+......+.+++.+||+
T Consensus       164 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~  243 (267)
T 3t9t_A          164 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWR  243 (267)
T ss_dssp             STTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             cccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHcc
Confidence            4556788999999988889999999999999999999 88888652                123345678899999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhC
Q 042690          220 EKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       220 ~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .||.+||+++++++.|+.+.+.
T Consensus       244 ~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          244 ERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CChhhCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998763

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.1e-38  Score=270.86  Aligned_cols=206  Identities=15%  Similarity=0.169  Sum_probs=174.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .|.+.+.||+|+||.||++.++ .++..||+|.+.                    .+++.++||||+++++++.+....+
T Consensus        13 ~y~~~~~LG~G~fg~V~~~~~~-~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~   91 (361)
T 2yab_A           13 FYDIGEELGSGQFAIVKKCREK-STGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV   91 (361)
T ss_dssp             TEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ceEEeeEEeeCcCEEEEEEEEC-CCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence            6999999999999999999986 678889998653                    3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC----EEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF----TVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~----~~~l~Dfg~a~~~~~  149 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++    .++|+|||++.....
T Consensus        92 lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~  171 (361)
T 2yab_A           92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (361)
T ss_dssp             EEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC
Confidence            9999999999999998766544      44566667788888888877     89998877    799999999987643


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~  210 (266)
                        ........||+.|+|||++.+..++.++||||||+++|+|++|..||....               +    ......+
T Consensus       172 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  249 (361)
T 2yab_A          172 --GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELA  249 (361)
T ss_dssp             --TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHH
T ss_pred             --CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHH
Confidence              223345678999999999998889999999999999999999999997522               1    1234567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||..||.+||++.++++
T Consensus       250 ~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          250 KDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHCCCChhHCcCHHHHhc
Confidence            88999999999999999999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=8.4e-38  Score=267.49  Aligned_cols=205  Identities=17%  Similarity=0.204  Sum_probs=171.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      +.++|.+.+.||+|+||.||+|.++ .+++.||+|++.                 .+++.+ +||||+++++++.+.+..
T Consensus         7 ~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   85 (345)
T 3a8x_A            7 GLQDFDLLRVIGRGSYAKVLLVRLK-KTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRL   85 (345)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             chhheEEEEEEEecCCeEEEEEEEC-CCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEE
Confidence            3568999999999999999999986 678899999864                 245555 799999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++++|.+++.....++      +..++..++.++|.++++|+     ||+++.+|.++|+|||+++.... ..
T Consensus        86 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~-~~  164 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-PG  164 (345)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC-TT
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccC-CC
Confidence            99999999999999998766554      44566677788888888887     99999999999999999986432 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------CCCccccc
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------GSDPKTLE  208 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------~~~~~~~~  208 (266)
                      .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||..                        ..+.....
T Consensus       165 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~  244 (345)
T 3a8x_A          165 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSV  244 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSCH
T ss_pred             CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCCH
Confidence            233456789999999999998999999999999999999999999953                        11233456


Q ss_pred             hHHHHHHHhhhcCCCCCCCH
Q 042690          209 KPVMIAIQFVKEKPPLRPSL  228 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~  228 (266)
                      .+.+++.+||+.||.+||++
T Consensus       245 ~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          245 KAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             HHHHHHHHHTCSSTTTSTTC
T ss_pred             HHHHHHHHHhcCCHhHCCCC
Confidence            77889999999999999995

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=3.8e-38  Score=261.96  Aligned_cols=218  Identities=17%  Similarity=0.179  Sum_probs=166.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||.||+|.+..  ..+..+|+|...               ..++.++||||+++++++ .++..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~   91 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVW   91 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccE
Confidence            34689999999999999999999752  235568998753               367788999999999997 456688


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (281)
T 1mp8_A           92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  171 (281)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------------
T ss_pred             EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcccc
Confidence            9999999999999997543 343      33556666788888888877     99999999999999999987653333


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAI  215 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~  215 (266)
                      .......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...                .++.....+.+++.
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~  251 (281)
T 1mp8_A          172 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMT  251 (281)
T ss_dssp             -------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Confidence            33334456788999999988889999999999999999997 88888652                22345567889999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +||+.||.+||++.++++.|+.+.+
T Consensus       252 ~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          252 KCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHH
Confidence            9999999999999999999998865

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=6.1e-38  Score=263.08  Aligned_cols=216  Identities=17%  Similarity=0.238  Sum_probs=177.3

Q ss_pred             CceeeeeccCCCcceEEEEEEE---cCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC--CeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVL---APGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ--ECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~---~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~--~~~   83 (266)
                      ..|++.+.||+|+||.||+|.+   ...++..||+|++.               .+++.++||||+++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3699999999999999999995   23578899999764               377889999999999999876  568


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||+++++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.......
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  180 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK  180 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCC
Confidence            99999999999999996443 333      44566677788888887776     9999999999999999998765332


Q ss_pred             c--cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------------------
Q 042690          152 T--QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------------------  200 (266)
Q Consensus       152 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------------------  200 (266)
                      .  .......+|..|+|||.+.+..++.++||||||+++|+|+||..|+..                             
T Consensus       181 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (302)
T 4e5w_A          181 EYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGK  260 (302)
T ss_dssp             CEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTC
T ss_pred             cceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccC
Confidence            2  122345678889999999888889999999999999999999887543                             


Q ss_pred             --CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 042690          201 --GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSIL  239 (266)
Q Consensus       201 --~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~  239 (266)
                        ..++.....+.+++.+||+.||.+||++.++++.|+.+.
T Consensus       261 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          261 RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence              123445677899999999999999999999999999875

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.2e-38  Score=268.56  Aligned_cols=208  Identities=13%  Similarity=0.172  Sum_probs=175.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|.+.+.||+|+||.||++.+. .++..+|+|.+.             .+++.++||||+++++++.+.+..++||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVET-SSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEEC-CCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            358999999999999999999976 678889998653             478899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC--CCEEEEeecCcceeecccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD--YFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~--~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      +++++|.+++.... .++      +..++..++.++|.++++|+     ||+++.  ++.++|+|||++......  ...
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~--~~~  160 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG--DNF  160 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT--CEE
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC--Ccc
Confidence            99999999997643 333      44666677788888888877     899987  789999999999876432  223


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~  216 (266)
                      ....+|+.|+|||++.+..++.++||||||+++|+|++|..||.....                   +..+..+.+++.+
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  240 (321)
T 1tki_A          161 RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDR  240 (321)
T ss_dssp             EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHT
T ss_pred             ccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHH
Confidence            345689999999999888889999999999999999999999976221                   1345678899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||..||.+|||+.++++
T Consensus       241 ~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          241 LLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TSCSSGGGSCCHHHHHH
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999986

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=3.1e-38  Score=270.79  Aligned_cols=207  Identities=18%  Similarity=0.216  Sum_probs=172.3

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .|.+.+.||+|+||.||+|.++ .+++.||+|.+.                   .+++.++||||+++++++.+++..++
T Consensus        25 ~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           25 VYELCEVIGKGPFSVVRRCINR-ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             ceEEeeEEeeCCCEEEEEEEEC-CCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            7999999999999999999976 678899999652                   36778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE---EEEeecCcceee
Q 042690           86 VYKFMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT---VETSDLGLAKLL  147 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~---~~l~Dfg~a~~~  147 (266)
                      ||||+++++|.+++....    .++      +..++..++.++|..+++|+     ||+++.++.   ++|+|||++...
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~  183 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQL  183 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEEC
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEe
Confidence            999999999998886431    222      44667777788888888887     899986654   999999999876


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------C----ccccch
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------D----PKTLEK  209 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------~----~~~~~~  209 (266)
                      ... ........||+.|+|||++.+..++.++|||||||++|+|++|..||....              .    ......
T Consensus       184 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~~~~~~~~~~s~~  262 (351)
T 3c0i_A          184 GES-GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISES  262 (351)
T ss_dssp             CTT-SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCCCCHHHHTTSCHH
T ss_pred             cCC-CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCCCCccccccCCHH
Confidence            432 222344678999999999998889999999999999999999999996521              1    234567


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+++.+||+.||.+||++.++++
T Consensus       263 ~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          263 AKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHHHHCCCChhHCcCHHHHhc
Confidence            889999999999999999999985

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=273.15  Aligned_cols=220  Identities=20%  Similarity=0.238  Sum_probs=179.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+.    ..++..||+|++.               .+++.++||||+++++++......
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            357999999999999999999963    2456789999863               377788999999999999998899


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecC
Q 042690           84 LLVYKFMHNRSISSLLYECL-------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLG  142 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg  142 (266)
                      ++||||+++++|.+++....       .+.      +..++..++.++|..+++|+     ||+++.++   .++|+|||
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG  229 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFG  229 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCc
Confidence            99999999999999998643       232      45666777788888888887     99999555   59999999


Q ss_pred             cceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCc
Q 042690          143 LAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDP  204 (266)
Q Consensus       143 ~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~  204 (266)
                      +++....... .......+|+.|+|||++.+..++.++|||||||++|+|+| |..||...                .+.
T Consensus       230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~~~~  309 (367)
T 3l9p_A          230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK  309 (367)
T ss_dssp             HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCT
T ss_pred             cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCc
Confidence            9986532222 22233557889999999988889999999999999999998 88888652                233


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      .....+.+++.+||+.||.+||+++++++.|+.+...+
T Consensus       310 ~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          310 NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            45567889999999999999999999999999987654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=8.3e-38  Score=276.56  Aligned_cols=214  Identities=21%  Similarity=0.229  Sum_probs=177.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCC-eEEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQE-CRLLVY   87 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~-~~~lv~   87 (266)
                      -+.++|.+.+.||+|+||.||+|.+   .+..||+|.+.            .+++.++||||+++++++.... ..++||
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~---~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~  266 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDY---RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT  266 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE---TTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEe---cCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence            3567899999999999999999997   46789999775            4888999999999999987765 789999


Q ss_pred             EcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+++|+|.+++.....  +.      +..++..++.++|.++++|+     ||+++.++.+||+|||+++.....    
T Consensus       267 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~----  342 (450)
T 1k9a_A          267 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----  342 (450)
T ss_dssp             ECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc----
Confidence            99999999999986543  23      44566667788888887776     999999999999999999854321    


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~c  217 (266)
                      .....++..|+|||.+.+..++.++||||||+++|+|+| |+.||...                .+...+..+.+++.+|
T Consensus       343 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~c  422 (450)
T 1k9a_A          343 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNC  422 (450)
T ss_dssp             ----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHH
Confidence            122356889999999998899999999999999999998 99898752                2334557788999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          218 VKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      |+.||.+||++.++++.|+.+...
T Consensus       423 l~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          423 WHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             cCCChhHCcCHHHHHHHHHHHHHh
Confidence            999999999999999999988654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=3.4e-37  Score=257.96  Aligned_cols=217  Identities=13%  Similarity=0.109  Sum_probs=180.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|.+.            ..++.+ +|+|++++++++......++||||+
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNL-LNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEET-TTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             cceEEEEEEeecCCEEEEEEEEC-CCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence            47999999999999999999975 678899999764            366677 7999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE-----EEEeecCcceeecccccc
Q 042690           91 HNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT-----VETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        91 ~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~-----~~l~Dfg~a~~~~~~~~~  153 (266)
                       +++|.+++..... ++      +..++..++.++|.++++|+     ||+++.++.     ++|+|||++.........
T Consensus        89 -~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  167 (298)
T 1csn_A           89 -GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  167 (298)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             -CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccc
Confidence             8899999986433 33      44566667788888888877     899987776     999999999876533221


Q ss_pred             ------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------c
Q 042690          154 ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------P  204 (266)
Q Consensus       154 ------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~  204 (266)
                            ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||.....                       +
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (298)
T 1csn_A          168 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCA  247 (298)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             ccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHh
Confidence                  22345689999999999998899999999999999999999999976221                       1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ..+..+.+++.+||+.||.+||+++++++.|+.+.+..
T Consensus       248 ~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~  285 (298)
T 1csn_A          248 GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  285 (298)
T ss_dssp             TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhc
Confidence            34567889999999999999999999999999987643

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.5e-38  Score=268.04  Aligned_cols=220  Identities=27%  Similarity=0.377  Sum_probs=179.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..+|.+.+.||+|+||.||+|.++  ++..||+|+..              .+++.++||||+++++++...+..++|||
T Consensus        38 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  115 (321)
T 2qkw_B           38 TNNFDHKFLIGHGVFGKVYKGVLR--DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYK  115 (321)
T ss_dssp             CCCCSCCCCSCBCSSSEEEEEECT--TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEE
T ss_pred             HhccCccceeecCCCeeEEEEEEC--CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEE
Confidence            457889999999999999999974  68889999654              37778899999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-
Q 042690           89 FMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-  152 (266)
                      |+++++|.+++....    .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........ 
T Consensus       116 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  195 (321)
T 2qkw_B          116 YMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQT  195 (321)
T ss_dssp             CCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCC
T ss_pred             cCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence            999999999996543    233      44555666788888777776     89999999999999999986542222 


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------------  203 (266)
                      .......||+.|+|||++.+..++.++||||||+++|+|+||+.||....+                             
T Consensus       196 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (321)
T 2qkw_B          196 HLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLAD  275 (321)
T ss_dssp             CCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTT
T ss_pred             ccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcc
Confidence            222335589999999998888899999999999999999999998864221                             


Q ss_pred             ---ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          204 ---PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       204 ---~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                         +.....+.+++.+||+.||.+||++.++++.|+...+..++
T Consensus       276 ~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~~~  319 (321)
T 2qkw_B          276 KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQES  319 (321)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSCC
T ss_pred             ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcccC
Confidence               12334567899999999999999999999999999876543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=8.6e-38  Score=267.88  Aligned_cols=207  Identities=14%  Similarity=0.100  Sum_probs=177.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||.||+|.++ .++..||+|.+.                 .+++.++||||+++++++.+.+..+
T Consensus        39 ~~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~  117 (350)
T 1rdq_E           39 QLDQFDRIKTLGTGSFGRVMLVKHK-ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CHHHCEEEEEeecCcCcEEEEEEEC-CCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEE
Confidence            4578999999999999999999986 678899999763                 3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....++      +..++..++.++|.++++|+     ||+++.+|.++|+|||+++....    
T Consensus       118 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~----  193 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG----  193 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS----
T ss_pred             EEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccC----
Confidence            9999999999999998766654      44566667788888888887     89999999999999999987532    


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|+|||++.+..++.++|+|||||++|+|++|..||...               .+......+.+++.+||
T Consensus       194 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL  273 (350)
T 1rdq_E          194 RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLL  273 (350)
T ss_dssp             CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHS
T ss_pred             CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence            223456899999999999888999999999999999999999999752               23445677889999999


Q ss_pred             hcCCCCCCC-----HHHHHH
Q 042690          219 KEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps-----~~~il~  233 (266)
                      +.||.+||+     ++++++
T Consensus       274 ~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          274 QVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CSCTTTCTTSSTTTTHHHHT
T ss_pred             hcCHHhccCCccCCHHHHHh
Confidence            999999998     787764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=3.6e-38  Score=269.00  Aligned_cols=221  Identities=18%  Similarity=0.191  Sum_probs=180.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      ..++|.+.+.||+|+||.||+|.+..    .++..||+|.+.               .+++.++||||+++++++...+.
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  124 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP  124 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence            35689999999999999999999853    345889999864               37788899999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC------------------------CCC------HHHHHHHHHHHhhhcCcccc-----c
Q 042690           83 RLLVYKFMHNRSISSLLYECL------------------------RPT------WQQRMQDCIRDCWRTRALAC-----R  127 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~------------------------~~~------~~~~l~~~~~~~~~~~~~h~-----n  127 (266)
                      .++||||+++++|.+++....                        .+.      +..++..++.++|.++++|+     |
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~N  204 (343)
T 1luf_A          125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN  204 (343)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcce
Confidence            999999999999999998642                        222      44566677788888888887     8


Q ss_pred             eeecCCCEEEEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----
Q 042690          128 ILLHDYFTVETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----  201 (266)
Q Consensus       128 ili~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----  201 (266)
                      |+++.++.++|+|||++........ .......+++.|+|||++.+..++.++||||||+++|+|+| |..||...    
T Consensus       205 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~  284 (343)
T 1luf_A          205 CLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE  284 (343)
T ss_dssp             EEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             EEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHH
Confidence            9999999999999999976532221 22234567889999999888889999999999999999999 88888652    


Q ss_pred             ------------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          202 ------------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       202 ------------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                                  .+......+.+++.+||+.||.+||++.++++.|+.+.+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~  337 (343)
T 1luf_A          285 VIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA  337 (343)
T ss_dssp             HHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred             HHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence                        23345567889999999999999999999999999987643

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2e-38  Score=274.11  Aligned_cols=220  Identities=20%  Similarity=0.269  Sum_probs=169.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|.+.+.||+|+||.||+|.+..  ..+..||+|.+.               .+++.++||||+++++++...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            3479999999999999999998642  357779999764               37778899999999999999899999


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+++++|.+++.... .+.      +..++..++.++|..+++|+     ||+++.++.+||+|||+++........
T Consensus       124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  203 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEA  203 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC------------
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCcc
Confidence            999999999999997653 344      34556666788888888877     899999999999999999876432221


Q ss_pred             --ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHH
Q 042690          154 --TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~  214 (266)
                        ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||..                ..+......+.+++
T Consensus       204 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li  283 (373)
T 2qol_A          204 AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLM  283 (373)
T ss_dssp             ----------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHHHHHH
T ss_pred             ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHH
Confidence              1122345678999999988889999999999999999998 9999864                12334567788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      .+||+.||.+||+++++++.|+.+...+
T Consensus       284 ~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          284 LDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             HHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence            9999999999999999999999997654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.8e-38  Score=270.60  Aligned_cols=219  Identities=21%  Similarity=0.243  Sum_probs=179.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      ..++|.+.+.||+|+||.||+|.+.    ..++..||+|++.               ++++.+ +||||+++++++...+
T Consensus        20 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~   99 (359)
T 3vhe_A           20 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   99 (359)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT
T ss_pred             cccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCC
Confidence            4578999999999999999999852    3567889999874               256667 7899999999998755


Q ss_pred             e-EEEEEEcCCCCCHHHHHhhcCC--------------------------------------------------------
Q 042690           82 C-RLLVYKFMHNRSISSLLYECLR--------------------------------------------------------  104 (266)
Q Consensus        82 ~-~~lv~e~~~~~~L~~~l~~~~~--------------------------------------------------------  104 (266)
                      . .++||||+.+|+|.+++.....                                                        
T Consensus       100 ~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (359)
T 3vhe_A          100 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  179 (359)
T ss_dssp             SCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------------
T ss_pred             CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhc
Confidence            4 8999999999999999976432                                                        


Q ss_pred             ----------CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-cccccccCCC
Q 042690          105 ----------PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-QTLTGMRETK  162 (266)
Q Consensus       105 ----------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~  162 (266)
                                +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........ .......+|+
T Consensus       180 ~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~  259 (359)
T 3vhe_A          180 EAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  259 (359)
T ss_dssp             ----CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECG
T ss_pred             ccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCc
Confidence                      22      44567777788888888887     99999999999999999986543222 2233456788


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------------CccccchHHHHHHHhhhcCCCC
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------------DPKTLEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------------~~~~~~~~~~l~~~cl~~~p~~  224 (266)
                      .|+|||++.+..++.++||||||+++|+|+| |..||....                 +......+.+++.+||+.||.+
T Consensus       260 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~  339 (359)
T 3vhe_A          260 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQ  339 (359)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             eeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhh
Confidence            9999999988889999999999999999998 999987522                 2335567889999999999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 042690          225 RPSLRIVALMLQSILE  240 (266)
Q Consensus       225 Rps~~~il~~l~~~~~  240 (266)
                      ||+++++++.|+.+.+
T Consensus       340 Rps~~ell~~L~~~~~  355 (359)
T 3vhe_A          340 RPTFSELVEHLGNLLQ  355 (359)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998865

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.8e-38  Score=269.19  Aligned_cols=223  Identities=20%  Similarity=0.182  Sum_probs=181.6

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      -..++|.+.+.||+|+||.||+|.+.    .+.+..||+|.+.               .+++.+ +||||+++++++...
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  121 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  121 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence            34568999999999999999999973    3567789999864               367788 899999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC-----------------------CC------HHHHHHHHHHHhhhcCcccc-----
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR-----------------------PT------WQQRMQDCIRDCWRTRALAC-----  126 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~-----------------------~~------~~~~l~~~~~~~~~~~~~h~-----  126 (266)
                      +..++||||+++++|.+++.....                       ++      +..++..++.++|..+++|+     
T Consensus       122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~  201 (344)
T 1rjb_A          122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR  201 (344)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGG
T ss_pred             CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChh
Confidence            999999999999999999976432                       22      45567777788888877776     


Q ss_pred             ceeecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC--
Q 042690          127 RILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS--  202 (266)
Q Consensus       127 nili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~--  202 (266)
                      ||+++.++.++|+|||++......... ......+|+.|+|||++.+..++.++||||||+++|+|+| |..||....  
T Consensus       202 NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~  281 (344)
T 1rjb_A          202 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD  281 (344)
T ss_dssp             GEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred             hEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH
Confidence            899999999999999999876433222 2233456788999999988889999999999999999998 998987622  


Q ss_pred             ---------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          203 ---------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       203 ---------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                                     +......+.+++.+||+.||.+||++.++++.|+.+.....
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  337 (344)
T 1rjb_A          282 ANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAE  337 (344)
T ss_dssp             HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHH
Confidence                           23345678899999999999999999999999999876543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=2.4e-38  Score=263.83  Aligned_cols=219  Identities=22%  Similarity=0.305  Sum_probs=182.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...+|.+.+.||+|+||.||+|.+. .++..+|+|.+.             .+++.++||||+++++++.+++..++|||
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWK-KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEG-GGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEec-CCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            3568999999999999999999986 568889999754             47889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++.....  ++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...........
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  169 (288)
T 3kfa_A           90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH  169 (288)
T ss_dssp             CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEE
T ss_pred             cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccc
Confidence            9999999999986433  33      33556666788887777776     89999999999999999987654333344


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....+++.|+|||.+.+..++.++||||||+++|+|++ |..||...                .+......+.+++.+||
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  249 (288)
T 3kfa_A          170 AGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACW  249 (288)
T ss_dssp             TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHT
T ss_pred             cCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHh
Confidence            44556788999999988889999999999999999999 88888652                23345567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      +.||.+||+++++++.|+.+...
T Consensus       250 ~~dp~~Rps~~~~~~~l~~~~~~  272 (288)
T 3kfa_A          250 QWNPSDRPSFAEIHQAFETMFQE  272 (288)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999988653

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=271.78  Aligned_cols=222  Identities=18%  Similarity=0.233  Sum_probs=182.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC------CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP------GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIE   79 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~   79 (266)
                      ...+|.+.+.||+|+||.||+|.+..      ..+..||+|++.               ++++.+ +||||+++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            34689999999999999999999742      344679999764               266677 89999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           80 QECRLLVYKFMHNRSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      ++..++||||+++++|.+++....                .+      .+..++..++.++|..+++|+     ||+++.
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~  226 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE  226 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECT
T ss_pred             CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcC
Confidence            999999999999999999998643                13      344566667788888888777     999999


Q ss_pred             CCEEEEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC---------
Q 042690          133 YFTVETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG---------  201 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~---------  201 (266)
                      ++.+||+|||++........ .......+++.|+|||++.+..++.++||||||+++|+|++ |..||...         
T Consensus       227 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~  306 (382)
T 3tt0_A          227 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLL  306 (382)
T ss_dssp             TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            99999999999986543222 22334556788999999998899999999999999999999 88888752         


Q ss_pred             -------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          202 -------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       202 -------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                             .+......+.+++.+||+.||.+||+++++++.|+.+.....
T Consensus       307 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  355 (382)
T 3tt0_A          307 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS  355 (382)
T ss_dssp             HTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred             HcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence                   233456778899999999999999999999999999976543

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=4.4e-38  Score=267.29  Aligned_cols=217  Identities=19%  Similarity=0.253  Sum_probs=174.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcc----eeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKT----NIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~----~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++.    .|++|.+.               .+++.++||||+++++++.... .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~-~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~   91 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWI-PEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V   91 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEC-C----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-E
T ss_pred             HHHcccceEEeeCCCeEEEEEEEc-CCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-e
Confidence            457999999999999999999975 3333    35777653               3778899999999999998755 7


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++++||+.+|+|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.+||+|||+++......
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTC
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCc
Confidence            78999999999999998643 23      355667777788888888887     9999999999999999998764332


Q ss_pred             cc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHH
Q 042690          152 TQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMI  213 (266)
Q Consensus       152 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l  213 (266)
                      .. ......+|..|+|||.+.+..++.++||||||+++|+|+| |+.||...                .++.....+.++
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  251 (327)
T 3poz_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMI  251 (327)
T ss_dssp             C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHH
T ss_pred             ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHH
Confidence            22 2233456789999999988899999999999999999999 99998751                233455678899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      +.+||+.||.+||++.++++.|+.+...
T Consensus       252 i~~~l~~~p~~Rps~~ell~~l~~~~~~  279 (327)
T 3poz_A          252 MVKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             HHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999988654

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=8.5e-38  Score=268.11  Aligned_cols=210  Identities=18%  Similarity=0.194  Sum_probs=175.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      ..++|.+.+.||+|+||.||+|.++ .+++.||+|++..                 +++.+ +||+|+++++++.+.+..
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~-~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   96 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERK-GTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   96 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEET-TEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence            4678999999999999999999986 6788999997642                 44444 799999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++|+|.+++.....+.      +..++..++.++|.++++|+     ||+++.+|.++|+|||+++.... ..
T Consensus        97 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-~~  175 (353)
T 2i0e_A           97 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW-DG  175 (353)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-TT
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc-CC
Confidence            99999999999999998766654      44566677788888888887     99999999999999999986431 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                      .......||+.|+|||++.+..++.++|+||||+++|+|++|+.||....               +......+.+++.+|
T Consensus       176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~l  255 (353)
T 2i0e_A          176 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGL  255 (353)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred             cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence            23345678999999999998899999999999999999999999997622               344567788999999


Q ss_pred             hhcCCCCCCC-----HHHHHH
Q 042690          218 VKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps-----~~~il~  233 (266)
                      |+.||.+||+     ++++++
T Consensus       256 L~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          256 MTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             TCSCTTSCTTCSTTHHHHHHT
T ss_pred             hhcCHHHcCCCCCCCHHHHhc
Confidence            9999999995     466643

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=9e-38  Score=268.91  Aligned_cols=212  Identities=15%  Similarity=0.149  Sum_probs=167.7

Q ss_pred             hcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           20 FGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        20 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .....+|.+.+.||+|+||.||++.+. .++..||+|++.             .+++.++||||+++++++.+.+..++|
T Consensus        16 ~~~~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   94 (361)
T 3uc3_A           16 MHDSDRYDFVKDIGSGNFGVARLMRDK-LTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAII   94 (361)
T ss_dssp             CCCTTTEEEEEEESSSTTSSEEEEEET-TTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCCcEEEEEEeccCCCEEEEEEEEC-CCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence            345678999999999999999999986 678899999764             377889999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE--EEEeecCcceeecccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT--VETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~--~~l~Dfg~a~~~~~~~~~  153 (266)
                      |||+.+++|.+++.....++      +..++..++.++|.++++|+     ||+++.++.  +||+|||+++....  ..
T Consensus        95 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~--~~  172 (361)
T 3uc3_A           95 MEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL--HS  172 (361)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------
T ss_pred             EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc--cC
Confidence            99999999999998766544      44666677788888888887     899987765  99999999975321  22


Q ss_pred             ccccccCCCCcCCccccCCCCCCcc-cchhhHHHHHHHHHhCCCcccCCCC---------------------ccccchHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVK-VDVYSFGVMLLEIISCRCVERQGSD---------------------PKTLEKPV  211 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~-~Di~slG~i~~~l~tg~~p~~~~~~---------------------~~~~~~~~  211 (266)
                      ......||+.|+|||++.+..++.+ +|||||||++|+|++|+.||.....                     ......+.
T Consensus       173 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  252 (361)
T 3uc3_A          173 QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECC  252 (361)
T ss_dssp             --------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHH
T ss_pred             CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHH
Confidence            2334568999999999887777655 8999999999999999999975211                     12456788


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +++.+||+.||.+|||+.++++.
T Consensus       253 ~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          253 HLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             HHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HHHHHHccCChhHCcCHHHHHhC
Confidence            99999999999999999999854

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.2e-38  Score=265.94  Aligned_cols=206  Identities=15%  Similarity=0.176  Sum_probs=173.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .|.+.+.||+|+||.||+|.+. .++..||+|.+.                    .+++.++||||+++++++.+....+
T Consensus        12 ~y~~~~~lG~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           12 YYDTGEELGSGQFAVVKKCREK-STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HEEEEEEEECCSSEEEEEEEET-TTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ceEeceEEeeCCCeEEEEEEEC-CCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            6899999999999999999986 678889998652                    3778899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC----EEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF----TVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~----~~~l~Dfg~a~~~~~  149 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++    .++|+|||++.....
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  170 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  170 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred             EEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence            9999999999999998765544      44566667788888887776     89999887    899999999987642


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~  210 (266)
                      .  .......||+.|+|||++.+..++.++||||||+++|+|++|..||.....                   ......+
T Consensus       171 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (326)
T 2y0a_A          171 G--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALA  248 (326)
T ss_dssp             T--SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHH
T ss_pred             C--CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHH
Confidence            2  223346689999999999988899999999999999999999999965221                   2234567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.||.+|||++++++
T Consensus       249 ~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          249 KDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHccCChhhCCCHHHHhc
Confidence            78999999999999999999986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.5e-37  Score=267.67  Aligned_cols=217  Identities=11%  Similarity=0.042  Sum_probs=175.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC----CcceeeeeeHHH-------------------------HhhhcCCCceeeee
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG----DKTNIGVKKLDK-------------------------VVHVAHHKNLVCLL   74 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~----~~~~vaiK~~~~-------------------------~l~~~~h~~iv~~~   74 (266)
                      ++|.+.+.||+|+||.||+|.+..+    .+..||+|.+..                         .++.++||||++++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~  114 (364)
T 3op5_A           35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYW  114 (364)
T ss_dssp             CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEE
T ss_pred             CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEE
Confidence            4799999999999999999998633    357899998531                         34567899999999


Q ss_pred             eEEEeC----CeEEEEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeec--CCCEE
Q 042690           75 GYHIEQ----ECRLLVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLH--DYFTV  136 (266)
Q Consensus        75 ~~~~~~----~~~~lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~--~~~~~  136 (266)
                      +++...    ...++||||+ +++|.+++... ..++      +..++..++.++|..+++|+     ||+++  .++.+
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~  193 (364)
T 3op5_A          115 GSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQV  193 (364)
T ss_dssp             EEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTCE
T ss_pred             eeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCeE
Confidence            998764    4589999999 99999999865 3444      44566667788888888777     99999  88999


Q ss_pred             EEeecCcceeecccccc------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------
Q 042690          137 ETSDLGLAKLLMINQTQ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------  203 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------  203 (266)
                      +|+|||+++........      ......||+.|+|||++.+..++.++||||||+++|+|+||+.||.....       
T Consensus       194 kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~  273 (364)
T 3op5_A          194 YLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRD  273 (364)
T ss_dssp             EECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHH
T ss_pred             EEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHH
Confidence            99999999876432211      11234589999999999998899999999999999999999999985211       


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                         ...+..+.+++..||+.+|.+||++++|++.|+.+...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~  330 (364)
T 3op5_A          274 SKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKA  330 (364)
T ss_dssp             HHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence                               23356788999999999999999999999999988654

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=7e-38  Score=264.00  Aligned_cols=219  Identities=19%  Similarity=0.228  Sum_probs=181.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+.    ..++..||+|.+.               .+++.++||||+++++++...+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            468999999999999999999873    2355789999764               367788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC------------------------C------CHHHHHHHHHHHhhhcCcccc-----ce
Q 042690           84 LLVYKFMHNRSISSLLYECLR------------------------P------TWQQRMQDCIRDCWRTRALAC-----RI  128 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~------------------------~------~~~~~l~~~~~~~~~~~~~h~-----ni  128 (266)
                      ++||||+++++|.+++.....                        +      .+..++..++.++|.++++|+     ||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NI  181 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNI  181 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGE
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheE
Confidence            999999999999999986432                        2      245567777788888888877     89


Q ss_pred             eecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-----
Q 042690          129 LLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-----  201 (266)
Q Consensus       129 li~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-----  201 (266)
                      +++.++.++|+|||++......... ......+++.|+|||.+.+..++.++||||||+++|+|+| |..||...     
T Consensus       182 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~  261 (314)
T 2ivs_A          182 LVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERL  261 (314)
T ss_dssp             EEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            9999999999999999876432222 2233456788999999988889999999999999999999 98888652     


Q ss_pred             -----------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          202 -----------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       202 -----------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                 .+......+.+++.+||+.||.+||++.++++.|+.+...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          262 FNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence                       2234566788999999999999999999999999998653

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.4e-37  Score=263.52  Aligned_cols=205  Identities=17%  Similarity=0.175  Sum_probs=171.5

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      |...+.||+|+||.||+|... .+++.||+|++.              .+++.++||||+++++++...+..++||||++
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~-~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~  125 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREK-HSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQ  125 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred             hhccEEeccCCCeEEEEEEEC-CCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCC
Confidence            677789999999999999975 578899999764              37778899999999999999999999999999


Q ss_pred             CCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccccC
Q 042690           92 NRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE  160 (266)
Q Consensus        92 ~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~  160 (266)
                      +++|.+++... .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ........|
T Consensus       126 ~~~L~~~l~~~-~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~g  203 (321)
T 2c30_A          126 GGALTDIVSQV-RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD-VPKRKSLVG  203 (321)
T ss_dssp             SCBHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-SCCBCCCCS
T ss_pred             CCCHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccC-ccccccccC
Confidence            99999998753 333      44555666788887777776     899999999999999999876432 222345678


Q ss_pred             CCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcCC
Q 042690          161 TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       161 ~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~p  222 (266)
                      |+.|+|||.+.+..++.++||||||+++|+|++|+.||....                  .......+.+++.+||+.||
T Consensus       204 t~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp  283 (321)
T 2c30_A          204 TPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDP  283 (321)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSST
T ss_pred             CccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCCh
Confidence            999999999998889999999999999999999999986521                  11234567899999999999


Q ss_pred             CCCCCHHHHHH
Q 042690          223 PLRPSLRIVAL  233 (266)
Q Consensus       223 ~~Rps~~~il~  233 (266)
                      .+||+++++++
T Consensus       284 ~~Rps~~ell~  294 (321)
T 2c30_A          284 QERATAQELLD  294 (321)
T ss_dssp             TTSCCHHHHHT
T ss_pred             hhCcCHHHHhc
Confidence            99999999986

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=2.4e-38  Score=280.21  Aligned_cols=222  Identities=22%  Similarity=0.287  Sum_probs=176.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..++|.+.+.||+|+||.||+|.+.  .+..||+|.+.             .+++.++||||+++++++.. +..++|||
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e  258 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWN--GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  258 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET--TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             ChhHceeeeeecCCCCeEEEEEEEC--CCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence            3467999999999999999999985  45679999765             37889999999999999865 66889999


Q ss_pred             cCCCCCHHHHHhhc--CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYEC--LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~--~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++|+|.+++...  ..+      .+..++..++.++|..+++|+     ||+++.++.+||+|||+++..........
T Consensus       259 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  338 (452)
T 1fmk_A          259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  338 (452)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             hhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecc
Confidence            99999999999743  223      344566677788888888877     99999999999999999987643322233


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++||||||+++|+|+| |+.||...                .++..+..+.+++.+||
T Consensus       339 ~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl  418 (452)
T 1fmk_A          339 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW  418 (452)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHT
T ss_pred             cCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            34456788999999888889999999999999999999 88898651                23445667889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEVPSPPC  246 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~~~~~~  246 (266)
                      +.||.+||+++++++.|+.+.....+..
T Consensus       419 ~~dP~~Rpt~~~l~~~L~~~~~~~~~~~  446 (452)
T 1fmk_A          419 RKEPEERPTFEYLQAFLEDYFTSTEPQY  446 (452)
T ss_dssp             CSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred             cCChhhCcCHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999877655443

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=5.5e-38  Score=263.12  Aligned_cols=211  Identities=18%  Similarity=0.210  Sum_probs=167.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhh--cCCCceeeeeeEEEeC----CeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHV--AHHKNLVCLLGYHIEQ----ECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~--~~h~~iv~~~~~~~~~----~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+   ++..||+|++.           +++..  ++||||+++++++...    ...++|
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv   84 (301)
T 3q4u_A            8 RDITLLECVGKGRYGEVWRGSW---QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLI   84 (301)
T ss_dssp             GGCEEEEEEEECSSEEEEEEEE---TTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEeeccCCCcEEEEEEE---CCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEe
Confidence            4899999999999999999997   67889999864           23334  7899999999997543    458899


Q ss_pred             EEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhh--------hcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           87 YKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCW--------RTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~--------~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      |||+++++|.++++.. .+      .+..++..++.++|        ..+++|+     ||+++.++.+||+|||++...
T Consensus        85 ~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           85 THYHEMGSLYDYLQLT-TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH  163 (301)
T ss_dssp             ECCCTTCBHHHHHTTC-CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             hhhccCCCHHHHHhhc-ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeec
Confidence            9999999999999643 33      34456666778888        6666665     999999999999999999876


Q ss_pred             cccccc---ccccccCCCCcCCccccCCC------CCCcccchhhHHHHHHHHHhC----------CCcccCCCC-----
Q 042690          148 MINQTQ---TLTGMRETKGYLPPEWFRNM------PVTVKVDVYSFGVMLLEIISC----------RCVERQGSD-----  203 (266)
Q Consensus       148 ~~~~~~---~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~i~~~l~tg----------~~p~~~~~~-----  203 (266)
                      ......   ......||+.|+|||++.+.      .++.++||||||+++|+|+||          +.||.....     
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~  243 (301)
T 3q4u_A          164 SQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSF  243 (301)
T ss_dssp             ETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             ccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcch
Confidence            433222   12335789999999998776      455789999999999999999          777754111     


Q ss_pred             ----------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          204 ----------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       204 ----------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                                            ......+.+++.+||+.||.+|||+.++++.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          244 EDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             hhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence                                  01224578899999999999999999999999875

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=6.7e-38  Score=276.92  Aligned_cols=210  Identities=16%  Similarity=0.142  Sum_probs=175.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ...+|.+.+.||+|+||.||+|.+. .++..||+|++.                 .+++.++||||+++++++.+.+..+
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~  224 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEK-ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLC  224 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEc-CCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEE
Confidence            3568999999999999999999976 678899999764                 2556778999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++.....++.      ..++..++.++|. .+++|+     |||++.++.++|+|||+++.... ..
T Consensus       225 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~-~~  303 (446)
T 4ejn_A          225 FVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK-DG  303 (446)
T ss_dssp             EEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC---
T ss_pred             EEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccC-CC
Confidence            99999999999999987665543      3456666677876 777776     99999999999999999975432 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~c  217 (266)
                      .......||+.|+|||++.+..++.++|||||||++|+|++|+.||...               .+......+.+++.+|
T Consensus       304 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~  383 (446)
T 4ejn_A          304 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGL  383 (446)
T ss_dssp             ---CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHH
T ss_pred             cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHH
Confidence            2334567899999999999889999999999999999999999999762               2344567788999999


Q ss_pred             hhcCCCCCC-----CHHHHHH
Q 042690          218 VKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rp-----s~~~il~  233 (266)
                      |+.||.+||     +++++++
T Consensus       384 L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          384 LKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             TCSSTTTSTTCSTTTHHHHHT
T ss_pred             cccCHHHhCCCCCCCHHHHHh
Confidence            999999999     9999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=6e-38  Score=259.18  Aligned_cols=210  Identities=20%  Similarity=0.275  Sum_probs=165.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ++++|.+.+.||+|+||.||+|.+   .+..+|+|.+.                  ++++.++||||+++++++..++..
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (271)
T 3dtc_A            5 DFAELTLEEIIGIGGFGKVYRAFW---IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNL   81 (271)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEE---TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--C
T ss_pred             chhheeeeeeeccCCCeEEEEEEE---cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCce
Confidence            467899999999999999999997   47789998753                  367788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcC---cccc-----ceeecC--------CCEEEEeec
Q 042690           84 LLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTR---ALAC-----RILLHD--------YFTVETSDL  141 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~---~~h~-----nili~~--------~~~~~l~Df  141 (266)
                      ++||||+++++|.+++... .+      .+..++..++.++|..+   ++|+     ||+++.        ++.++|+||
T Consensus        82 ~lv~e~~~~~~L~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           82 CLVMEFARGGPLNRVLSGK-RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             EEEEECCTTEEHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             EEEEEcCCCCCHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            9999999999999998643 33      34455666667777666   5555     999986        778999999


Q ss_pred             CcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCc
Q 042690          142 GLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDP  204 (266)
Q Consensus       142 g~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~  204 (266)
                      |++......   ......+++.|+|||.+.+..++.++||||||+++|+|++|+.||...                 .+.
T Consensus       161 g~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  237 (271)
T 3dtc_A          161 GLAREWHRT---TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPS  237 (271)
T ss_dssp             CC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCT
T ss_pred             Ccccccccc---cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCc
Confidence            999865422   222456899999999998888999999999999999999999999751                 123


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      .....+.+++.+||+.||.+||++.++++.|+.+
T Consensus       238 ~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          238 TCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            4556788999999999999999999999999753

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=8.4e-38  Score=263.40  Aligned_cols=220  Identities=18%  Similarity=0.205  Sum_probs=181.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEE----cCCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVL----APGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~----~~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      ..++|.+.+.||+|+||.||+|.+    ...++..||+|.+.               .+++.+ +||||+++++++..++
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            456899999999999999999986    33577889999764               266777 8999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC------------------CC------HHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR------------------PT------WQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~------------------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      ..++||||+++++|.+++.....                  ++      +..++..++.++|..+++|+     ||+++.
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~  180 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH  180 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEET
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcC
Confidence            99999999999999999986432                  33      44556667788888888877     899999


Q ss_pred             CCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC--------
Q 042690          133 YFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS--------  202 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~--------  202 (266)
                      ++.++|+|||++......... ......+++.|+|||.+.+..++.++||||||+++|+|+| |..||....        
T Consensus       181 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~  260 (313)
T 1t46_A          181 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKM  260 (313)
T ss_dssp             TTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHH
T ss_pred             CCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHH
Confidence            999999999999876433222 1223456788999999888889999999999999999999 888886522        


Q ss_pred             ---------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          203 ---------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       203 ---------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                               +......+.+++.+||+.||.+||+++++++.|+.+...
T Consensus       261 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          261 IKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             HHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             hccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence                     233556788999999999999999999999999998764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=7.9e-38  Score=275.07  Aligned_cols=211  Identities=17%  Similarity=0.141  Sum_probs=176.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||+||+|.++ .+++.||+|++.                 .+++.++||||+++++++.+++..+
T Consensus        72 ~~~~y~~~~~LG~G~fG~V~~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~  150 (437)
T 4aw2_A           72 HREDFEILKVIGRGAFGEVAVVKLK-NADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLY  150 (437)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEEeCCCEEEEEEEEc-CCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEE
Confidence            3568999999999999999999986 678889999764                 2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++|+|.+++... ..++      +..++..++.++|..+++|+     |||++.++.+||+|||+++.......
T Consensus       151 lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~  230 (437)
T 4aw2_A          151 LVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT  230 (437)
T ss_dssp             EEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSC
T ss_pred             EEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCC
Confidence            999999999999999863 4444      45667777788888888887     99999999999999999987654444


Q ss_pred             cccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------C---cccc
Q 042690          153 QTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D---PKTL  207 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~---~~~~  207 (266)
                      .......||+.|+|||++.     ...++.++|+|||||++|||++|+.||....                 +   ....
T Consensus       231 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s  310 (437)
T 4aw2_A          231 VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVS  310 (437)
T ss_dssp             EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSC
T ss_pred             cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCC
Confidence            3444567999999999886     4568999999999999999999999997521                 1   2256


Q ss_pred             chHHHHHHHhhhcCCCC--CCCHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPL--RPSLRIVAL  233 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~--Rps~~~il~  233 (266)
                      ..+.+++.+||..+|.+  ||+++|+++
T Consensus       311 ~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          311 ENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             HHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             HHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            77889999999888877  999999875

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.4e-37  Score=262.51  Aligned_cols=209  Identities=21%  Similarity=0.317  Sum_probs=170.4

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +-.++|.+.+.||+|+||+||+|.+.  +++.||+|++.                ++++.++||||+++++++.+++..+
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   95 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDS--QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLT   95 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEET--TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEEC--CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEE
Confidence            34578999999999999999999984  68899999754                3778899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++ +|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.++|+|||++..... ..
T Consensus        96 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~-~~  173 (311)
T 3niz_A           96 LVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI-PV  173 (311)
T ss_dssp             EEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTS-CC
T ss_pred             EEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCC-Cc
Confidence            99999986 88888875433 33      44566677788888888777     99999999999999999987542 22


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------  204 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------  204 (266)
                      .......+|+.|+|||++.+ ..++.++||||||+++|+|++|+.||......                           
T Consensus       174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  253 (311)
T 3niz_A          174 RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLW  253 (311)
T ss_dssp             C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHH
T ss_pred             ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchh
Confidence            23344568999999998876 45899999999999999999999999652211                           


Q ss_pred             ------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        .....+.+++.+||+.||.+|||++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          254 KQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             HSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                              12346678999999999999999999885

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=260.13  Aligned_cols=209  Identities=15%  Similarity=0.216  Sum_probs=168.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeH----------------------------------------HHH
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKL----------------------------------------DKV   61 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~----------------------------------------~~~   61 (266)
                      .+++|.+.+.||+|+||.||+|.+. .+++.||+|.+                                        .++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   89 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNE-NDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI   89 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEET-TTTEEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEEC-CCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence            3578999999999999999999975 67888999864                                        147


Q ss_pred             hhhcCCCceeeeeeEEEe--CCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ce
Q 042690           62 VHVAHHKNLVCLLGYHIE--QECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RI  128 (266)
Q Consensus        62 l~~~~h~~iv~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----ni  128 (266)
                      ++.++||||+++++++.+  ....++||||+++++|.+++.. ..++      +..++..++.++|..+++|+     ||
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Ni  168 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL-KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNL  168 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGE
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHE
Confidence            788899999999999986  5678999999999999886543 2333      44566677788888887776     89


Q ss_pred             eecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCC---CCcccchhhHHHHHHHHHhCCCcccCC----
Q 042690          129 LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMP---VTVKVDVYSFGVMLLEIISCRCVERQG----  201 (266)
Q Consensus       129 li~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~i~~~l~tg~~p~~~~----  201 (266)
                      +++.++.++|+|||++...... ........||+.|+|||++.+..   .+.++||||||+++|+|++|+.||...    
T Consensus       169 l~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  247 (298)
T 2zv2_A          169 LVGEDGHIKIADFGVSNEFKGS-DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC  247 (298)
T ss_dssp             EECTTSCEEECCCTTCEECSSS-SCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             EECCCCCEEEecCCCccccccc-cccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHH
Confidence            9999999999999999876432 22234467899999999987655   377899999999999999999998652    


Q ss_pred             -------------CCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          202 -------------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       202 -------------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                   ..+.....+.+++.+||+.||.+||++.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          248 LHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence                         12345677889999999999999999999874

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=9.3e-38  Score=268.89  Aligned_cols=207  Identities=18%  Similarity=0.226  Sum_probs=174.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||.||+|.++ .++..||+|.+.                .+++.++||||+++++++.+.+..++||
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHK-TTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEeeEEecCCCeEEEEEEEC-CCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            36999999999999999999976 678899999763                3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC---CEEEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY---FTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~---~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++.+   +.+||+|||++.....  ..
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~--~~  185 (362)
T 2bdw_A          108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND--SE  185 (362)
T ss_dssp             CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT--CC
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC--Cc
Confidence            9999999999998665544      44566677788888888887     8999865   4599999999987542  22


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~~~l~  214 (266)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|..||....               +    ......+.+++
T Consensus       186 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li  265 (362)
T 2bdw_A          186 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLI  265 (362)
T ss_dssp             SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHH
T ss_pred             ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHH
Confidence            2334678999999999998889999999999999999999999986521               1    13456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+||++.++++
T Consensus       266 ~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          266 DSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             HHHSCSSGGGSCCHHHHTT
T ss_pred             HHHcCCChhhCcCHHHHhc
Confidence            9999999999999999874

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.6e-37  Score=275.77  Aligned_cols=209  Identities=15%  Similarity=0.209  Sum_probs=177.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||.||+|.+. .+++.||+|++.                 .+++.++||||+++++++.+.+..+
T Consensus        14 ~~~~Y~l~~~LG~G~fg~V~~a~~~-~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~   92 (476)
T 2y94_A           14 KIGHYILGDTLGVGTFGKVKVGKHE-LTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIF   92 (476)
T ss_dssp             EETTEEEEEEEECCSSSCEEEEEET-TTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             eecCEEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            3568999999999999999999986 678899999763                 2677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....  ..
T Consensus        93 lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~--~~  170 (476)
T 2y94_A           93 MVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD--GE  170 (476)
T ss_dssp             EEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCT--TC
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhccc--cc
Confidence            9999999999999998766554      44566677788888888877     99999999999999999987642  22


Q ss_pred             ccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                      ......||+.|+|||.+.+..+ +.++||||||+++|+|++|+.||....               +......+.+++.+|
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~  250 (476)
T 2y94_A          171 FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHM  250 (476)
T ss_dssp             CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHH
T ss_pred             cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHHHHHH
Confidence            3344678999999999988765 689999999999999999999997622               233456788999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.||.+||+++++++
T Consensus       251 L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          251 LQVDPMKRATIKDIRE  266 (476)
T ss_dssp             TCSSTTTSCCHHHHHT
T ss_pred             cCCCchhCcCHHHHHh
Confidence            9999999999999986

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.7e-37  Score=257.74  Aligned_cols=209  Identities=20%  Similarity=0.253  Sum_probs=173.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+++|.+.+.||+|+||.||+|.+. .++..+|+|.+.                 .+++.++||||+++++++.+.+..+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   85 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREK-QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVY   85 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEc-cCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEE
Confidence            3568999999999999999999986 677889999753                 3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....   .
T Consensus        86 lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~---~  162 (279)
T 3fdn_A           86 LILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS---S  162 (279)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC------
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCc---c
Confidence            9999999999999998766544      44566677788888888776     89999999999999999865432   2


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......++..|+|||.+.+..++.++||||||+++|+|++|..||...               .+......+.+++.+||
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  242 (279)
T 3fdn_A          163 RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLL  242 (279)
T ss_dssp             -----CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHC
T ss_pred             cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHh
Confidence            223456899999999999888999999999999999999999999752               23335567889999999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALM  234 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~  234 (266)
                      +.||.+||+++++++.
T Consensus       243 ~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          243 KHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CSSGGGSCCHHHHHHC
T ss_pred             ccChhhCCCHHHHhhC
Confidence            9999999999999964

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.7e-37  Score=261.85  Aligned_cols=208  Identities=16%  Similarity=0.187  Sum_probs=175.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|.+.                      .+++.++||||+++++++.+.+
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDK-EKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEET-TTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             cceEEEeEEEecCCEEEEEEEEC-CCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            47999999999999999999976 678889998643                      4788899999999999999999


Q ss_pred             eEEEEEEcCCCC-CHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           82 CRLLVYKFMHNR-SISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        82 ~~~lv~e~~~~~-~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ..++||||+.+| +|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~  182 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLER  182 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCC
Confidence            999999999776 9999998766655      44556666788887777776     99999999999999999987643


Q ss_pred             ccccccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccC---------CCCccccchHHHHHHHhhh
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQ---------GSDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~---------~~~~~~~~~~~~l~~~cl~  219 (266)
                      .  .......||+.|+|||++.+..+ +.++||||||+++|+|++|..||..         ..+......+.+++.+||+
T Consensus       183 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  260 (335)
T 3dls_A          183 G--KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQ  260 (335)
T ss_dssp             T--CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGTTTCCCCSSCCCHHHHHHHHHHTC
T ss_pred             C--CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHHhhccCCCcccCHHHHHHHHHHcc
Confidence            2  22334568999999999988776 7899999999999999999999965         2233456788999999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 042690          220 EKPPLRPSLRIVALM  234 (266)
Q Consensus       220 ~~p~~Rps~~~il~~  234 (266)
                      .||.+||+++++++.
T Consensus       261 ~dP~~Rps~~ell~h  275 (335)
T 3dls_A          261 PVPERRTTLEKLVTD  275 (335)
T ss_dssp             SSGGGSCCHHHHHHC
T ss_pred             CChhhCcCHHHHhcC
Confidence            999999999999874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.6e-37  Score=261.61  Aligned_cols=223  Identities=17%  Similarity=0.251  Sum_probs=171.0

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+++|.+.+.||+|+||.||+|... .++..||+|++.                 .+++.++||||+++++++...+..
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  107 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACL-LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNEL  107 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEET-TTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEE
T ss_pred             ccccceEEEEeecCCCCceEEEEEEc-CCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcE
Confidence            34678999999999999999999975 578899999653                 377788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           84 LLVYKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ++||||+.+++|.+++...    ..+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++....
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~  187 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS  187 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred             EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence            9999999999999999742    223      344566667788888887776     8999999999999999998654


Q ss_pred             cccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------Cccccch
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEK  209 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~  209 (266)
                      .. ........++..|+|||.+.+..++.++||||||+++|+|++|+.||....                   .......
T Consensus       188 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (310)
T 2wqm_A          188 SK-TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYSEE  266 (310)
T ss_dssp             ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSCHH
T ss_pred             CC-CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccCHH
Confidence            22 222234568999999999998889999999999999999999999986421                   1234567


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCCC
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPP  245 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~~  245 (266)
                      +.+++.+||+.||.+||+++++++.|+.+.....++
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~  302 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS  302 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence            889999999999999999999999999997655443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=265.68  Aligned_cols=206  Identities=15%  Similarity=0.135  Sum_probs=165.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      .|.+.+.||+|+||.||+|.+. .++..||+|.+.            .+++.++||||+++++++...+..++||||+++
T Consensus        54 ~y~~~~~lG~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  132 (349)
T 2w4o_A           54 FFEVESELGRGATSIVYRCKQK-GTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTG  132 (349)
T ss_dssp             TEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             cEEEeeEEeeCCCEEEEEEEEC-CCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCC
Confidence            5899999999999999999986 667889999764            478899999999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeeccccccccccc
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      ++|.+++.....++      +..++..++.++|..+++|+     ||+++.   ++.++|+|||++.....  .......
T Consensus       133 ~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~  210 (349)
T 2w4o_A          133 GELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH--QVLMKTV  210 (349)
T ss_dssp             CBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc--ccccccc
Confidence            99999998765544      44556666788888887776     899975   88999999999986542  2222345


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------ccccchHHHHHHHhh
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------PKTLEKPVMIAIQFV  218 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~~~~~~~~~l~~~cl  218 (266)
                      .||+.|+|||.+.+..++.++|||||||++|+|++|..||.....                    ......+.+++.+||
T Consensus       211 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L  290 (349)
T 2w4o_A          211 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLI  290 (349)
T ss_dssp             --CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTS
T ss_pred             cCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHc
Confidence            689999999999988899999999999999999999999865221                    234557789999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      +.||.+||++.++++
T Consensus       291 ~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          291 VLDPKKRLTTFQALQ  305 (349)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             cCChhhCcCHHHHhc
Confidence            999999999999886

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.5e-37  Score=259.68  Aligned_cols=208  Identities=18%  Similarity=0.234  Sum_probs=169.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++|.+.+.||+|+||+||+|.++ .+++.||+|++.                .+++.++||||+++++++.+++..++|
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNR-ETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCceeeeEecCCCCeEEEEEEEC-CCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEE
Confidence            368999999999999999999986 678889999764                377788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhh-cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYE-CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~-~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+.+ ++.+++.. ...++      +..++..++.++|..+++|+     ||+++.++.++|+|||++..... ....
T Consensus        80 ~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~-~~~~  157 (292)
T 3o0g_A           80 FEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI-PVRC  157 (292)
T ss_dssp             EECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCS-CCSC
T ss_pred             EecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCC-cccc
Confidence            999986 66666654 33433      44566677788888888877     99999999999999999987542 2233


Q ss_pred             cccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCC------------------------------
Q 042690          155 LTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------------  203 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------------  203 (266)
                      .....+|+.|+|||.+.+.. ++.++||||||+++|+|++|..|+.....                              
T Consensus       158 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  237 (292)
T 3o0g_A          158 YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK  237 (292)
T ss_dssp             CCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC
T ss_pred             ccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccccc
Confidence            34567899999999887665 79999999999999999998887533111                              


Q ss_pred             ---------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     +.....+.+++.+||+.||.+|||++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          238 PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                           123456679999999999999999999885

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.3e-37  Score=262.98  Aligned_cols=210  Identities=14%  Similarity=0.128  Sum_probs=172.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      .++|.+.+.||+|+||.||++...  ..++..+|+|.+.                  .+++.++||||+++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            468999999999999999999974  2478889998753                  37888999999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .++||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.+||+|||+++..... 
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~-  174 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHD-  174 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-------
T ss_pred             EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccC-
Confidence            999999999999999998765544      44566677788888888887     899999999999999999764322 


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~  216 (266)
                      ........||+.|+|||++.+..++.++|+||||+++|+|++|+.||...               .++.....+.+++.+
T Consensus       175 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~  254 (327)
T 3a62_A          175 GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKK  254 (327)
T ss_dssp             ----CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHH
T ss_pred             CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            22233456899999999998888999999999999999999999999752               234456778899999


Q ss_pred             hhhcCCCCCC-----CHHHHHH
Q 042690          217 FVKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rp-----s~~~il~  233 (266)
                      ||+.||.+||     +++++++
T Consensus       255 ~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          255 LLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             HSCSCGGGSTTSSTTTHHHHHH
T ss_pred             HHhcCHhhccCCCCCCHHHHHc
Confidence            9999999999     6777764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1e-37  Score=264.04  Aligned_cols=226  Identities=18%  Similarity=0.250  Sum_probs=180.2

Q ss_pred             CCchhhhhhHhcccCceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH---------------HHhhhcCCCcee
Q 042690           10 ADPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD---------------KVVHVAHHKNLV   71 (266)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~---------------~~l~~~~h~~iv   71 (266)
                      -+|..+..+      .|.+.+.||+|+||+||++.++   ..+++.||+|++.               ++++.++||||+
T Consensus        23 g~~~~~~~r------~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv   96 (318)
T 3lxp_A           23 GDPTVFHKR------YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHII   96 (318)
T ss_dssp             -CCCBCCGG------GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred             CCCceecHH------HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchh
Confidence            355555552      4689999999999999998753   2478889999764               377889999999


Q ss_pred             eeeeEEEeC--CeEEEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEe
Q 042690           72 CLLGYHIEQ--ECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETS  139 (266)
Q Consensus        72 ~~~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~  139 (266)
                      ++++++.+.  ...++||||+++++|.+++....-     ..+..++..++..+|..+++|+     ||+++.++.++|+
T Consensus        97 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~  176 (318)
T 3lxp_A           97 KYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIG  176 (318)
T ss_dssp             CEEEEEEETTTTEEEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEEC
T ss_pred             hEEEEEecCCCceEEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEEC
Confidence            999999874  578999999999999999976431     2344566667788887777776     9999999999999


Q ss_pred             ecCcceeeccccc--cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------
Q 042690          140 DLGLAKLLMINQT--QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------  200 (266)
Q Consensus       140 Dfg~a~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------  200 (266)
                      |||++........  .......++..|+|||.+.+..++.++||||||+++|+|+||..||..                 
T Consensus       177 Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~  256 (318)
T 3lxp_A          177 DFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMT  256 (318)
T ss_dssp             CGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHH
T ss_pred             CccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchh
Confidence            9999987643222  122335577889999999888889999999999999999999988854                 


Q ss_pred             --------------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          201 --------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       201 --------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                    ..+......+.+++.+||+.||.+||+++++++.|+.+.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~  311 (318)
T 3lxp_A          257 VLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEK  311 (318)
T ss_dssp             HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHh
Confidence                          12334566789999999999999999999999999988654

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.4e-38  Score=266.43  Aligned_cols=209  Identities=16%  Similarity=0.244  Sum_probs=169.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC-------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE-------   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~-------   81 (266)
                      ++|.+.+.||+|+||.||+|.++ .++..||+|++.               .+++.++||||+++++++.+..       
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNK-VDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEET-TTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEc-CCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            47899999999999999999986 678899999764               3788899999999999986543       


Q ss_pred             --------------------------------------------------eEEEEEEcCCCCCHHHHHhhcCC-------
Q 042690           82 --------------------------------------------------CRLLVYKFMHNRSISSLLYECLR-------  104 (266)
Q Consensus        82 --------------------------------------------------~~~lv~e~~~~~~L~~~l~~~~~-------  104 (266)
                                                                        ..++||||+++++|.+++.....       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              27899999999999999986543       


Q ss_pred             --CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-----------cccccccCCCCcCC
Q 042690          105 --PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-----------QTLTGMRETKGYLP  166 (266)
Q Consensus       105 --~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-----------~~~~~~~~~~~y~a  166 (266)
                        ..+..++..++.++|..+++|+     ||+++.++.++|+|||++........           .......||+.|+|
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  244 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS  244 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccC
Confidence              2355677778888888888887     99999999999999999987653321           12234568999999


Q ss_pred             ccccCCCCCCcccchhhHHHHHHHHHhCCCcccC----------CC-C---ccccchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          167 PEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ----------GS-D---PKTLEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       167 PE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~----------~~-~---~~~~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      ||++.+..++.++||||||+++|+|++|..|+..          .. +   ......+.+++.+||+.||.+||++++++
T Consensus       245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l  324 (332)
T 3qd2_B          245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDII  324 (332)
T ss_dssp             HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHH
T ss_pred             hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHh
Confidence            9999988999999999999999999998876643          11 1   22345667899999999999999999998


Q ss_pred             H
Q 042690          233 L  233 (266)
Q Consensus       233 ~  233 (266)
                      +
T Consensus       325 ~  325 (332)
T 3qd2_B          325 E  325 (332)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=2.7e-37  Score=268.42  Aligned_cols=215  Identities=16%  Similarity=0.100  Sum_probs=176.3

Q ss_pred             HhcccCceeeeeccCCC--cceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC
Q 042690           19 VFGSFSHIYSLKKPCGG--SFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        19 ~~~~~~~~~~~~~ig~G--~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~   80 (266)
                      +.++.++|.+.+.||+|  +||.||+|.+. .++..||+|++.                .+++.++||||+++++++.++
T Consensus        20 ~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~   98 (389)
T 3gni_B           20 FLPEGGCYELLTVIGKGFEDLMTVNLARYK-PTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD   98 (389)
T ss_dssp             CCCCGGGEEEEEEEEEETTTTEEEEEEEET-TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             ccCCCCcEEEEecccCCcCCceEEEEEEEc-CCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC
Confidence            44567899999999999  99999999986 678899999764                377889999999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      +..++||||+++++|.+++...  ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||.+...
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~  178 (389)
T 3gni_B           99 NELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSM  178 (389)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             CEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence            9999999999999999999764  3333      44566677788888888887     999999999999999998764


Q ss_pred             ccccc------cccccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------
Q 042690          148 MINQT------QTLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------  203 (266)
Q Consensus       148 ~~~~~------~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------  203 (266)
                      .....      .......||..|+|||++.+  ..++.++|||||||++|+|++|+.||.....                
T Consensus       179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  258 (389)
T 3gni_B          179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLL  258 (389)
T ss_dssp             EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------
T ss_pred             ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccc
Confidence            32111      11122468899999999887  5789999999999999999999999975211                


Q ss_pred             ---------------------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ---------------------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ---------------------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                                   ......+.+++.+||+.||.+|||++++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h  334 (389)
T 3gni_B          259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH  334 (389)
T ss_dssp             -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence                                                         1133457789999999999999999999853

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=2.2e-37  Score=257.19  Aligned_cols=217  Identities=18%  Similarity=0.238  Sum_probs=178.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEe---------------
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIE---------------   79 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~---------------   79 (266)
                      +|.+.+.||+|+||.||+|.+. .+++.||+|.+.          ++++.++||||+++++++..               
T Consensus        12 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~   90 (284)
T 2a19_B           12 DFKEIELIGSGGFGQVFKAKHR-IDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRS   90 (284)
T ss_dssp             HEEEEEEEECSSSCCEEEEEET-TTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CC
T ss_pred             ccceeeeeccCCceEEEEEEEc-CCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccccc
Confidence            7899999999999999999985 578899999764          47889999999999998864               


Q ss_pred             -CCeEEEEEEcCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           80 -QECRLLVYKFMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        80 -~~~~~lv~e~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                       ....++||||+++++|.+++...  ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.
T Consensus        91 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  170 (284)
T 2a19_B           91 KTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVT  170 (284)
T ss_dssp             EEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             CcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhhe
Confidence             34579999999999999999754  3333      44566667788888877776     8999999999999999998


Q ss_pred             eeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------CCCccccchHHHHH
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------GSDPKTLEKPVMIA  214 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------~~~~~~~~~~~~l~  214 (266)
                      .....  .......+++.|+|||.+.+..++.++||||||+++|+|++|..|+..           ..+......+.+++
T Consensus       171 ~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  248 (284)
T 2a19_B          171 SLKND--GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLL  248 (284)
T ss_dssp             ESSCC--SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCTTSCHHHHHHH
T ss_pred             ecccc--ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHHHhhcccccccCCHHHHHHH
Confidence            76432  223345689999999999888899999999999999999999987743           22344566788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      .+||+.||.+||++.++++.|..+...++.
T Consensus       249 ~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~  278 (284)
T 2a19_B          249 QKLLSKKPEDRPNTSEILRTLTVWKKSPEK  278 (284)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence            999999999999999999999999876553

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.3e-37  Score=265.04  Aligned_cols=221  Identities=18%  Similarity=0.227  Sum_probs=179.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC------CCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP------GDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIE   79 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~   79 (266)
                      ..++|.+.+.||+|+||.||+|.+..      .++..||+|++.               .+++.+ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            34689999999999999999999742      356789999764               256677 89999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcCC----------------CC------HHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           80 QECRLLVYKFMHNRSISSLLYECLR----------------PT------WQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~----------------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      .+..++||||+++++|.+++.....                +.      +..++..++.++|..+++|+     ||+++.
T Consensus       113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~  192 (334)
T 2pvf_A          113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTE  192 (334)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECT
T ss_pred             CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcC
Confidence            9999999999999999999986432                22      34566677788888877776     899999


Q ss_pred             CCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC---------
Q 042690          133 YFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG---------  201 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~---------  201 (266)
                      ++.++|+|||++......... ......+++.|+|||++.+..++.++||||||+++|+|++ |..||...         
T Consensus       193 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~  272 (334)
T 2pvf_A          193 NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL  272 (334)
T ss_dssp             TCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHH
Confidence            999999999999876432221 2233456788999999888888999999999999999999 88888652         


Q ss_pred             -------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          202 -------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       202 -------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                             .+......+.+++.+||+.||.+||+++++++.|+.+....
T Consensus       273 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~  320 (334)
T 2pvf_A          273 KEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT  320 (334)
T ss_dssp             HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence                   23345567889999999999999999999999999996643

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=8.7e-38  Score=259.38  Aligned_cols=219  Identities=22%  Similarity=0.310  Sum_probs=179.7

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      -..++|.+.+.||+|+||.||+|.+.  ++..||+|.+.             ++++.++||||+++++++. .+..++||
T Consensus        10 v~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~   86 (279)
T 1qpc_A           10 VPRETLKLVERLGAGQFGEVWMGYYN--GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIIT   86 (279)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEET--TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             cCHHhhhheeeecCCCCeEEEEEEEc--CCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEE
Confidence            34568999999999999999999974  56789999764             3788899999999999876 45588999


Q ss_pred             EcCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+++++|.+++....  .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++..........
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T 1qpc_A           87 EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA  166 (279)
T ss_dssp             ECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred             ecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccccc
Confidence            9999999999997532  33      344566667788888887776     8999999999999999998765433333


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~~~c  217 (266)
                      .....++..|+|||.+.+..++.++||||||+++|+|++ |+.||....                +......+.+++.+|
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  246 (279)
T 1qpc_A          167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLC  246 (279)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHH
Confidence            334556788999999988788999999999999999999 888886521                234456788999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          218 VKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      |+.||.+||+++++++.|+.+....
T Consensus       247 l~~~p~~Rps~~~l~~~l~~~~~~~  271 (279)
T 1qpc_A          247 WKERPEDRPTFDYLRSVLEDFFTAT  271 (279)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred             hccChhhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999986543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.7e-37  Score=256.12  Aligned_cols=210  Identities=17%  Similarity=0.240  Sum_probs=173.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC--CeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ--ECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~--~~~   83 (266)
                      ++++|.+.+.||+|+||.||+|.+   .+..+|+|.+.                .+++.++||||+++++++.+.  ...
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~---~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   84 (271)
T 3kmu_A            8 DFKQLNFLTKLNENHSGELWKGRW---QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHP   84 (271)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEE---TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSC
T ss_pred             CHHHhHHHHHhcCCCcceEEEEEE---CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCe
Confidence            467899999999999999999997   47788998764                266778999999999999876  678


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcC--cccc-----ceeecCCCEEEEeecCcceeec
Q 042690           84 LLVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTR--ALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~--~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ++||||+++++|.+++.....  ++      +..++..++.++|..+  ++|+     ||+++.++.++++|||++....
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~  164 (271)
T 3kmu_A           85 TLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ  164 (271)
T ss_dssp             EEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred             EeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence            999999999999999986543  33      3455666667888777  7776     9999999999999998875421


Q ss_pred             cccccccccccCCCCcCCccccCCCCCCc---ccchhhHHHHHHHHHhCCCcccC-----------------CCCccccc
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPVTV---KVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLE  208 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~  208 (266)
                            .....+|+.|+|||.+.+..++.   ++||||||+++|+|++|+.||..                 ..+.....
T Consensus       165 ------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (271)
T 3kmu_A          165 ------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISP  238 (271)
T ss_dssp             ------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTCCH
T ss_pred             ------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCCCH
Confidence                  22356789999999988765444   79999999999999999999965                 12334567


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .+.+++.+||+.||.+||+++++++.|+.+.+
T Consensus       239 ~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          239 HVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            88899999999999999999999999998754

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=2.8e-37  Score=256.65  Aligned_cols=218  Identities=18%  Similarity=0.197  Sum_probs=173.8

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||.||+|.+..  +.+..||+|.+.               .+++.++||||+++++++.. +..+
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~   88 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW   88 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence            34689999999999999999999752  345568998754               36778899999999999764 4568


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+.+++|.+++..... ++      +..++..++.++|.++++|+     ||+++.++.++|+|||++........
T Consensus        89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  168 (281)
T 3cc6_A           89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDY  168 (281)
T ss_dssp             EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-----
T ss_pred             EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccc
Confidence            99999999999999976432 33      34566667788888888877     89999999999999999987653333


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHH
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAI  215 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~  215 (266)
                      .......+++.|+|||.+.+..++.++||||||+++|+|+| |+.||...                .+......+.+++.
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  248 (281)
T 3cc6_A          169 YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVLYTLMT  248 (281)
T ss_dssp             ----CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHHHHHHH
T ss_pred             cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence            33334556788999999988889999999999999999998 99998541                22334567889999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +||+.||.+||++.++++.|+.+..
T Consensus       249 ~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          249 RCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHccCCchhCcCHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=260.84  Aligned_cols=209  Identities=18%  Similarity=0.219  Sum_probs=167.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++...+..++|
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNR-DTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeC-CCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEE
Confidence            357999999999999999999986 568899999652                478889999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |||+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ....
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~  159 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGP-SDYY  159 (311)
T ss_dssp             EECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-------
T ss_pred             EEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCc-cccc
Confidence            99999999999987665544      34556667788888887776     899999999999999999875422 2223


Q ss_pred             ccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------------
Q 042690          156 TGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------------  203 (266)
                      ....+|..|+|||.+.+ ..++.++||||||+++|+|++|+.||.....                               
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (311)
T 4agu_A          160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGV  239 (311)
T ss_dssp             ------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTC
T ss_pred             CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccC
Confidence            34568999999998875 5689999999999999999999999865221                               


Q ss_pred             ---------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                     +.....+.+++.+||+.||.+|||++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          240 KIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             CCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence                           123445778999999999999999999985

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.6e-37  Score=263.15  Aligned_cols=222  Identities=19%  Similarity=0.257  Sum_probs=166.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCc--ceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDK--TNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~--~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ...+|.+.+.||+|+||.||+|.+....+  ..||+|.+.                .+++.++||||+++++++......
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            44689999999999999999999752222  278999764                367788999999999999876654


Q ss_pred             ------EEEEEcCCCCCHHHHHhhcC------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEee
Q 042690           84 ------LLVYKFMHNRSISSLLYECL------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSD  140 (266)
Q Consensus        84 ------~lv~e~~~~~~L~~~l~~~~------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~D  140 (266)
                            ++||||+.+++|.+++....      .+      .+..++..++.++|..+++|+     ||+++.++.++|+|
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~D  180 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVAD  180 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECC
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEee
Confidence                  89999999999999996432      23      345566677788888888877     89999999999999


Q ss_pred             cCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CC
Q 042690          141 LGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GS  202 (266)
Q Consensus       141 fg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~  202 (266)
                      ||++......... ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||..                ..
T Consensus       181 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~  260 (323)
T 3qup_A          181 FGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQ  260 (323)
T ss_dssp             CCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCC
T ss_pred             ccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCCCCC
Confidence            9999875432222 2223456778999999988889999999999999999999 8888865                22


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      ++.....+.+++.+||+.||.+||++.++++.|+.+...+.
T Consensus       261 ~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          261 PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence            34456788899999999999999999999999999987764

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=2e-37  Score=258.62  Aligned_cols=207  Identities=19%  Similarity=0.268  Sum_probs=166.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++|.+.+.||+|+||.||+|.+  .+++.+|+|++.                .+++.++||||+++++++.+.+..++|
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv   78 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQN--NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLV   78 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEE--TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEE
T ss_pred             CccchhhhhcccCCCEEEEEEEc--CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEE
Confidence            36899999999999999999998  467889999763                377888999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+.+ +|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.+||+|||++...... ...
T Consensus        79 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~  156 (288)
T 1ob3_A           79 FEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP-VRK  156 (288)
T ss_dssp             EECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             EEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc-ccc
Confidence            999986 999998754 3333      44567777788888888887     899999999999999999765321 222


Q ss_pred             cccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC------------------------------
Q 042690          155 LTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------------------  203 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------------------  203 (266)
                      .....+|+.|+|||++.+. .++.++||||||+++|+|++|+.||.....                              
T Consensus       157 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T 1ob3_A          157 YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDP  236 (288)
T ss_dssp             -----CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccccc
Confidence            2345679999999988754 589999999999999999999999864210                              


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    ......+.+++.+||+.||.+||+++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          237 NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                          123456678999999999999999999875

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=259.85  Aligned_cols=211  Identities=18%  Similarity=0.277  Sum_probs=167.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ++++|.+.+.||+|+||.||++.+   .+..||+|.+.            .+++.++||||+++++++.  +..++||||
T Consensus         6 ~~~~~~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~   80 (307)
T 2eva_A            6 DYKEIEVEEVVGRGAFGVVCKAKW---RAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEY   80 (307)
T ss_dssp             CGGGEEEEEEEECCSSSEEEEEEE---TTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEEC
T ss_pred             CHhHeeeeeEeecCCCceEEEEEE---CCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEc
Confidence            567899999999999999999997   46789999874            3778889999999999876  347899999


Q ss_pred             CCCCCHHHHHhhcCC---C------CHHHHHHHHHHHhhh---cCcccc-----ceeecCCCE-EEEeecCcceeecccc
Q 042690           90 MHNRSISSLLYECLR---P------TWQQRMQDCIRDCWR---TRALAC-----RILLHDYFT-VETSDLGLAKLLMINQ  151 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~---~------~~~~~l~~~~~~~~~---~~~~h~-----nili~~~~~-~~l~Dfg~a~~~~~~~  151 (266)
                      +++++|.+++.....   +      .+..++..++.++|.   .+++|+     ||+++.++. +||+|||++.....  
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~--  158 (307)
T 2eva_A           81 AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT--  158 (307)
T ss_dssp             CTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--------
T ss_pred             CCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc--
Confidence            999999999986543   2      233455566777777   667776     899988875 79999999976432  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMI  213 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l  213 (266)
                        ......||..|+|||++.+..++.++||||||+++|+|++|+.||....                  .......+.++
T Consensus       159 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (307)
T 2eva_A          159 --HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESL  236 (307)
T ss_dssp             --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHH
T ss_pred             --ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHH
Confidence              1223458999999999998889999999999999999999999986421                  12345677899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      +.+||+.||.+||+++++++.|+.+.+.
T Consensus       237 i~~~l~~dp~~Rps~~ell~~L~~~~~~  264 (307)
T 2eva_A          237 MTRCWSKDPSQRPSMEEIVKIMTHLMRY  264 (307)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHGGG
T ss_pred             HHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=270.87  Aligned_cols=211  Identities=17%  Similarity=0.121  Sum_probs=174.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      -..++|.+.+.||+|+||.||++.++ .+++.||+|++.                 .++..++||||+++++++.+.+..
T Consensus        58 ~~~~~f~~~~~lG~G~fG~V~~~~~~-~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~  136 (412)
T 2vd5_A           58 LQRDDFEILKVIGRGAFSEVAVVKMK-QTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYL  136 (412)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEE
T ss_pred             CChhhEEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEE
Confidence            34578999999999999999999986 678899999764                 266788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |+||||+++|+|.+++.... .+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||+++......
T Consensus       137 ~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~  216 (412)
T 2vd5_A          137 YLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG  216 (412)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTS
T ss_pred             EEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCC
Confidence            99999999999999998643 443      44566677788888888887     9999999999999999998765433


Q ss_pred             ccccccccCCCCcCCccccC-------CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------C---c
Q 042690          152 TQTLTGMRETKGYLPPEWFR-------NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------D---P  204 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~---~  204 (266)
                      ........||+.|+|||++.       +..++.++|+|||||++|||++|+.||....                 +   .
T Consensus       217 ~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~  296 (412)
T 2vd5_A          217 TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDE  296 (412)
T ss_dssp             CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----
T ss_pred             ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCcccc
Confidence            33334567999999999886       3568899999999999999999999997622                 1   2


Q ss_pred             cccchHHHHHHHhhhcCCCCC---CCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLR---PSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~R---ps~~~il~  233 (266)
                      ..+..+.+++.+||. +|.+|   |+++|+++
T Consensus       297 ~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          297 GVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             CCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            355678899999999 99998   68888864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=255.93  Aligned_cols=210  Identities=19%  Similarity=0.235  Sum_probs=155.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+++|.+.+.||+|+||.||+|.+. .+++.||+|.+.                 .+++.++||||+++++++.+.+..+
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   87 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESI-HTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVY   87 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEc-cCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEE
Confidence            4678999999999999999999975 578889999763                 2666889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++....... 
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-  166 (278)
T 3cok_A           88 LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH-  166 (278)
T ss_dssp             EEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred             EEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC-
Confidence            999999999999999864 3333      44566667788887777776     8999999999999999998754221 


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------CccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~~~~~~~~~l~~~c  217 (266)
                      .......+++.|+|||.+.+..++.++|+||||+++|+|++|+.||....               +......+.+++.+|
T Consensus       167 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  246 (278)
T 3cok_A          167 EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQL  246 (278)
T ss_dssp             -------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHHHHH
T ss_pred             CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHHHHH
Confidence            22233568999999999988889999999999999999999999987522               223456778999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.||.+||+++++++
T Consensus       247 l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          247 LRRNPADRLSLSSVLD  262 (278)
T ss_dssp             SCSSGGGSCCHHHHTT
T ss_pred             cccCHhhCCCHHHHhc
Confidence            9999999999999875

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=2.5e-37  Score=269.52  Aligned_cols=209  Identities=15%  Similarity=0.147  Sum_probs=165.2

Q ss_pred             cCceeee-eccCCCcceEEEEEEEcCCCcceeeeeeHH---------HH-hhhcCCCceeeeeeEEEe----CCeEEEEE
Q 042690           23 FSHIYSL-KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------KV-VHVAHHKNLVCLLGYHIE----QECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~-~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------~~-l~~~~h~~iv~~~~~~~~----~~~~~lv~   87 (266)
                      +.+|++. +.||+|+||+||++.++ .++..||+|++.         .+ .+..+||||+++++++..    ....++||
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~-~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~  138 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNK-RTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVM  138 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEEC-CCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEE
Confidence            4567776 68999999999999976 678899999874         12 355689999999999876    55689999


Q ss_pred             EcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeecccc
Q 042690           88 KFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ||+++|+|.+++....  .++      +..++..++.++|.++++|+     ||+++.   ++.+||+|||+++....  
T Consensus       139 E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~--  216 (400)
T 1nxk_A          139 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS--  216 (400)
T ss_dssp             ECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC---
T ss_pred             EeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCC--
Confidence            9999999999998643  233      44566667788888888887     899997   78999999999986542  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccccc
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTLE  208 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~~  208 (266)
                      ........||+.|+|||++.+..++.++|||||||++|+|++|..||.....                       .....
T Consensus       217 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  296 (400)
T 1nxk_A          217 HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE  296 (400)
T ss_dssp             ----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCH
T ss_pred             CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCH
Confidence            2223346689999999999988999999999999999999999999965221                       23456


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+.+++.+||+.||.+||+++++++.
T Consensus       297 ~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          297 EVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             HHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            78899999999999999999999864

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=262.63  Aligned_cols=218  Identities=20%  Similarity=0.257  Sum_probs=171.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcce----eeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTN----IGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~----vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++..    +++|.+.               .+++.++||||+++++++..+. .
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~-~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~   91 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWI-PEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V   91 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEEC-CTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEc-CCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence            468999999999999999999976 34444    4666442               3778899999999999998765 7


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++++||+.+++|.+++.... .+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++.......
T Consensus        92 ~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             EEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC--------
T ss_pred             eEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCcc
Confidence            79999999999999997643 23      345667777788888888887     9999999999999999998764322


Q ss_pred             cc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHH
Q 042690          152 TQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMI  213 (266)
Q Consensus       152 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l  213 (266)
                      .. ......++..|+|||++.+..++.++||||||+++|+|++ |..||...                .+......+.++
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  251 (327)
T 3lzb_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMI  251 (327)
T ss_dssp             --------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHH
T ss_pred             ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHH
Confidence            22 2233456778999999988889999999999999999999 99998752                233456678899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +.+||+.||.+||++.++++.|+.+...+
T Consensus       252 i~~~l~~dp~~Rps~~ell~~L~~~~~~~  280 (327)
T 3lzb_A          252 MRKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred             HHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence            99999999999999999999999997654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=9.4e-38  Score=265.14  Aligned_cols=203  Identities=17%  Similarity=0.203  Sum_probs=150.6

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC-CCceeeeeeEEEeCCeEEEEEEcCCCCCHH
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH-HKNLVCLLGYHIEQECRLLVYKFMHNRSIS   96 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   96 (266)
                      .+.||+|+||.||++.++ .+++.||+|++.           .+++.+. ||||+++++++.++...++||||+++++|.
T Consensus        16 ~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~   94 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHK-KSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELF   94 (325)
T ss_dssp             SCCSEEETTEEEEEEEET-TTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHH
T ss_pred             CCccccCCCeEEEEEEEC-CCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHH
Confidence            378999999999999986 678899999865           2566676 999999999999999999999999999999


Q ss_pred             HHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecCcceeeccccccccccccCCC
Q 042690           97 SLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLGLAKLLMINQTQTLTGMRETK  162 (266)
Q Consensus        97 ~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg~a~~~~~~~~~~~~~~~~~~  162 (266)
                      +++.....++      +..++..++.++|..+++|+     ||+++.++   .++|+|||++..... .........+|+
T Consensus        95 ~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~~t~  173 (325)
T 3kn6_A           95 ERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP-DNQPLKTPCFTL  173 (325)
T ss_dssp             HHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------------
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCC-CCCcccccCCCc
Confidence            9998766654      44556666788888887776     89998766   899999999986542 222334456799


Q ss_pred             CcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------ccccchHHHHHHH
Q 042690          163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------~~~~~~~~~l~~~  216 (266)
                      .|+|||.+.+..++.++||||||+++|+|++|+.||.....                          ......+.+++.+
T Consensus       174 ~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  253 (325)
T 3kn6_A          174 HYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQG  253 (325)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHH
T ss_pred             CccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHH
Confidence            99999999988999999999999999999999999965211                          1245678889999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+||+++++++
T Consensus       254 ~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          254 LLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             HHCCCTTTCCCTTTSTT
T ss_pred             HCCCChhHCCCHHHHhc
Confidence            99999999999999874

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=263.66  Aligned_cols=222  Identities=18%  Similarity=0.200  Sum_probs=171.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HH--hhhcCCCceeeeeeEEEe-----CCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KV--VHVAHHKNLVCLLGYHIE-----QECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~--l~~~~h~~iv~~~~~~~~-----~~~~   83 (266)
                      ++++|.+.+.||+|+||.||+|.+   ++..||+|++.           ++  ++.++||||+++++.+..     ...+
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~---~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   87 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL---DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY   87 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE---TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             ChHHhheeeecccCCCeEEEEEEE---CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence            567999999999999999999986   67899999864           12  335789999999986643     2357


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhc---------Ccccc-----ceeecCCCEEEEeecCcc
Q 042690           84 LLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRT---------RALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~---------~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                      ++||||+++++|.+++.....     ..+..++..++.++|..         +++|+     ||+++.++.+||+|||++
T Consensus        88 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a  167 (336)
T 3g2f_A           88 LLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLS  167 (336)
T ss_dssp             EEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTC
T ss_pred             EEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccce
Confidence            899999999999999975433     23455666677777777         77776     999999999999999999


Q ss_pred             eeecccc-------ccccccccCCCCcCCccccCC-------CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------
Q 042690          145 KLLMINQ-------TQTLTGMRETKGYLPPEWFRN-------MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------  203 (266)
Q Consensus       145 ~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------  203 (266)
                      .......       ........||+.|+|||++.+       ..++.++|||||||++|+|++|..|+.....       
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~  247 (336)
T 3g2f_A          168 MRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMA  247 (336)
T ss_dssp             EECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCT
T ss_pred             eecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHh
Confidence            8754221       112234568999999999876       3466789999999999999999776543111       


Q ss_pred             ------------------------c----------cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 042690          204 ------------------------P----------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPC  246 (266)
Q Consensus       204 ------------------------~----------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~~~  246 (266)
                                              +          .....+.+++.+||+.||.+|||+.++++.|+.+...-....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          248 FQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             THHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             hhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence                                    0          012258899999999999999999999999999987654433

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.5e-37  Score=268.24  Aligned_cols=208  Identities=14%  Similarity=0.174  Sum_probs=173.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .+.|.+.+.||+|+||.||+|.+. .++..+|+|.+.              .+++.++||||+++++++.+....++|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEK-ATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEEC-CCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence            347999999999999999999986 678889998753              37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC--CCEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD--YFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~--~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.  ++.++|+|||++......  ..
T Consensus       129 ~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~--~~  206 (387)
T 1kob_A          129 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD--EI  206 (387)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT--SC
T ss_pred             cCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCC--cc
Confidence            999999999997543 333      44566677788888888776     899974  578999999999876432  22


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~  215 (266)
                      .....+|+.|+|||++.+..++.++|||||||++|+|++|..||....                   .......+.+++.
T Consensus       207 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  286 (387)
T 1kob_A          207 VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIK  286 (387)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHH
T ss_pred             eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHH
Confidence            233468999999999998889999999999999999999999997522                   1234567889999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+||++.++++
T Consensus       287 ~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          287 NLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             TTSCSSGGGSCCHHHHHT
T ss_pred             HHcCCChhHCcCHHHHhh
Confidence            999999999999999986

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.1e-37  Score=262.01  Aligned_cols=221  Identities=19%  Similarity=0.285  Sum_probs=173.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+.|.+.+.||+|+||.||+|.+....   +..||+|.+.               .+++.++||||+++++++...+..+
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            457889999999999999999975322   3458998764               3677889999999999999989999


Q ss_pred             EEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus       123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  202 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE  202 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccc
Confidence            999999999999999764 3343      44556666788888777776     89999999999999999987643222


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHH
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMI  213 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l  213 (266)
                      .  ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||..                ..+......+.++
T Consensus       203 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  282 (333)
T 1mqb_A          203 ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQL  282 (333)
T ss_dssp             --------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHH
T ss_pred             cccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHHHHH
Confidence            1  2223445778999999988889999999999999999999 9999864                1233456678899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +.+||+.||.+||++.++++.|+.+...+.
T Consensus       283 i~~~l~~~p~~Rps~~~l~~~L~~~~~~~~  312 (333)
T 1mqb_A          283 MMQCWQQERARRPKFADIVSILDKLIRAPD  312 (333)
T ss_dssp             HHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence            999999999999999999999999877654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.2e-37  Score=262.72  Aligned_cols=217  Identities=16%  Similarity=0.150  Sum_probs=167.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCC----e
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQE----C   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~----~   82 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|++.                 .+++.++||||+++++++....    .
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDL-RDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEEC-CCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            37999999999999999999975 678899999764                 2555778999999999987654    3


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .++||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.......
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  170 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG  170 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-------
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc
Confidence            489999999999999998766544      44556666788888888877     8999999999999999998654322


Q ss_pred             c--cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchH
Q 042690          152 T--QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKP  210 (266)
Q Consensus       152 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~  210 (266)
                      .  .......||+.|+|||++.+..++.++||||||+++|+|+||+.||.....                   ......+
T Consensus       171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  250 (311)
T 3ork_A          171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADL  250 (311)
T ss_dssp             -----------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHH
T ss_pred             cccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHH
Confidence            2  122335689999999999988999999999999999999999999975321                   1245668


Q ss_pred             HHHHHHhhhcCCCCCCCHHH-HHHHHHHHHhC
Q 042690          211 VMIAIQFVKEKPPLRPSLRI-VALMLQSILEV  241 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~-il~~l~~~~~~  241 (266)
                      .+++.+||+.||.+||++.+ +...+......
T Consensus       251 ~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~  282 (311)
T 3ork_A          251 DAVVLKALAKNPENRYQTAAEMRADLVRVHNG  282 (311)
T ss_dssp             HHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence            89999999999999996554 45666666443

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.7e-37  Score=261.38  Aligned_cols=209  Identities=20%  Similarity=0.291  Sum_probs=156.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ..++|.+.+.||+|+||.||+|.+. .++..||+|++.               .+++.++||||+++++++.+++..++|
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   81 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNK-TTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV   81 (317)
T ss_dssp             ----------------CEEEEEECS-SSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred             cccceeEeeEECCCCCEEEEEEEEC-CCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence            3468999999999999999999975 578899999764               377888999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcC------CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           87 YKFMHNRSISSLLYECL------RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~------~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      |||+.+ +|.+++....      .+.      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....
T Consensus        82 ~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           82 FEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             EECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred             EEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence            999985 9999987532      233      33466777788888888777     89999999999999999987542


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      . ........+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||.....                         
T Consensus       161 ~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          161 P-VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             C-CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred             C-cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhh
Confidence            2 223334568999999998876 4589999999999999999999999864211                         


Q ss_pred             ------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                              ......+.+++.+||+.||.+|||++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence                                    023346789999999999999999999875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4e-37  Score=261.80  Aligned_cols=217  Identities=19%  Similarity=0.223  Sum_probs=170.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhh--hcCCCceeeeeeEEEeC----CeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVH--VAHHKNLVCLLGYHIEQ----ECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~--~~~h~~iv~~~~~~~~~----~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+   .+..||+|++.           +++.  .++||||+++++++...    ...++|
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv  113 (337)
T 3mdy_A           37 KQIQMVKQIGKGRYGEVWMGKW---RGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLI  113 (337)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEE---TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEE
T ss_pred             cceEEEeEeecCCCeEEEEEEE---CCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEE
Confidence            4799999999999999999997   47889999864           1333  34899999999999887    688999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhc--------Ccccc-----ceeecCCCEEEEeecCcceee
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRT--------RALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~--------~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      |||+++++|.+++... .+.      +..++..++.++|..        +++|+     ||+++.++.+||+|||++...
T Consensus       114 ~e~~~~g~L~~~l~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~  192 (337)
T 3mdy_A          114 TDYHENGSLYDYLKST-TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKF  192 (337)
T ss_dssp             ECCCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EeccCCCcHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceee
Confidence            9999999999999753 333      445556666777766        66665     999999999999999999765


Q ss_pred             cccccc---ccccccCCCCcCCccccCCCCCCcc------cchhhHHHHHHHHHhC----------CCcccCCCC-----
Q 042690          148 MINQTQ---TLTGMRETKGYLPPEWFRNMPVTVK------VDVYSFGVMLLEIISC----------RCVERQGSD-----  203 (266)
Q Consensus       148 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~------~Di~slG~i~~~l~tg----------~~p~~~~~~-----  203 (266)
                      ......   ......||+.|+|||++.+...+..      +||||||+++|+|+||          +.||.....     
T Consensus       193 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~  272 (337)
T 3mdy_A          193 ISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSY  272 (337)
T ss_dssp             C---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             ccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCch
Confidence            432222   1224578999999999887665554      9999999999999999          556643110     


Q ss_pred             ----------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          204 ----------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       204 ----------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                                            ......+.+++.+||+.||.+||++.++++.|+.+.+....
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~  335 (337)
T 3mdy_A          273 EDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQDI  335 (337)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTTC
T ss_pred             hhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhccc
Confidence                                  12334578899999999999999999999999999887654

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1e-36  Score=253.65  Aligned_cols=215  Identities=18%  Similarity=0.217  Sum_probs=179.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..++|.+.+.||+|+||.||+|.+. .++..+|+|.+.                 ++++.++||||+++++++.+.+..+
T Consensus        12 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           12 TIDDFDIGRPLGKGKFGNVYLAREK-QNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIY   90 (284)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhceeeheecCCCCeEEEEEEEc-CCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEE
Confidence            3568999999999999999999975 677889999762                 3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....   .
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~---~  167 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPS---L  167 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSS---S
T ss_pred             EEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcc---c
Confidence            9999999999999998765544      44566667788888887776     89999999999999999976532   2


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......++..|+|||.+.+..++.++|+||||+++|+|++|..||...               .++.....+.+++.+||
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  247 (284)
T 2vgo_A          168 RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLISKLL  247 (284)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHS
T ss_pred             ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHHHHHh
Confidence            223456899999999999888999999999999999999999999652               23445677889999999


Q ss_pred             hcCCCCCCCHHHHHH--HHHHHHh
Q 042690          219 KEKPPLRPSLRIVAL--MLQSILE  240 (266)
Q Consensus       219 ~~~p~~Rps~~~il~--~l~~~~~  240 (266)
                      +.||.+||+++++++  .++....
T Consensus       248 ~~~p~~Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          248 RYHPPQRLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             CSSGGGSCCHHHHHTCHHHHHHCC
T ss_pred             hcCHhhCCCHHHHhhCHHHHhhcc
Confidence            999999999999985  4444433

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=8.6e-37  Score=254.39  Aligned_cols=208  Identities=20%  Similarity=0.223  Sum_probs=170.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..||+|.+.                     .+++.++||||+++++++.+..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLV-KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEET-TTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT
T ss_pred             hccceehhccccCCceeEEEEEEc-CCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC
Confidence            458999999999999999999986 678889999762                     3677889999999999986554


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcC--cccc-----ceeecCCCE-----EEEeecC
Q 042690           82 CRLLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTR--ALAC-----RILLHDYFT-----VETSDLG  142 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~--~~h~-----nili~~~~~-----~~l~Dfg  142 (266)
                        ++||||+++++|.+++.... .+.      +..++..++.++|.++  ++|+     ||+++.++.     ++|+|||
T Consensus        97 --~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg  174 (287)
T 4f0f_A           97 --RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG  174 (287)
T ss_dssp             --EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred             --eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence              69999999999999886543 333      4455666778888888  8876     899988776     9999999


Q ss_pred             cceeeccccccccccccCCCCcCCccccC--CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------
Q 042690          143 LAKLLMINQTQTLTGMRETKGYLPPEWFR--NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------  202 (266)
Q Consensus       143 ~a~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------  202 (266)
                      ++....    .......+|+.|+|||++.  ...++.++||||||+++|+|++|+.||....                  
T Consensus       175 ~~~~~~----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  250 (287)
T 4f0f_A          175 LSQQSV----HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPT  250 (287)
T ss_dssp             TCBCCS----SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCC
T ss_pred             cccccc----ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCC
Confidence            997543    2233466899999999884  4457889999999999999999999996521                  


Q ss_pred             -CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 042690          203 -DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       203 -~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~  237 (266)
                       +......+.+++.+||+.||.+||+++++++.|+.
T Consensus       251 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          251 IPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             CCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence             23345678899999999999999999999999975

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=262.64  Aligned_cols=215  Identities=19%  Similarity=0.291  Sum_probs=170.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +++|.+.+.||+|+||.||+|.+. .++..||+|++.               .+++.++||||+++++++.+.+..++||
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSK-LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCceEEEEEEcCCCCEEEEEEEEC-CCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence            368999999999999999999986 678889999664               4788899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+.+ +|.+++..... +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++..... .....
T Consensus        80 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~-~~~~~  157 (324)
T 3mtl_A           80 EYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSI-PTKTY  157 (324)
T ss_dssp             ECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC--------
T ss_pred             ccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccC-Ccccc
Confidence            99975 99999876543 33      44566777788888887776     99999999999999999986542 22233


Q ss_pred             ccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------------
Q 042690          156 TGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------------  203 (266)
                      ....+|+.|+|||.+.+ ..++.++||||||+++|+|++|+.||.....                               
T Consensus       158 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (324)
T 3mtl_A          158 DNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTY  237 (324)
T ss_dssp             -----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHT
T ss_pred             ccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhccc
Confidence            34567999999998876 5689999999999999999999999965221                               


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH--HHHHHHh
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL--MLQSILE  240 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~  240 (266)
                                    +.....+.+++.+||+.||.+|||++|+++  .+..+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  290 (324)
T 3mtl_A          238 NYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGE  290 (324)
T ss_dssp             CCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCS
T ss_pred             ccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhccc
Confidence                          112345678999999999999999999986  3554433

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=259.17  Aligned_cols=205  Identities=16%  Similarity=0.142  Sum_probs=165.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------HhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ..|.+.++||+|+||+||+|.+. .++..||+|++..                 ..+..+||||+++++++.+.+..++|
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSK-EDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET-TTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEEC-CCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence            46999999999999999999986 6788999997631                 22344899999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           87 YKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||+ +++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....  ...
T Consensus       136 ~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~--~~~  212 (311)
T 3p1a_A          136 TELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT--AGA  212 (311)
T ss_dssp             EECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC------
T ss_pred             Eecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeeccc--CCC
Confidence            9999 5699998876443 44      44566667788887777776     99999999999999999987542  222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------CccccchHHHHHHHhhhc
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------~~~~~~~~~~l~~~cl~~  220 (266)
                      .....||+.|+|||++.+ .++.++||||||+++|+|++|..|+....              .......+.+++.+||+.
T Consensus       213 ~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  291 (311)
T 3p1a_A          213 GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEP  291 (311)
T ss_dssp             --CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCS
T ss_pred             CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHHHHcCC
Confidence            334568999999998876 78999999999999999999977654411              123456788999999999


Q ss_pred             CCCCCCCHHHHHH
Q 042690          221 KPPLRPSLRIVAL  233 (266)
Q Consensus       221 ~p~~Rps~~~il~  233 (266)
                      ||.+||+++++++
T Consensus       292 dP~~Rpt~~ell~  304 (311)
T 3p1a_A          292 DPKLRATAEALLA  304 (311)
T ss_dssp             STTTSCCHHHHHT
T ss_pred             ChhhCcCHHHHHh
Confidence            9999999999986

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=258.48  Aligned_cols=212  Identities=15%  Similarity=0.148  Sum_probs=172.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC--eEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE--CRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~--~~~lv   86 (266)
                      ..|.+.+.||+|+||.||+|.+. .+++.||+|++.               ++++.++||||+++++++....  ..++|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHK-KTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEEC-CCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence            47999999999999999999986 568899999754               3788999999999999998765  78999


Q ss_pred             EEcCCCCCHHHHHhhcCC---CC------HHHHHHHHHHHhhhcCcccc-----ceee----cCCCEEEEeecCcceeec
Q 042690           87 YKFMHNRSISSLLYECLR---PT------WQQRMQDCIRDCWRTRALAC-----RILL----HDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~---~~------~~~~l~~~~~~~~~~~~~h~-----nili----~~~~~~~l~Dfg~a~~~~  148 (266)
                      |||+++++|.+++.....   +.      +..++..++.++|..+++|+     ||++    +.++.+||+|||++....
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~  167 (319)
T 4euu_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (319)
T ss_dssp             EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECC
T ss_pred             EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecC
Confidence            999999999999986432   33      44566667788887777776     8998    788899999999998764


Q ss_pred             cccccccccccCCCCcCCccccC--------CCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFR--------NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------  203 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------  203 (266)
                      ..  .......+|..|+|||++.        +..++.++|||||||++|+|+||+.||.....                 
T Consensus       168 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~  245 (319)
T 4euu_A          168 DD--EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPS  245 (319)
T ss_dssp             TT--CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCT
T ss_pred             CC--CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCc
Confidence            32  2333456899999999875        56789999999999999999999999963111                 


Q ss_pred             ---------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          204 ---------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       204 ---------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                                                 ......+.+++.+||+.||.+||+++|+++.....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~  307 (319)
T 4euu_A          246 GAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI  307 (319)
T ss_dssp             TCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred             ccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence                                       11233567899999999999999999999887654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.8e-37  Score=262.49  Aligned_cols=213  Identities=16%  Similarity=0.165  Sum_probs=174.6

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH------------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD------------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~------------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      ...+|.+.+.||+|+||.||++....  .++..||+|++.                  .+++.+ +||||+++++++...
T Consensus        52 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  131 (355)
T 1vzo_A           52 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE  131 (355)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET
T ss_pred             cccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC
Confidence            34689999999999999999999742  478889999764                  366677 699999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +..++||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||+++....
T Consensus       132 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~  211 (355)
T 1vzo_A          132 TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA  211 (355)
T ss_dssp             TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCG
T ss_pred             ceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeeccc
Confidence            99999999999999999998766654      33456666788888888777     99999999999999999987654


Q ss_pred             ccccccccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhCCCcccCC-------------------CCccccc
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISCRCVERQG-------------------SDPKTLE  208 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------------~~~~~~~  208 (266)
                      ..........||+.|+|||++.+.  .++.++||||||+++|+|++|+.||...                   .+.....
T Consensus       212 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (355)
T 1vzo_A          212 DETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSA  291 (355)
T ss_dssp             GGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCH
T ss_pred             CCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCcccCH
Confidence            444444456789999999998753  4788999999999999999999999642                   1233455


Q ss_pred             hHHHHHHHhhhcCCCCCC-----CHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRP-----SLRIVALM  234 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rp-----s~~~il~~  234 (266)
                      .+.+++.+||+.||.+||     +++++++.
T Consensus       292 ~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          292 LAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             HHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             HHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence            678899999999999999     88988754

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=4.4e-37  Score=260.97  Aligned_cols=219  Identities=20%  Similarity=0.241  Sum_probs=177.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcc--eeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKT--NIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~--~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      ++++|.+.+.||+|+||.||+|.+. .++.  .+++|.+.               ++++.+ +||||+++++++.+.+..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           23 DWNDIKFQDVIGEGNFGQVLKARIK-KDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL  101 (327)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEE-ETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             cHHHccceeeeecCCCceEEEEEEc-cCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCce
Confidence            4678999999999999999999975 3444  34787654               367788 899999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEE
Q 042690           84 LLVYKFMHNRSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~  136 (266)
                      ++||||+++++|.+++....                .+      .+..++..++.++|..+++|+     ||+++.++.+
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~  181 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVA  181 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCE
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeE
Confidence            99999999999999997643                23      344566667788888877776     8999999999


Q ss_pred             EEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC--------------
Q 042690          137 ETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG--------------  201 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~--------------  201 (266)
                      +|+|||++.....  ........++..|+|||.+.+..++.++||||||+++|+|+| |..||...              
T Consensus       182 kL~Dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~  259 (327)
T 1fvr_A          182 KIADFGLSRGQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR  259 (327)
T ss_dssp             EECCTTCEESSCE--ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCC
T ss_pred             EEcccCcCccccc--cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCC
Confidence            9999999975321  112223446788999999988888999999999999999998 99998652              


Q ss_pred             --CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          202 --SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       202 --~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                        .+......+.+++.+||+.||.+||+++++++.|+.+.+...
T Consensus       260 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          260 LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence              233455678899999999999999999999999999977644

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.2e-37  Score=262.13  Aligned_cols=209  Identities=13%  Similarity=0.101  Sum_probs=169.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..+|+|++.                   .+++.++||||+++++++.+.+..+
T Consensus        26 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~  104 (345)
T 3hko_A           26 KKYHLKGAIGQGSYGVVRVAIEN-QTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYIC  104 (345)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hheeecceeeecCCeEEEEEEEC-CCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEE
Confidence            47999999999999999999975 678889999642                   3778899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC----------------------------------------------CCCHHHHHHHHHHHh
Q 042690           85 LVYKFMHNRSISSLLYECL----------------------------------------------RPTWQQRMQDCIRDC  118 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~----------------------------------------------~~~~~~~l~~~~~~~  118 (266)
                      +||||+++++|.+++....                                              ...+..++..++.++
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L  184 (345)
T 3hko_A          105 LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYL  184 (345)
T ss_dssp             EEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999985210                                              012556777777888


Q ss_pred             hhcCcccc-----ceeecCCC--EEEEeecCcceeecccccc---ccccccCCCCcCCccccCC--CCCCcccchhhHHH
Q 042690          119 WRTRALAC-----RILLHDYF--TVETSDLGLAKLLMINQTQ---TLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGV  186 (266)
Q Consensus       119 ~~~~~~h~-----nili~~~~--~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~  186 (266)
                      |..+++|+     ||+++.++  .++|+|||++.........   ......+|+.|+|||.+.+  ..++.++||||||+
T Consensus       185 H~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          185 HNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             HHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             HHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence            88887777     89998776  8999999999875432211   2345678999999998865  56889999999999


Q ss_pred             HHHHHHhCCCcccCCC-------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          187 MLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       187 i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++|+|++|+.||....                   .......+.+++.+||+.||.+||++.++++
T Consensus       265 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          265 LLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            9999999999996511                   1124567889999999999999999999986

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=9.8e-38  Score=260.23  Aligned_cols=216  Identities=20%  Similarity=0.248  Sum_probs=173.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCC------cceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGD------KTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~------~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      .++|.+.+.||+|+||.||+|.+....      +..|++|.+.              .+++.++||||+++++++.+++.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            458999999999999999999975222      2568998763              37788999999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE--------EEEeecC
Q 042690           83 RLLVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT--------VETSDLG  142 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~--------~~l~Dfg  142 (266)
                      .++||||+++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.        ++|+|||
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg  166 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPG  166 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCC
T ss_pred             CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCc
Confidence            9999999999999999986543 33      44566677788888888877     899998887        9999999


Q ss_pred             cceeeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccc
Q 042690          143 LAKLLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKT  206 (266)
Q Consensus       143 ~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~  206 (266)
                      ++......     ....++..|+|||++.+ ..++.++||||||+++|+|++|..|+..               ..+...
T Consensus       167 ~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (289)
T 4fvq_A          167 ISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPK  241 (289)
T ss_dssp             SCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCS
T ss_pred             ccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCCCCC
Confidence            98654321     12346888999998877 6689999999999999999996654433               223445


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      ...+.+++.+||+.||.+||+++++++.|+.+..+..
T Consensus       242 ~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          242 AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence            6788999999999999999999999999999877543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=8.6e-37  Score=253.90  Aligned_cols=207  Identities=18%  Similarity=0.218  Sum_probs=173.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++..++..++||
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            6 DNYDVKEELGKGAFSVVRRCVHK-TTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhcCcCCeEEEEEEEc-CCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            47999999999999999999976 678889999753                3678899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE---EEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT---VETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~---~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.   ++|+|||++.....  ..
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~--~~  162 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND--SE  162 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS--SC
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc--Cc
Confidence            9999999999988765543      44566667788887777776     899986655   99999999987542  22


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~  214 (266)
                      ......+++.|+|||.+.+..++.++||||||+++|+|++|..||....                   .......+.+++
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  242 (284)
T 3kk8_A          163 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLI  242 (284)
T ss_dssp             BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHH
T ss_pred             cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHH
Confidence            2334668999999999999889999999999999999999999986511                   124456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+||+++++++
T Consensus       243 ~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          243 DSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             HHHSCSSTTTSCCHHHHTT
T ss_pred             HHHcccChhhCCCHHHHhc
Confidence            9999999999999999986

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.7e-37  Score=264.04  Aligned_cols=215  Identities=22%  Similarity=0.244  Sum_probs=172.9

Q ss_pred             hhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC
Q 042690           17 NRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ   80 (266)
Q Consensus        17 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~   80 (266)
                      +-++..+++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++.+.
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   96 (331)
T 4aaa_A           18 NLYFQSMEKYENLGLVGEGSYGMVMKCRNK-DTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK   96 (331)
T ss_dssp             -CCCBCGGGEEEEEEGGGGTTSSEEEEEET-TTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred             hhhhhhhhhheeeeEEeecCCEEEEEEEEC-CCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC
Confidence            445677899999999999999999999986 668899999752                377889999999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +..++||||+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....
T Consensus        97 ~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  176 (331)
T 4aaa_A           97 KRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  176 (331)
T ss_dssp             TEEEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             CEEEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecC
Confidence            99999999999999988876555543      44566667788888888876     89999999999999999986542


Q ss_pred             ccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                      . ........++..|+|||.+.+. .++.++||||||+++|+|++|+.||.....                         
T Consensus       177 ~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (331)
T 4aaa_A          177 P-GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN  255 (331)
T ss_dssp             --------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred             C-ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence            2 2223345689999999988765 688999999999999999999999865321                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                           +.....+.+++.+||+.||.+||+++++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence                                 123566889999999999999999998875

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.2e-37  Score=264.54  Aligned_cols=218  Identities=15%  Similarity=0.168  Sum_probs=176.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.|.+.+.||+|+||.||++.++ .++..||+|.+.          +++..+ +||||+++++++.+....++||||+++
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~g  100 (342)
T 2qr7_A           22 DGYEVKEDIGVGSYSVCKRCIHK-ATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKG  100 (342)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             ccEEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCC
Confidence            47999999999999999999986 678899999875          245555 799999999999999999999999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC----CEEEEeecCcceeecccccccccc
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY----FTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~----~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+|.+++.....++      +..++..++.++|.++++|+     ||++.++    +.++|+|||++....... .....
T Consensus       101 g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~  179 (342)
T 2qr7_A          101 GELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAEN-GLLMT  179 (342)
T ss_dssp             CBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTT-CCBCC
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCC-Cceec
Confidence            99999998766544      44566677788888888887     8997543    359999999998764322 23334


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC----------------------CccccchHHHHHH
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------~~~~~~~~~~l~~  215 (266)
                      ..+|+.|+|||++.+..++.++|+||||+++|+|++|..||....                      .......+.+++.
T Consensus       180 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  259 (342)
T 2qr7_A          180 PCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVS  259 (342)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHH
T ss_pred             cCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHH
Confidence            678999999999887778899999999999999999999997421                      1234567889999


Q ss_pred             HhhhcCCCCCCCHHHHHH--HHHHHHhCCC
Q 042690          216 QFVKEKPPLRPSLRIVAL--MLQSILEVPS  243 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~--~l~~~~~~~~  243 (266)
                      +||+.||.+||++.++++  .+..+...+.
T Consensus       260 ~~L~~dP~~R~t~~~il~hp~~~~~~~~~~  289 (342)
T 2qr7_A          260 KMLHVDPHQRLTAALVLRHPWIVHWDQLPQ  289 (342)
T ss_dssp             HHTCSSTTTSCCHHHHTTSHHHHTGGGSCC
T ss_pred             HHCCCChhHCcCHHHHhcCCeecCcccccc
Confidence            999999999999999985  4555544443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3.7e-37  Score=261.46  Aligned_cols=219  Identities=19%  Similarity=0.246  Sum_probs=177.0

Q ss_pred             CceeeeeccCCCcceEEEEEEE---cCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEe--CCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVL---APGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIE--QECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~---~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~--~~~~~   84 (266)
                      .+|.+.+.||+|+||.||++.+   ...++..||+|++.              ++++.++||||+++++++..  ....+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5899999999999999999995   23578889999864              37788999999999999874  45689


Q ss_pred             EEEEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++... ..+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  182 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD  182 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCS
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCCc
Confidence            999999999999999763 2233      44556666788887777776     99999999999999999987643222


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC------------------------------
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ------------------------------  200 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~------------------------------  200 (266)
                      .  ......++..|+|||++.+..++.++||||||+++|+|++|..||..                              
T Consensus       183 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (327)
T 3lxl_A          183 YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQR  262 (327)
T ss_dssp             EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCC
T ss_pred             cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccC
Confidence            1  22335578889999999888889999999999999999999988754                              


Q ss_pred             -CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          201 -GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       201 -~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                       ..+......+.+++.+||+.||.+||+++++++.|+.+....
T Consensus       263 ~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          263 LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence             122345567889999999999999999999999999886543

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=262.10  Aligned_cols=216  Identities=13%  Similarity=0.073  Sum_probs=171.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH-------------------------HHhhhcCCCceeeeeeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD-------------------------KVVHVAHHKNLVCLLGY   76 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~-------------------------~~l~~~~h~~iv~~~~~   76 (266)
                      ++|.+.+.||+|+||.||+|.+..  ..+..+|+|...                         ..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            579999999999999999999862  267788988753                         13556799999999999


Q ss_pred             EEe----CCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC--EEEEe
Q 042690           77 HIE----QECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF--TVETS  139 (266)
Q Consensus        77 ~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~--~~~l~  139 (266)
                      +..    ....++||||+ +++|.+++.....++      +..++..++.++|..+++|+     ||+++.++  .++|+
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~  195 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLA  195 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEEC
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEE
Confidence            987    67899999999 899999998665544      44556666788888888777     89999887  99999


Q ss_pred             ecCcceeecccccc------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------
Q 042690          140 DLGLAKLLMINQTQ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------  202 (266)
Q Consensus       140 Dfg~a~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------  202 (266)
                      |||+++........      ......+|..|+|||++.+..++.++||||||+++|+|+||+.||....           
T Consensus       196 Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~  275 (345)
T 2v62_A          196 DYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKT  275 (345)
T ss_dssp             CCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHH
T ss_pred             eCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHH
Confidence            99999876432111      1134578999999999998889999999999999999999999995411           


Q ss_pred             ------Cc---------cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          203 ------DP---------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       203 ------~~---------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                            +.         .....+.+++.+||+.||.+||+++++++.|+....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          276 NLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             hhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence                  11         445588899999999999999999999999988755

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.4e-37  Score=256.29  Aligned_cols=221  Identities=17%  Similarity=0.206  Sum_probs=178.2

Q ss_pred             cCceeeee-ccCCCcceEEEEEEEc-CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLK-KPCGGSFSTVYTGVLA-PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~-~ig~G~~g~V~~~~~~-~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|++.+ .||+|+||.||+|.+. ...+..||+|.+.               ++++.++||||+++++++ ..+..++
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l   86 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML   86 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence            45778877 9999999999999863 2467789998864               377788999999999998 4566899


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.........
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  166 (287)
T 1u59_A           87 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY  166 (287)
T ss_dssp             EEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCE
T ss_pred             EEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcce
Confidence            999999999999996433 233      44566666788888877776     899999999999999999876432221


Q ss_pred             --ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHH
Q 042690          154 --TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIA  214 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~  214 (266)
                        ......+++.|+|||.+.+..++.++|+||||+++|+|+| |+.||...                .++.....+.+++
T Consensus       167 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li  246 (287)
T 1u59_A          167 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALM  246 (287)
T ss_dssp             ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHH
Confidence              1223456789999999988788999999999999999998 99998652                2345567888999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      .+||+.||.+||++.++++.|+.+......
T Consensus       247 ~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~  276 (287)
T 1u59_A          247 SDCWIYKWEDRPDFLTVEQRMRACYYSLAS  276 (287)
T ss_dssp             HHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999998665443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=5.2e-37  Score=256.17  Aligned_cols=212  Identities=21%  Similarity=0.310  Sum_probs=162.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||.||+|.+.    ..+|+|.+.                .+++.++||||++++++. .....++||
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~~~~~----~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~   98 (289)
T 3og7_A           24 GQITVGQRIGSGSFGTVYKGKWH----GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT   98 (289)
T ss_dssp             TSCEEEEEEEECSSEEEEEEESS----SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred             cceeeeeEecCCCCeEEEEEEEc----CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence            57999999999999999999863    247887653                377889999999999965 556688999


Q ss_pred             EcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-ccc
Q 042690           88 KFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-TQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~~~  154 (266)
                      ||+++++|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++....... ...
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  178 (289)
T 3og7_A           99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQ  178 (289)
T ss_dssp             ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC-------------
T ss_pred             EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccccccc
Confidence            9999999999996433 23      344566677788888888877     8999999999999999997654221 222


Q ss_pred             cccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------CccccchH
Q 042690          155 LTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------DPKTLEKP  210 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~~~~~~~~  210 (266)
                      .....+|+.|+|||.+.   +..++.++||||||+++|+|++|+.||....                     ....+..+
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  258 (289)
T 3og7_A          179 FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRM  258 (289)
T ss_dssp             -----CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHH
T ss_pred             ccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHH
Confidence            33456899999999886   5678889999999999999999999997521                     12345678


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .+++.+||+.||.+||++.++++.|+.+.+
T Consensus       259 ~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          259 KRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            899999999999999999999999998764

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.8e-37  Score=264.90  Aligned_cols=206  Identities=18%  Similarity=0.194  Sum_probs=165.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .+...+.||+|+||.||+|... .++..||+|++.              ++++.++||||+++++++...+..++||||+
T Consensus        90 ~~~~~~~lG~G~~g~Vy~a~~~-~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~  168 (373)
T 2x4f_A           90 TVSKTEILGGGRFGQVHKCEET-ATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYV  168 (373)
T ss_dssp             EEEEEEECC-----CEEEEEET-TTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             eeecceEEecCcCEEEEEEEEc-CCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence            3445678999999999999976 578889999754              3778899999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceee--cCCCEEEEeecCcceeeccccccccc
Q 042690           91 HNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILL--HDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        91 ~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili--~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ++++|.+++.... .+.      +..++..++.++|..+++|+     ||++  +.++.++|+|||++......  ....
T Consensus       169 ~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~--~~~~  246 (373)
T 2x4f_A          169 DGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR--EKLK  246 (373)
T ss_dssp             TTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT--CBCC
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc--cccc
Confidence            9999999886532 233      34566677788888887776     8998  56789999999999876432  2233


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHHHHh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIAIQF  217 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~c  217 (266)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||.....                   ......+.+++.+|
T Consensus       247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~  326 (373)
T 2x4f_A          247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKL  326 (373)
T ss_dssp             CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTT
T ss_pred             cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHH
Confidence            45689999999999888899999999999999999999999975221                   23456788999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.||.+||+++++++
T Consensus       327 L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          327 LIKEKSWRISASEALK  342 (373)
T ss_dssp             SCSSGGGSCCHHHHHH
T ss_pred             cCCChhhCCCHHHHhc
Confidence            9999999999999986

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.8e-36  Score=251.98  Aligned_cols=218  Identities=14%  Similarity=0.113  Sum_probs=175.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEE-EeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYH-IEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~-~~~~~~~lv~e~~   90 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.            ++++.++|++++..+..+ ......++||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 4hgt_A            9 NRYRLGRKIGSGSFGDIYLGTDI-AAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             --CEEEEEEEECSSSEEEEEEET-TTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CceEEeeeecCCCCeEEEEEEEc-CCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc
Confidence            47999999999999999999975 678899999643            477888887776666655 5677889999999


Q ss_pred             CCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeeccccc---
Q 042690           91 HNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQT---  152 (266)
Q Consensus        91 ~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~---  152 (266)
                       +++|.+++... ..++      +..++..++.++|.++++|+     ||++   +.++.++|+|||++........   
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~  166 (296)
T 4hgt_A           88 -GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  166 (296)
T ss_dssp             -CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCcc
Confidence             88999999743 3333      44566677788888887776     8999   7889999999999987653322   


Q ss_pred             ---cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccc
Q 042690          153 ---QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKT  206 (266)
Q Consensus       153 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~  206 (266)
                         .......+|+.|+|||.+.+..++.++||||||+++|+|++|+.||.....                       ...
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (296)
T 4hgt_A          167 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGY  246 (296)
T ss_dssp             CCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTS
T ss_pred             CCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccC
Confidence               122346789999999999998999999999999999999999999975221                       223


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +..+.+++.+||+.||.+||+++++++.|+.+.....
T Consensus       247 ~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          247 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999999876543

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=2.6e-37  Score=262.86  Aligned_cols=220  Identities=19%  Similarity=0.203  Sum_probs=178.3

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCC----CcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPG----DKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~----~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      -...+|.+.+.||+|+||.||+|.+...    ....||+|.+.               .+++.+ +||||+++++++...
T Consensus        43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  122 (333)
T 2i1m_A           43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG  122 (333)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence            4457899999999999999999997522    12468888653               367778 899999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcC--------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCE
Q 042690           81 ECRLLVYKFMHNRSISSLLYECL--------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFT  135 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~--------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~  135 (266)
                      +..++||||+++++|.+++....              .+      .+..++..++.++|..+++|+     ||+++.++.
T Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~  202 (333)
T 2i1m_A          123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHV  202 (333)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGE
T ss_pred             CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCe
Confidence            99999999999999999997532              12      244566677788888887776     899999999


Q ss_pred             EEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC-----------
Q 042690          136 VETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS-----------  202 (266)
Q Consensus       136 ~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~-----------  202 (266)
                      ++|+|||++......... ......+++.|+|||++.+..++.++||||||+++|+|+| |..||....           
T Consensus       203 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~  282 (333)
T 2i1m_A          203 AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKD  282 (333)
T ss_dssp             EEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHH
T ss_pred             EEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhc
Confidence            999999999865433222 2223456788999999888889999999999999999999 888886522           


Q ss_pred             ------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          203 ------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       203 ------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                            +......+.+++.+||+.||.+||++.++++.|+....
T Consensus       283 ~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          283 GYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence                  23345678899999999999999999999999998754

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.3e-37  Score=267.78  Aligned_cols=209  Identities=20%  Similarity=0.238  Sum_probs=161.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC-CCceeeeeeEEEeCC--eE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH-HKNLVCLLGYHIEQE--CR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~-h~~iv~~~~~~~~~~--~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+. .+++.||+|++.                .+++.+. ||||+++++++..++  ..
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDR-RTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEET-TTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEEC-CCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            358999999999999999999976 678899999763                2666776 999999999997644  68


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc--
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN--  150 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~--  150 (266)
                      ++||||+.+ +|.+++... .+.      +..++..++.++|..+++|+     ||+++.++.+||+|||+++.....  
T Consensus        87 ~lv~e~~~~-~L~~~~~~~-~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  164 (388)
T 3oz6_A           87 YLVFDYMET-DLHAVIRAN-ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRR  164 (388)
T ss_dssp             EEEEECCSE-EHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCC
T ss_pred             EEEecccCc-CHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCccccccccccc
Confidence            999999984 999999753 332      44567777788888888887     999999999999999999865321  


Q ss_pred             ------------------cccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------
Q 042690          151 ------------------QTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------  203 (266)
Q Consensus       151 ------------------~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------  203 (266)
                                        .........||+.|+|||++.+ ..++.++|||||||++|+|++|++||.+...        
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~  244 (388)
T 3oz6_A          165 VTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERII  244 (388)
T ss_dssp             CCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence                              1112234578999999998876 5789999999999999999999999975221        


Q ss_pred             ------------------------------------------------------ccccchHHHHHHHhhhcCCCCCCCHH
Q 042690          204 ------------------------------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLR  229 (266)
Q Consensus       204 ------------------------------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~  229 (266)
                                                                            ......+.+++.+||+.||.+|||++
T Consensus       245 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~  324 (388)
T 3oz6_A          245 GVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISAN  324 (388)
T ss_dssp             HHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHH
Confidence                                                                  03345778999999999999999999


Q ss_pred             HHHHH
Q 042690          230 IVALM  234 (266)
Q Consensus       230 ~il~~  234 (266)
                      ++++.
T Consensus       325 e~l~H  329 (388)
T 3oz6_A          325 DALKH  329 (388)
T ss_dssp             HHTTS
T ss_pred             HHhCC
Confidence            99864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=8.1e-37  Score=258.77  Aligned_cols=206  Identities=14%  Similarity=0.161  Sum_probs=173.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .|.+.+.||+|+||.||+|.+. .++..+|+|.+.                    .+++.++||||+++++++.+.+..+
T Consensus        13 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           13 FYDIGEELGSGQFAIVKKCREK-STGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cEEEeeEeeecCCEEEEEEEEC-CCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            6899999999999999999986 678889998653                    3678899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC----EEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF----TVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~----~~~l~Dfg~a~~~~~  149 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++    .++|+|||++.....
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~  171 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCc
Confidence            9999999999999998765543      44566677788888887776     89999888    799999999987643


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~  210 (266)
                        ........+|+.|+|||.+.+..++.++|+||||+++|+|++|..||.....                   ......+
T Consensus       172 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  249 (321)
T 2a2a_A          172 --GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELA  249 (321)
T ss_dssp             --TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHH
T ss_pred             --cccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHH
Confidence              2223445689999999999988899999999999999999999999965221                   2244567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.||.+||+++++++
T Consensus       250 ~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          250 KDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             HHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHhc
Confidence            89999999999999999999986

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=4e-36  Score=251.20  Aligned_cols=219  Identities=14%  Similarity=0.106  Sum_probs=177.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEE-EeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYH-IEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~-~~~~~~~lv~e~~   90 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|.+.            .+++.++|++++..+..+ ......++||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A            9 NRYRLGRKIGSGSFGDIYLGTDI-AAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEET-TTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEEEEEccCCCeEEEEEEEc-CCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence            57999999999999999999975 678899999754            477888888766666555 5667789999999


Q ss_pred             CCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeecccccc--
Q 042690           91 HNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        91 ~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                       +++|.+++... ..++      +..++..++.++|.++++|+     ||++   +.++.++|+|||++.........  
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~  166 (296)
T 3uzp_A           88 -GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  166 (296)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccc
Confidence             88999999743 3333      44566667788888887776     8999   48899999999999876533221  


Q ss_pred             ----ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccc
Q 042690          154 ----TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKT  206 (266)
Q Consensus       154 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~  206 (266)
                          ......+|+.|+|||.+.+..++.++||||||+++|+|++|+.||.....                       ...
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (296)
T 3uzp_A          167 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGY  246 (296)
T ss_dssp             CCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTS
T ss_pred             cccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhC
Confidence                12346789999999999998899999999999999999999999975221                       234


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      +..+.+++.+||+.||.+||+++++++.|+.+......
T Consensus       247 ~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~  284 (296)
T 3uzp_A          247 PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF  284 (296)
T ss_dssp             CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence            56788999999999999999999999999998765543

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.9e-37  Score=262.47  Aligned_cols=218  Identities=19%  Similarity=0.235  Sum_probs=179.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .++|.+.+.||+|+||.||+|.+..    ..+..||+|.+.               .+++.++||||+++++++.+.+..
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~  103 (322)
T 1p4o_A           24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT  103 (322)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCcc
Confidence            4579999999999999999998642    357789999764               377888999999999999988899


Q ss_pred             EEEEEcCCCCCHHHHHhhcC----------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           84 LLVYKFMHNRSISSLLYECL----------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~----------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                      ++||||+++++|.+++....          .      ..+..++..++.++|..+++|+     ||+++.++.++|+|||
T Consensus       104 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~Dfg  183 (322)
T 1p4o_A          104 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFG  183 (322)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTT
T ss_pred             EEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECcCc
Confidence            99999999999999997532          1      2244566677788888888877     8999999999999999


Q ss_pred             cceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCc
Q 042690          143 LAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDP  204 (266)
Q Consensus       143 ~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~  204 (266)
                      ++......... ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...                .+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  263 (322)
T 1p4o_A          184 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPD  263 (322)
T ss_dssp             CCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCT
T ss_pred             cccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCcCCCCC
Confidence            99865432221 2233456888999999988889999999999999999999 78888651                234


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      .....+.+++.+||+.||.+||++.++++.|+....
T Consensus       264 ~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          264 NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            455678899999999999999999999999988754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1.1e-37  Score=281.11  Aligned_cols=220  Identities=22%  Similarity=0.290  Sum_probs=180.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ..++|.+.+.||+|+||.||+|.+.  .+..||+|++.             ++++.++||||+++++++.. +..++|||
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e  341 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWN--GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE  341 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET--TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred             chhhhhhheecccCCCeEEEEEEEC--CCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence            4567999999999999999999985  45679999765             37889999999999999865 66899999


Q ss_pred             cCCCCCHHHHHhhc--CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYEC--LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~--~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+.+++|.+++...  ..+      .+..++..++.++|.++++|+     |||++.++.+||+|||+++..........
T Consensus       342 ~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~  421 (535)
T 2h8h_A          342 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  421 (535)
T ss_dssp             CCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTT
T ss_pred             hhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecc
Confidence            99999999999743  223      344566677788888888887     89999999999999999987543222222


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++||||||+++|+|+| |+.||...                .+......+.+++.+||
T Consensus       422 ~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl  501 (535)
T 2h8h_A          422 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW  501 (535)
T ss_dssp             CSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHT
T ss_pred             cCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHc
Confidence            33456788999999888889999999999999999999 88888652                13345567889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                      +.||.+||++++|++.|+.+.....+
T Consensus       502 ~~dP~~RPt~~~l~~~L~~~~~~~~~  527 (535)
T 2h8h_A          502 RKEPEERPTFEYLQAFLEDYFTSTEP  527 (535)
T ss_dssp             CSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred             CCChhHCcCHHHHHHHHHHHhhccCc
Confidence            99999999999999999998765444

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=5.9e-37  Score=263.50  Aligned_cols=207  Identities=14%  Similarity=0.169  Sum_probs=169.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+|.+.+.||+|+||.||++.+. .++..||+|.+.               .+++.++||||+++++++.+++..++||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  110 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHK-PSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM  110 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceeeeeecCCCCeEEEEEEEC-CCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEE
Confidence            357999999999999999999986 678889999753               3777889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCCH------HHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYECLRPTW------QQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~~------~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++.....+..      ..++..++.++|+. +++|+     ||+++.++.++|+|||++.....   ...
T Consensus       111 e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---~~~  187 (360)
T 3eqc_A          111 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMA  187 (360)
T ss_dssp             CCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH---HC-
T ss_pred             ECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCccccc---ccc
Confidence            99999999999987665443      34455555666653 56665     99999999999999999975432   122


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------------------
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------------------  203 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------------------  203 (266)
                      ....+|+.|+|||++.+..++.++||||||+++|+|++|+.||.....                                
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T 3eqc_A          188 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKF  267 (360)
T ss_dssp             ---CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------
T ss_pred             cCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCccccc
Confidence            345689999999999998999999999999999999999999864211                                


Q ss_pred             ---------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                 ......+.+++.+||+.||.+|||++++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          268 GMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             ------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             ccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence                                       113456789999999999999999999985

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=256.34  Aligned_cols=206  Identities=18%  Similarity=0.207  Sum_probs=168.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHh---hhcCCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVV---HVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l---~~~~h~~iv~~~~~~~~~~   81 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|++.                   .++   +.++||||+++++++....
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~   87 (308)
T 3g33_A            9 SRYEPVAEIGVGAYGTVYKARDP-HSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR   87 (308)
T ss_dssp             -CCEEEEEECCSSSCCEEEEECT-TTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEEC-CCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence            58999999999999999999975 678899999763                   133   3446999999999998755


Q ss_pred             -----eEEEEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCc
Q 042690           82 -----CRLLVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        82 -----~~~lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                           ..++||||+.+ +|.+++.....  ++      +..++..++.++|..+++|+     ||+++.++.++|+|||+
T Consensus        88 ~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           88 TDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             SSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             CCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence                 47899999975 99999986543  33      44666677788888888877     99999999999999999


Q ss_pred             ceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------
Q 042690          144 AKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------  203 (266)
Q Consensus       144 a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------  203 (266)
                      +.....  ........+|+.|+|||++.+..++.++|||||||++|+|++|+.||.....                    
T Consensus       167 a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  244 (308)
T 3g33_A          167 ARIYSY--QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWP  244 (308)
T ss_dssp             TTTSTT--CCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSC
T ss_pred             ccccCC--CcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcc
Confidence            986532  2223446689999999999888899999999999999999999999965211                    


Q ss_pred             ----------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ----------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ----------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                            +.....+.+++.+||+.||.+|||+.++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          245 RDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             SSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             chhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence                                  123456778999999999999999999885

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.1e-36  Score=255.19  Aligned_cols=228  Identities=21%  Similarity=0.237  Sum_probs=172.9

Q ss_pred             hhhhhHhcccCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH----------------HHhhhcCCCceeeeee
Q 042690           14 QYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD----------------KVVHVAHHKNLVCLLG   75 (266)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~   75 (266)
                      .......-+.++|.+.+.||+|+||.||+|.+..  ..+..||+|.+.                .+++.++||||+++++
T Consensus        24 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~  103 (313)
T 3brb_A           24 NKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLG  103 (313)
T ss_dssp             CCTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCE
T ss_pred             hhHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeE
Confidence            3334444456789999999999999999998753  255689999765                2677889999999999


Q ss_pred             EEEeCC-----eEEEEEEcCCCCCHHHHHhhc------CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690           76 YHIEQE-----CRLLVYKFMHNRSISSLLYEC------LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus        76 ~~~~~~-----~~~lv~e~~~~~~L~~~l~~~------~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                      ++....     ..++||||+++++|.+++...      ..++      +..++..++.++|..+++|+     ||+++.+
T Consensus       104 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          104 VCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             EEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTT
T ss_pred             EEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCC
Confidence            997654     358999999999999999532      2233      44566667788888888877     8999999


Q ss_pred             CEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------
Q 042690          134 FTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------  201 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------  201 (266)
                      +.++|+|||++......... ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...          
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~  263 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLL  263 (313)
T ss_dssp             SCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH
T ss_pred             CcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHH
Confidence            99999999999875432221 2223456788999999988889999999999999999999 88888652          


Q ss_pred             ------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          202 ------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       202 ------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                            .+......+.+++.+||+.||.+||+++++++.|+.+.+.
T Consensus       264 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~  309 (313)
T 3brb_A          264 HGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES  309 (313)
T ss_dssp             TTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence                  1233456788999999999999999999999999998653

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=7.8e-37  Score=262.69  Aligned_cols=204  Identities=19%  Similarity=0.221  Sum_probs=168.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC-----CCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH-----HKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~-----h~~iv~~~~~~~~~~~~~l   85 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|++.             .+++.+.     ||||+++++++...+..++
T Consensus        35 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~l  113 (360)
T 3llt_A           35 NAFLVIRKMGDGTFGRVLLCQHI-DNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCL  113 (360)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEE
T ss_pred             CEEEEEEEEcccCCeEEEEEEEC-CCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEE
Confidence            47999999999999999999986 678899999864             2566665     9999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecC--------------------
Q 042690           86 VYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHD--------------------  132 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~--------------------  132 (266)
                      ||||+ +++|.+++.....  +.      +..++..++.++|..+++|+     ||+++.                    
T Consensus       114 v~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~  192 (360)
T 3llt_A          114 IFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQ  192 (360)
T ss_dssp             EECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEE
T ss_pred             EEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhccccccccc
Confidence            99999 8899999986542  33      45566777788888888877     899975                    


Q ss_pred             -----CCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCcc--
Q 042690          133 -----YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK--  205 (266)
Q Consensus       133 -----~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~--  205 (266)
                           ++.++|+|||++.....    ......||+.|+|||++.+..++.++|||||||++|+|++|+.||.......  
T Consensus       193 ~~~~~~~~~kl~DFG~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~  268 (360)
T 3llt_A          193 IYRTKSTGIKLIDFGCATFKSD----YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHL  268 (360)
T ss_dssp             EEEESCCCEEECCCTTCEETTS----CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             ccccCCCCEEEEeccCceecCC----CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHH
Confidence                 78999999999986432    2234568999999999999899999999999999999999999996521100  


Q ss_pred             -----------------------------------------------------------ccchHHHHHHHhhhcCCCCCC
Q 042690          206 -----------------------------------------------------------TLEKPVMIAIQFVKEKPPLRP  226 (266)
Q Consensus       206 -----------------------------------------------------------~~~~~~~l~~~cl~~~p~~Rp  226 (266)
                                                                                 ....+.+++.+||+.||.+||
T Consensus       269 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp  348 (360)
T 3llt_A          269 AMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRP  348 (360)
T ss_dssp             HHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSC
T ss_pred             HHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCC
Confidence                                                                       014456899999999999999


Q ss_pred             CHHHHHH
Q 042690          227 SLRIVAL  233 (266)
Q Consensus       227 s~~~il~  233 (266)
                      |++++++
T Consensus       349 ta~elL~  355 (360)
T 3llt_A          349 SPAELLK  355 (360)
T ss_dssp             CHHHHTT
T ss_pred             CHHHHhc
Confidence            9999874

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=5.2e-37  Score=258.90  Aligned_cols=220  Identities=21%  Similarity=0.240  Sum_probs=179.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      ..++|.+.+.||+|+||.||+|.+.    ..++..||+|.+.               .+++.+ +||||+++++++...+
T Consensus        25 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  104 (316)
T 2xir_A           25 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG  104 (316)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             chhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCC
Confidence            4568999999999999999999863    3567889999864               256666 6899999999987754


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCC----------------CC------HHHHHHHHHHHhhhcCcccc-----ceeecCC
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLR----------------PT------WQQRMQDCIRDCWRTRALAC-----RILLHDY  133 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~----------------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~  133 (266)
                       ..++||||+++++|.+++.....                ++      +..++..++.++|..+++|+     ||+++.+
T Consensus       105 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~  184 (316)
T 2xir_A          105 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK  184 (316)
T ss_dssp             SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred             CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCC
Confidence             48999999999999999986432                22      44566677788888888877     8999999


Q ss_pred             CEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC---------
Q 042690          134 FTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS---------  202 (266)
Q Consensus       134 ~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~---------  202 (266)
                      +.++|+|||++......... ......+++.|+|||++.+..++.++||||||+++|+|+| |..||....         
T Consensus       185 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~  264 (316)
T 2xir_A          185 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL  264 (316)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHH
T ss_pred             CCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHh
Confidence            99999999999865432222 2233556889999999988889999999999999999998 998986522         


Q ss_pred             --------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          203 --------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       203 --------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                              +......+.+++.+||+.||.+||++.++++.|+.+.+.
T Consensus       265 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          265 KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence                    233456788999999999999999999999999988653

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=9.6e-37  Score=254.76  Aligned_cols=218  Identities=19%  Similarity=0.192  Sum_probs=177.3

Q ss_pred             ccCceeeee-ccCCCcceEEEEEEEc-CCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLK-KPCGGSFSTVYTGVLA-PGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~-~ig~G~~g~V~~~~~~-~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      +...|.+.+ .||+|+||.||+|.+. ...+..||+|.+.                .+++.++||||+++++++ ..+..
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~   92 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW   92 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence            456888888 9999999999999753 2457889998764                367788999999999998 56678


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        93 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  172 (291)
T 1xbb_A           93 MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  172 (291)
T ss_dssp             EEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             EEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCC
Confidence            89999999999999998766544      44556666788888877776     89999999999999999987643322


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHH
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMI  213 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l  213 (266)
                      .  ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||...                .+......+.++
T Consensus       173 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  252 (291)
T 1xbb_A          173 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDL  252 (291)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHH
Confidence            2  1222345688999999988888999999999999999999 99998752                234456788899


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          214 AIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +.+||+.||.+||++.++++.|+.+..
T Consensus       253 i~~~l~~dp~~Rps~~~l~~~L~~~~~  279 (291)
T 1xbb_A          253 MNLCWTYDVENRPGFAAVELRLRNYYY  279 (291)
T ss_dssp             HHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            999999999999999999999998854

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=6.4e-37  Score=260.34  Aligned_cols=210  Identities=17%  Similarity=0.251  Sum_probs=166.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ..+++|.+.+.||+|+||.||+|.+. .+++.||+|++.                .+++.++||||+++++++.++...+
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDT-VTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEET-TTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEEC-CCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34668999999999999999999976 678899999764                3788899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec-----CCCEEEEeecCcceeec
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH-----DYFTVETSDLGLAKLLM  148 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~-----~~~~~~l~Dfg~a~~~~  148 (266)
                      +||||+.+ +|.+++.....+.      +..++..++.++|..+++|+     ||+++     .++.++|+|||++....
T Consensus       110 lv~e~~~~-~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          110 LIFEYAEN-DLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             EEEECCSE-EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             EEEecCCC-CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence            99999985 9999998766554      44566677788888888887     89994     55569999999997653


Q ss_pred             cccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc-----------------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP-----------------------  204 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-----------------------  204 (266)
                      .. ........+|..|+|||++.+. .++.++|||||||++|+|++|+.||......                       
T Consensus       189 ~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (329)
T 3gbz_A          189 IP-IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTA  267 (329)
T ss_dssp             ------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGG
T ss_pred             Cc-ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhh
Confidence            22 2233345679999999988764 4899999999999999999999998652210                       


Q ss_pred             ----------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ----------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ----------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                            .....+.+++.+||+.||.+|||++++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          268 LPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             STTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                                  03456778999999999999999999875

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=254.44  Aligned_cols=209  Identities=15%  Similarity=0.154  Sum_probs=169.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ...|.+.+.||+|+||.||+|.+. .++..||+|.+.            .+++.++||||+++++++...+..++||||+
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHK-ETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEET-TTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             hhhhhhheeeccCCCeEEEEEEEC-CCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecC
Confidence            457999999999999999999975 568899999764            4778889999999999999999999999999


Q ss_pred             CCCCHHHHHhh-cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccccc
Q 042690           91 HNRSISSLLYE-CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGM  158 (266)
Q Consensus        91 ~~~~L~~~l~~-~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  158 (266)
                      .+++|.+++.. ...++      +..++..++.++|..+++|.     ||+++.++.++|+|||++...... .......
T Consensus       107 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~  185 (314)
T 3com_A          107 GAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT-MAKRNTV  185 (314)
T ss_dssp             TTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTT-BSCBCCC
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhh-ccccCcc
Confidence            99999999973 33343      44556666688887777776     899999999999999999875422 2223345


Q ss_pred             cCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhc
Q 042690          159 RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       159 ~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~  220 (266)
                      .++..|+|||.+.+..++.++||||||+++|+|++|+.||....                  +......+.+++.+||+.
T Consensus       186 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  265 (314)
T 3com_A          186 IGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVK  265 (314)
T ss_dssp             CSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCS
T ss_pred             CCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccC
Confidence            68999999999998889999999999999999999999986521                  223456788999999999


Q ss_pred             CCCCCCCHHHHHH
Q 042690          221 KPPLRPSLRIVAL  233 (266)
Q Consensus       221 ~p~~Rps~~~il~  233 (266)
                      ||.+||++.++++
T Consensus       266 dp~~Rpt~~~ll~  278 (314)
T 3com_A          266 SPEQRATATQLLQ  278 (314)
T ss_dssp             CTTTSCCHHHHTT
T ss_pred             ChhhCcCHHHHHh
Confidence            9999999999975

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=4.7e-37  Score=254.92  Aligned_cols=213  Identities=22%  Similarity=0.241  Sum_probs=171.2

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEeC-CeEEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIEQ-ECRLLVY   87 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~~-~~~~lv~   87 (266)
                      -+.++|.+.+.||+|+||.||++.+   .+..||+|.+.            .+++.++||||+++++++... +..++||
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   94 (278)
T 1byg_A           18 LNMKELKLLQTIGKGEFGDVMLGDY---RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   94 (278)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEE---TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             CChhhceEEeEEecCCCceEEEEEE---cCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence            4567999999999999999999987   57789999764            377888999999999997554 4689999


Q ss_pred             EcCCCCCHHHHHhhcCC--------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECLR--------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~--------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||+++++|.+++.....        ..+..++..++.++|..+++|+     ||+++.++.++|+|||++......    
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~----  170 (278)
T 1byg_A           95 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----  170 (278)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             ecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeecccccccccc----
Confidence            99999999999975432        2344566677788888888876     899999999999999999764321    


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~c  217 (266)
                      .....++..|+|||.+.+..++.++|+||||+++|+|+| |+.||...                .+......+.+++.+|
T Consensus       171 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  250 (278)
T 1byg_A          171 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNC  250 (278)
T ss_dssp             -----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHH
Confidence            122346889999999988889999999999999999998 99888652                1234456788999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHh
Q 042690          218 VKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      |+.||.+||++.++++.|+.+..
T Consensus       251 l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          251 WHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hcCChhhCCCHHHHHHHHHHHHh
Confidence            99999999999999999998865

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=5.8e-37  Score=271.97  Aligned_cols=208  Identities=20%  Similarity=0.213  Sum_probs=165.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      .++|.+.+.||+|+||+||+|.+. .+++.||+|++.                .+++.++||||+++++++...      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDA-VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEET-TTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEEC-CCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence            467999999999999999999976 678899999873                377889999999999999654      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ...++||||+.+ +|.+.+...-.    ..+..++..++.++|..+++|+     ||+++.++.+||+|||+++....  
T Consensus       140 ~~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~--  216 (464)
T 3ttj_A          140 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--  216 (464)
T ss_dssp             CEEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-------
T ss_pred             CeEEEEEeCCCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCC--
Confidence            357999999976 67777753211    2355677778899998888887     99999999999999999987542  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCcc--------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK--------------------------  205 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~--------------------------  205 (266)
                      ........||+.|+|||++.+..++.++|||||||++|+|++|+.||.+....+                          
T Consensus       217 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~  296 (464)
T 3ttj_A          217 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRN  296 (464)
T ss_dssp             CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHH
T ss_pred             CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhh
Confidence            223345678999999999999899999999999999999999999997522000                          


Q ss_pred             -------------------------------ccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          206 -------------------------------TLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       206 -------------------------------~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                     ....+.+++.+||+.||.+|||++|+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          297 YVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                                           02357889999999999999999999853

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.1e-36  Score=254.94  Aligned_cols=219  Identities=21%  Similarity=0.312  Sum_probs=172.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEE-eCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHI-EQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~-~~~~~~   84 (266)
                      ...|.+.+.||+|+||.||+|.+...  ....+++|.+.               .+++.++||||+++++++. .++..+
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence            34689999999999999999997522  33457888754               3778899999999999865 456788


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus       104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  183 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEY  183 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGG
T ss_pred             EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccch
Confidence            99999999999999975332 33      44566677788888888887     89999999999999999987543221


Q ss_pred             ---cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCC-CcccCCC----------------CccccchHHH
Q 042690          153 ---QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR-CVERQGS----------------DPKTLEKPVM  212 (266)
Q Consensus       153 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~-~p~~~~~----------------~~~~~~~~~~  212 (266)
                         .......+++.|+|||.+.+..++.++|+||||+++|+|++|. +||....                +......+.+
T Consensus       184 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  263 (298)
T 3f66_A          184 YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYE  263 (298)
T ss_dssp             CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHH
T ss_pred             hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCHHHHH
Confidence               1223355678899999998888999999999999999999954 5554411                2334567889


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          213 IAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      ++.+||+.||.+||+++++++.|+.+...
T Consensus       264 li~~~l~~~p~~Rps~~ell~~L~~~~~~  292 (298)
T 3f66_A          264 VMLKCWHPKAEMRPSFSELVSRISAIFST  292 (298)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999999998764

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=8.8e-37  Score=275.23  Aligned_cols=209  Identities=22%  Similarity=0.266  Sum_probs=176.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ...+|.+.+.||+|+||.||+|.++ .++..||+|++.                 .+++.++||||+++++++.+.+..+
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~-~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  260 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVR-ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC  260 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEEC-CCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE
Confidence            3457999999999999999999986 678899999763                 3778899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           85 LVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      +||||+++|+|.+++.....  ++      +..++..++.++|.++++|+     ||+++.+|.+||+|||++...... 
T Consensus       261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~-  339 (576)
T 2acx_A          261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-  339 (576)
T ss_dssp             EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT-
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccC-
Confidence            99999999999999976443  33      34556677788888888887     999999999999999999876422 


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVM  212 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~  212 (266)
                       .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||....                   +......+.+
T Consensus       340 -~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~d  418 (576)
T 2acx_A          340 -QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARS  418 (576)
T ss_dssp             -CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred             -ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHH
Confidence             22334579999999999998889999999999999999999999997632                   2234567788


Q ss_pred             HHHHhhhcCCCCCC-----CHHHHHH
Q 042690          213 IAIQFVKEKPPLRP-----SLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rp-----s~~~il~  233 (266)
                      ++.+||+.||.+||     +++|+++
T Consensus       419 LI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          419 LCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             HHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             HHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            99999999999999     6788864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.6e-36  Score=280.03  Aligned_cols=209  Identities=18%  Similarity=0.198  Sum_probs=176.3

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc-CCCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      .+++|.+++.||+|+||.||+|.++ .+++.||+|++..                 ++..+ +||+|+++++++.+.+.+
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~-~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERK-GTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEES-SSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEEC-CCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            4678999999999999999999986 6788899998642                 34444 699999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+||||+++|+|.+++.....+.      +..++..++.++|..+++|+     |||++.+|.+||+|||+++.... ..
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~-~~  496 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW-DG  496 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC-TT
T ss_pred             EEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeecccc-CC
Confidence            99999999999999998766654      44566677788888888887     99999999999999999986432 22


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHh
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQF  217 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~c  217 (266)
                      .......||+.|+|||++.+..++.++|+||||+++|||++|+.||...               .+......+.+++.+|
T Consensus       497 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~l  576 (674)
T 3pfq_A          497 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGL  576 (674)
T ss_dssp             CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHH
T ss_pred             cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHH
Confidence            3344567999999999999999999999999999999999999999762               2344667888999999


Q ss_pred             hhcCCCCCCCH-----HHHH
Q 042690          218 VKEKPPLRPSL-----RIVA  232 (266)
Q Consensus       218 l~~~p~~Rps~-----~~il  232 (266)
                      |+.||.+||++     ++|+
T Consensus       577 L~~dP~~R~~~~~~~~~ei~  596 (674)
T 3pfq_A          577 MTKHPGKRLGCGPEGERDIK  596 (674)
T ss_dssp             SCSSSTTCTTCSTTHHHHHH
T ss_pred             ccCCHHHCCCCCCCcHHHHh
Confidence            99999999997     6664

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.8e-36  Score=249.80  Aligned_cols=209  Identities=15%  Similarity=0.214  Sum_probs=166.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|.+.+.||+|+||.||+|.+. .+++.|++|.+.                 ..++.++||||+++++++...+..++
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQ-LTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFM   88 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eccEEEEeeecCCCCeEEEEEEEC-CCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEE
Confidence            568999999999999999999985 578899999753                 26778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++......  ..
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~--~~  166 (276)
T 2h6d_A           89 VMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG--EF  166 (276)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-----
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCC--cc
Confidence            999999999999998765544      44556666677887777776     899999999999999999875422  22


Q ss_pred             cccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      .....+++.|+|||.+.+..+ +.++|+||||+++|+|++|+.||...               .+......+.+++.+||
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  246 (276)
T 2h6d_A          167 LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHML  246 (276)
T ss_dssp             ----------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHHHHHHc
Confidence            234567899999999887665 68999999999999999999998652               22334567889999999


Q ss_pred             hcCCCCCCCHHHHHHH
Q 042690          219 KEKPPLRPSLRIVALM  234 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~  234 (266)
                      +.||.+||+++++++.
T Consensus       247 ~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          247 QVDPLKRATIKDIREH  262 (276)
T ss_dssp             CSSGGGSCCHHHHHHS
T ss_pred             cCChhhCCCHHHHHhC
Confidence            9999999999999873

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-36  Score=253.15  Aligned_cols=217  Identities=20%  Similarity=0.304  Sum_probs=173.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE-EEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR-LLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~-~lv   86 (266)
                      .|.+.+.||+|+||.||+|.+..  ..+..+|+|.+.               .+++.++||||+++++++.+.+.. ++|
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            56677999999999999999742  233468888764               377788999999999999876654 899


Q ss_pred             EEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc---
Q 042690           87 YKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ---  151 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~---  151 (266)
                      |||+.+++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|+|||++.......   
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  181 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYS  181 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGC
T ss_pred             EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccc
Confidence            99999999999997633 233      44566677788888888877     8999999999999999998653221   


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVMIA  214 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~l~  214 (266)
                      ........++..|+|||.+.+..++.++||||||+++|+|++|..|+...                 .+......+.+++
T Consensus       182 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  261 (298)
T 3pls_A          182 VQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVM  261 (298)
T ss_dssp             SCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             cccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHHHHHH
Confidence            12223356788999999999989999999999999999999966554331                 1233456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .+||+.||.+||+++++++.|+.+.+.
T Consensus       262 ~~~l~~~p~~Rps~~~ll~~l~~~~~~  288 (298)
T 3pls_A          262 QQCWEADPAVRPTFRVLVGEVEQIVSA  288 (298)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999998654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.9e-36  Score=272.14  Aligned_cols=209  Identities=21%  Similarity=0.263  Sum_probs=175.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ....|.+.+.||+|+||.||+|.++ .+++.||+|++.                 .+++.++||||+++++++.+....+
T Consensus       183 ~~~~f~~~~~LG~G~fG~Vy~a~~~-~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  261 (543)
T 3c4z_A          183 GEDWFLDFRVLGRGGFGEVFACQMK-ATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLC  261 (543)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEC-CCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEE
Confidence            3568999999999999999999986 678899999874                 3677889999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +||||+++|+|.+++....    .+.      +..++..++.++|.++++|+     ||+++.+|.+||+|||++.....
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            9999999999999997543    233      34566777788888888887     99999999999999999987643


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~  210 (266)
                      .. .......||+.|+|||++.+..++.++|+|||||++|+|++|+.||....                   +......+
T Consensus       342 ~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~  420 (543)
T 3c4z_A          342 GQ-TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPAS  420 (543)
T ss_dssp             TC-CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred             CC-cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccCHHH
Confidence            22 22234578999999999999899999999999999999999999997521                   23455677


Q ss_pred             HHHHHHhhhcCCCCCCCH-----HHHH
Q 042690          211 VMIAIQFVKEKPPLRPSL-----RIVA  232 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~-----~~il  232 (266)
                      .+++.+||+.||.+||++     ++++
T Consensus       421 ~~li~~lL~~dP~~R~~~~~~~a~ei~  447 (543)
T 3c4z_A          421 KDFCEALLQKDPEKRLGFRDGSCDGLR  447 (543)
T ss_dssp             HHHHHHHSCSSGGGSCCCBTTBSHHHH
T ss_pred             HHHHHHhccCCHhHCCCCcccCHHHHH
Confidence            889999999999999975     5665

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.4e-37  Score=264.60  Aligned_cols=219  Identities=21%  Similarity=0.309  Sum_probs=166.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe-CCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE-QECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv   86 (266)
                      .|.+.+.||+|+||.||+|.+...  .+..+|+|.+.               .+++.++||||+++++++.. ++..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            577889999999999999997522  24567888764               26778899999999998754 5578899


Q ss_pred             EEcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           87 YKFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      |||+++++|.+++..... ++      +..++..++.++|..+++|+     ||+++.++.+||+|||+++........ 
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~  249 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDS  249 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------------
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccccccc
Confidence            999999999999975433 33      34566677788888888887     899999999999999999865322211 


Q ss_pred             --ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCCC----------------CccccchHHHHH
Q 042690          154 --TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQGS----------------DPKTLEKPVMIA  214 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~----------------~~~~~~~~~~l~  214 (266)
                        ......+++.|+|||.+.+..++.++||||||+++|+|+| |.+||....                +......+.+++
T Consensus       250 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li  329 (373)
T 3c1x_A          250 VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVM  329 (373)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             ccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence              1223456788999999988889999999999999999999 566775421                233456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      .+||+.||.+||+++++++.|+.+...-.
T Consensus       330 ~~cl~~dp~~RPs~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          330 LKCWHPKAEMRPSFSELVSRISAIFSTFI  358 (373)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999976543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=2.3e-36  Score=253.77  Aligned_cols=209  Identities=16%  Similarity=0.205  Sum_probs=174.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      -..|.+.+.||+|+||.||+|.+. .++..||+|.+.               .+++.++||||+++++++..+...++||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDN-RTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEEC-CCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            346899999999999999999975 678899999763               3777889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ||+++++|.+++... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++...... .....
T Consensus       100 e~~~~~~L~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~  177 (303)
T 3a7i_A          100 EYLGGGSALDLLEPG-PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT-QIKRN  177 (303)
T ss_dssp             ECCTTEEHHHHHTTS-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTT-BCCBC
T ss_pred             EeCCCCcHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcc-ccccC
Confidence            999999999999753 33      344566666788888777776     899999999999999999876432 22233


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCccccchHHHHHHHhhhc
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~~~~~~l~~~cl~~  220 (266)
                      ...++..|+|||.+.+..++.++||||||+++|+|++|+.||...                ........+.+++.+||+.
T Consensus       178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  257 (303)
T 3a7i_A          178 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNK  257 (303)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCS
T ss_pred             ccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCC
Confidence            456899999999999888999999999999999999999998652                1234456788999999999


Q ss_pred             CCCCCCCHHHHHHH
Q 042690          221 KPPLRPSLRIVALM  234 (266)
Q Consensus       221 ~p~~Rps~~~il~~  234 (266)
                      ||.+||+++++++.
T Consensus       258 dp~~Rps~~~ll~~  271 (303)
T 3a7i_A          258 EPSFRPTAKELLKH  271 (303)
T ss_dssp             SGGGSCCHHHHTTC
T ss_pred             ChhhCcCHHHHhhC
Confidence            99999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=3.2e-36  Score=268.93  Aligned_cols=207  Identities=16%  Similarity=0.162  Sum_probs=172.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||+||+|.++ .+++.||+|++.                ++++.++||||+++++++.+.+..++||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDR-ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEET-TTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEEC-CCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            37999999999999999999986 678899999863                3788999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec---CCCEEEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH---DYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~---~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++   .++.++|+|||++.....  ..
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~--~~  178 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ--NT  178 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC--C-
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCC--CC
Confidence            9999999999997766544      45666677788888888887     89995   456799999999986542  22


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~  214 (266)
                      ......||+.|+|||++.+ .++.++|||||||++|+|++|..||.....                   ...+..+.+++
T Consensus       179 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  257 (486)
T 3mwu_A          179 KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLI  257 (486)
T ss_dssp             ---CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHH
T ss_pred             ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHH
Confidence            3345678999999999876 589999999999999999999999976211                   22456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+||+.||.+|||+.++++.
T Consensus       258 ~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          258 RKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             HHHTCSSTTTSCCHHHHHHC
T ss_pred             HHHcCCChhhCcCHHHHhcC
Confidence            99999999999999999864

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=254.89  Aligned_cols=222  Identities=18%  Similarity=0.175  Sum_probs=175.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEe----CCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIE----QECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~----~~~~   83 (266)
                      +..+|.+.+.||+|+||.||++... .++..||+|++.              .+++.++||||+++++++..    ....
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  105 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGL-HDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEA  105 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEET-TTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEec-CCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCcee
Confidence            3467999999999999999999975 578899999652              37788999999999999873    3468


Q ss_pred             EEEEEcCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           84 LLVYKFMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ++||||+.+++|.+++...    ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++....
T Consensus       106 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          106 WLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQAC  185 (317)
T ss_dssp             EEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESC
T ss_pred             EEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcc
Confidence            8999999999999999752    3333      44566667788888887777     8999999999999999987643


Q ss_pred             ccccc--------ccccccCCCCcCCccccCCCC---CCcccchhhHHHHHHHHHhCCCcccC-----------------
Q 042690          149 INQTQ--------TLTGMRETKGYLPPEWFRNMP---VTVKVDVYSFGVMLLEIISCRCVERQ-----------------  200 (266)
Q Consensus       149 ~~~~~--------~~~~~~~~~~y~aPE~~~~~~---~~~~~Di~slG~i~~~l~tg~~p~~~-----------------  200 (266)
                      .....        ......+++.|+|||.+.+..   ++.++||||||+++|+|++|+.||..                 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~  265 (317)
T 2buj_A          186 IHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLS  265 (317)
T ss_dssp             EEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC--
T ss_pred             cccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccCC
Confidence            21110        112245689999999987654   68899999999999999999999843                 


Q ss_pred             -CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCCC
Q 042690          201 -GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPSP  244 (266)
Q Consensus       201 -~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~~  244 (266)
                       ...+.....+.+++.+||+.||.+||+++++++.|+.+...+..
T Consensus       266 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~  310 (317)
T 2buj_A          266 IPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG  310 (317)
T ss_dssp             CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred             CCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence             11234567889999999999999999999999999988765443

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.1e-36  Score=252.24  Aligned_cols=210  Identities=19%  Similarity=0.250  Sum_probs=173.5

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..||+|.+.               .+++.++||||+++++++.+++..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   84 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNR-VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   84 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEEC-CCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence            358999999999999999999976 578889999753               3677889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-ccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-QTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~~~  155 (266)
                      ||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++........ ...
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  164 (276)
T 2yex_A           85 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  164 (276)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             EecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcc
Confidence            9999999999997654443      44556666788887777776     89999999999999999987543222 223


Q ss_pred             ccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCCC------------------ccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGSD------------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------~~~~~~~~~l~~~  216 (266)
                      ....++..|+|||.+.+..+ +.++|+||||+++|+|++|+.||.....                  ......+.+++.+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  244 (276)
T 2yex_A          165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHK  244 (276)
T ss_dssp             CCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHH
T ss_pred             cCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHHHHHHH
Confidence            44668999999999887665 7789999999999999999999965221                  2345677889999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+||+++++++
T Consensus       245 ~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          245 ILVENPSARITIPDIKK  261 (276)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HCCCCchhCCCHHHHhc
Confidence            99999999999999876

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.1e-36  Score=259.42  Aligned_cols=209  Identities=16%  Similarity=0.222  Sum_probs=176.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+|.+.+.||+|+||.||++.+. .++..+++|.+.                 .+++.++||||+++++++.+.+..++
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDA-DTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            457999999999999999999986 667889998753                 36778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ...
T Consensus       119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-~~~  197 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD-GER  197 (335)
T ss_dssp             EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST-TCC
T ss_pred             EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccC-ccc
Confidence            999999999999998765544      44556666788888888777     899999999999999999875422 222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~  219 (266)
                      .....++..|+|||++.+..++.++||||||+++|+|++|+.||...               .+......+.+++.+||+
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  277 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQ  277 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTC
T ss_pred             ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcc
Confidence            33456899999999998888999999999999999999999998752               233445677899999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .||.+||+++++++
T Consensus       278 ~dp~~Rps~~ell~  291 (335)
T 2owb_A          278 TDPTARPTINELLN  291 (335)
T ss_dssp             SSGGGSCCGGGGGG
T ss_pred             CChhHCcCHHHHhc
Confidence            99999999999986

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=2.4e-36  Score=258.71  Aligned_cols=203  Identities=19%  Similarity=0.185  Sum_probs=168.1

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|.+.+.||+|+||.||+|.+. .++..||+|++.                 ++++.++||||+++++++..++..++||
T Consensus        55 ~y~~~~~lG~G~~g~Vy~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           55 LFSDLREIGHGSFGAVYFARDV-RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             heeeeeEEccCCCEEEEEEEEc-cCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            5889999999999999999975 578899999753                 3678899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+. |+|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.+||+|||++.....     .
T Consensus       134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~-----~  207 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-----A  207 (348)
T ss_dssp             ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-----B
T ss_pred             ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC-----C
Confidence            9997 5888888643 3343      34556666788888888877     89999999999999999976532     2


Q ss_pred             ccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------CccccchHHHHHH
Q 042690          156 TGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPKTLEKPVMIAI  215 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~~~~~~~~l~~  215 (266)
                      ....||+.|+|||++.   +..++.++||||||+++|+|++|+.||....                 .......+.+++.
T Consensus       208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  287 (348)
T 1u5q_A          208 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVD  287 (348)
T ss_dssp             CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHH
T ss_pred             CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence            2456899999999874   5678999999999999999999999986521                 2234567889999


Q ss_pred             HhhhcCCCCCCCHHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~  234 (266)
                      +||+.||.+||+++++++.
T Consensus       288 ~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          288 SCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             HHTCSSGGGSCCHHHHTTC
T ss_pred             HHcccChhhCcCHHHHhhC
Confidence            9999999999999999864

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=277.16  Aligned_cols=216  Identities=17%  Similarity=0.208  Sum_probs=171.3

Q ss_pred             ceeeee-ccCCCcceEEEEEEEcC-CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLK-KPCGGSFSTVYTGVLAP-GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~-~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++.+.+ .||+|+||.||+|.++. ..+..||+|++.               ++++.++||||+++++++.. +..++||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence            445555 89999999999998752 356679999875               37788999999999999876 5589999


Q ss_pred             EcCCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--
Q 042690           88 KFMHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                      ||+.+|+|.+++..... +.      +..++..++.++|..+++|+     |||++.++.+||+|||+++........  
T Consensus       415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~  494 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT  494 (613)
T ss_dssp             ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-------
T ss_pred             EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceee
Confidence            99999999999975432 33      44556667788888888887     999999999999999999875432221  


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~  216 (266)
                      ......+++.|+|||++.+..++.++||||||+++|||+| |+.||...                .+......+.+++.+
T Consensus       495 ~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~  574 (613)
T 2ozo_A          495 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSD  574 (613)
T ss_dssp             -------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             eccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHH
Confidence            1122345688999999988889999999999999999998 99999762                233456788899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      ||+.||.+||+++++++.|+.+...
T Consensus       575 cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          575 CWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             TTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             HcCCChhHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999988544

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=3.1e-36  Score=253.14  Aligned_cols=206  Identities=17%  Similarity=0.171  Sum_probs=173.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      ++|.+.+.||+|+||.||++.+. .+++.||+|.+.              .+++.++||||+++++++.+.+..++||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQR-LTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ccceeeeeccCCCCceEEEEEEC-CCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            47999999999999999999976 578889999753              378889999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeecccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      +++++|.+++.....++      +..++..++.++|..+++|+     ||++   +.++.++|+|||++.....   ...
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~---~~~  164 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN---GIM  164 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC---BTT
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC---Ccc
Confidence            99999999998766544      44556667788888888776     8999   7789999999999976432   122


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~  216 (266)
                      ....+++.|+|||.+.+..++.++||||||+++|+|++|..||....                   .......+.+++.+
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~  244 (304)
T 2jam_A          165 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICH  244 (304)
T ss_dssp             HHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             ccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHH
Confidence            33457999999999998889999999999999999999999986521                   12345678899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+||+++++++
T Consensus       245 ~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          245 LLEKDPNERYTCEKALS  261 (304)
T ss_dssp             HHCSSTTTSCCHHHHHT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999986

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=3.4e-36  Score=251.70  Aligned_cols=210  Identities=16%  Similarity=0.216  Sum_probs=176.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|.+.+.||+|+||.||++.+. .++..+|+|.+.                 .+++.++||||+++++++.+.+..++
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   92 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDA-DTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV   92 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEEC-CCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence            458999999999999999999986 567889998642                 36778899999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ...
T Consensus        93 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~  171 (294)
T 2rku_A           93 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD-GER  171 (294)
T ss_dssp             EEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST-TCC
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccC-ccc
Confidence            999999999999998765544      44556666688888777776     899999999999999999875422 222


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~  219 (266)
                      .....+++.|+|||.+.+..++.++|+||||+++|+|++|+.||...               .+......+.+++.+||+
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  251 (294)
T 2rku_A          172 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLIQKMLQ  251 (294)
T ss_dssp             BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTC
T ss_pred             cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHHHHHcc
Confidence            33456899999999998888999999999999999999999998652               233445678899999999


Q ss_pred             cCCCCCCCHHHHHHH
Q 042690          220 EKPPLRPSLRIVALM  234 (266)
Q Consensus       220 ~~p~~Rps~~~il~~  234 (266)
                      .||.+||+++++++.
T Consensus       252 ~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          252 TDPTARPTINELLND  266 (294)
T ss_dssp             SSGGGSCCGGGGGGS
T ss_pred             cChhhCcCHHHHhhC
Confidence            999999999999863

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=257.90  Aligned_cols=219  Identities=12%  Similarity=0.077  Sum_probs=177.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCC-------CcceeeeeeHH---------HHhhhcCCCceee---------------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPG-------DKTNIGVKKLD---------KVVHVAHHKNLVC---------------   72 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~-------~~~~vaiK~~~---------~~l~~~~h~~iv~---------------   72 (266)
                      ++|.+.+.||+|+||.||+|.+...       .+..||+|.+.         ++++.++||||++               
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            5899999999999999999998632       47899999764         4788889999987               


Q ss_pred             eeeEEEe-CCeEEEEEEcCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC--EE
Q 042690           73 LLGYHIE-QECRLLVYKFMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF--TV  136 (266)
Q Consensus        73 ~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~--~~  136 (266)
                      +++++.. +...++||||+ +++|.+++...  ..++      +..++..++.++|..+++|+     ||+++.++  .+
T Consensus       122 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~  200 (352)
T 2jii_A          122 CMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQV  200 (352)
T ss_dssp             CCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEE
T ss_pred             hhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceE
Confidence            6777766 67889999999 89999999865  4444      44556666788888888887     89999998  89


Q ss_pred             EEeecCcceeecccccc------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------
Q 042690          137 ETSDLGLAKLLMINQTQ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------  203 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------  203 (266)
                      +|+|||++.........      ......+|+.|+|||.+.+..++.++||||||+++|+|++|+.||.....       
T Consensus       201 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~  280 (352)
T 2jii_A          201 TLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMK  280 (352)
T ss_dssp             EECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHH
T ss_pred             EEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHH
Confidence            99999999875432211      11335789999999999988899999999999999999999999976320       


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                                         ......+.+++.+||+.||.+||+++++++.|+.+.+...
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~  339 (352)
T 2jii_A          281 QKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR  339 (352)
T ss_dssp             HHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence                               1235778899999999999999999999999999976543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.9e-37  Score=274.62  Aligned_cols=211  Identities=18%  Similarity=0.176  Sum_probs=176.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +|.+.+.||+|+||.||+|.+. .++..||+|++.                 .+++.++||||+++++++.+.+..++||
T Consensus        27 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           27 RYKGQRVLGKGSFGEVILCKDK-ITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ceEEeeEEecCCCEEEEEEEEC-CCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            6999999999999999999976 678899999752                 3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+.+++|.+++.....++      +..++..++.++|.++++|+     ||++   +.++.++|+|||++......  .
T Consensus       106 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~--~  183 (484)
T 3nyv_A          106 EVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS--K  183 (484)
T ss_dssp             CCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC--C
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc--c
Confidence            9999999999998766654      45666677788888888887     8999   56789999999999865422  2


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~  214 (266)
                      ......||+.|+|||++.+ .++.++||||||+++|+|++|..||.....                   ...+..+.+++
T Consensus       184 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li  262 (484)
T 3nyv_A          184 KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLI  262 (484)
T ss_dssp             SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHH
T ss_pred             ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHH
Confidence            2334568999999998876 689999999999999999999999976211                   23456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH--HHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL--MLQSIL  239 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~--~l~~~~  239 (266)
                      .+||+.||.+|||++++++  .++...
T Consensus       263 ~~~L~~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          263 RKMLTYVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             HHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred             HHHCCCChhHCcCHHHHhhChhhcccc
Confidence            9999999999999999985  355443

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=257.35  Aligned_cols=217  Identities=21%  Similarity=0.270  Sum_probs=175.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEc---CCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCC--eEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLA---PGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQE--CRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~---~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~--~~~   84 (266)
                      .+|.+.+.||+|+||.||++.+.   ..++..||+|++.              ++++.++||||+++++++...+  ..+
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence            47999999999999999999852   3578899999864              3778889999999999986544  688


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      +||||+++++|.+++.... .++      +..++..++..+|..+++|+     ||+++.++.++|+|||++........
T Consensus       121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~  200 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE  200 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCS
T ss_pred             EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhcccccc
Confidence            9999999999999998653 233      34556666778887777776     89999999999999999987643322


Q ss_pred             c--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------------------
Q 042690          153 Q--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------------------  201 (266)
Q Consensus       153 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------------------  201 (266)
                      .  ......++..|+|||.+.+..++.++||||||+++|+|+||..|+...                             
T Consensus       201 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (326)
T 2w1i_A          201 YYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG  280 (326)
T ss_dssp             EEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCC
Confidence            1  122345677899999998888899999999999999999998876421                             


Q ss_pred             ---CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          202 ---SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       202 ---~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                         .+...+..+.+++.+||+.||.+||++.++++.|+.+.+
T Consensus       281 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          281 RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence               123345678899999999999999999999999998864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=4e-36  Score=249.10  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=171.6

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .|.+.+.||+|+||.||+|.+. .++..+++|++.              ++++.++||||+++++++.+.+..++||||+
T Consensus        10 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A           10 YYTLENTIGRGSWGEVKIAVQK-GTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             HEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             hEEeeeEEeecCCEEEEEEEeC-CCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence            6899999999999999999976 667788888753              4788899999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeeccccccccc
Q 042690           91 HNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        91 ~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      ++++|.+++.....++      +..++..++.++|..+++|+     ||++   +.++.++|+|||++.....  .....
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~--~~~~~  166 (277)
T 3f3z_A           89 TGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP--GKMMR  166 (277)
T ss_dssp             CSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT--TSCBC
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC--ccchh
Confidence            9999999998766544      44556666688887777776     8999   7889999999999987542  22334


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------Cc----cccchHHHHHHHh
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------DP----KTLEKPVMIAIQF  217 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~~----~~~~~~~~l~~~c  217 (266)
                      ...+|+.|+|||.+.+. ++.++||||||+++|+|++|+.||....               +.    .....+.+++.+|
T Consensus       167 ~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  245 (277)
T 3f3z_A          167 TKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRL  245 (277)
T ss_dssp             CCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHH
T ss_pred             ccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHH
Confidence            45689999999988764 8999999999999999999999997522               11    3456788999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.||.+||++.++++
T Consensus       246 l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          246 LTKSPKQRITSLQALE  261 (277)
T ss_dssp             TCSSTTTSCCHHHHTT
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999999985

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-36  Score=257.88  Aligned_cols=207  Identities=17%  Similarity=0.201  Sum_probs=163.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCC--CceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHH--KNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h--~~iv~~~~~~~~~~~~~l   85 (266)
                      ..|.+.+.||+|+||.||++...  +++.||+|++.                .+++.++|  |||+++++++.+++..++
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNE--KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECT--TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeC--CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            47999999999999999999974  68889999753                36677776  999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      ||| +.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++ ++.++|+|||++......... 
T Consensus        87 v~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~  164 (343)
T 3dbq_A           87 VME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSV  164 (343)
T ss_dssp             EEC-CCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-------
T ss_pred             EEe-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccc
Confidence            999 45779999998766654      44566677788888888887     89997 678999999999876433222 


Q ss_pred             ccccccCCCCcCCccccCC-----------CCCCcccchhhHHHHHHHHHhCCCcccCC------------------CCc
Q 042690          154 TLTGMRETKGYLPPEWFRN-----------MPVTVKVDVYSFGVMLLEIISCRCVERQG------------------SDP  204 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~i~~~l~tg~~p~~~~------------------~~~  204 (266)
                      ......||+.|+|||++.+           ..++.++||||||+++|+|++|+.||...                  .+.
T Consensus       165 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  244 (343)
T 3dbq_A          165 VKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPD  244 (343)
T ss_dssp             -----CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCC
T ss_pred             cCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcc
Confidence            2234678999999998754           56889999999999999999999999751                  122


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .....+.+++.+||+.||.+||++.++++.
T Consensus       245 ~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          245 IPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence            233568899999999999999999999853

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.6e-36  Score=253.02  Aligned_cols=219  Identities=19%  Similarity=0.204  Sum_probs=168.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCC--cceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGD--KTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~--~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      ..+|.+.+.||+|+||.||+|.+...+  ...||+|.+.                 .+++.++||||+++++++..+. .
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence            458999999999999999999975333  3468998764                 2677889999999999987665 7


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||+.+++|.+++.... .+      .+..++..++.++|.++++|+     ||+++.++.++|+|||++.......
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  175 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND  175 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred             eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccc
Confidence            89999999999999997542 23      344566667788888877776     8999999999999999998764322


Q ss_pred             cc--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC-----------------CCccccchHH
Q 042690          152 TQ--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG-----------------SDPKTLEKPV  211 (266)
Q Consensus       152 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~-----------------~~~~~~~~~~  211 (266)
                      ..  ......++..|+|||.+.+..++.++||||||+++|+|++ |+.||...                 .+......+.
T Consensus       176 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  255 (291)
T 1u46_A          176 DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIY  255 (291)
T ss_dssp             CEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHH
T ss_pred             cchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcCHHHH
Confidence            21  2223456778999999988888999999999999999999 99998651                 1234556788


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      +++.+||+.||.+||++.++++.|+......
T Consensus       256 ~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  286 (291)
T 1u46_A          256 NVMVQCWAHKPEDRPTFVALRDFLLEAQPTD  286 (291)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             HHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence            9999999999999999999999999886543

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=6.9e-37  Score=259.78  Aligned_cols=221  Identities=20%  Similarity=0.239  Sum_probs=174.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      ..++|.+.+.||+|+||.||+|.+.    ..++..||+|.+.               .+++.++||||+++++++.....
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            3468999999999999999999852    2467789999863               36778899999999999999889


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCC-------CC------HHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeec
Q 042690           83 RLLVYKFMHNRSISSLLYECLR-------PT------WQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDL  141 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~-------~~------~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Df  141 (266)
                      .++||||+++++|.+++.....       +.      +..++..++.++|..+++|+     ||+++.   +..++|+||
T Consensus       108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Df  187 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDF  187 (327)
T ss_dssp             CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred             cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECcc
Confidence            9999999999999999986532       32      44566667788888888877     899984   446999999


Q ss_pred             Ccceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CC
Q 042690          142 GLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SD  203 (266)
Q Consensus       142 g~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~  203 (266)
                      |++........ .......+++.|+|||.+.+..++.++||||||+++|+|+| |..||...                .+
T Consensus       188 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~  267 (327)
T 2yfx_A          188 GMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPP  267 (327)
T ss_dssp             HHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCC
T ss_pred             ccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCCCCC
Confidence            99975432221 12233557889999999888889999999999999999998 88888652                22


Q ss_pred             ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          204 PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       204 ~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ......+.+++.+||+.||.+||++.++++.|+.+...+
T Consensus       268 ~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          268 KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence            345567889999999999999999999999999987654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=4.1e-36  Score=250.35  Aligned_cols=206  Identities=18%  Similarity=0.216  Sum_probs=165.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.|.+.+.||+|+||.||++..+ .++..+++|.+.               ++++.++||||+++++++.+....++|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEER-SSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             hheeecceeccCCCeEEEEEEEc-cCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence            37999999999999999999976 678888998754               37888999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc----CCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeeccc
Q 042690           89 FMHNRSISSLLYEC----LRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        89 ~~~~~~L~~~l~~~----~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      |+++++|.+++...    ..++      +..++..++.++|..+++|+     ||++   +.++.++|+|||++......
T Consensus       101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~  180 (285)
T 3is5_A          101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD  180 (285)
T ss_dssp             CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----
T ss_pred             eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCc
Confidence            99999999998643    3333      44566677788888888877     8999   45678999999999865422


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVM  212 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~  212 (266)
                        .......+++.|+|||.+.+ .++.++||||||+++|+|++|+.||....                  .......+.+
T Consensus       181 --~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (285)
T 3is5_A          181 --EHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVD  257 (285)
T ss_dssp             --------CTTGGGCCHHHHTT-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHH
T ss_pred             --ccCcCcccccCcCChHHhcc-CCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHH
Confidence              22334568999999998764 68899999999999999999999997521                  1124567889


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+||+.||.+||+++++++
T Consensus       258 li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          258 LLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             HHHHHTCSCTTTSCCHHHHHT
T ss_pred             HHHHHccCChhhCcCHHHHhc
Confidence            999999999999999999985

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.4e-36  Score=269.21  Aligned_cols=205  Identities=16%  Similarity=0.189  Sum_probs=169.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .|.+.+.||+|+||.||+|.++ .++..+|+|.+.                .+++.++||||+++++++.+.+..++|||
T Consensus        38 ~y~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           38 MYQRVKKLGSGAYGEVLLCRDK-VTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HEEEEEEEECC---EEEEEEET-TTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CeEEeeEEecCCCEEEEEEEEC-CCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            6999999999999999999986 678889998753                37888999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC---CEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY---FTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~---~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+.+++|.+++.....++      +..++..++.++|..+++|+     ||+++..   +.+||+|||++......  ..
T Consensus       117 ~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~--~~  194 (494)
T 3lij_A          117 CYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ--KK  194 (494)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT--BC
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC--cc
Confidence            999999999988765544      45666677788888888877     8999764   55999999999876432  23


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~  215 (266)
                      .....||+.|+|||++.+ .++.++||||+||++|+|++|..||.....                   ...+..+.+++.
T Consensus       195 ~~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  273 (494)
T 3lij_A          195 MKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIK  273 (494)
T ss_dssp             BCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHH
T ss_pred             ccccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHH
Confidence            345678999999998864 689999999999999999999999976221                   124567889999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+|||+.++++
T Consensus       274 ~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          274 QMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             HHTCSSTTTSCCHHHHHT
T ss_pred             HHCCCChhhCccHHHHhc
Confidence            999999999999999884

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=3.4e-36  Score=254.13  Aligned_cols=208  Identities=17%  Similarity=0.127  Sum_probs=163.4

Q ss_pred             ceeee-eccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhh-cCCCceeeeeeEEEeCCeEEEEEE
Q 042690           25 HIYSL-KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHV-AHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        25 ~~~~~-~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~-~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .|.+. +.||+|+||.||+|.+. .++..||+|++.              .+++. .+||||+++++++.+++..++|||
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINL-ITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECS-SSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEc-CCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            46664 78999999999999975 678899999863              24555 579999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE---EEEeecCcceeecccc---
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT---VETSDLGLAKLLMINQ---  151 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~---~~l~Dfg~a~~~~~~~---  151 (266)
                      |+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.   ++|+|||++.......   
T Consensus        92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  171 (316)
T 2ac3_A           92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS  171 (316)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---------
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc
Confidence            999999999998765544      44556667788888888877     899998776   9999999987653211   


Q ss_pred             ---ccccccccCCCCcCCccccCC-----CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------
Q 042690          152 ---TQTLTGMRETKGYLPPEWFRN-----MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------  203 (266)
Q Consensus       152 ---~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------  203 (266)
                         ........||+.|+|||++.+     ..++.++|||||||++|+|++|+.||.....                    
T Consensus       172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  251 (316)
T 2ac3_A          172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFE  251 (316)
T ss_dssp             ----------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHH
T ss_pred             cccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHH
Confidence               111223458999999998864     4578899999999999999999999965321                    


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    ......+.+++.+||+.||.+||+++++++
T Consensus       252 ~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          252 SIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence                          123456789999999999999999999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4e-36  Score=249.78  Aligned_cols=215  Identities=16%  Similarity=0.214  Sum_probs=174.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +|.+.+.||+|+||.||++.+. .+++.+|+|.+.                    .+++.++||||+++++++.+....+
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            6 HYEMGEELGSGQFAIVRKCRQK-GTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhHHhhcccCceEEEEEEEc-CCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            6899999999999999999986 578889998642                    3678899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC----EEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF----TVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~----~~~l~Dfg~a~~~~~  149 (266)
                      +||||+++++|.+++.....++      +..++..++.++|..+++|+     ||+++.++    .++|+|||++.....
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~  164 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA  164 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence            9999999999999998665544      44556666688887777776     89998877    899999999987542


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~  210 (266)
                      .  .......+++.|+|||.+.+..++.++|+||||+++|+|++|..||.....                   ......+
T Consensus       165 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (283)
T 3bhy_A          165 G--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELA  242 (283)
T ss_dssp             ---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHH
T ss_pred             C--CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHH
Confidence            2  222345689999999999988899999999999999999999999865221                   2234567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH--HHHHHHhCC
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL--MLQSILEVP  242 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~~~  242 (266)
                      .+++.+||+.||.+||++.++++  .++......
T Consensus       243 ~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~  276 (283)
T 3bhy_A          243 KDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRN  276 (283)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHCC
T ss_pred             HHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHHh
Confidence            88999999999999999999986  466655443

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.5e-36  Score=257.85  Aligned_cols=212  Identities=18%  Similarity=0.253  Sum_probs=169.6

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe-----
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE-----   79 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~-----   79 (266)
                      +..++|.+.+.||+|+||.||+|.+. .+++.||+|++.                .+++.++||||+++++++..     
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   92 (351)
T 3mi9_A           14 DEVSKYEKLAKIGQGTFGEVFKARHR-KTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPY   92 (351)
T ss_dssp             CBGGGEEEEEECSSCSTTSEEEEEET-TTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC----
T ss_pred             ccccceeEEEEEecCCCcEEEEEEEC-CCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccc
Confidence            45779999999999999999999986 678899999653                47889999999999999877     


Q ss_pred             ---CCeEEEEEEcCCCCCHHHHHhhc-CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcc
Q 042690           80 ---QECRLLVYKFMHNRSISSLLYEC-LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLA  144 (266)
Q Consensus        80 ---~~~~~lv~e~~~~~~L~~~l~~~-~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a  144 (266)
                         .+..++||||+.+ +|.+.+... ..+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++
T Consensus        93 ~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  171 (351)
T 3mi9_A           93 NRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLA  171 (351)
T ss_dssp             ----CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             ccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence               3468999999986 777777643 333      344566677788888887776     999999999999999999


Q ss_pred             eeeccc---cccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------cc
Q 042690          145 KLLMIN---QTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------PK  205 (266)
Q Consensus       145 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------~~  205 (266)
                      ......   .........+|+.|+|||++.+ ..++.++|||||||++|+|+||+.||.....               +.
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~  251 (351)
T 3mi9_A          172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPE  251 (351)
T ss_dssp             EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTT
T ss_pred             ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChh
Confidence            875422   1222344678999999998876 4579999999999999999999999875221               00


Q ss_pred             --------------------------------ccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          206 --------------------------------TLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       206 --------------------------------~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                      ....+.+++.+||+.||.+||+++++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          252 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence                                            13347789999999999999999998863

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=6.5e-36  Score=249.51  Aligned_cols=205  Identities=20%  Similarity=0.282  Sum_probs=167.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe----CCeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE----QECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~----~~~~   83 (266)
                      ..|.+.+.||+|+||.||+|.+. .++..|++|.+.                .+++.++||||+++++++..    ....
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  104 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDT-ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEec-CCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence            35888899999999999999976 678888888753                36778899999999999875    3458


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcC--cccc-----ceeec-CCCEEEEeecCcceeecc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTR--ALAC-----RILLH-DYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~--~~h~-----nili~-~~~~~~l~Dfg~a~~~~~  149 (266)
                      ++||||+++++|.+++.....+.      +..++..++.++|..+  ++|+     ||+++ .++.++|+|||++.....
T Consensus       105 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence            99999999999999998765544      4456666778888777  7776     89997 789999999999975432


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPV  211 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~  211 (266)
                         .......+++.|+|||.+.+ .++.++||||||+++|+|++|+.||....                  +......+.
T Consensus       185 ---~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  260 (290)
T 1t4h_A          185 ---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVK  260 (290)
T ss_dssp             ---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHH
T ss_pred             ---cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHH
Confidence               22234568999999998875 58899999999999999999999997511                  112335688


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +++.+||+.||.+||+++++++
T Consensus       261 ~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          261 EIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHccCChhhCCCHHHHhh
Confidence            9999999999999999999885

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-36  Score=258.50  Aligned_cols=209  Identities=20%  Similarity=0.212  Sum_probs=168.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .++|.+.+.||+|+||.||+|.+. .+++.||+|++.                   ++++.++||||+++++++...+..
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDK-NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECS-SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             hcccEEEeEEeecCCEEEEEEEEC-CCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            468999999999999999999975 568899999764                   367788999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||+++ +|.+++.....       ..+..++..++.++|..+++|+     ||+++.++.++|+|||++..... .
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~-~  165 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS-P  165 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS-C
T ss_pred             EEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccC-C
Confidence            999999986 89998875432       2355667777788888888887     89999999999999999986542 2


Q ss_pred             ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                      ........+|+.|+|||++.+. .++.++||||||+++|+|++|.+||.....                           
T Consensus       166 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  245 (346)
T 1ua2_A          166 NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPD  245 (346)
T ss_dssp             CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTT
T ss_pred             cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcc
Confidence            2233446789999999988654 478999999999999999999988865210                           


Q ss_pred             ----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                      ......+.+++.+||+.||.+|||++++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          246 YVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             CCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                            1223567889999999999999999999864

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.3e-36  Score=267.96  Aligned_cols=209  Identities=18%  Similarity=0.203  Sum_probs=156.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC-----Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ-----EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~-----~~   82 (266)
                      ++|.+.+.||+|+||+||+|.+. .++..||+|++.                .+++.++||||+++++++...     ..
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDK-LEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             TTEEECCC-------CEEEEEEC-C--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCeEEeeEeeecCCeEEEEEEEC-CCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            57999999999999999999976 678899999653                378889999999999998543     46


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .|+||||+. ++|.+++.....+.      +..++..++.++|..+++|+     |||++.++.+||+|||+++......
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~  210 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPE  210 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCT
T ss_pred             EEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCcc
Confidence            899999985 59999998766544      45667777788998888887     9999999999999999998753211


Q ss_pred             c--------------------------cccccccCCCCcCCcccc-CCCCCCcccchhhHHHHHHHHHh-----------
Q 042690          152 T--------------------------QTLTGMRETKGYLPPEWF-RNMPVTVKVDVYSFGVMLLEIIS-----------  193 (266)
Q Consensus       152 ~--------------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~i~~~l~t-----------  193 (266)
                      .                          .......||+.|+|||++ .+..++.++|||||||++|||+|           
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~  290 (458)
T 3rp9_A          211 NGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHAD  290 (458)
T ss_dssp             TCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGG
T ss_pred             ccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccccccccc
Confidence            1                          122345789999999975 46679999999999999999999           


Q ss_pred             CCCcccCCC------------------------------------------------------------------Ccccc
Q 042690          194 CRCVERQGS------------------------------------------------------------------DPKTL  207 (266)
Q Consensus       194 g~~p~~~~~------------------------------------------------------------------~~~~~  207 (266)
                      |+++|++..                                                                  .+...
T Consensus       291 ~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  370 (458)
T 3rp9_A          291 RGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASS  370 (458)
T ss_dssp             CCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSC
T ss_pred             ccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCC
Confidence            555554321                                                                  01225


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ..+.+++.+||..||.+|||++|+++.
T Consensus       371 ~~~~dLl~~mL~~dP~~R~t~~e~L~H  397 (458)
T 3rp9_A          371 ADAIHLLKRMLVFNPNKRITINECLAH  397 (458)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHHhccCccccCCHHHHhcC
Confidence            667899999999999999999999863

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.5e-36  Score=253.89  Aligned_cols=210  Identities=32%  Similarity=0.436  Sum_probs=169.1

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ...+.||+|+||.||+|.+   ++..+|+|++.                  .+++.++||||+++++++.+.+..++|||
T Consensus        34 ~~~~~lg~G~~g~Vy~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           34 VGGNKMGEGGFGVVYKGYV---NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             TTCCEEEECSSEEEEEEES---SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             ccCCccccCCCeEEEEEEE---CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEE
Confidence            3448899999999999996   57788888653                  37788999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc---CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           89 FMHNRSISSLLYEC---LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        89 ~~~~~~L~~~l~~~---~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      |+++++|.+++...   ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++......... 
T Consensus       111 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~  190 (307)
T 2nru_A          111 YMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTV  190 (307)
T ss_dssp             CCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCE
T ss_pred             ecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccc
Confidence            99999999999742   2244      34455666678887777776     899999999999999999875432222 


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc-----------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP-----------------------------  204 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-----------------------------  204 (266)
                      ......|++.|+|||.+.+ .++.++||||||+++|+|++|..||......                             
T Consensus       191 ~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (307)
T 2nru_A          191 MTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDAD  269 (307)
T ss_dssp             ECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCC
T ss_pred             cccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccc
Confidence            2234568999999998865 4788999999999999999999998753221                             


Q ss_pred             -cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          205 -KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       205 -~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                       .....+.+++.+||+.||.+||+++++++.|+.+..
T Consensus       270 ~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence             122456789999999999999999999999998753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=6e-36  Score=254.04  Aligned_cols=210  Identities=16%  Similarity=0.216  Sum_probs=172.5

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC-CCceeeeeeEEEe--CCeEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH-HKNLVCLLGYHIE--QECRLLV   86 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~-h~~iv~~~~~~~~--~~~~~lv   86 (266)
                      ++.++|.+.+.||+|+||.||+|.+. .++..||+|.+.           .+++.++ ||||+++++++.+  ....++|
T Consensus        33 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           33 GNQDDYQLVRKLGRGKYSEVFEAINI-TNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             EEGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             cCCCceEEEEEecccCCeEEEEEEEC-CCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            44578999999999999999999976 678899999864           3777886 9999999999987  5678999


Q ss_pred             EEcCCCCCHHHHHhhcCC---CCHHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeecccccccccc
Q 042690           87 YKFMHNRSISSLLYECLR---PTWQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |||+.+++|.+++.....   ..+..++..++.++|..+++|+     ||+++.++ .++|+|||++......  .....
T Consensus       112 ~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~--~~~~~  189 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG--QEYNV  189 (330)
T ss_dssp             EECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT--CCCCS
T ss_pred             EeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC--Ccccc
Confidence            999999999999864221   3455677777888888888877     89999776 9999999999875422  22344


Q ss_pred             ccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..++..|+|||.+.+ ..++.++|||||||++|+|++|+.||.....                                 
T Consensus       190 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (330)
T 3nsz_A          190 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFN  269 (330)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHH
T ss_pred             ccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchh
Confidence            568999999998876 6689999999999999999999999843211                                 


Q ss_pred             --------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                          ......+.+++.+||+.||.+|||++++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          270 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence                                114567889999999999999999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=264.46  Aligned_cols=215  Identities=15%  Similarity=0.146  Sum_probs=175.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC--eEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE--CRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~--~~~lv   86 (266)
                      ..|.+.+.||+|+||.||+|.+. .++..||+|++.               ++++.++||||+++++++...+  ..++|
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHK-KTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEEC-CCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            47999999999999999999986 668899999754               3788899999999999998755  67999


Q ss_pred             EEcCCCCCHHHHHhhcCC---CC------HHHHHHHHHHHhhhcCcccc-----ceee----cCCCEEEEeecCcceeec
Q 042690           87 YKFMHNRSISSLLYECLR---PT------WQQRMQDCIRDCWRTRALAC-----RILL----HDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~---~~------~~~~l~~~~~~~~~~~~~h~-----nili----~~~~~~~l~Dfg~a~~~~  148 (266)
                      |||+++++|.+++.....   +.      +..++..++.++|..+++|+     ||++    +.++.+||+|||+++...
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            999999999999975432   33      44566667788888777776     8998    788889999999998764


Q ss_pred             cccccccccccCCCCcCCccccCC--------CCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRN--------MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------  203 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------  203 (266)
                      .  ........||..|+|||++.+        ..++.++|||||||++|+|++|+.||.....                 
T Consensus       168 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~  245 (396)
T 4eut_A          168 D--DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPS  245 (396)
T ss_dssp             C--GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCT
T ss_pred             C--CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCc
Confidence            3  223334668999999998764        4577899999999999999999999864111                 


Q ss_pred             ---------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          204 ---------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       204 ---------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                                 ......+.+++.+||+.||.+||+++++++.++.+...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          246 GAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             TCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             ccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence                                       11233566899999999999999999999999998764

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=254.67  Aligned_cols=228  Identities=15%  Similarity=0.175  Sum_probs=174.2

Q ss_pred             CchhhhhhHhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeee
Q 042690           11 DPSQYENRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLL   74 (266)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~   74 (266)
                      .+..+...+.-..++|.+.+.||+|+||.||+|.+.  .  .+++|.+.                .+++.++||||++++
T Consensus        20 ~~~~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~--~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   95 (319)
T 2y4i_B           20 QTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWH--G--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM   95 (319)
T ss_dssp             --CCCGGGSSSCCSCEECCCBCCCSSSSEEEEEEES--S--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCC
T ss_pred             ccccccccccCCHHHeEEeeEeccCCceEEEEEEEc--C--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence            333444445556789999999999999999999974  1  36666654                478888999999999


Q ss_pred             eEEEeCCeEEEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecC
Q 042690           75 GYHIEQECRLLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLG  142 (266)
Q Consensus        75 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg  142 (266)
                      +++.+....++||||+++++|.+++.... .+      .+..++..++.++|.++++|+     ||+++ ++.++|+|||
T Consensus        96 ~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg  174 (319)
T 2y4i_B           96 GACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFG  174 (319)
T ss_dssp             EEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCS
T ss_pred             EEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecC
Confidence            99999999999999999999999998654 23      345666677788888888877     89998 6799999999


Q ss_pred             cceeeccc----cccccccccCCCCcCCccccCC---------CCCCcccchhhHHHHHHHHHhCCCcccCCC-------
Q 042690          143 LAKLLMIN----QTQTLTGMRETKGYLPPEWFRN---------MPVTVKVDVYSFGVMLLEIISCRCVERQGS-------  202 (266)
Q Consensus       143 ~a~~~~~~----~~~~~~~~~~~~~y~aPE~~~~---------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------  202 (266)
                      ++......    .........++..|+|||.+.+         ..++.++||||||+++|+|++|+.||....       
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~  254 (319)
T 2y4i_B          175 LFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQ  254 (319)
T ss_dssp             CCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHH
T ss_pred             CccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence            98764311    1112233458899999998764         357889999999999999999999987521       


Q ss_pred             ----------CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          203 ----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       203 ----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                                .......+.+++.+||+.||.+||++.++++.|+.+.+...
T Consensus       255 ~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~  305 (319)
T 2y4i_B          255 MGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR  305 (319)
T ss_dssp             HHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred             hccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence                      12345688999999999999999999999999999877654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.6e-37  Score=267.46  Aligned_cols=204  Identities=9%  Similarity=0.002  Sum_probs=164.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeee-------e
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLL-------G   75 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~-------~   75 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++..||+|++.                    +.++.++||||++++       +
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~  150 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQ-ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  150 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC--CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred             CceEEEcceeecCCCEEEEEEEEC-CCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence            357999999999999999999975 578899999863                    134455899999998       6


Q ss_pred             EEEeCCe-----------------EEEEEEcCCCCCHHHHHhhcCC-------------CCHHHHHHHHHHHhhhcCccc
Q 042690           76 YHIEQEC-----------------RLLVYKFMHNRSISSLLYECLR-------------PTWQQRMQDCIRDCWRTRALA  125 (266)
Q Consensus        76 ~~~~~~~-----------------~~lv~e~~~~~~L~~~l~~~~~-------------~~~~~~l~~~~~~~~~~~~~h  125 (266)
                      ++.+++.                 .++||||+ +|+|.+++.....             ..+..++..++.++|.++++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH  229 (377)
T 3byv_A          151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVH  229 (377)
T ss_dssp             EEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             hhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            6665532                 78999999 5799999985322             235567777778888888888


Q ss_pred             c-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCC-----------CCCcccchhhHHHHHH
Q 042690          126 C-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM-----------PVTVKVDVYSFGVMLL  189 (266)
Q Consensus       126 ~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----------~~~~~~Di~slG~i~~  189 (266)
                      +     |||++.++.+||+|||+++...    .......| +.|+|||++.+.           .++.++|||||||++|
T Consensus       230 rDikp~NIll~~~~~~kL~DFG~a~~~~----~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~  304 (377)
T 3byv_A          230 TYLRPVDIVLDQRGGVFLTGFEHLVRDG----ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIY  304 (377)
T ss_dssp             SCCCGGGEEECTTCCEEECCGGGCEETT----CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHH
T ss_pred             CCCCHHHEEEcCCCCEEEEechhheecC----CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHH
Confidence            7     9999999999999999998632    22334556 999999998876           7899999999999999


Q ss_pred             HHHhCCCcccCCC-----------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          190 EIISCRCVERQGS-----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       190 ~l~tg~~p~~~~~-----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      +|++|+.||....           .......+.+++.+||+.||.+||++.++++
T Consensus       305 elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          305 WIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             HHHHSSCCC------CCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             HHHHCCCCCcccccccchhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            9999999997622           2345567889999999999999999999985

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4.2e-36  Score=276.44  Aligned_cols=217  Identities=17%  Similarity=0.179  Sum_probs=174.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC--CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP--GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~--~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|.+.+.||+|+||.||+|.+..  ..+..+|+|...               .+++.++||||+++++++. ++..++
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l  467 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI  467 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence            4579999999999999999999853  235678998753               3777889999999999984 556899


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+++|+|.+++.... .++      +..++..++.++|.++++|+     ||+++.++.++|+|||+++........
T Consensus       468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~  547 (656)
T 2j0j_A          468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY  547 (656)
T ss_dssp             EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----
T ss_pred             EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcce
Confidence            999999999999997543 333      44566677788888888887     999999999999999999876433333


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~  216 (266)
                      ......+++.|+|||.+.+..++.++||||||+++|+|++ |..||...                .++.....+.+++.+
T Consensus       548 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~  627 (656)
T 2j0j_A          548 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTK  627 (656)
T ss_dssp             ------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHH
T ss_pred             eccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHH
Confidence            3334556789999999988889999999999999999997 88888651                234455788899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ||+.||.+||++.++++.|+.+.+
T Consensus       628 ~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          628 CWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCChhHCcCHHHHHHHHHHHHH
Confidence            999999999999999999998864

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.7e-36  Score=258.75  Aligned_cols=204  Identities=20%  Similarity=0.257  Sum_probs=163.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      ...|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDG-RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEET-TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEEC-CCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            357999999999999999999975 678899999773                3778899999999999997653     


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                       .+++||||+ +++|.+++.. ..+.      +..++..++.++|..+++|+     ||+++.++.+||+|||+++....
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  180 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADS  180 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             ceEEEEEecC-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeeccccccc
Confidence             469999999 7799999975 3333      45667777788888888887     89999999999999999987532


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                          ......+|+.|+|||++.+ ..++.++||||+||++++|++|+.||.+...                         
T Consensus       181 ----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~  256 (367)
T 1cm8_A          181 ----EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSD  256 (367)
T ss_dssp             ----SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCH
T ss_pred             ----ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhH
Confidence                2334568999999998876 6789999999999999999999999975211                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                           +.....+.+++.+||..||.+|||++++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          257 EAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence                                 123456788999999999999999999986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=8.3e-36  Score=267.32  Aligned_cols=219  Identities=15%  Similarity=0.205  Sum_probs=177.3

Q ss_pred             CchhhhhhHhccc-CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------------------HHh
Q 042690           11 DPSQYENRVFGSF-SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------------------KVV   62 (266)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------------------~~l   62 (266)
                      .|..+.....+.+ ..|.+.+.||+|+||+||+|.++ .++..+|+|.+.                           .++
T Consensus        22 ~~~~~~~~~~~~i~~~Y~~~~~lG~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l  100 (504)
T 3q5i_A           22 NPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEK-NGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLL  100 (504)
T ss_dssp             CGGGGCCEECSCGGGTEEEEEEEEC--CEEEEEEEET-TTCCEEEEEEEEC----------------CTHHHHHHHHHHH
T ss_pred             chhheeeccCCCcccceEEEeEecccCCeEEEEEEEC-CCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHH
Confidence            4444444444443 46999999999999999999986 677889998742                           367


Q ss_pred             hhcCCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec
Q 042690           63 HVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH  131 (266)
Q Consensus        63 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~  131 (266)
                      +.++||||+++++++.+....++|||||++++|.+++.....++      +..++..++.++|..+++|+     ||+++
T Consensus       101 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~  180 (504)
T 3q5i_A          101 KSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLE  180 (504)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEES
T ss_pred             HhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEe
Confidence            78899999999999999999999999999999999998766654      44566677788888888877     89999


Q ss_pred             CCC---EEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----
Q 042690          132 DYF---TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----  203 (266)
Q Consensus       132 ~~~---~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----  203 (266)
                      .++   .++|+|||++.....  ........||+.|+|||.+.+ .++.++||||+|+++|+|++|..||.....     
T Consensus       181 ~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~  257 (504)
T 3q5i_A          181 NKNSLLNIKIVDFGLSSFFSK--DYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIK  257 (504)
T ss_dssp             STTCCSSEEECCCTTCEECCT--TSCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             cCCCCccEEEEECCCCEEcCC--CCccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            876   699999999987643  223345678999999998874 689999999999999999999999976221     


Q ss_pred             --------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                    ...+..+.+++.+||+.||.+|||++++++
T Consensus       258 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          258 KVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             HHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                          234567889999999999999999999985

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=255.09  Aligned_cols=216  Identities=18%  Similarity=0.189  Sum_probs=158.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcC-CCceeeeeeEEEe--------CC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAH-HKNLVCLLGYHIE--------QE   81 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~-h~~iv~~~~~~~~--------~~   81 (266)
                      +|.+.+.||+|+||.||+|.+. .++..||+|++.              .+++.+. ||||+++++++..        ..
T Consensus        29 ~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           29 RLRVRRVLAEGGFAFVYEAQDV-GSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEECCSSEEEEEEEET-TTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             eEEEEEEEccCCceEEEEEEEC-CCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            7999999999999999999976 678899999762              2666775 9999999999842        34


Q ss_pred             eEEEEEEcCCCCCHHHHHhh---cCCCC------HHHHHHHHHHHhhhcC--cccc-----ceeecCCCEEEEeecCcce
Q 042690           82 CRLLVYKFMHNRSISSLLYE---CLRPT------WQQRMQDCIRDCWRTR--ALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~---~~~~~------~~~~l~~~~~~~~~~~--~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      .++++|||+. |+|.+++..   ...+.      +..++..++.++|..+  ++|+     ||+++.++.++|+|||++.
T Consensus       108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  186 (337)
T 3ll6_A          108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSAT  186 (337)
T ss_dssp             EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCB
T ss_pred             eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccce
Confidence            5889999996 599998864   23333      4455666678888777  7776     8999999999999999998


Q ss_pred             eecccccc-----------ccccccCCCCcCCcccc---CCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------
Q 042690          146 LLMINQTQ-----------TLTGMRETKGYLPPEWF---RNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------  202 (266)
Q Consensus       146 ~~~~~~~~-----------~~~~~~~~~~y~aPE~~---~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------  202 (266)
                      ........           ......+|+.|+|||++   .+..++.++||||||+++|+|++|+.||....         
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~  266 (337)
T 3ll6_A          187 TISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKY  266 (337)
T ss_dssp             CCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------C
T ss_pred             eccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCcc
Confidence            75432211           11134589999999988   56678999999999999999999999986521         


Q ss_pred             ----CccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          203 ----DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       203 ----~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                          .......+.+++.+||+.||.+||+++++++.|+.+....
T Consensus       267 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~  310 (337)
T 3ll6_A          267 SIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR  310 (337)
T ss_dssp             CCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             cCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence                2334466889999999999999999999999999996643

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=8.6e-36  Score=261.38  Aligned_cols=206  Identities=16%  Similarity=0.177  Sum_probs=162.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|++.                      .+++.++||||+++++++. .+
T Consensus       135 ~~y~~~~~LG~G~~g~V~~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~~  212 (419)
T 3i6u_A          135 DEYIMSKTLGSGACGEVKLAFER-KTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-AE  212 (419)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-SS
T ss_pred             ccEEEEeEEeeCCCeEEEEEEEC-CCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence            47999999999999999999976 678889998642                      3788899999999999975 45


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC---EEEEeecCcceee
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF---TVETSDLGLAKLL  147 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~---~~~l~Dfg~a~~~  147 (266)
                      ..++||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++   .+||+|||+++..
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~  292 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  292 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSC
T ss_pred             ceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceec
Confidence            6889999999999999987766654      34566677788888888887     89997554   5999999999875


Q ss_pred             ccccccccccccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------c
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------P  204 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~  204 (266)
                      ..  ........||+.|+|||++.+   ..++.++||||||+++|+|++|..||.....                    .
T Consensus       293 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~  370 (419)
T 3i6u_A          293 GE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWA  370 (419)
T ss_dssp             C-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHT
T ss_pred             CC--CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhc
Confidence            42  223334668999999998753   5678899999999999999999999975221                    1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .....+.+++.+||+.||.+||+++++++
T Consensus       371 ~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          371 EVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             TSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            23567788999999999999999999876

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=254.16  Aligned_cols=219  Identities=14%  Similarity=0.163  Sum_probs=176.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEE----cCCCcceeeeeeHH-----------HHhhhcC---CCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVL----APGDKTNIGVKKLD-----------KVVHVAH---HKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~~~vaiK~~~-----------~~l~~~~---h~~iv~~~~~~~~~~~~~   84 (266)
                      -..|.+.+.||+|+||.||+|.+    ....+..||+|++.           .+++.++   |+||+++++++..++..+
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~  143 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSV  143 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEE
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcE
Confidence            35699999999999999999952    22578899999865           2455555   999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhh-----cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecC-----------CCEEE
Q 042690           85 LVYKFMHNRSISSLLYE-----CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHD-----------YFTVE  137 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~-----~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~-----------~~~~~  137 (266)
                      +||||+++|+|.+++..     ...++      +..++..++.++|..+++|+     |||++.           ++.+|
T Consensus       144 lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~k  223 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLA  223 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEE
T ss_pred             EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEE
Confidence            99999999999999974     22333      45666677788888888887     999998           89999


Q ss_pred             EeecCcceeecc-ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------cc
Q 042690          138 TSDLGLAKLLMI-NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------PK  205 (266)
Q Consensus       138 l~Dfg~a~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------~~  205 (266)
                      |+|||+++.... ..........||+.|+|||++.+..++.++|||||||++|+|+||+.||.....           ..
T Consensus       224 l~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~  303 (365)
T 3e7e_A          224 LIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLP  303 (365)
T ss_dssp             ECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECSCCTTCS
T ss_pred             EeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeechhccccC
Confidence            999999976532 222334456799999999999998999999999999999999999998854211           11


Q ss_pred             ccchHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHHhC
Q 042690          206 TLEKPVMIAIQFVKEKPPLR-PSLRIVALMLQSILEV  241 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~R-ps~~~il~~l~~~~~~  241 (266)
                      ....+.+++..|++.+|.+| |++.++.+.|+.+...
T Consensus       304 ~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          304 HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence            24466789999999999998 6788999999998765

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.2e-36  Score=252.48  Aligned_cols=213  Identities=18%  Similarity=0.206  Sum_probs=169.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe--CCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE--QECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~--~~~~   83 (266)
                      ..++|.+.+.||+|+||.||++.+. .+++.+++|.+.                .+++.++||||+++++++..  ....
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   82 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRK-SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTL   82 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEE
T ss_pred             chhheeeehhccCCCCcEEEEEEEC-CCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceE
Confidence            3568999999999999999999986 678889998763                36788899999999998854  5678


Q ss_pred             EEEEEcCCCCCHHHHHhhcC----CCC------HHHHHHHHHHHhhhcC-----cccc-----ceeecCCCEEEEeecCc
Q 042690           84 LLVYKFMHNRSISSLLYECL----RPT------WQQRMQDCIRDCWRTR-----ALAC-----RILLHDYFTVETSDLGL  143 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~----~~~------~~~~l~~~~~~~~~~~-----~~h~-----nili~~~~~~~l~Dfg~  143 (266)
                      ++||||+++++|.+++....    .++      +..++..++.++|..+     ++|+     ||+++.++.++|+|||+
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~  162 (279)
T 2w5a_A           83 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL  162 (279)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCH
T ss_pred             EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCch
Confidence            99999999999999997532    133      3445555666666665     6665     99999999999999999


Q ss_pred             ceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC----------------CCcccc
Q 042690          144 AKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG----------------SDPKTL  207 (266)
Q Consensus       144 a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~----------------~~~~~~  207 (266)
                      +....... .......++..|+|||.+.+..++.++||||||+++|+|++|+.||...                .+....
T Consensus       163 ~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~  241 (279)
T 2w5a_A          163 ARILNHDT-SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYS  241 (279)
T ss_dssp             HHHC---C-HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCTTSC
T ss_pred             heeecccc-ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCcccC
Confidence            97654221 1122346799999999998888999999999999999999999998652                123345


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQ  236 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~  236 (266)
                      ..+.+++.+||+.||.+||+++++++.+.
T Consensus       242 ~~l~~li~~~l~~~p~~Rps~~~ll~~~~  270 (279)
T 2w5a_A          242 DELNEIITRMLNLKDYHRPSVEEILENPL  270 (279)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence            67889999999999999999999998654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.1e-35  Score=258.34  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=164.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC--CCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH--HKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~--h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .|.+.+.||+|+||.||++.+.  .++.||+|++.                .+++.++  ||||+++++++..++..++|
T Consensus        57 ~y~~~~~LG~G~fg~Vy~~~~~--~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv  134 (390)
T 2zmd_A           57 IYSILKQIGSGGSSKVFQVLNE--KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV  134 (390)
T ss_dssp             EEEEEEEEECCSSEEEEEEECT--TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             ceEEEEEEccCCCeEEEEEEcC--CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence            5999999999999999999975  48889999763                2666776  59999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-c
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-T  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-~  154 (266)
                      || +.+++|.+++.....+.      +..++..++.++|..+++|+     |||++ ++.+||+|||+++........ .
T Consensus       135 ~E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~  212 (390)
T 2zmd_A          135 ME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVV  212 (390)
T ss_dssp             EE-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC--------
T ss_pred             Ee-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCcccc
Confidence            99 56789999998766554      34566677788888888887     89995 589999999999876433222 2


Q ss_pred             cccccCCCCcCCccccCC-----------CCCCcccchhhHHHHHHHHHhCCCcccCCC------------------Ccc
Q 042690          155 LTGMRETKGYLPPEWFRN-----------MPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPK  205 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~  205 (266)
                      .....||+.|+|||++.+           ..++.++|||||||++|+|++|+.||....                  +..
T Consensus       213 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  292 (390)
T 2zmd_A          213 KDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDI  292 (390)
T ss_dssp             -CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCC
T ss_pred             CCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCcc
Confidence            334678999999998764           368899999999999999999999996521                  222


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      ....+.+++.+||+.||.+||++.++++.
T Consensus       293 ~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          293 PEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             chHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            34568899999999999999999999854

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=5.6e-36  Score=263.59  Aligned_cols=209  Identities=17%  Similarity=0.189  Sum_probs=166.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC-----C
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ-----E   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~-----~   81 (266)
                      -++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++...     .
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDK-NTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEET-TTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEEC-CCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            357999999999999999999986 678899999763                378889999999999998765     5


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ..|+||||+.+ +|.+++.....++      +..++..++.++|..+++|+     ||+++.++.+||+|||+++.....
T Consensus       104 ~~~lv~e~~~~-~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~  182 (432)
T 3n9x_A          104 ELYIVLEIADS-DLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSE  182 (432)
T ss_dssp             CEEEEEECCSE-EHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC---
T ss_pred             eEEEEEecCCc-CHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccccc
Confidence            68999999975 9999998765544      44566677788888888887     999999999999999999876432


Q ss_pred             cc---------------------cccccccCCCCcCCcccc-CCCCCCcccchhhHHHHHHHHHhCCCc-----------
Q 042690          151 QT---------------------QTLTGMRETKGYLPPEWF-RNMPVTVKVDVYSFGVMLLEIISCRCV-----------  197 (266)
Q Consensus       151 ~~---------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~Di~slG~i~~~l~tg~~p-----------  197 (266)
                      ..                     .......||+.|+|||++ .+..++.++|||||||++|+|++|..|           
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~  262 (432)
T 3n9x_A          183 KDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPL  262 (432)
T ss_dssp             ----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCS
T ss_pred             ccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccccccccccc
Confidence            21                     122456789999999985 566699999999999999999985433           


Q ss_pred             ccCCCC---------------------------------------------------------------ccccchHHHHH
Q 042690          198 ERQGSD---------------------------------------------------------------PKTLEKPVMIA  214 (266)
Q Consensus       198 ~~~~~~---------------------------------------------------------------~~~~~~~~~l~  214 (266)
                      |.+...                                                               +.....+.+++
T Consensus       263 f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl  342 (432)
T 3n9x_A          263 FPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLL  342 (432)
T ss_dssp             CCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHH
T ss_pred             CCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHH
Confidence            322110                                                               23456778999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+|||++++++
T Consensus       343 ~~mL~~dP~~R~ta~e~L~  361 (432)
T 3n9x_A          343 ESMLKFNPNKRITIDQALD  361 (432)
T ss_dssp             HHHSCSSTTTSCCHHHHHT
T ss_pred             HHHhcCCcccCCCHHHHhc
Confidence            9999999999999999986

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=4.3e-36  Score=259.36  Aligned_cols=208  Identities=19%  Similarity=0.194  Sum_probs=161.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC-----
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE-----   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~-----   81 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDA-ILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred             hhheeEeeeeEecCCEEEEEEEEC-CCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence            468999999999999999999975 678889999763                3777889999999999997654     


Q ss_pred             -eEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           82 -CRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        82 -~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                       ..++||||+.+ +|.+++.....    ..+..++..++.++|..+++|+     ||+++.++.+||+|||++.....  
T Consensus       103 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~--  179 (371)
T 2xrw_A          103 QDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--  179 (371)
T ss_dssp             CEEEEEEECCSE-EHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC--------
T ss_pred             cceEEEEEcCCC-CHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccc--
Confidence             68999999975 88888863211    2355667777788888888887     89999999999999999986532  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------  204 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------  204 (266)
                      ........+|+.|+|||++.+..++.++|||||||++|+|++|+.||......                           
T Consensus       180 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  259 (371)
T 2xrw_A          180 SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRT  259 (371)
T ss_dssp             ----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHH
T ss_pred             ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHH
Confidence            22233467899999999999888999999999999999999999999652210                           


Q ss_pred             ------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 ------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 ------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                    .....+.+++.+||+.||.+|||++++++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          260 YVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             HHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             HHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                                          003456789999999999999999999863

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=5.9e-36  Score=274.57  Aligned_cols=209  Identities=20%  Similarity=0.218  Sum_probs=169.0

Q ss_pred             eccCCCcceEEEEEEEc-CCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLA-PGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~-~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      +.||+|+||.||+|.+. ...+..||+|++.                .+++.++||||+++++++.. +..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            47999999999999764 2456789999764                37888999999999999864 458899999999


Q ss_pred             CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc--ccccccc
Q 042690           93 RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT--QTLTGMR  159 (266)
Q Consensus        93 ~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~  159 (266)
                      |+|.+++.....+.      +..++..++.++|.++++|+     |||++.++.+||+|||+++.......  .......
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~  533 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK  533 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------------
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCC
Confidence            99999998766554      44566667788888888887     99999999999999999987543222  1222345


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----------------CCccccchHHHHHHHhhhcCC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----------------SDPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----------------~~~~~~~~~~~l~~~cl~~~p  222 (266)
                      +++.|+|||++.+..++.++||||||+++|+|++ |+.||...                .+......+.+++.+||+.||
T Consensus       534 ~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP  613 (635)
T 4fl3_A          534 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDV  613 (635)
T ss_dssp             -CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             CceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCH
Confidence            6788999999988889999999999999999998 99999762                234456788999999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 042690          223 PLRPSLRIVALMLQSIL  239 (266)
Q Consensus       223 ~~Rps~~~il~~l~~~~  239 (266)
                      .+||+++++++.|+.+.
T Consensus       614 ~~RPs~~~l~~~L~~~~  630 (635)
T 4fl3_A          614 ENRPGFAAVELRLRNYY  630 (635)
T ss_dssp             TTSCCHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHHHHHH
Confidence            99999999999998864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=7.3e-36  Score=248.25  Aligned_cols=204  Identities=14%  Similarity=0.164  Sum_probs=166.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhc-CCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVA-HHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.                ..+..+ +||||+++++++.+++..++|
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKR-LDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEc-CCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            37999999999999999999985 578899999764                144455 899999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCC------------------
Q 042690           87 YKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDY------------------  133 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~------------------  133 (266)
                      |||+++++|.+++...    ..+      .+..++..++.++|..+++|+     ||+++.+                  
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~  169 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN  169 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCC
Confidence            9999999999999754    333      345666777788888887777     8999844                  


Q ss_pred             -CEEEEeecCcceeeccccccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccC-----------
Q 042690          134 -FTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQ-----------  200 (266)
Q Consensus       134 -~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~-----------  200 (266)
                       ..++|+|||.+......     ....++..|+|||.+.+. .++.++||||||+++|+|++|.+++..           
T Consensus       170 ~~~~kl~Dfg~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~  244 (289)
T 1x8b_A          170 KVMFKIGDLGHVTRISSP-----QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGR  244 (289)
T ss_dssp             CCCEEECCCTTCEETTCS-----CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHTTC
T ss_pred             ceEEEEcccccccccCCc-----cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHcCC
Confidence             47899999999875422     223489999999988765 567899999999999999999986644           


Q ss_pred             --CCCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          201 --GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       201 --~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                        ..+......+.+++.+||+.||.+||++.++++
T Consensus       245 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          245 LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence              223455678899999999999999999999875

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=4.1e-36  Score=256.19  Aligned_cols=216  Identities=17%  Similarity=0.167  Sum_probs=171.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhh--cCCCceeeeeeEEEeCC----eEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHV--AHHKNLVCLLGYHIEQE----CRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~--~~h~~iv~~~~~~~~~~----~~~lv   86 (266)
                      .+|.+.+.||+|+||.||+|.+   +++.||+|.+.           ++++.  ++||||+++++++....    ..++|
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~---~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv  118 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKW---RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV  118 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEE---TTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEE
T ss_pred             ccEEEEeeecCCCCcEEEEEEE---cCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEE
Confidence            4799999999999999999997   57899999864           24444  78999999999998775    78999


Q ss_pred             EEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhh--------hcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           87 YKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCW--------RTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~--------~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      |||+++++|.+++.....     ..+..++..++.++|        ..+++|+     ||+++.++.++|+|||++....
T Consensus       119 ~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  198 (342)
T 1b6c_B          119 SDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  198 (342)
T ss_dssp             ECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             EeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceecc
Confidence            999999999999975321     234455666667777        5666665     9999999999999999998765


Q ss_pred             ccccc---ccccccCCCCcCCccccCCCC------CCcccchhhHHHHHHHHHhC----------CCcccCCCC------
Q 042690          149 INQTQ---TLTGMRETKGYLPPEWFRNMP------VTVKVDVYSFGVMLLEIISC----------RCVERQGSD------  203 (266)
Q Consensus       149 ~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~i~~~l~tg----------~~p~~~~~~------  203 (266)
                      .....   ......+|+.|+|||++.+..      ++.++||||||+++|+|+||          ..||.....      
T Consensus       199 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~  278 (342)
T 1b6c_B          199 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVE  278 (342)
T ss_dssp             TTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHH
T ss_pred             ccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHH
Confidence            33221   223457899999999887652      34689999999999999999          667754210      


Q ss_pred             ------------c---------cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          204 ------------P---------KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       204 ------------~---------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                                  +         .....+.+++.+||+.||.+||++.++++.|+.+.+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          279 EMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             HHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence                        1         11235778999999999999999999999999997753

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-35  Score=257.88  Aligned_cols=207  Identities=16%  Similarity=0.175  Sum_probs=166.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeC------------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQ------------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~------------   80 (266)
                      ..+|.+.+.||+|+||.||+|.+. .++..||+|++.          .+++.++||||+++++++...            
T Consensus         6 ~~~y~~~~~lG~G~fg~V~~a~~~-~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~   84 (383)
T 3eb0_A            6 SKKYSLGKTLGTGSFGIVCEVFDI-ESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPD   84 (383)
T ss_dssp             CTTEEEEEEEECC-CEEEEEEEET-TTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC------------
T ss_pred             cceEEEEEEEEeccCEEEEEEEEC-CCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCccccccccccc
Confidence            458999999999999999999976 678899999764          588899999999999998543            


Q ss_pred             --------------------------CeEEEEEEcCCCCCHHHHHhh----cCCCC------HHHHHHHHHHHhhhcCcc
Q 042690           81 --------------------------ECRLLVYKFMHNRSISSLLYE----CLRPT------WQQRMQDCIRDCWRTRAL  124 (266)
Q Consensus        81 --------------------------~~~~lv~e~~~~~~L~~~l~~----~~~~~------~~~~l~~~~~~~~~~~~~  124 (266)
                                                ...++||||+.+ +|.+.+..    ...+.      +..++..++.++|..+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~  163 (383)
T 3eb0_A           85 DHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGIC  163 (383)
T ss_dssp             -------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             ccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCc
Confidence                                      238899999985 88777763    23333      456677777888888888


Q ss_pred             cc-----ceeec-CCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCc
Q 042690          125 AC-----RILLH-DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCV  197 (266)
Q Consensus       125 h~-----nili~-~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p  197 (266)
                      |+     ||+++ .++.++|+|||+++.....  .......+|+.|+|||.+.+.. ++.++||||+||++|+|++|+.|
T Consensus       164 H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p  241 (383)
T 3eb0_A          164 HRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS--EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPL  241 (383)
T ss_dssp             CSCCCGGGEEEETTTTEEEECCCTTCEECCTT--SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cCccCHHHEEEcCCCCcEEEEECCCCcccCCC--CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCC
Confidence            77     89998 6899999999999876422  2334456799999999887654 89999999999999999999999


Q ss_pred             ccCCC--------------------------------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          198 ERQGS--------------------------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       198 ~~~~~--------------------------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      |....                                            +......+.+++.+||+.||.+|||+.|+++
T Consensus       242 f~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          242 FSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             SCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            97632                                            1123445789999999999999999999974

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.4e-36  Score=252.42  Aligned_cols=210  Identities=16%  Similarity=0.196  Sum_probs=168.3

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ..+.|.+.+.||+|+||.||+|.+. .++..+++|.+.              .+++.++||||+++++++..++..++||
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNK-ETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEET-TTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEc-CCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            3457999999999999999999986 568889998753              3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           88 KFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      ||+++++|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.++|+|||++...... ....
T Consensus        96 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~  174 (302)
T 2j7t_A           96 EFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-LQKR  174 (302)
T ss_dssp             ECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-HHC-
T ss_pred             EeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-cccc
Confidence            999999999998753 3333      44556666788888888776     899999999999999997643211 1122


Q ss_pred             ccccCCCCcCCcccc-----CCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHH
Q 042690          156 TGMRETKGYLPPEWF-----RNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVM  212 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~-----~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~  212 (266)
                      ....++..|+|||.+     .+..++.++||||||+++|+|++|..||....                  +......+.+
T Consensus       175 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  254 (302)
T 2j7t_A          175 DSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRD  254 (302)
T ss_dssp             ----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHH
T ss_pred             ccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHH
Confidence            335689999999987     46678899999999999999999999987521                  2234456889


Q ss_pred             HHHHhhhcCCCCCCCHHHHHH
Q 042690          213 IAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       213 l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ++.+||+.||.+||+++++++
T Consensus       255 li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          255 FLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             HHHHHSCSCTTTSCCHHHHTT
T ss_pred             HHHHHcccChhhCCCHHHHhc
Confidence            999999999999999998875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.7e-36  Score=250.73  Aligned_cols=207  Identities=14%  Similarity=0.175  Sum_probs=160.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .++|.+.+.||+|+||.||+|.+. .+++.||+|++..                .++.++||||+++++++.+++..++|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHV-PSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEec-CCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            468999999999999999999986 6788999997641                36678999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhh----cCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           87 YKFMHNRSISSLLYE----CLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~----~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      |||+++ +|.+++..    ...++      +..++..++.++|.. +++|+     ||+++.++.++|+|||++......
T Consensus        85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A           85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDD  163 (290)
T ss_dssp             EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC---------
T ss_pred             Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccccc
Confidence            999975 88887754    23333      445666667777776 77776     899999999999999999875422


Q ss_pred             cccccccccCCCCcCCcccc----CCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------Cccccc
Q 042690          151 QTQTLTGMRETKGYLPPEWF----RNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLE  208 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~  208 (266)
                        .......+|+.|+|||++    .+..++.++||||||+++|+|+||+.||....                  ......
T Consensus       164 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (290)
T 3fme_A          164 --VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPADKFSA  241 (290)
T ss_dssp             --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTTTSCH
T ss_pred             --ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccccCCH
Confidence              222334689999999985    45678999999999999999999999996411                  123556


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+.+++.+||+.||.+||++.++++
T Consensus       242 ~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          242 EFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHhhcChhhCcCHHHHHh
Confidence            7889999999999999999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.4e-35  Score=255.56  Aligned_cols=207  Identities=17%  Similarity=0.220  Sum_probs=170.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhc-CCCceeeeeeEEEeC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVA-HHKNLVCLLGYHIEQ   80 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~-~h~~iv~~~~~~~~~   80 (266)
                      .+|.+.+.||+|++|.||+|.+. .++..||+|++.                      .+++.+ +||||+++++++...
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  172 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHR-ATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS  172 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred             hhcccceEEecCCCEEEEEEEEC-CCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence            46999999999999999999985 568899999642                      255666 799999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      +..++||||+++++|.+++.....+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....
T Consensus       173 ~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~  252 (365)
T 2y7j_A          173 SFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEP  252 (365)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             CEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCC
Confidence            99999999999999999998765544      44556666677887777776     99999999999999999987642


Q ss_pred             ccccccccccCCCCcCCccccCC------CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------c
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN------MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------P  204 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~  204 (266)
                      .  .......||+.|+|||.+.+      ..++.++||||||+++|+|++|..||.....                   .
T Consensus       253 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  330 (365)
T 2y7j_A          253 G--EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWD  330 (365)
T ss_dssp             T--CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHS
T ss_pred             C--cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccc
Confidence            2  23345678999999998752      3578899999999999999999999865211                   1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .....+.+++.+||+.||.+||+++++++
T Consensus       331 ~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          331 DRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             SSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            23445889999999999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=249.37  Aligned_cols=208  Identities=16%  Similarity=0.218  Sum_probs=168.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++.....||+|+||.||+|.+. .++..||+|.+.              .+++.++||||+++++++...+..++||||
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  100 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDL-SNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ  100 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEET-TTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCCCCcEEEeecCcEEEEEEEEC-CCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence            34445558999999999999976 678889999653              477889999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC---CC------HHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeeccccccc
Q 042690           90 MHNRSISSLLYECLR---PT------WQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~---~~------~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      +++++|.+++.....   ..      +..++..++.++|..+++|+     ||+++. ++.++|+|||++...... ...
T Consensus       101 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~-~~~  179 (295)
T 2clq_A          101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGI-NPC  179 (295)
T ss_dssp             CSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----
T ss_pred             CCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCC-CCc
Confidence            999999999986422   12      34566777788888888877     899987 899999999999875422 122


Q ss_pred             cccccCCCCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccC------------------CCCccccchHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQ------------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~------------------~~~~~~~~~~~~l~  214 (266)
                      .....+++.|+|||.+.+..  ++.++||||||+++|+|++|+.||..                  ..+......+.+++
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  259 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFI  259 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHH
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHH
Confidence            23456899999999886543  78899999999999999999999864                  12334566788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+||+++++++
T Consensus       260 ~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          260 LKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             HHTTCSSTTTSCCHHHHHT
T ss_pred             HHHccCChhhCCCHHHHhc
Confidence            9999999999999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=7.1e-35  Score=259.20  Aligned_cols=215  Identities=14%  Similarity=0.156  Sum_probs=175.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCC-CceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHH-KNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h-~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||||.+.            ++++.++| +++..+..++......++||||+
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~-~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNI-QTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEET-TTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeeCCCEEEEEEEEC-CCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence            47999999999999999999975 678899999654            47778876 56666667777788899999999


Q ss_pred             CCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceee---cCCCEEEEeecCcceeecccccc--
Q 042690           91 HNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILL---HDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        91 ~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili---~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                       +++|.+++... ..+.      +..++..++.++|..+++|+     |||+   +.++.++|+|||+++........  
T Consensus        86 -g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~  164 (483)
T 3sv0_A           86 -GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQH  164 (483)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCB
T ss_pred             -CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccc
Confidence             88999999753 3333      44566667788888888877     8999   68899999999999876533221  


Q ss_pred             ----ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccc
Q 042690          154 ----TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKT  206 (266)
Q Consensus       154 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~  206 (266)
                          ......||..|+|||.+.+..++.++|||||||++|+|++|+.||.....                       ...
T Consensus       165 ~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  244 (483)
T 3sv0_A          165 IPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGY  244 (483)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTS
T ss_pred             cccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCC
Confidence                12246789999999999999999999999999999999999999976322                       233


Q ss_pred             cchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          207 LEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       207 ~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ...+.+++..||+.+|.+||++++|++.|+.+..
T Consensus       245 p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          245 PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence            5678889999999999999999999999988844

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=251.88  Aligned_cols=211  Identities=16%  Similarity=0.205  Sum_probs=165.4

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-CCCceeeeeeEEEe------C
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-HHKNLVCLLGYHIE------Q   80 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-~h~~iv~~~~~~~~------~   80 (266)
                      ...+.|.+.+.||+|+||.||+|.+. .+++.||+|.+.             .+++.+ +||||+++++++..      .
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~   99 (326)
T 2x7f_A           21 DPAGIFELVELVGNGTYGQVYKGRHV-KTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   99 (326)
T ss_dssp             CCTTTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCC
T ss_pred             CCCCcEEEEEEeccCCCEEEEEEEEC-CCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcccc
Confidence            34568999999999999999999986 578899999763             356676 79999999999987      4


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      +..++||||+++++|.+++....  .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++...
T Consensus       100 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  179 (326)
T 2x7f_A          100 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  179 (326)
T ss_dssp             CEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC--
T ss_pred             ceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceec
Confidence            67899999999999999998542  333      44566677788888888877     899999999999999999865


Q ss_pred             ccccccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------Ccc
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------DPK  205 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------~~~  205 (266)
                      ... ........++..|+|||++.     +..++.++||||||+++|+|++|..||....                 ...
T Consensus       180 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  258 (326)
T 2x7f_A          180 DRT-VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKK  258 (326)
T ss_dssp             ------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCSC
T ss_pred             CcC-ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCccc
Confidence            422 11223456899999999886     4568899999999999999999999986521                 223


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ....+.+++.+||+.||.+||+++++++
T Consensus       259 ~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          259 WSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             SCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            4567889999999999999999999876

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2.7e-35  Score=246.47  Aligned_cols=210  Identities=18%  Similarity=0.201  Sum_probs=173.1

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------------HHhhhcC-CCceeeeeeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------------KVVHVAH-HKNLVCLLGY   76 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------------~~l~~~~-h~~iv~~~~~   76 (266)
                      +-.++|.+.+.||+|++|.||+|.++ .+++.||+|.+.                       .+++.+. ||||++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~   92 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHK-PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDT   92 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEc-CcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeee
Confidence            44678999999999999999999986 678899999752                       2566775 9999999999


Q ss_pred             EEeCCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           77 HIEQECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        77 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                      +..++..++||||+++++|.+++.....++      +..++..++.++|.++++|+     ||+++.++.++|+|||++.
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  172 (298)
T 1phk_A           93 YETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSC  172 (298)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             eccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchh
Confidence            999999999999999999999998765544      44556666688888877776     8999999999999999998


Q ss_pred             eeccccccccccccCCCCcCCccccC------CCCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------
Q 042690          146 LLMINQTQTLTGMRETKGYLPPEWFR------NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------  202 (266)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------  202 (266)
                      .....  .......+++.|+|||.+.      ...++.++||||||+++|+|++|..||....                 
T Consensus       173 ~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~  250 (298)
T 1phk_A          173 QLDPG--EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS  250 (298)
T ss_dssp             ECCTT--CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT
T ss_pred             hcCCC--cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCc
Confidence            75422  2233456899999999874      4567889999999999999999999986521                 


Q ss_pred             --CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 --DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 --~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                        .......+.+++.+||+.||.+||+++++++
T Consensus       251 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          251 PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence              1234567889999999999999999999875

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=6.7e-36  Score=253.84  Aligned_cols=207  Identities=15%  Similarity=0.182  Sum_probs=166.5

Q ss_pred             ceeee-eccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhc-CCCceeeeeeEEEeCCeEEEE
Q 042690           25 HIYSL-KKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVA-HHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        25 ~~~~~-~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~-~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .|.+. +.||+|+||.||+|.+. .++..||+|.+.                .+++.+ .||||+++++++...+..++|
T Consensus        29 ~y~~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv  107 (327)
T 3lm5_A           29 FYILTSKELGRGKFAVVRQCISK-STGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILI  107 (327)
T ss_dssp             HEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             EEeeccceeCCCCCeEEEEEEEC-CCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEE
Confidence            46665 88999999999999986 678899999764                255566 469999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhc--CCC------CHHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeeccc
Q 042690           87 YKFMHNRSISSLLYEC--LRP------TWQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~--~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~  150 (266)
                      |||+.+++|.+++...  ..+      .+..++..++.++|..+++|+     ||+++.   ++.++|+|||++......
T Consensus       108 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          108 LEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             EECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             EEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            9999999999998643  233      345666677788888777776     899987   789999999999876422


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPV  211 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~  211 (266)
                        .......+|+.|+|||++.+..++.++||||||+++|+|++|+.||....                   .......+.
T Consensus       188 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  265 (327)
T 3lm5_A          188 --CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLAT  265 (327)
T ss_dssp             --------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHH
T ss_pred             --cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHH
Confidence              22334568999999999998899999999999999999999999986521                   123456688


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +++.+||+.||.+||+++++++.
T Consensus       266 ~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          266 DFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             HHHHHHcCCChhhCcCHHHHhCC
Confidence            99999999999999999999753

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=3e-35  Score=249.23  Aligned_cols=207  Identities=17%  Similarity=0.212  Sum_probs=167.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhh---cCCCceeeeeeEEE-----e
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHV---AHHKNLVCLLGYHI-----E   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~---~~h~~iv~~~~~~~-----~   79 (266)
                      .+|.+.+.||+|+||.||+|.+...++..||+|++.                .+++.   ++||||+++++++.     .
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           11 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   90 (326)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             hceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCC
Confidence            579999999999999999999854578889999763                23343   48999999999987     4


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           80 QECRLLVYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      ....++||||+. ++|.+++.....  +.      +..++..++.++|..+++|+     ||+++.++.++|+|||++..
T Consensus        91 ~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~  169 (326)
T 1blx_A           91 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI  169 (326)
T ss_dssp             EEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             CceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccccc
Confidence            557899999998 599999976432  33      44566667788888888877     89999999999999999986


Q ss_pred             eccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------
Q 042690          147 LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------  203 (266)
Q Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------  203 (266)
                      ...  ........++..|+|||.+.+..++.++||||||+++|+|++|+.||.....                       
T Consensus       170 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  247 (326)
T 1blx_A          170 YSF--QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV  247 (326)
T ss_dssp             CCG--GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTC
T ss_pred             ccC--CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCcccc
Confidence            542  2233346689999999999888899999999999999999999999865211                       


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                         +.....+.+++.+||+.||.+||++.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          248 ALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             SSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                               123445678999999999999999999984

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=5e-36  Score=251.30  Aligned_cols=212  Identities=16%  Similarity=0.197  Sum_probs=161.7

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      -...+|.+.+.||+|+||.||+|.+. .++..||+|.+.               ..++.++||||+++++++...+..++
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   90 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCA-PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL   90 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC-----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEEC-CCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence            34678999999999999999999965 567889999663               25567789999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhh--------cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           86 VYKFMHNRSISSLLYE--------CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~--------~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                      ||||+++++|.+++..        ...++      +..++..++.++|..+++|+     ||+++.++.++|+|||++..
T Consensus        91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  170 (303)
T 2vwi_A           91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAF  170 (303)
T ss_dssp             EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHH
T ss_pred             EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchhe
Confidence            9999999999999974        12233      44566677788888888877     89999999999999999876


Q ss_pred             eccccc----cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------
Q 042690          147 LMINQT----QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------  202 (266)
Q Consensus       147 ~~~~~~----~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------  202 (266)
                      ......    .......+++.|+|||.+.+ ..++.++||||||+++|+|++|+.||....                   
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  250 (303)
T 2vwi_A          171 LATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETG  250 (303)
T ss_dssp             CC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-
T ss_pred             eccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccc
Confidence            532211    11233568999999998765 457899999999999999999999986511                   


Q ss_pred             ------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                            .......+.+++.+||+.||.+||+++++++
T Consensus       251 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          251 VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             ----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence                  1123456788999999999999999999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=2.1e-35  Score=259.62  Aligned_cols=203  Identities=15%  Similarity=0.197  Sum_probs=166.4

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc------CCCceeeeeeEEEeCCeEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA------HHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~------~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +|.+.+.||+|+||.||+|.+. .++..||+|++.             .+++.+      .|+||+++++++...+..++
T Consensus        98 ry~~~~~LG~G~fg~V~~a~~~-~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~l  176 (429)
T 3kvw_A           98 RYEVLKVIGKGSFGQVVKAYDH-KVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICM  176 (429)
T ss_dssp             TEEEEEEEEESSSEEEEEEEET-TTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEE
T ss_pred             cEEEEEEcccCccEEEEEEEEC-CCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEE
Confidence            5999999999999999999976 678899999874             133433      67899999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCC--CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE--EEEeecCcceeeccc
Q 042690           86 VYKFMHNRSISSLLYECLR--PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT--VETSDLGLAKLLMIN  150 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~--~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~--~~l~Dfg~a~~~~~~  150 (266)
                      ||||+. ++|.+++.....  ++      +..++..++.++|..+++|+     |||++.++.  +||+|||++....  
T Consensus       177 v~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~--  253 (429)
T 3kvw_A          177 TFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH--  253 (429)
T ss_dssp             EECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT--
T ss_pred             EEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecC--
Confidence            999996 599999976532  33      45566677788887777776     999999987  9999999997643  


Q ss_pred             cccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc--------------------------
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------------------------  204 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------------------------  204 (266)
                        .......+|+.|+|||++.+..++.++|||||||++|+|+||..||......                          
T Consensus       254 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~  331 (429)
T 3kvw_A          254 --QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKN  331 (429)
T ss_dssp             --CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHH
T ss_pred             --CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhh
Confidence              2233457899999999999888999999999999999999999998652210                          


Q ss_pred             ------------------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ------------------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ------------------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                      .....+.+++.+||+.||.+|||++|+++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~  408 (429)
T 3kvw_A          332 FVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALR  408 (429)
T ss_dssp             HBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhC
Confidence                                                            01345679999999999999999999986

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=2.8e-35  Score=253.52  Aligned_cols=208  Identities=19%  Similarity=0.229  Sum_probs=169.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC-----CeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~-----~~~   83 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|++.               ++++.++||||+++++++...     ...
T Consensus        27 ~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           27 PRYTNLSYIGEGAYGMVCSAYDN-LNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             ccEEEEEEeecCCCeEEEEEEEC-CCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            47999999999999999999975 678889999763               377889999999999998765     368


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ++||||+.+ +|.+++....-     ..+..++..++.++|..+++|+     ||+++.++.++|+|||++.........
T Consensus       106 ~iv~e~~~~-~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~  184 (364)
T 3qyz_A          106 YIVQDLMET-DLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH  184 (364)
T ss_dssp             EEEEECCSE-EHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCB
T ss_pred             EEEEcccCc-CHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCc
Confidence            999999975 99999875321     2345667777788888888877     999999999999999999876432222


Q ss_pred             --ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          154 --TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                        ......||+.|+|||++.+ ..++.++||||||+++|+|++|+.||.....                           
T Consensus       185 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  264 (364)
T 3qyz_A          185 TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKA  264 (364)
T ss_dssp             CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHH
T ss_pred             cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhH
Confidence              1234578999999997654 4589999999999999999999999965321                           


Q ss_pred             -------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                         +.....+.+++.+||+.||.+||+++++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          265 RNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             HHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                               223456789999999999999999999985

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=5.7e-36  Score=258.52  Aligned_cols=205  Identities=8%  Similarity=-0.067  Sum_probs=155.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH-----------------Hhhhc--CCCceeeee-------eE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVA--HHKNLVCLL-------GY   76 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~-----------------~l~~~--~h~~iv~~~-------~~   76 (266)
                      ..+|.+.+.||+|+||.||+|.+. .+++.||+|++..                 +++.+  +||||++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDV-ERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEEC-CCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehh
Confidence            345999999999999999999986 6788999997651                 13333  699987754       55


Q ss_pred             EEeC-----------------CeEEEEEEcCCCCCHHHHHhhcCC---C----------CHHHHHHHHHHHhhhcCcccc
Q 042690           77 HIEQ-----------------ECRLLVYKFMHNRSISSLLYECLR---P----------TWQQRMQDCIRDCWRTRALAC  126 (266)
Q Consensus        77 ~~~~-----------------~~~~lv~e~~~~~~L~~~l~~~~~---~----------~~~~~l~~~~~~~~~~~~~h~  126 (266)
                      +..+                 ...++||||++ ++|.+++.....   .          .+..++..++.++|.++++|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHr  218 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHG  218 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEET
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccC
Confidence            5443                 23799999998 799999985311   1          222677777888888888887


Q ss_pred             -----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCccc
Q 042690          127 -----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVER  199 (266)
Q Consensus       127 -----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~  199 (266)
                           |||++.++.+||+|||+++....    ......+++.|+|||++.+  ..++.++|||||||++|+|+||+.||.
T Consensus       219 Dikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~  294 (371)
T 3q60_A          219 HFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFG  294 (371)
T ss_dssp             TCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred             cCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCC
Confidence                 99999999999999999986532    1113456799999999987  678999999999999999999999997


Q ss_pred             CCCC------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          200 QGSD------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       200 ~~~~------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ...+                        +.....+.+++.+||+.||.+||++.++++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          295 LVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             BCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             CcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            6411                        234567889999999999999999999874

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.9e-35  Score=249.22  Aligned_cols=206  Identities=15%  Similarity=0.183  Sum_probs=167.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.                      ++++.++||||+++++++..+.
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFER-KTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hceeEeeEEecCCCEEEEEEEEc-CCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            37999999999999999999976 678889999642                      3788899999999999987655


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCE---EEEeecCcceee
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFT---VETSDLGLAKLL  147 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~---~~l~Dfg~a~~~  147 (266)
                       .++||||+++++|.+++.....+.      +..++..++.++|.++++|+     ||+++.++.   ++|+|||++...
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  167 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  167 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred             -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence             899999999999999998765554      34566667788888888776     899987664   999999999875


Q ss_pred             ccccccccccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------------c
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------------P  204 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------------~  204 (266)
                      ...  .......+++.|+|||++.   +..++.++||||||+++|+|++|..||.....                    .
T Consensus       168 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (322)
T 2ycf_A          168 GET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWA  245 (322)
T ss_dssp             CCC--HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHT
T ss_pred             ccc--cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhh
Confidence            422  1222345899999999863   55688999999999999999999999965321                    1


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .....+.+++.+||+.||.+||+++++++
T Consensus       246 ~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          246 EVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             TSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            23556788999999999999999999874

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.8e-35  Score=259.49  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=164.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeC------CeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQ------ECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~------~~~~lv~e   88 (266)
                      .|.+.+.||+|+||.||+|.+. .++..||||++.          ++++.++||||+++++++...      ..+++|||
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  133 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLC-DSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD  133 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEEC-CCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehh
Confidence            6999999999999999999986 568899999753          588999999999999998542      13679999


Q ss_pred             cCCCCCHHHHHhh----cCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeeccccc
Q 042690           89 FMHNRSISSLLYE----CLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~----~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+.+ +|.+.+..    ...+.      +..++..++.++|.++++|+     |||++.+ +.+||+|||+++.....  
T Consensus       134 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~--  210 (420)
T 1j1b_A          134 YVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG--  210 (420)
T ss_dssp             CCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT--
T ss_pred             cccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccC--
Confidence            9986 77766653    23333      45567777788888888887     9999955 68899999999875422  


Q ss_pred             cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------------  203 (266)
                      .......+|+.|+|||++.+. .++.++|||||||++|||++|+.||.....                            
T Consensus       211 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~  290 (420)
T 1j1b_A          211 EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE  290 (420)
T ss_dssp             CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCC
T ss_pred             CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhh
Confidence            223346789999999988764 689999999999999999999999975221                            


Q ss_pred             ----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                      +.....+.+++.+||+.||.+||++.++++
T Consensus       291 ~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          291 FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence                            123457889999999999999999999985

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=9.7e-35  Score=245.97  Aligned_cols=207  Identities=17%  Similarity=0.278  Sum_probs=172.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcC--CCceeeeeeEEEeC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAH--HKNLVCLLGYHIEQ   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~--h~~iv~~~~~~~~~   80 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..||+|.+.                    .+++.++  ||||+++++++..+
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           42 ESQYQVGPLLGSGGFGSVYSGIRV-SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEEET-TTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             cCceEEEEEEeeCCCeEEEEEEEC-CCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            457999999999999999999976 678899999753                    3666775  59999999999999


Q ss_pred             CeEEEEEEcCCC-CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec-CCCEEEEeecCcceee
Q 042690           81 ECRLLVYKFMHN-RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH-DYFTVETSDLGLAKLL  147 (266)
Q Consensus        81 ~~~~lv~e~~~~-~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~-~~~~~~l~Dfg~a~~~  147 (266)
                      +..++|||++.+ ++|.+++.....+.      +..++..++.++|..+++|+     ||+++ +++.++|+|||++...
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~  200 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALL  200 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred             CcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccccc
Confidence            999999999986 89999998766554      44566667788887777776     89999 7899999999999875


Q ss_pred             ccccccccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccC---------CCCccccchHHHHHHHh
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQ---------GSDPKTLEKPVMIAIQF  217 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~---------~~~~~~~~~~~~l~~~c  217 (266)
                      ..   .......+|+.|+|||++.+..+ +.++||||||+++|+|++|+.||..         .........+.+++.+|
T Consensus       201 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~~  277 (320)
T 3a99_A          201 KD---TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWC  277 (320)
T ss_dssp             CS---SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHH
T ss_pred             cc---ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhhcccccccccCCHHHHHHHHHH
Confidence            42   22234568999999998876665 6789999999999999999999865         22345567889999999


Q ss_pred             hhcCCCCCCCHHHHHH
Q 042690          218 VKEKPPLRPSLRIVAL  233 (266)
Q Consensus       218 l~~~p~~Rps~~~il~  233 (266)
                      |+.||.+||+++++++
T Consensus       278 l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          278 LALRPSDRPTFEEIQN  293 (320)
T ss_dssp             TCSSGGGSCCHHHHHT
T ss_pred             ccCChhhCcCHHHHhc
Confidence            9999999999999976

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=244.41  Aligned_cols=210  Identities=19%  Similarity=0.168  Sum_probs=166.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------------HHhhhcCCCceeeeeeEEE--eCCe
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------------KVVHVAHHKNLVCLLGYHI--EQEC   82 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------------~~l~~~~h~~iv~~~~~~~--~~~~   82 (266)
                      .++|.+.+.||+|+||.||++.+. .++..+|+|.+.                  .+++.++||||+++++++.  ....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDS-ETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBT-TTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             ccceeEeeEEecCCCeEEEEEEEC-CCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            357999999999999999999975 677889998763                  3677889999999999985  3457


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           83 RLLVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      .++||||+.++ |.+++....  .+.      +..++..++.++|..+++|+     ||+++.++.++|+|||++.....
T Consensus        83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~  161 (305)
T 2wtk_C           83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHP  161 (305)
T ss_dssp             EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCc
Confidence            89999999875 777776532  233      44566677788888888877     89999999999999999987542


Q ss_pred             cc-ccccccccCCCCcCCccccCCCC--CCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHH
Q 042690          150 NQ-TQTLTGMRETKGYLPPEWFRNMP--VTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPV  211 (266)
Q Consensus       150 ~~-~~~~~~~~~~~~y~aPE~~~~~~--~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~  211 (266)
                      .. ........++..|+|||++.+..  .+.++||||||+++|+|++|+.||...               .+......+.
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~l~  241 (305)
T 2wtk_C          162 FAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGPPLS  241 (305)
T ss_dssp             TCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCHHHH
T ss_pred             cccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCHHHH
Confidence            21 22223456899999999887644  377999999999999999999999752               2334556788


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +++.+||+.||.+||+++++++.
T Consensus       242 ~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          242 DLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHccCChhhCCCHHHHhcC
Confidence            99999999999999999999864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.2e-35  Score=251.59  Aligned_cols=216  Identities=16%  Similarity=0.149  Sum_probs=154.7

Q ss_pred             Cceeeee-ccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEe----CCeEEEEEE
Q 042690           24 SHIYSLK-KPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIE----QECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~-~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~----~~~~~lv~e   88 (266)
                      ++|.+.+ .||+|+||.||+|.++ .+++.||+|++.          ..++.++||||+++++++..    ....++|||
T Consensus        28 ~~y~i~~~~lG~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e  106 (336)
T 3fhr_A           28 DDYQLSKQVLGLGVNGKVLECFHR-RTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIME  106 (336)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeEecceeeeeCCCeEEEEEEEC-CCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEEe
Confidence            4788865 5999999999999986 678899999864          25667789999999999876    445899999


Q ss_pred             cCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeeccccc
Q 042690           89 FMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+++++|.+++....  .++      +..++..++.++|..+++|+     ||+++.   ++.++|+|||++.....   
T Consensus       107 ~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~---  183 (336)
T 3fhr_A          107 CMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ---  183 (336)
T ss_dssp             CCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc---
Confidence            999999999998653  233      44566667788888887776     899986   45699999999986542   


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccccch
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTLEK  209 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~~~  209 (266)
                      .......+|+.|+|||.+.+..++.++||||||+++|+|++|..||.....                       ......
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (336)
T 3fhr_A          184 NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSED  263 (336)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHH
T ss_pred             cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHH
Confidence            222345679999999999888899999999999999999999999855211                       234567


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHH--HHHHHHhCCC
Q 042690          210 PVMIAIQFVKEKPPLRPSLRIVAL--MLQSILEVPS  243 (266)
Q Consensus       210 ~~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~~~~  243 (266)
                      +.+++.+||+.||.+||+++++++  .+......+.
T Consensus       264 ~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~  299 (336)
T 3fhr_A          264 AKQLIRLLLKTDPTERLTITQFMNHPWINQSMVVPQ  299 (336)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGGGSCC
T ss_pred             HHHHHHHHCCCChhHCcCHHHHhcCccccccccCCC
Confidence            889999999999999999999996  4554444343

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=2.8e-35  Score=256.20  Aligned_cols=205  Identities=17%  Similarity=0.222  Sum_probs=163.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeCCe------EEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQEC------RLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~~~------~~lv~   87 (266)
                      .+|.+.+.||+|+||.||+|.+.  ....+|+|++.          ++++.++||||+++++++...+.      .++||
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~--~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~  117 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLV--ESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVL  117 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEET--TTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEEC--CCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEe
Confidence            36999999999999999999985  34448887653          58899999999999999965443      78999


Q ss_pred             EcCCCCCHHHHHhh----cCCC------CHHHHHHHHHHHhhhcCcccc-----ceeec-CCCEEEEeecCcceeecccc
Q 042690           88 KFMHNRSISSLLYE----CLRP------TWQQRMQDCIRDCWRTRALAC-----RILLH-DYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~----~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~-~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ||+.+ ++.+.+..    ...+      .+..++..++.++|..+++|+     ||+++ .++.+||+|||+++..... 
T Consensus       118 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~-  195 (394)
T 4e7w_A          118 EYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG-  195 (394)
T ss_dssp             ECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT-
T ss_pred             eccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC-
Confidence            99987 55444432    2333      345577777888888888887     99999 7999999999999876422 


Q ss_pred             ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------  203 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------  203 (266)
                       .......+|+.|+|||++.+. .++.++|||||||++|+|++|+.||.....                           
T Consensus       196 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~  274 (394)
T 4e7w_A          196 -EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYM  274 (394)
T ss_dssp             -CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGS
T ss_pred             -CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh
Confidence             233356789999999988765 489999999999999999999999976321                           


Q ss_pred             -----------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       +.....+.+++.+||+.||.+||++.++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          275 EHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             SSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence                             124457889999999999999999999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.4e-35  Score=255.66  Aligned_cols=205  Identities=17%  Similarity=0.216  Sum_probs=151.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC------
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ------   80 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~------   80 (266)
                      .++|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++...      
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDT-KTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEET-TTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEEC-CCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            368999999999999999999975 678899999863                377889999999999998654      


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ...++|||++ +++|.+++.. ..++      +..++..++.++|..+++|+     ||+++.++.+||+|||+++....
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~  184 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKC-QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTAD  184 (367)
T ss_dssp             CCCEEEEECC-CEECC------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC---------
T ss_pred             CeEEEEeccc-CCCHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccccc
Confidence            4579999999 6799998865 3333      45667777788888888887     99999999999999999986432


Q ss_pred             ccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------------
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------------  203 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------------  203 (266)
                          ......+|..|+|||++.+ ..++.++|||||||++|+|++|+.||.+...                         
T Consensus       185 ----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~  260 (367)
T 2fst_X          185 ----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSE  260 (367)
T ss_dssp             ----------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCH
T ss_pred             ----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhH
Confidence                2234568999999998876 6789999999999999999999999975221                         


Q ss_pred             ---------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ---------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ---------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                           +.....+.+++.+||+.||.+|||++++++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          261 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence                                 1123457889999999999999999999853

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=3.6e-35  Score=249.10  Aligned_cols=208  Identities=15%  Similarity=0.171  Sum_probs=149.5

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------HhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..++|.+.+.||+|+||.||+|.+. .+++.||+|++..                +++.++||||+++++++..++..++
T Consensus        20 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           20 TAEDLKDLGEIGRGAYGSVNKMVHK-PSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CSCSEEC-CEEEECSSEEEEEEEET-TTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             CHHHhhehheeccCCCEEEEEEEEc-CCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            4578999999999999999999985 5788999997641                4566789999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhh-----cCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeec
Q 042690           86 VYKFMHNRSISSLLYE-----CLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~-----~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      ||||+.+ +|.+++..     ...+.      +..++..++.++|.. +++|+     ||+++.++.+||+|||++....
T Consensus        99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A           99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence            9999986 88888763     23333      344555556677766 66666     9999999999999999998754


Q ss_pred             cccccccccccCCCCcCCcccc----CCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------C
Q 042690          149 INQTQTLTGMRETKGYLPPEWF----RNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------D  203 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~  203 (266)
                      ..  .......++..|+|||++    .+..++.++||||||+++|+|++|+.||....                     .
T Consensus       178 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (327)
T 3aln_A          178 DS--IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEE  255 (327)
T ss_dssp             ------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSS
T ss_pred             cc--cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCccc
Confidence            22  222234689999999988    45568899999999999999999999986511                     0


Q ss_pred             ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ......+.+++.+||+.||.+||+++++++
T Consensus       256 ~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          256 REFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             CCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            124567889999999999999999999874

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=5.4e-35  Score=252.46  Aligned_cols=205  Identities=16%  Similarity=0.236  Sum_probs=165.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeE----
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECR----   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~----   83 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++...+..    
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDK-RSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             ccEEEEeEEecCCCeEEEEEEEC-CCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            57999999999999999999976 678899999764                367889999999999999876654    


Q ss_pred             --EEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 --LLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 --~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                        ++||||+. ++|.+++...-.    ..+..++..++.++|..+++|+     ||+++.++.++|+|||++.....   
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~---  196 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---  196 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--------
T ss_pred             eEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccccccc---
Confidence              99999997 489888753311    3345667777788888888887     99999999999999999986532   


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                       ......+|+.|+|||++.+ ..++.++||||||+++|+|++|+.||....                             
T Consensus       197 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  275 (371)
T 4exu_A          197 -EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  275 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHH
T ss_pred             -CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhh
Confidence             2234567999999998876 678999999999999999999999997522                             


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                       .+.....+.+++.+||+.||.+||+++++++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          276 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             HHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence                             01235677899999999999999999999853

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.3e-35  Score=253.29  Aligned_cols=216  Identities=17%  Similarity=0.204  Sum_probs=158.3

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCe-----
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQEC-----   82 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~-----   82 (266)
                      ..+++|.+.+.||+|+||.||+|.+. .++..||+|++.             +.++.++||||+++++++...+.     
T Consensus        20 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~   98 (360)
T 3e3p_A           20 KEMDRFQVERMAGQGTFGTVQLGKEK-STGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRD   98 (360)
T ss_dssp             HHHTTEEEC----------CEEEEET-TTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTC
T ss_pred             hhccceEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccc
Confidence            45678999999999999999999986 678899999764             24567799999999999976433     


Q ss_pred             --EEEEEEcCCCCCHHHHHh----hcCCCC------HHHHHHHHHHHhh--hcCcccc-----ceeecC-CCEEEEeecC
Q 042690           83 --RLLVYKFMHNRSISSLLY----ECLRPT------WQQRMQDCIRDCW--RTRALAC-----RILLHD-YFTVETSDLG  142 (266)
Q Consensus        83 --~~lv~e~~~~~~L~~~l~----~~~~~~------~~~~l~~~~~~~~--~~~~~h~-----nili~~-~~~~~l~Dfg  142 (266)
                        .++||||+.+ +|.+.+.    ....+.      +..++..++.++|  ..+++|+     ||+++. ++.++|+|||
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg  177 (360)
T 3e3p_A           99 IYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFG  177 (360)
T ss_dssp             EEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCT
T ss_pred             eeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCC
Confidence              7899999987 6655544    222332      4456666678888  7777776     999997 8999999999


Q ss_pred             cceeeccccccccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCCc-----------------
Q 042690          143 LAKLLMINQTQTLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSDP-----------------  204 (266)
Q Consensus       143 ~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~~-----------------  204 (266)
                      ++......  .......+|+.|+|||++.+.. ++.++||||||+++|+|++|+.||......                 
T Consensus       178 ~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  255 (360)
T 3e3p_A          178 SAKKLSPS--EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREV  255 (360)
T ss_dssp             TCBCCCTT--SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             CceecCCC--CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHH
Confidence            99876422  2333456899999999886544 899999999999999999999999752210                 


Q ss_pred             ------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHHh
Q 042690          205 ------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSILE  240 (266)
Q Consensus       205 ------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~~  240 (266)
                                                    .....+.+++.+||+.||.+||++.++++.  ++....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  323 (360)
T 3e3p_A          256 LRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD  323 (360)
T ss_dssp             HHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred             HHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence                                          023567899999999999999999999853  554433

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=3.8e-35  Score=250.89  Aligned_cols=205  Identities=17%  Similarity=0.229  Sum_probs=170.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------------------HHhhhcCCCcee
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------------------KVVHVAHHKNLV   71 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------------------~~l~~~~h~~iv   71 (266)
                      .++|.+.+.||+|+||.||+|.+   ++..||+|.+.                               .+++.++||||+
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~  106 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK---DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCL  106 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE---TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc---CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcc
Confidence            46899999999999999999997   78899998642                               367788999999


Q ss_pred             eeeeEEEeCCeEEEEEEcCCCCCHHHH------Hhh--cCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeec
Q 042690           72 CLLGYHIEQECRLLVYKFMHNRSISSL------LYE--CLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLH  131 (266)
Q Consensus        72 ~~~~~~~~~~~~~lv~e~~~~~~L~~~------l~~--~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~  131 (266)
                      ++++++.+.+..++||||+++++|.++      +..  ...++      +..++..++.++|. .+++|+     ||+++
T Consensus       107 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~  186 (348)
T 2pml_X          107 TCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMD  186 (348)
T ss_dssp             CCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEEC
T ss_pred             eEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEc
Confidence            999999999999999999999999998      554  23333      44556666788887 777777     89999


Q ss_pred             CCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCC-CCCc-ccchhhHHHHHHHHHhCCCcccCCCC------
Q 042690          132 DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM-PVTV-KVDVYSFGVMLLEIISCRCVERQGSD------  203 (266)
Q Consensus       132 ~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~-~~Di~slG~i~~~l~tg~~p~~~~~~------  203 (266)
                      .++.++|+|||++......   ......++..|+|||.+.+. .++. ++||||||+++|+|++|+.||.....      
T Consensus       187 ~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  263 (348)
T 2pml_X          187 KNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFN  263 (348)
T ss_dssp             TTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHH
T ss_pred             CCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHH
Confidence            9999999999999875422   33446689999999998876 5666 99999999999999999999965322      


Q ss_pred             -----------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 -----------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 -----------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                   ......+.+++.+||+.||.+||+++++++
T Consensus       264 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          264 NIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             HHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                                         345567889999999999999999999876

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=7.7e-35  Score=243.81  Aligned_cols=209  Identities=18%  Similarity=0.248  Sum_probs=160.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEe-----------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIE-----------   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~-----------   79 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.             .+++.++||||+++++++..           
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNA-LDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             ccchhhheeccCCcEEEEEEEEc-CCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            47899999999999999999975 578899999764             36778899999999998865           


Q ss_pred             --CCeEEEEEEcCCCCCHHHHHhhcCC-C------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcce
Q 042690           80 --QECRLLVYKFMHNRSISSLLYECLR-P------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAK  145 (266)
Q Consensus        80 --~~~~~lv~e~~~~~~L~~~l~~~~~-~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~  145 (266)
                        .+..++||||+++++|.+++..... +      .+..++..++.++|..+++|+     ||+++.++.++|+|||++.
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  164 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAK  164 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCS
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchh
Confidence              3568999999999999999975432 2      345667777788888888887     8999999999999999997


Q ss_pred             eecccc-------------ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccC-----------
Q 042690          146 LLMINQ-------------TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQ-----------  200 (266)
Q Consensus       146 ~~~~~~-------------~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~-----------  200 (266)
                      ......             ........++..|+|||.+.+. .++.++||||||+++|+|+++..+...           
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~~~  244 (303)
T 1zy4_A          165 NVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSV  244 (303)
T ss_dssp             CTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHST
T ss_pred             hcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhcccc
Confidence            653211             1122345689999999988754 688999999999999999983221100           


Q ss_pred             ------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          201 ------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       201 ------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                            .........+.+++.+||+.||.+||+++++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          245 SIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             TCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence                  112233445789999999999999999999986

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=6e-35  Score=248.20  Aligned_cols=205  Identities=16%  Similarity=0.154  Sum_probs=167.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCC------ceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHK------NLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~------~iv~~~~~~~~~~~~~   84 (266)
                      ++|.+.+.||+|+||.||+|.+...++..||+|++.             .+++.++|+      +++++++++...+..+
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~   93 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHIC   93 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEE
Confidence            489999999999999999999855678899999764             245555544      5999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC-------------------
Q 042690           85 LVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD-------------------  132 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~-------------------  132 (266)
                      +||||+ +++|.+++....  .++      +..++..++.++|.++++|+     ||+++.                   
T Consensus        94 lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~  172 (339)
T 1z57_A           94 IVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLI  172 (339)
T ss_dssp             EEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEES
T ss_pred             EEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCcccccccccc
Confidence            999999 789999998654  233      44666777788888888877     899987                   


Q ss_pred             CCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc--------
Q 042690          133 YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------  204 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------  204 (266)
                      ++.++|+|||++.....    ......+|+.|+|||++.+..++.++||||||+++|+|++|..||......        
T Consensus       173 ~~~~kl~Dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  248 (339)
T 1z57_A          173 NPDIKVVDFGSATYDDE----HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMER  248 (339)
T ss_dssp             CCCEEECCCSSCEETTS----CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHH
T ss_pred             CCCceEeeCcccccCcc----ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence            66799999999986432    223456899999999999888999999999999999999999999752211        


Q ss_pred             ---------------------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ---------------------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ---------------------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                         .....+.+++.+||+.||.+|||++++++
T Consensus       249 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          249 ILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             HHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence                                                               11245679999999999999999999875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.6e-35  Score=255.12  Aligned_cols=208  Identities=16%  Similarity=0.214  Sum_probs=153.8

Q ss_pred             eee-eeccCCCcceEEEEEEEcC-CCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEe--CCeEEEEEEc
Q 042690           26 IYS-LKKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIE--QECRLLVYKF   89 (266)
Q Consensus        26 ~~~-~~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~--~~~~~lv~e~   89 (266)
                      |.+ .++||+|+||.||+|.++. .++..||+|++.            .+++.++||||+++++++..  ....++||||
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~  101 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDY  101 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEEC
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeC
Confidence            444 4579999999999999753 367889999764            48889999999999999965  5689999999


Q ss_pred             CCCCCHHHHHhhcC---------C------CCHHHHHHHHHHHhhhcCcccc-----ceee----cCCCEEEEeecCcce
Q 042690           90 MHNRSISSLLYECL---------R------PTWQQRMQDCIRDCWRTRALAC-----RILL----HDYFTVETSDLGLAK  145 (266)
Q Consensus        90 ~~~~~L~~~l~~~~---------~------~~~~~~l~~~~~~~~~~~~~h~-----nili----~~~~~~~l~Dfg~a~  145 (266)
                      +.+ +|.+++....         .      ..+..++..++.++|..+++|+     ||++    +.++.++|+|||++.
T Consensus       102 ~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~  180 (405)
T 3rgf_A          102 AEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  180 (405)
T ss_dssp             CSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC
T ss_pred             CCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCce
Confidence            975 8888876321         1      2345677778888998888887     8999    677899999999998


Q ss_pred             eeccccc--cccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCCc------------------
Q 042690          146 LLMINQT--QTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSDP------------------  204 (266)
Q Consensus       146 ~~~~~~~--~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~------------------  204 (266)
                      .......  .......||+.|+|||++.+. .++.++|||||||++|+|++|+.||......                  
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~  260 (405)
T 3rgf_A          181 LFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNV  260 (405)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHH
T ss_pred             ecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHh
Confidence            7643211  223346789999999988774 4899999999999999999999999642210                  


Q ss_pred             --------------------------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          205 --------------------------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       205 --------------------------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                                  .....+.+++.+||+.||.+|||++++++.
T Consensus       261 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~h  334 (405)
T 3rgf_A          261 MGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQD  334 (405)
T ss_dssp             HCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence                                                        014567789999999999999999999863

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=7.9e-35  Score=245.68  Aligned_cols=208  Identities=17%  Similarity=0.234  Sum_probs=160.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEE-----------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHI-----------   78 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~-----------   78 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|++.              ++++.++||||+++++++.           
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDN-DCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEET-TTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CceeEEEEeccCCCeEEEEEEEC-CCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            58999999999999999999986 568899999653              3778899999999999873           


Q ss_pred             ---eCCeEEEEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeec-CCCEEEEeecCcc
Q 042690           79 ---EQECRLLVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLH-DYFTVETSDLGLA  144 (266)
Q Consensus        79 ---~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~-~~~~~~l~Dfg~a  144 (266)
                         .....++||||+. ++|.+++....-     ..+..++..++.++|..+++|+     ||+++ .++.++|+|||++
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~  168 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA  168 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccc
Confidence               3467899999998 599999975321     2345566777788888888887     89997 5679999999999


Q ss_pred             eeeccccc--cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC------------------
Q 042690          145 KLLMINQT--QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD------------------  203 (266)
Q Consensus       145 ~~~~~~~~--~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~------------------  203 (266)
                      ........  .......++..|+|||.+.+ ..++.++||||||+++|+|++|+.||.....                  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  248 (320)
T 2i6l_A          169 RIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEED  248 (320)
T ss_dssp             BCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHH
T ss_pred             cccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhh
Confidence            87542211  12233557889999997754 6789999999999999999999999975221                  


Q ss_pred             ---------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                 +.....+.+++.+||+.||.+||+++++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          249 RQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             HHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             hhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence                                       124567889999999999999999999986

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=6.4e-35  Score=249.93  Aligned_cols=207  Identities=14%  Similarity=0.226  Sum_probs=166.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeC-----CeE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQ-----ECR   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~-----~~~   83 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.               .+++.++||||+++++++...     ...
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           11 SDFQLKSLLGEGAYGVVCSATHK-PTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             cceEEeeEEcCCCCeEEEEEEEC-CCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            58999999999999999999985 578899999763               377889999999999987654     578


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||||+. ++|.+++... .+      .+..++..++.++|..+++|+     ||+++.++.++|+|||++........
T Consensus        90 ~lv~e~~~-~~L~~~~~~~-~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  167 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQ-MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAA  167 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred             EEEEeccC-ccHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccc
Confidence            99999997 4999998753 33      345667777788888888877     89999999999999999987542211


Q ss_pred             c---------ccccccCCCCcCCccccC-CCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------
Q 042690          153 Q---------TLTGMRETKGYLPPEWFR-NMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------  203 (266)
Q Consensus       153 ~---------~~~~~~~~~~y~aPE~~~-~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------  203 (266)
                      .         ......||+.|+|||++. +..++.++||||||+++|+|++|+.||.....                   
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  247 (353)
T 2b9h_A          168 DNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDND  247 (353)
T ss_dssp             ------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTT
T ss_pred             cccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhcc
Confidence            1         122346899999999765 46789999999999999999999999865220                   


Q ss_pred             ----------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ----------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ----------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                  +.....+.+++.+||+.||.+||+++++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          248 LRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                                        134456778999999999999999999986

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=4e-35  Score=254.72  Aligned_cols=204  Identities=16%  Similarity=0.146  Sum_probs=162.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC--------CCceeeeeeEEE----
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH--------HKNLVCLLGYHI----   78 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~--------h~~iv~~~~~~~----   78 (266)
                      ++|.+.+.||+|+||+||+|.+. .+++.||+|++.             .+++.++        |+||+++++++.    
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDI-QGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CeEEEEEEeeecCCeeEEEEEec-CCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            57999999999999999999975 678899999764             2455553        888999999987    


Q ss_pred             eCCeEEEEEEcCCCCCHHHHHhhc--CCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCC----------
Q 042690           79 EQECRLLVYKFMHNRSISSLLYEC--LRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYF----------  134 (266)
Q Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~--~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~----------  134 (266)
                      .....++||||+ +++|.+++...  ..+.      +..++..++.++|.+ +++|+     |||++.++          
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~  194 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEA  194 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHH
T ss_pred             CCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhh
Confidence            445789999999 45777766543  2233      445666777888877 77777     99999776          


Q ss_pred             ---------------------------------------EEEEeecCcceeeccccccccccccCCCCcCCccccCCCCC
Q 042690          135 ---------------------------------------TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPV  175 (266)
Q Consensus       135 ---------------------------------------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (266)
                                                             .++|+|||++.....    ......+|+.|+|||++.+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~  270 (397)
T 1wak_A          195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK----HFTEDIQTRQYRSLEVLIGSGY  270 (397)
T ss_dssp             C---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB----CSCSCCSCGGGCCHHHHHTSCC
T ss_pred             HHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc----cCccCCCCCcccCChhhcCCCC
Confidence                                                   799999999987532    2334568999999999998889


Q ss_pred             CcccchhhHHHHHHHHHhCCCcccCCCCc---------------------------------------------------
Q 042690          176 TVKVDVYSFGVMLLEIISCRCVERQGSDP---------------------------------------------------  204 (266)
Q Consensus       176 ~~~~Di~slG~i~~~l~tg~~p~~~~~~~---------------------------------------------------  204 (266)
                      +.++|||||||++|+|+||+.||......                                                   
T Consensus       271 ~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 1wak_A          271 NTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGL  350 (397)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCH
T ss_pred             CcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcch
Confidence            99999999999999999999999642211                                                   


Q ss_pred             ------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                  .....+.+++.+||+.||.+|||++++++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          351 FEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                        11234678999999999999999999985

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=7.7e-35  Score=250.41  Aligned_cols=208  Identities=17%  Similarity=0.198  Sum_probs=160.9

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeH-------------------------HHHhhhcCCCceeeeee
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKL-------------------------DKVVHVAHHKNLVCLLG   75 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~-------------------------~~~l~~~~h~~iv~~~~   75 (266)
                      .-.+.|.+.+.||+|+||.||+|...  .+..||+|++                         ..+++.++||||+++++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   96 (362)
T 3pg1_A           19 AMQSPYTVQRFISSGSYGAVCAGVDS--EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLRD   96 (362)
T ss_dssp             HTTCSCEEEEEEEEETTEEEEEEECT--TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSE
T ss_pred             HhccceEEeEEeccCCCEEEEEEECC--CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccceee
Confidence            33568999999999999999999974  5889999965                         14788899999999999


Q ss_pred             EEEeC-----CeEEEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           76 YHIEQ-----ECRLLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        76 ~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      ++...     ...++||||+. ++|.+++.... .++      +..++..++.++|..+++|+     ||+++.++.++|
T Consensus        97 ~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl  175 (362)
T 3pg1_A           97 IFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITI  175 (362)
T ss_dssp             EEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEE
T ss_pred             eEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEE
Confidence            98542     36899999998 48888887543 333      45566777788888888887     899999999999


Q ss_pred             eecCcceeeccccccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC--------------
Q 042690          139 SDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD--------------  203 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~--------------  203 (266)
                      +|||++.....  ........+|+.|+|||++.+ ..++.++||||||+++|+|++|+.||.....              
T Consensus       176 ~Dfg~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~  253 (362)
T 3pg1_A          176 CDFNLAREDTA--DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTP  253 (362)
T ss_dssp             CCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             EecCccccccc--ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCC
Confidence            99999975432  222334567899999998876 6689999999999999999999999975221              


Q ss_pred             ---------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ---------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ---------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                       +.....+.+++.+||+.||.+|||++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          254 KIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             CHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence                                             122455788999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=244.15  Aligned_cols=211  Identities=14%  Similarity=0.157  Sum_probs=153.0

Q ss_pred             HhcccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           19 VFGSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        19 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      +...+.+|.+.+.||+|+||.||+|.+. .++..||+|.+.                .+++.++||||+++++++..++.
T Consensus        20 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~   98 (318)
T 2dyl_A           20 YQAEINDLENLGEMGSGTCGQVWKMRFR-KTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTD   98 (318)
T ss_dssp             EECCGGGEEEEEEC------CEEEEEET-TTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred             hhhhhccccccceeeecCCeeEEEEEEe-cCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCc
Confidence            3345778999999999999999999986 578899999864                14667799999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhh-cCCCC------HHHHHHHHHHHhhhc-Ccccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           83 RLLVYKFMHNRSISSLLYE-CLRPT------WQQRMQDCIRDCWRT-RALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~-~~~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      .++||||+ ++.+..+... ...+.      +..++..++.++|.. +++|+     ||+++.++.++|+|||++.....
T Consensus        99 ~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A           99 VFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             EEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             EEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            99999999 5566665543 23333      445555666777763 66666     99999999999999999976542


Q ss_pred             ccccccccccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------Ccc
Q 042690          150 NQTQTLTGMRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPK  205 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~  205 (266)
                      .  .......+++.|+|||++.     +..++.++||||||+++|+|++|+.||....                   ...
T Consensus       178 ~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (318)
T 2dyl_A          178 D--KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMG  255 (318)
T ss_dssp             -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSC
T ss_pred             C--ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCC
Confidence            2  2223456899999999884     4567889999999999999999999996511                   112


Q ss_pred             ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 ~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      ....+.+++.+||+.||.+||+++++++
T Consensus       256 ~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          256 FSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            4567889999999999999999999875

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=244.32  Aligned_cols=206  Identities=20%  Similarity=0.293  Sum_probs=165.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhc----CCCceeeeeeEEEe
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVA----HHKNLVCLLGYHIE   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~----~h~~iv~~~~~~~~   79 (266)
                      ++|.+.+.||+|+||.||+|.+. .++..||+|.+.                    ..++.+    +||||+++++++..
T Consensus        31 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~  109 (312)
T 2iwi_A           31 AEYRLGPLLGKGGFGTVFAGHRL-TDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET  109 (312)
T ss_dssp             --CEEEEEEEEETTEEEEEEECT-TTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC--
T ss_pred             hceEEeeEEEcCCCEEEEEEEEc-cCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec
Confidence            47999999999999999999975 678889999763                    255555    89999999999998


Q ss_pred             CCeEEEEEEc-CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec-CCCEEEEeecCccee
Q 042690           80 QECRLLVYKF-MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH-DYFTVETSDLGLAKL  146 (266)
Q Consensus        80 ~~~~~lv~e~-~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~-~~~~~~l~Dfg~a~~  146 (266)
                      .+..++|||+ +.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++ .++.++|+|||++..
T Consensus       110 ~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~  189 (312)
T 2iwi_A          110 QEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGAL  189 (312)
T ss_dssp             ---CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEE
T ss_pred             CCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhh
Confidence            8899999999 78899999998766554      44556666678887777776     89999 899999999999987


Q ss_pred             eccccccccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccC---------CCCccccchHHHHHHH
Q 042690          147 LMINQTQTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQ---------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~---------~~~~~~~~~~~~l~~~  216 (266)
                      ....   ......++..|+|||++.+..+ +.++||||||+++|+|++|+.||..         ..+......+.+++.+
T Consensus       190 ~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~li~~  266 (312)
T 2iwi_A          190 LHDE---PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRR  266 (312)
T ss_dssp             CCSS---CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHTCCCCCTTSCHHHHHHHHH
T ss_pred             cccC---cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHHhhhccCCcccCCHHHHHHHHH
Confidence            6422   2334568999999998876665 4589999999999999999999865         2234566788999999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+||+++++++
T Consensus       267 ~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          267 CLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             HTCSSTTTSCCHHHHHH
T ss_pred             HccCChhhCcCHHHHhc
Confidence            99999999999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.6e-35  Score=242.76  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=169.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.|++|++.                ++++.++||||+++++++...+..++||
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~-~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDR-ITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            57999999999999999999975 578889999753                3777889999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC---CEEEEeecCcceeecccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY---FTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~---~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||+++++|.+++.....++      +..++..++..+|..+++|+     ||+++.+   +.++|+|||++......  .
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~--~  178 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN--T  178 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCC--S
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCC--C
Confidence            9999999999987665544      44556666688888877776     8999754   47999999999765322  2


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKPVMIA  214 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~~~l~  214 (266)
                      ......+++.|+|||.+.+ .++.++|+||||+++|+|++|..||....               .    ......+.+++
T Consensus       179 ~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  257 (287)
T 2wei_A          179 KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLI  257 (287)
T ss_dssp             SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHH
T ss_pred             ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHH
Confidence            2233457889999998876 48899999999999999999999986521               0    23456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+||++.++++
T Consensus       258 ~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          258 RKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcccChhhCcCHHHHhc
Confidence            9999999999999999986

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=247.66  Aligned_cols=204  Identities=16%  Similarity=0.238  Sum_probs=164.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCe-----
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQEC-----   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~-----   82 (266)
                      .+|.+.+.||+|+||.||+|.+. .++..||+|++.                .+++.++||||+++++++...+.     
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDK-RSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEEC-CCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            57999999999999999999976 678899999763                37778899999999999977653     


Q ss_pred             -EEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           83 -RLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        83 -~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                       .++||||+.+ +|.+++...-.    ..+..++..++.++|.++++|+     ||+++.++.++|+|||++.....   
T Consensus       103 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~---  178 (353)
T 3coi_A          103 DFYLVMPFMQT-DLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---  178 (353)
T ss_dssp             CCEEEEECCSE-EGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC------
T ss_pred             eEEEEeccccC-CHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCC---
Confidence             4999999974 88887753211    2355667777788888888887     89999999999999999976432   


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                       ......+|+.|+|||.+.+ ..++.++||||||+++|+|++|+.||....                             
T Consensus       179 -~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  257 (353)
T 3coi_A          179 -EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAK  257 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHH
T ss_pred             -CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHH
Confidence             1234567999999998876 678999999999999999999999987522                             


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       .+.....+.+++.+||+.||.+||+++++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          258 SYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                             1233567789999999999999999999985

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.5e-34  Score=241.63  Aligned_cols=209  Identities=17%  Similarity=0.191  Sum_probs=163.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcC--CCceeeeeeEEEeCCeE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAH--HKNLVCLLGYHIEQECR   83 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~--h~~iv~~~~~~~~~~~~   83 (266)
                      .-..|.+.+.||+|+||.||++.+.  +++.||+|.+.                .+++.++  ||||+++++++..++..
T Consensus        26 ~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~  103 (313)
T 3cek_A           26 KGRIYSILKQIGSGGSSKVFQVLNE--KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI  103 (313)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECT--TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEE
T ss_pred             ccceEEEEEEecCCCCEEEEEEEcC--CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEE
Confidence            3457999999999999999999974  58889999763                2566676  59999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++||| +.+++|.+++.....+.      +..++..++.++|..+++|+     ||+++ ++.++|+|||++........
T Consensus       104 ~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~  181 (313)
T 3cek_A          104 YMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  181 (313)
T ss_dssp             EEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC------
T ss_pred             EEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCccc
Confidence            99999 55779999998766554      34556667788888888877     89996 48999999999987643222


Q ss_pred             c-ccccccCCCCcCCccccCC-----------CCCCcccchhhHHHHHHHHHhCCCcccCCC------------------
Q 042690          153 Q-TLTGMRETKGYLPPEWFRN-----------MPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------  202 (266)
Q Consensus       153 ~-~~~~~~~~~~y~aPE~~~~-----------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------  202 (266)
                      . ......+++.|+|||.+.+           ..++.++||||||+++|+|++|+.||....                  
T Consensus       182 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  261 (313)
T 3cek_A          182 SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEF  261 (313)
T ss_dssp             --------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCC
T ss_pred             cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCC
Confidence            2 2234568999999998865           467889999999999999999999986521                  


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      +......+.+++.+||+.||.+||+++++++.
T Consensus       262 ~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          262 PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence            22234568899999999999999999999864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.1e-34  Score=253.70  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=157.9

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcCCCC
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFMHNR   93 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~~   93 (266)
                      |...+.||+|+||+||.+..  .+++.||+|++.           .+++.+ +||||+++++++.+++..++||||+. +
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~--~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-g   93 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGS--FQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-L   93 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEE--SSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-E
T ss_pred             eeccCeEeeCCCeEEEEEEE--ECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-C
Confidence            44568899999999986654  478899999753           255554 89999999999999999999999996 5


Q ss_pred             CHHHHHhhcCCC-------------CHHHHHHHHHHHhhhcCcccc-----ceeecCC-------------CEEEEeecC
Q 042690           94 SISSLLYECLRP-------------TWQQRMQDCIRDCWRTRALAC-----RILLHDY-------------FTVETSDLG  142 (266)
Q Consensus        94 ~L~~~l~~~~~~-------------~~~~~l~~~~~~~~~~~~~h~-----nili~~~-------------~~~~l~Dfg  142 (266)
                      +|.+++......             .+..++..++.++|..+++|+     ||+++.+             +.++|+|||
T Consensus        94 sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG  173 (434)
T 2rio_A           94 NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG  173 (434)
T ss_dssp             EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCT
T ss_pred             CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccc
Confidence            999999754321             266778888899998888887     8999754             489999999


Q ss_pred             cceeecccccc---ccccccCCCCcCCccccCC-------CCCCcccchhhHHHHHHHHHh-CCCcccCCCC--------
Q 042690          143 LAKLLMINQTQ---TLTGMRETKGYLPPEWFRN-------MPVTVKVDVYSFGVMLLEIIS-CRCVERQGSD--------  203 (266)
Q Consensus       143 ~a~~~~~~~~~---~~~~~~~~~~y~aPE~~~~-------~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~~--------  203 (266)
                      ++.........   ......||+.|+|||++.+       ..++.++|||||||++|+|+| |..||.....        
T Consensus       174 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~  253 (434)
T 2rio_A          174 LCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRG  253 (434)
T ss_dssp             TCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHT
T ss_pred             cceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcC
Confidence            99876533221   1234578999999998865       568899999999999999999 8889864211        


Q ss_pred             ------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                  ......+.+++.+||+.||.+||++.++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          254 IFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             CCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence                        112356789999999999999999999875

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.9e-34  Score=245.58  Aligned_cols=205  Identities=16%  Similarity=0.193  Sum_probs=165.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCc------eeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKN------LVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~------iv~~~~~~~~~~~~~   84 (266)
                      ++|.+.+.||+|+||.||+|.+....+..||+|.+.             .+++.++|++      ++.+++++...+..+
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~   98 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC   98 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEE
Confidence            589999999999999999999864455789999864             2556666554      899999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceee-------------------cC
Q 042690           85 LVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILL-------------------HD  132 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili-------------------~~  132 (266)
                      +||||+ +++|.+++....  .++      +..++..++.++|..+++|+     ||++                   +.
T Consensus        99 lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~  177 (355)
T 2eu9_A           99 IAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVK  177 (355)
T ss_dssp             EEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEES
T ss_pred             EEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccC
Confidence            999999 557877776543  333      44566777788888888887     8999                   66


Q ss_pred             CCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCcc-------
Q 042690          133 YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK-------  205 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~-------  205 (266)
                      ++.++|+|||++....    .......+|+.|+|||++.+..++.++||||||+++|+|++|..||.......       
T Consensus       178 ~~~~kl~Dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~  253 (355)
T 2eu9_A          178 NTSIRVADFGSATFDH----EHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEK  253 (355)
T ss_dssp             CCCEEECCCTTCEETT----SCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             CCcEEEeecCcccccc----ccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            7899999999998643    22234568999999999998899999999999999999999999997522110       


Q ss_pred             ----------------------------------------------------ccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          206 ----------------------------------------------------TLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       206 ----------------------------------------------------~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                          ....+.+++.+||+.||.+|||++++++
T Consensus       254 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          254 ILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             HHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                                                                1235679999999999999999999874

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.5e-34  Score=249.28  Aligned_cols=205  Identities=15%  Similarity=0.202  Sum_probs=162.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC-----------CCceeeeeeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH-----------HKNLVCLLGYHI   78 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~-----------h~~iv~~~~~~~   78 (266)
                      .++|.+.+.||+|+||.||+|.+. .+++.||+|.+.             .+++.+.           ||||+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDM-VNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEec-CCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            358999999999999999999975 678899999764             2444443           899999999987


Q ss_pred             eCC----eEEEEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhc-Ccccc-----ceeec------CCC
Q 042690           79 EQE----CRLLVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRT-RALAC-----RILLH------DYF  134 (266)
Q Consensus        79 ~~~----~~~lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~-~~~h~-----nili~------~~~  134 (266)
                      ..+    ..++||||+ +++|.+++....  .++      +..++..++.++|.. +++|+     ||+++      ..+
T Consensus        97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~  175 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLI  175 (373)
T ss_dssp             EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEE
T ss_pred             ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcc
Confidence            654    688999999 789999997633  233      445666677888876 77776     89995      445


Q ss_pred             EEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------
Q 042690          135 TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------  203 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------  203 (266)
                      .++|+|||++.....    ......+|+.|+|||++.+..++.++||||||+++|+|+||+.||.....           
T Consensus       176 ~~kl~Dfg~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  251 (373)
T 1q8y_A          176 QIKIADLGNACWYDE----HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIA  251 (373)
T ss_dssp             EEEECCCTTCEETTB----CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHH
T ss_pred             eEEEcccccccccCC----CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHH
Confidence            899999999987532    22345689999999999988899999999999999999999999974221           


Q ss_pred             ----------------------------------------------------ccccchHHHHHHHhhhcCCCCCCCHHHH
Q 042690          204 ----------------------------------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIV  231 (266)
Q Consensus       204 ----------------------------------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~i  231 (266)
                                                                          ......+.+++.+||+.||.+|||++++
T Consensus       252 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el  331 (373)
T 1q8y_A          252 QIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGL  331 (373)
T ss_dssp             HHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHH
T ss_pred             HHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHH
Confidence                                                                1223466789999999999999999999


Q ss_pred             HH
Q 042690          232 AL  233 (266)
Q Consensus       232 l~  233 (266)
                      ++
T Consensus       332 l~  333 (373)
T 1q8y_A          332 VN  333 (373)
T ss_dssp             HT
T ss_pred             hh
Confidence            86

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=5.7e-34  Score=246.93  Aligned_cols=172  Identities=18%  Similarity=0.245  Sum_probs=138.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcC-CC-----ceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAH-HK-----NLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~-h~-----~iv~~~~~~~~~~~~   83 (266)
                      .++|.+.+.||+|+||+||+|.+. .+++.||+|++.             .+++.+. |+     +|+++++++...+..
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDR-VEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEET-TTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEc-CCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            467999999999999999999975 678889999864             2444443 44     599999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhh--cCcccc-----ceeec--CCCEEEEeecCccee
Q 042690           84 LLVYKFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWR--TRALAC-----RILLH--DYFTVETSDLGLAKL  146 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~--~~~~h~-----nili~--~~~~~~l~Dfg~a~~  146 (266)
                      ++||||+.+ +|.+++....  .++      +..++..++.++|.  .+++|+     ||+++  .++.+||+|||++..
T Consensus       132 ~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~  210 (382)
T 2vx3_A          132 CLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQ  210 (382)
T ss_dssp             EEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             EEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCcee
Confidence            999999965 9999998653  233      34555566676663  356665     99995  478899999999987


Q ss_pred             eccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC
Q 042690          147 LMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ  200 (266)
Q Consensus       147 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~  200 (266)
                      ...    ......+|+.|+|||++.+..++.++|||||||++|+|+||+.||..
T Consensus       211 ~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~  260 (382)
T 2vx3_A          211 LGQ----RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG  260 (382)
T ss_dssp             TTC----CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ccc----ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            532    22346689999999999998999999999999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=248.92  Aligned_cols=207  Identities=16%  Similarity=0.205  Sum_probs=159.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~   91 (266)
                      ..|.+.+.||+|+||+|+....  .+++.||||++.           .+++.+ +||||+++++++.+....++||||+.
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~~--~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  101 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRGM--FDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA  101 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEE--SSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             EEEecCCeeecCcCEEEEEEEE--eCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence            4699999999999998654433  378899999874           377777 79999999999999999999999997


Q ss_pred             CCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecC-----CCEEEEeecCcceeeccccc--
Q 042690           92 NRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHD-----YFTVETSDLGLAKLLMINQT--  152 (266)
Q Consensus        92 ~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~-----~~~~~l~Dfg~a~~~~~~~~--  152 (266)
                      + +|.+++.....       ..+..++..++.++|..+++|+     ||+++.     ...++|+|||+++.......  
T Consensus       102 g-~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~  180 (432)
T 3p23_A          102 A-TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSF  180 (432)
T ss_dssp             E-EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-------
T ss_pred             C-CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcce
Confidence            4 99999975432       2466778888899998888887     899953     23678999999987643221  


Q ss_pred             cccccccCCCCcCCccccC---CCCCCcccchhhHHHHHHHHHh-CCCcccCCCC------------------ccccchH
Q 042690          153 QTLTGMRETKGYLPPEWFR---NMPVTVKVDVYSFGVMLLEIIS-CRCVERQGSD------------------PKTLEKP  210 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~~~------------------~~~~~~~  210 (266)
                      .......||+.|+|||++.   ...++.++|||||||++|+|+| |..||.....                  ......+
T Consensus       181 ~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (432)
T 3p23_A          181 SRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIA  260 (432)
T ss_dssp             -----CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHH
T ss_pred             eeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHH
Confidence            2233467899999999987   4567889999999999999999 8888864211                  1112346


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.||.+||+++++++
T Consensus       261 ~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          261 RELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHhCCHhhCCCHHHHHh
Confidence            78999999999999999999973

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.1e-33  Score=231.90  Aligned_cols=190  Identities=12%  Similarity=0.058  Sum_probs=157.7

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|.+.+.||+|+||.||+|.+. .+++.||+|.+.                 ..++.++||||+++++++..++..|+|
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDT-ALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEET-TTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEec-CCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            57999999999999999999985 568899999875                 256788999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           87 YKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |||+++++|.+++.....    ..+..++..++.++|.++++|+     ||+++.+|.++|++++               
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~---------------  174 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA---------------  174 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC---------------
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc---------------
Confidence            999999999999965321    2355667777788888888887     9999999999988443               


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----------------------ccccchHHHHHH
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----------------------PKTLEKPVMIAI  215 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----------------------~~~~~~~~~l~~  215 (266)
                            |++       +++.++||||||+++|+|+||+.||.....                      +.....+.+++.
T Consensus       175 ------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  241 (286)
T 3uqc_A          175 ------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAA  241 (286)
T ss_dssp             ------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHH
T ss_pred             ------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHH
Confidence                  333       367899999999999999999999976322                      224456789999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      +||+.||.+| |+.++++.|+.......
T Consensus       242 ~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          242 RSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             HHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             HHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            9999999999 99999999999876543

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.3e-33  Score=257.52  Aligned_cols=217  Identities=19%  Similarity=0.157  Sum_probs=170.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe------CC
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE------QE   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~------~~   81 (266)
                      +++|.+.+.||+|+||.||+|.+. .++..||+|++.               .+++.++||||+++++++..      .+
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~-~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~   91 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQ-DTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND   91 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCT-TTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEEC-CCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence            468999999999999999999975 678899999753               47889999999999998754      56


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC---C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCE---EEEeecCcc
Q 042690           82 CRLLVYKFMHNRSISSLLYECL---R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFT---VETSDLGLA  144 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~---~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~---~~l~Dfg~a  144 (266)
                      ..++||||+++++|.+++....   .      ..+..++..++.++|..+++|+     ||+++.++.   ++|+|||++
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a  171 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA  171 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccc
Confidence            7899999999999999998643   2      2355667777788888888887     899997664   999999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------------
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------------  201 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------------  201 (266)
                      ......  .......+++.|+|||.+.+..++.++||||||+++|+|++|..||...                       
T Consensus       172 ~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~  249 (676)
T 3qa8_A          172 KELDQG--ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDD  249 (676)
T ss_dssp             CBTTSC--CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCC
T ss_pred             cccccc--cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhh
Confidence            875422  2334467899999999999889999999999999999999999998531                       


Q ss_pred             ----------------CCccccchHHHHHHHhhhcCCCCCCCHHH-----HHHHHHHHHhCC
Q 042690          202 ----------------SDPKTLEKPVMIAIQFVKEKPPLRPSLRI-----VALMLQSILEVP  242 (266)
Q Consensus       202 ----------------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~-----il~~l~~~~~~~  242 (266)
                                      ........+.+++.+||+.||.+||++++     +++.++.+....
T Consensus       250 l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~k  311 (676)
T 3qa8_A          250 LTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSLK  311 (676)
T ss_dssp             CSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCCC
T ss_pred             hccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhcc
Confidence                            01123466889999999999999999987     556676665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.1e-33  Score=258.96  Aligned_cols=208  Identities=15%  Similarity=0.154  Sum_probs=162.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe-----E
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC-----R   83 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~-----~   83 (266)
                      ++|.+.+.||+|+||.||+|.+...+++.|++|.+.               .+++.++||||+++++++...+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            579999999999999999999864468899999763               36788999999999999987654     7


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |+||||+++++|.+++...-.    ..+..++..++.++|.++++|+     ||+++.+ .+||+|||+++.....    
T Consensus       160 ~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~----  234 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF----  234 (681)
T ss_dssp             EEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC----
T ss_pred             EEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC----
Confidence            999999999999998865211    2344566667788888888877     8999885 8999999999875422    


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC----c-----cccchHHHHHHHhhhcCCCCC
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD----P-----KTLEKPVMIAIQFVKEKPPLR  225 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~----~-----~~~~~~~~l~~~cl~~~p~~R  225 (266)
                       ....||+.|+|||++.+.. +.++||||||+++|+|++|..|+.....    .     .....+.+++.+||+.||.+|
T Consensus       235 -~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R  312 (681)
T 2pzi_A          235 -GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQR  312 (681)
T ss_dssp             -SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHHHHHHHHHHTCSSGGGS
T ss_pred             -CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccccccccccccCHHHHHHHhhhccCChhhC
Confidence             3456899999999887654 8899999999999999999888764211    1     123467789999999999999


Q ss_pred             CC-HHHHHHHHHHH
Q 042690          226 PS-LRIVALMLQSI  238 (266)
Q Consensus       226 ps-~~~il~~l~~~  238 (266)
                      |+ ++++...|...
T Consensus       313 ~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          313 FTTAEEMSAQLTGV  326 (681)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            95 56666666654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=4.6e-32  Score=227.30  Aligned_cols=199  Identities=14%  Similarity=0.162  Sum_probs=158.4

Q ss_pred             cCceeee-eccCCCcceEEEEEEEcCCCcceeeeeeHHH---------H-hhhcCCCceeeeeeEEEe----CCeEEEEE
Q 042690           23 FSHIYSL-KKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK---------V-VHVAHHKNLVCLLGYHIE----QECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~-~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~---------~-l~~~~h~~iv~~~~~~~~----~~~~~lv~   87 (266)
                      .++|++. +.||+|+||.||++.+. .++..||+|.+..         + .+..+||||+++++++..    ....++||
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~-~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~   94 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNK-RTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVM   94 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEc-CCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEE
Confidence            3467777 77999999999999976 6788999998752         3 366789999999999987    66789999


Q ss_pred             EcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeecccc
Q 042690           88 KFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ||+++++|.+++....  .++      +..++..++.++|..+++|+     ||+++.   ++.++|+|||++....   
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~---  171 (299)
T 3m2w_A           95 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT---  171 (299)
T ss_dssp             CCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT---
T ss_pred             eecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc---
Confidence            9999999999998654  233      45666677788888887776     899998   7899999999987532   


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccccc
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTLE  208 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~~  208 (266)
                                          +..++.++||||||+++|+|+||+.||.....                       .....
T Consensus       172 --------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (299)
T 3m2w_A          172 --------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE  231 (299)
T ss_dssp             --------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCH
T ss_pred             --------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCH
Confidence                                23467899999999999999999999964210                       23456


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHH--HHHHHHhCCCCC
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVAL--MLQSILEVPSPP  245 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~--~l~~~~~~~~~~  245 (266)
                      .+.+++.+||+.||.+||+++++++  .+......+..+
T Consensus       232 ~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~~~~~~~  270 (299)
T 3m2w_A          232 EVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTP  270 (299)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGGGSCCCB
T ss_pred             HHHHHHHHHcccChhhCCCHHHHhcChhhcccccCCCCC
Confidence            7889999999999999999999986  455555444443

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=6.4e-31  Score=230.02  Aligned_cols=203  Identities=10%  Similarity=0.013  Sum_probs=150.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCC-Cce---------eeeee
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHH-KNL---------VCLLG   75 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h-~~i---------v~~~~   75 (266)
                      ...|...+.||+|+||.||+|.+. .+++.||||++.                 .+++.++| +|.         +...+
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~-~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQ-ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             ceeEEEecccccCCCEEEEEEEec-CCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            345888999999999999999976 678899999765                 24555655 211         11111


Q ss_pred             E------------EEe-----CCeEEEEEEcCCCCCHHHHHhhc-------------CCCCHHHHHHHHHHHhhhcCccc
Q 042690           76 Y------------HIE-----QECRLLVYKFMHNRSISSLLYEC-------------LRPTWQQRMQDCIRDCWRTRALA  125 (266)
Q Consensus        76 ~------------~~~-----~~~~~lv~e~~~~~~L~~~l~~~-------------~~~~~~~~l~~~~~~~~~~~~~h  125 (266)
                      .            ...     ....+++|+++ +++|.+++...             ..+.+..++..++.++|.++++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiH  234 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVH  234 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            1            111     12357778876 56999988511             11334466777778888888887


Q ss_pred             c-----ceeecCCCEEEEeecCcceeeccccccccccccCCCCcCCcccc----------CCCCCCcccchhhHHHHHHH
Q 042690          126 C-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWF----------RNMPVTVKVDVYSFGVMLLE  190 (266)
Q Consensus       126 ~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~Di~slG~i~~~  190 (266)
                      +     |||++.++.+||+|||+++.....    .....| +.|+|||++          .+..++.++|||||||++|+
T Consensus       235 rDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~e  309 (413)
T 3dzo_A          235 TYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYW  309 (413)
T ss_dssp             SCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHH
T ss_pred             CCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHH
Confidence            7     999999999999999999865322    334566 999999988          55568889999999999999


Q ss_pred             HHhCCCcccCCC-----------CccccchHHHHHHHhhhcCCCCCCCHHHHH
Q 042690          191 IISCRCVERQGS-----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVA  232 (266)
Q Consensus       191 l~tg~~p~~~~~-----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il  232 (266)
                      |+||+.||....           ....+..+.+++.+||+.||.+||++.+++
T Consensus       310 lltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          310 IWCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             HHHSSCCCCTTGGGSCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             HHHCCCCCCCcchhhhHHHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            999999997632           134556888999999999999999976663

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.96  E-value=1.1e-30  Score=222.41  Aligned_cols=195  Identities=12%  Similarity=0.033  Sum_probs=147.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------------HHhhhcC---------CCce
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------------KVVHVAH---------HKNL   70 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------------~~l~~~~---------h~~i   70 (266)
                      ..++|.+.+.||+|+||.||+|.+   ++..||+|++.                      .+++.++         ||||
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~---~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~ni   94 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA---DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGF   94 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE---TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCB
T ss_pred             ccccchheeeecccCceEEEEEEe---CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCch
Confidence            356899999999999999999997   57899999764                      1445554         6666


Q ss_pred             eeeeeEE-----------------Ee-------------CCeEEEEEEcCCCCCHHHHHhhcCC------CCHHHHHHHH
Q 042690           71 VCLLGYH-----------------IE-------------QECRLLVYKFMHNRSISSLLYECLR------PTWQQRMQDC  114 (266)
Q Consensus        71 v~~~~~~-----------------~~-------------~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~l~~~  114 (266)
                      +++.+++                 .+             .+..++||||+++|++.+.+.. ..      ..+..++..+
T Consensus        95 v~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-~~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           95 IGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-KLSSLATAKSILHQLTAS  173 (336)
T ss_dssp             CCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-TCCCHHHHHHHHHHHHHH
T ss_pred             hhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence            6655553                 32             6789999999999876666543 22      3455667777


Q ss_pred             HHHhh-hcCcccc-----ceeecCCC--------------------EEEEeecCcceeeccccccccccccCCCCcCCcc
Q 042690          115 IRDCW-RTRALAC-----RILLHDYF--------------------TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE  168 (266)
Q Consensus       115 ~~~~~-~~~~~h~-----nili~~~~--------------------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE  168 (266)
                      +.++| .++++|+     |||++.++                    .+||+|||+|+....      ....||+.|+|||
T Consensus       174 L~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------~~~~gt~~y~aPE  247 (336)
T 2vuw_A          174 LAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------GIVVFCDVSMDED  247 (336)
T ss_dssp             HHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------TEEECCCCTTCSG
T ss_pred             HHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------CcEEEeecccChh
Confidence            78888 7777777     99999887                    999999999987642      1246899999999


Q ss_pred             ccCCCCCCcccchhhHHHH-HHHHHhCCCcccCC---------------C--------CccccchHHHHHHHhhhcCCCC
Q 042690          169 WFRNMPVTVKVDVYSFGVM-LLEIISCRCVERQG---------------S--------DPKTLEKPVMIAIQFVKEKPPL  224 (266)
Q Consensus       169 ~~~~~~~~~~~Di~slG~i-~~~l~tg~~p~~~~---------------~--------~~~~~~~~~~l~~~cl~~~p~~  224 (266)
                      ++.+.. +.++||||++++ .+++++|..||...               .        .+.....+.+++.+||+.|   
T Consensus       248 ~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d---  323 (336)
T 2vuw_A          248 LFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS---  323 (336)
T ss_dssp             GGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS---
T ss_pred             hhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC---
Confidence            998766 899999998777 77788888887530               0        1124456778999999866   


Q ss_pred             CCCHHHHH
Q 042690          225 RPSLRIVA  232 (266)
Q Consensus       225 Rps~~~il  232 (266)
                        |+++++
T Consensus       324 --sa~e~l  329 (336)
T 2vuw_A          324 --SATDLL  329 (336)
T ss_dssp             --SHHHHH
T ss_pred             --CHHHHH
Confidence              777776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.90  E-value=2.2e-25  Score=201.94  Aligned_cols=166  Identities=11%  Similarity=-0.030  Sum_probs=110.9

Q ss_pred             HHhhhc-CCCceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCC---HHHHHHHHHHHhhhcCcccc-----ceee
Q 042690           60 KVVHVA-HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPT---WQQRMQDCIRDCWRTRALAC-----RILL  130 (266)
Q Consensus        60 ~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~h~-----nili  130 (266)
                      ++|+++ .|+||+++++++++++..||||||++|++|.++|.+.+.++   +..++..++.++|.++++|+     |||+
T Consensus       293 ~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL  372 (569)
T 4azs_A          293 KFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMV  372 (569)
T ss_dssp             HHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEE
T ss_pred             HHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEE
Confidence            377787 59999999999999999999999999999999999877655   45667777789998888888     9999


Q ss_pred             cCCCEEEEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC--CCccccc
Q 042690          131 HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG--SDPKTLE  208 (266)
Q Consensus       131 ~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~--~~~~~~~  208 (266)
                      +.+|.+||+|||+|+..... ........||+.|||||++.+. +..++|+||+|++.+++.++..++...  ..+....
T Consensus       373 ~~dg~vKL~DFGlAr~~~~~-~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~~~~~l~~~~~~~~  450 (569)
T 4azs_A          373 DARQHARLIDFGSIVTTPQD-CSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERW  450 (569)
T ss_dssp             CTTSCEEECCCTTEESCC----CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHHHHHHHTSCGGGC
T ss_pred             CCCCCEEEeecccCeeCCCC-CccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccchhHHHhhcCCCCCC
Confidence            99999999999999876432 2233446799999999998764 567899999999988876655443210  0111122


Q ss_pred             hHHHHHHHhhhcCCCCCCC
Q 042690          209 KPVMIAIQFVKEKPPLRPS  227 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps  227 (266)
                      .+..+...+...+|..||.
T Consensus       451 ~~~~l~~~l~~~~~~~~~~  469 (569)
T 4azs_A          451 NFVLLLALFEKKAKLPSAE  469 (569)
T ss_dssp             SHHHHHHHHHTGGGSCCGG
T ss_pred             cHHHHHHHHhCCCCCCCCC
Confidence            3445555566666665554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.84  E-value=5.6e-22  Score=178.62  Aligned_cols=165  Identities=7%  Similarity=0.109  Sum_probs=126.9

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeH----------------------HHHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKL----------------------DKVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~----------------------~~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      ..+.||+|+||.||++.+   .+..+++|+.                      .++++.++||||+++..++......++
T Consensus       340 ~~~~LG~G~fg~Vy~~~~---~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY---LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             --------CCEEEEEEEC---SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred             CCCEEeeCCCEEEEEEEE---CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence            356899999999999964   4566677652                      147888999999976666667777899


Q ss_pred             EEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc------
Q 042690           86 VYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT------  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~------  154 (266)
                      ||||+++++|.+++..  ...+..++..++.++|.++++|+     ||+++.  .+||+|||+++.........      
T Consensus       417 VmE~~~ggsL~~~l~~--~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~  492 (540)
T 3en9_A          417 MMSYINGKLAKDVIED--NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVF  492 (540)
T ss_dssp             EEECCCSEEHHHHSTT--CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhh
Confidence            9999999999999987  67888899999999998888887     899998  99999999999875332221      


Q ss_pred             cccccCCCCcCCccccCC--CCCCcccchhhHHHHHHHHHhCCCccc
Q 042690          155 LTGMRETKGYLPPEWFRN--MPVTVKVDVYSFGVMLLEIISCRCVER  199 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~--~~~~~~~Di~slG~i~~~l~tg~~p~~  199 (266)
                      .....||+.|||||++.+  ..|+...|+|+..+-..+.+.++.++.
T Consensus       493 ~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          493 KKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             hhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            134578999999999876  457778899999998888888776553

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.68  E-value=2.4e-17  Score=136.68  Aligned_cols=124  Identities=8%  Similarity=-0.067  Sum_probs=97.0

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------------------HHhhhcCCCceeee
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------------------KVVHVAHHKNLVCL   73 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------------------~~l~~~~h~~iv~~   73 (266)
                      |.+.+.||+|+||.||+|.+  .++..||+|.+.                                .+++.++  | +++
T Consensus        92 ~~~~~~iG~G~~g~Vy~~~~--~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~-~~v  166 (282)
T 1zar_A           92 DAIGKLMGEGKESAVFNCYS--EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G-LAV  166 (282)
T ss_dssp             SEEEEEEEECSSEEEEEEEE--TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-SSS
T ss_pred             EEecCEeccCCCceEEEEEe--CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-CCc
Confidence            33449999999999999998  578899999862                                2555666  5 677


Q ss_pred             eeEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeec
Q 042690           74 LGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLM  148 (266)
Q Consensus        74 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~  148 (266)
                      .+++.. +..++||||+++++|.+ +.......+..++..++.++|.++++|+     ||+++ ++.++|+|||++..  
T Consensus       167 ~~~~~~-~~~~lvmE~~~g~~L~~-l~~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~~--  241 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELIDAKELYR-VRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVE--  241 (282)
T ss_dssp             CCEEEE-ETTEEEEECCCCEEGGG-CCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCEE--
T ss_pred             CeEEec-cceEEEEEecCCCcHHH-cchhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCeE--
Confidence            776544 45689999999999999 5443345677788888888888888887     99999 99999999999974  


Q ss_pred             cccccccccccCCCCcCCccccC
Q 042690          149 INQTQTLTGMRETKGYLPPEWFR  171 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~  171 (266)
                                  +..++|||.+.
T Consensus       242 ------------~~~~~a~e~l~  252 (282)
T 1zar_A          242 ------------VGEEGWREILE  252 (282)
T ss_dssp             ------------TTSTTHHHHHH
T ss_pred             ------------CCCCCHHHHHH
Confidence                        33467888764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.36  E-value=8e-13  Score=107.96  Aligned_cols=116  Identities=16%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcce--eeeeeH--------------------------------------HHHhhh
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTN--IGVKKL--------------------------------------DKVVHV   64 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~--vaiK~~--------------------------------------~~~l~~   64 (266)
                      -|.+.+.||+|+||.||+|.+. .++..  ||+|..                                      ...++.
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~-~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  126 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGV-FDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER  126 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEE-ETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEc-CCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence            3678899999999999999973 35677  999952                                      124556


Q ss_pred             cCCCce--eeeeeEEEeCCeEEEEEEcCCC-C----CHHHHHhhc---CCCCHHHHHHHHHHHhh-hcCcccc-----ce
Q 042690           65 AHHKNL--VCLLGYHIEQECRLLVYKFMHN-R----SISSLLYEC---LRPTWQQRMQDCIRDCW-RTRALAC-----RI  128 (266)
Q Consensus        65 ~~h~~i--v~~~~~~~~~~~~~lv~e~~~~-~----~L~~~l~~~---~~~~~~~~l~~~~~~~~-~~~~~h~-----ni  128 (266)
                      +.|+++  ..+++.    ...++||||+.+ |    +|.++....   ....+..++..++.++| ..+++|+     ||
T Consensus       127 l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NI  202 (258)
T 1zth_A          127 AKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNI  202 (258)
T ss_dssp             HHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSE
T ss_pred             HHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHE
Confidence            667654  333332    346799999942 3    788776431   22456677777888888 7777776     99


Q ss_pred             eecCCCEEEEeecCcceee
Q 042690          129 LLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus       129 li~~~~~~~l~Dfg~a~~~  147 (266)
                      |++.  .++|+|||+|...
T Consensus       203 Ll~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          203 MYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             EESS--SEEECCCTTCEET
T ss_pred             EEcC--cEEEEECcccccC
Confidence            9998  8999999999764

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.22  E-value=1.2e-12  Score=112.22  Aligned_cols=120  Identities=8%  Similarity=-0.062  Sum_probs=84.7

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH----------------------------HhhhcCCCceeeeeeEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK----------------------------VVHVAHHKNLVCLLGYH   77 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~----------------------------~l~~~~h~~iv~~~~~~   77 (266)
                      |.+.+.||.|++|.||+|...  +++.||||+.+.                            +.....|+|+.++++..
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d~--~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVADE--KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEECT--TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEecCEeeeCCceEEEEEECC--CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            789999999999999999974  688999997531                            00112255555543321


Q ss_pred             Ee------CCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCC----------EE
Q 042690           78 IE------QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYF----------TV  136 (266)
Q Consensus        78 ~~------~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~----------~~  136 (266)
                      ..      ....+|||||+.+++|.++........+..++..++..+|..+++|+     |||++++|          .+
T Consensus       175 v~vp~p~~~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~  254 (397)
T 4gyi_A          175 FPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTP  254 (397)
T ss_dssp             CSCCCEEEEETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEE
T ss_pred             CCCCeeeeccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccce
Confidence            11      11236999999998887765433233455677777788888888887     99999887          48


Q ss_pred             EEeecCcceee
Q 042690          137 ETSDLGLAKLL  147 (266)
Q Consensus       137 ~l~Dfg~a~~~  147 (266)
                      .++||+-+...
T Consensus       255 ~iID~~Q~V~~  265 (397)
T 4gyi_A          255 IIIXFPQMVSM  265 (397)
T ss_dssp             EECCCTTCEET
T ss_pred             EEEEeCCcccC
Confidence            99999987654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.61  E-value=4.1e-07  Score=73.80  Aligned_cols=74  Identities=16%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcC-CCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAH-HKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      +..|.+...++.|+.+.||++..   .+..+++|...              ..++.+. +..+.++++++...+..|+||
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~---~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~   89 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVG---ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEEC---SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             hccceeEeeccCCCCCeEEEEEC---CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence            44677888899899999999974   35678888742              3555553 567888999998888999999


Q ss_pred             EcCCCCCHHHHH
Q 042690           88 KFMHNRSISSLL   99 (266)
Q Consensus        88 e~~~~~~L~~~l   99 (266)
                      ||++|.+|.+.+
T Consensus        90 e~i~G~~l~~~~  101 (263)
T 3tm0_A           90 SEADGVLCSEEY  101 (263)
T ss_dssp             ECCSSEEHHHHC
T ss_pred             EecCCeehhhcc
Confidence            999999988763

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.38  E-value=1.3e-06  Score=70.49  Aligned_cols=72  Identities=11%  Similarity=-0.028  Sum_probs=49.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcCCCc--eeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAHHKN--LVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~h~~--iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +..+.+....+.|..+.||++..  .++..+++|...           ..++.+.+.+  +.+++++...++..++||||
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~--~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~   96 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSA--QGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE   96 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEEC--TTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred             cCCCceEecccCCCCceEEEEec--CCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence            44555444434666799999975  356678888532           3555554433  55688888877788999999


Q ss_pred             CCCCCHH
Q 042690           90 MHNRSIS   96 (266)
Q Consensus        90 ~~~~~L~   96 (266)
                      ++|.+|.
T Consensus        97 i~G~~l~  103 (264)
T 1nd4_A           97 VPGQDLL  103 (264)
T ss_dssp             CSSEETT
T ss_pred             cCCcccC
Confidence            9998774

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.64  E-value=5.9e-05  Score=63.94  Aligned_cols=71  Identities=11%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcC--CCceeeeeeEEEeC--
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAH--HKNLVCLLGYHIEQ--   80 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~--h~~iv~~~~~~~~~--   80 (266)
                      ........+.++.|.++.||+....   +..+++|+..                 .+++.+.  +..+.+++.++.+.  
T Consensus        36 ~~~~~~~~~~l~~G~sn~~y~v~~~---~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~  112 (359)
T 3dxp_A           36 GFAGPLSVEQFKGGQSNPTFKLVTP---GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV  112 (359)
T ss_dssp             TCCCCCEEEECCC-CCSCEEEEECS---SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT
T ss_pred             CCCCCceEEEcCCcccceEEEEEEC---CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc
Confidence            3344556788999999999998752   3455555442                 3555565  34578888887765  


Q ss_pred             -CeEEEEEEcCCCCCH
Q 042690           81 -ECRLLVYKFMHNRSI   95 (266)
Q Consensus        81 -~~~~lv~e~~~~~~L   95 (266)
                       +..++||||++|.++
T Consensus       113 ~g~~~~vme~v~G~~l  128 (359)
T 3dxp_A          113 IGRAFYIMEFVSGRVL  128 (359)
T ss_dssp             TSSCEEEEECCCCBCC
T ss_pred             cCCeEEEEEecCCeec
Confidence             457899999998766

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.76  E-value=0.0069  Score=48.73  Aligned_cols=68  Identities=10%  Similarity=0.037  Sum_probs=45.0

Q ss_pred             ccCCCcce-EEEEEEEcCCCcceeeeeeHH-----------HHhhhcC-CCceeeeeeEEEeCCeEEEEEEcCCCCCHHH
Q 042690           31 KPCGGSFS-TVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH-HKNLVCLLGYHIEQECRLLVYKFMHNRSISS   97 (266)
Q Consensus        31 ~ig~G~~g-~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~   97 (266)
                      .+..|..+ .||+.... .++..+.+|+-.           ..++.+. +--+.++++++.+.+..++|||+++|.++.+
T Consensus        31 ~~~~G~S~~~v~rl~~~-~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~  109 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGK-PNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQ  109 (272)
T ss_dssp             EEECSSSSCEEEEEECC-TTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHH
T ss_pred             EccCCCcCCeEEEEEec-CCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccc
Confidence            34445444 68987754 345567777532           3444443 2236678888888899999999999987765


Q ss_pred             HH
Q 042690           98 LL   99 (266)
Q Consensus        98 ~l   99 (266)
                      ..
T Consensus       110 ~~  111 (272)
T 4gkh_A          110 VL  111 (272)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.89  E-value=0.046  Score=42.63  Aligned_cols=133  Identities=13%  Similarity=0.032  Sum_probs=77.8

Q ss_pred             CCHHHHHhhcC-CCCHHHHHHHHH------HHh-----hhcCccc-cceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           93 RSISSLLYECL-RPTWQQRMQDCI------RDC-----WRTRALA-CRILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        93 ~~L~~~l~~~~-~~~~~~~l~~~~------~~~-----~~~~~~h-~nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      -+|.+.+.... .++..+..+.+.      +..     .+..+.. ..++++.+|.+.+.+ ..+.             .
T Consensus        33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~-------------~   98 (229)
T 2yle_A           33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD-------------A   98 (229)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC-C-----------------
T ss_pred             ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc-cccc-------------c
Confidence            47899998544 455444333332      222     1112222 268888888887663 1110             1


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCccccchHHHHHHHhhhc-------------------
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE-------------------  220 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~~~~~~~~~l~~~cl~~-------------------  220 (266)
                      ....+.+||... ...+.+.=|||||+++|..+-...|.  ......++.+-+++..|.+.                   
T Consensus        99 ~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e--~eE~eLS~~LE~LL~~Mt~~~~d~~~~DeG~~~~~eg~~  175 (229)
T 2yle_A           99 GEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKE--NEERELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLG  175 (229)
T ss_dssp             --------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCT--TEEECCCHHHHHHHHHHTTCCC-----------------
T ss_pred             cccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCc--ccchhhCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            133566788653 23456788999999999999765544  33556677777888888755                   


Q ss_pred             ------CCCCCCCHHHHHHHHHHHHhCC
Q 042690          221 ------KPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       221 ------~p~~Rps~~~il~~l~~~~~~~  242 (266)
                            .+..|+++++|++....-...|
T Consensus       176 d~~~~~~~~~~~sl~~Vi~~C~~hl~~p  203 (229)
T 2yle_A          176 DEDEKRKISAIRSYRDVMKLCAAHLPTE  203 (229)
T ss_dssp             ---CCSCCCCCCSHHHHHHHHHTTSSSG
T ss_pred             cccccccccCcCCHHHHHHHHHhhccCc
Confidence                  2457889999988877665544

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.24  E-value=0.2  Score=42.64  Aligned_cols=62  Identities=8%  Similarity=0.044  Sum_probs=38.2

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeH---------------------HHHhhhcCC--C-ceeeeeeEEEeCCeE
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKL---------------------DKVVHVAHH--K-NLVCLLGYHIEQECR   83 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~---------------------~~~l~~~~h--~-~iv~~~~~~~~~~~~   83 (266)
                      ..+.||.|..+.||++... ..+..+++|..                     .+.++.+..  + .+.+++.+  +....
T Consensus        34 ~~~~lg~G~~n~vyrv~~~-~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~  110 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQ-EHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMA  110 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC-----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTT
T ss_pred             EEEECCCCceEEEEEEEEC-CCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCcc
Confidence            4678999999999999753 24567777731                     124444421  3 34455543  34456


Q ss_pred             EEEEEcCCC
Q 042690           84 LLVYKFMHN   92 (266)
Q Consensus        84 ~lv~e~~~~   92 (266)
                      ++|||++.+
T Consensus       111 ~lvmE~l~g  119 (397)
T 2olc_A          111 VTVMEDLSH  119 (397)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEEeCCC
Confidence            799999976

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=93.33  E-value=0.76  Score=39.39  Aligned_cols=61  Identities=10%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeee--------eH-------------HHHh---hhcCCCceeeeeeEEEeCCe
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVK--------KL-------------DKVV---HVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK--------~~-------------~~~l---~~~~h~~iv~~~~~~~~~~~   82 (266)
                      ...+.||.|..+.||++..   ++..+++|        .-             .+.+   ....+..+.+++.+.  .+.
T Consensus        37 ~~i~~l~~G~~n~vyrv~~---~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~  111 (420)
T 2pyw_A           37 LVIKEVGDGNLNFVFIVVG---SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTM  111 (420)
T ss_dssp             CEEEECCCSSSCEEEEEEC---SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTT
T ss_pred             eEEEEccCCCcEEEEEEEc---CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCc
Confidence            3467899999999999963   45678888        11             0111   122234566666664  566


Q ss_pred             EEEEEEcC-CC
Q 042690           83 RLLVYKFM-HN   92 (266)
Q Consensus        83 ~~lv~e~~-~~   92 (266)
                      .++||||+ ++
T Consensus       112 ~~lv~e~l~~g  122 (420)
T 2pyw_A          112 ALIGMRYLEPP  122 (420)
T ss_dssp             TEEEECCCCTT
T ss_pred             cEEEEeecCCc
Confidence            78999999 76

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=93.14  E-value=0.62  Score=38.39  Aligned_cols=87  Identities=11%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC---CCceeeeeeEEEeCCeEEEEEEcC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH---HKNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~---h~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      .....+.|+.|....+|+...   ++..+++|.-.           ..++.+.   ...+.+++.+....+..++||||+
T Consensus        37 ~i~~~~~l~gG~~n~~y~v~~---~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           37 FIKHKEKLYSGEMNEIWLIND---EVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             CCCEEEEECCSSSSEEEEEES---SSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred             ceeeeEEeCCccceeeeEEEE---CCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence            455677899999999999874   45667777532           2344442   356788888888788899999999


Q ss_pred             CCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcC
Q 042690           91 HNRSISSLLYECLRPTWQQRMQDCIRDCWRTR  122 (266)
Q Consensus        91 ~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~  122 (266)
                      ++.++.        ......+...+..+|...
T Consensus       114 ~G~~~~--------~~~~~~lG~~LA~LH~~~  137 (312)
T 3jr1_A          114 NKSKNK--------QSSFTIFAEKIAQLHQIQ  137 (312)
T ss_dssp             CCCCCC--------TTHHHHHHHHHHHHHHCC
T ss_pred             cCCCCC--------chhHHHHHHHHHHHHcCC
Confidence            997642        133455556666666554

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=92.83  E-value=0.57  Score=38.29  Aligned_cols=63  Identities=5%  Similarity=-0.058  Sum_probs=40.1

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeeeH------------HHHhhhcCCC---ceeeeeeEEE-eCCeEEEEEEcCCC
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKKL------------DKVVHVAHHK---NLVCLLGYHI-EQECRLLVYKFMHN   92 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~------------~~~l~~~~h~---~iv~~~~~~~-~~~~~~lv~e~~~~   92 (266)
                      .+.++.|....||+.      +..+++|..            ..+++.+.+.   .+.+++.+.. ..+..++|||+++|
T Consensus        24 v~~l~~G~~n~v~~v------g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV------NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE------TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE------CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            456777888888876      233444432            2466666542   3455666654 34557899999999


Q ss_pred             CCHHH
Q 042690           93 RSISS   97 (266)
Q Consensus        93 ~~L~~   97 (266)
                      .++..
T Consensus        98 ~~l~~  102 (306)
T 3tdw_A           98 QILGE  102 (306)
T ss_dssp             EECHH
T ss_pred             eECch
Confidence            77764

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=92.20  E-value=1.4  Score=36.16  Aligned_cols=66  Identities=12%  Similarity=0.206  Sum_probs=35.6

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhc-----CCCceeeee-e--EEEeCCeEEEEEE
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVA-----HHKNLVCLL-G--YHIEQECRLLVYK   88 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~-----~h~~iv~~~-~--~~~~~~~~~lv~e   88 (266)
                      ...+.|+.|..+.||+....  ++ .+++|+..          .+++.+     ..|.++... +  +....+..+++|+
T Consensus        35 ~~~~~l~gG~~n~~~~v~~~--~~-~~vlk~~~~~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           35 EKIDVIQGNQMALVWKVHTD--SG-AVCLKRIHRPEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             CEEEECC----CEEEEEEET--TE-EEEEEEECSCHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             EEeeeccccccCcEEEEEeC--CC-CEEEEecCCCHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            34567777778899998862  33 47777653          122222     224443311 1  1234677899999


Q ss_pred             cCCCCCH
Q 042690           89 FMHNRSI   95 (266)
Q Consensus        89 ~~~~~~L   95 (266)
                      |++|.++
T Consensus       112 ~i~G~~~  118 (346)
T 2q83_A          112 WIEGRPF  118 (346)
T ss_dssp             CCCCBCC
T ss_pred             eecCccC
Confidence            9998543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=89.93  E-value=0.029  Score=45.98  Aligned_cols=78  Identities=12%  Similarity=-0.040  Sum_probs=43.4

Q ss_pred             hhcCccccceeecC--CCEEEEeecCcceeeccccccccccccCCCCcCCccccC------CCC--------CCcccchh
Q 042690          119 WRTRALACRILLHD--YFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFR------NMP--------VTVKVDVY  182 (266)
Q Consensus       119 ~~~~~~h~nili~~--~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~--------~~~~~Di~  182 (266)
                      .|+++.+.|+++++  .+.+.++||+.+..............  ...-..|+...      +..        .....+.|
T Consensus       194 ~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~--~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~  271 (304)
T 3sg8_A          194 IHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLME--DDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYW  271 (304)
T ss_dssp             ECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCC--TTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHh--hccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence            45555556999998  55678999999876432111110000  00001222111      000        11225789


Q ss_pred             hHHHHHHHHHhCCCcc
Q 042690          183 SFGVMLLEIISCRCVE  198 (266)
Q Consensus       183 slG~i~~~l~tg~~p~  198 (266)
                      +++.++|.+.+|..++
T Consensus       272 ~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          272 SFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCHHH
Confidence            9999999999987655

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=83.83  E-value=2.9  Score=33.56  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCC---ceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHK---NLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~---~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++...+.+|.|..+.||+...  .+++.+.+|+-.              ..|+.+.-.   -+.+++++  +  ..++||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l--~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~   89 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVEL--ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAM   89 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEE--TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEE
T ss_pred             CeEEEEecCCCCCeEEEEEEE--CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEE
Confidence            567788999999999999998  477888888621              245544321   23444443  2  236899


Q ss_pred             EcCCCCCH
Q 042690           88 KFMHNRSI   95 (266)
Q Consensus        88 e~~~~~~L   95 (266)
                      ||.+++..
T Consensus        90 e~l~~~~~   97 (288)
T 3f7w_A           90 EWVDERPP   97 (288)
T ss_dssp             ECCCCCCC
T ss_pred             EeecccCC
Confidence            99987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-26
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-25
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-25
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-24
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-24
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-24
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-24
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-24
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-22
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-21
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-21
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	9e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-21
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-20
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-20
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	7e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-19
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-19
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-19
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-18
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-17
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-17
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-17
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	6e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-17
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	4e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-16
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-16
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-15
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-15
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-15
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	8e-15
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-14
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-13
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-13
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-12
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	3e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-12
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-09
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-09
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	5e-09
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-07
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-07
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-05

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 3e-26
 Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 45/257 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
            +  +  G G F  V+ G     DK  + +K + +             V+    H  LV 
Sbjct: 7   LTFVQEIGSGQFGLVHLGYWLNKDK--VAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQ 64

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSL-LYECLRPTWQQR----------MQDCIRDCWRT 121
           L G  +EQ    LV++FM +  +S     +      +            M      C   
Sbjct: 65  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 124

Query: 122 RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
           R LA R  L+ +   ++ SD G+ + ++ +Q  + TG +    +  PE F     + K D
Sbjct: 125 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 184

Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPP 223
           V+SFGV++ E+ S   +  +      + + +                  I     KE+P 
Sbjct: 185 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPE 244

Query: 224 LRPSLRIVALMLQSILE 240
            RP+   +   L  I E
Sbjct: 245 DRPAFSRLLRQLAEIAE 261

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 52/258 (20%), Positives = 98/258 (37%), Gaps = 48/258 (18%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
            +  K  G G F  V  G      + ++ +K + +             V+    H+ LV 
Sbjct: 6   LTFLKELGTGQFGVVKYGKWR--GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQ 63

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLY-ECLRPTWQQRMQDCIRDCWRTRALACR---- 127
           L G   +Q    ++ ++M N  + + L     R   QQ ++ C   C     L  +    
Sbjct: 64  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLH 123

Query: 128 -------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
                   L++D   V+ SD GL++ ++ ++  +  G +    + PPE       + K D
Sbjct: 124 RDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSD 183

Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPP 223
           +++FGV++ EI S   +  +        + +                  I      EK  
Sbjct: 184 IWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKAD 243

Query: 224 LRPSLRIVALMLQSILEV 241
            RP+ +I+   L +IL+V
Sbjct: 244 ERPTFKIL---LSNILDV 258

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 6e-25
 Identities = 48/291 (16%), Positives = 99/291 (34%), Gaps = 62/291 (21%)

Query: 9   EADPSQYE-NRVFGSFSHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLDK---- 60
           E  PS     +V G+            G F  VY G+L       +  + +K L      
Sbjct: 3   EIHPSCVTRQKVIGA------------GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTE 50

Query: 61  -----------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQ 109
                      ++    H N++ L G   + +  +++ ++M N ++   L E        
Sbjct: 51  KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVL 110

Query: 110 RMQDCIRDCWRTRALACR------------ILLHDYFTVETSDLGLAKLLMINQ--TQTL 155
           ++   +R                       IL++     + SD GL+++L  +   T T 
Sbjct: 111 QLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT 170

Query: 156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM--- 212
           +G +    +  PE       T   DV+SFG+++ E+++             + K +    
Sbjct: 171 SGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGF 230

Query: 213 --------------IAIQFVKEKPPLRPSLRIVALMLQSILEVPSPPCSFA 249
                         + +Q  +++   RP    +  +L  ++  P    + A
Sbjct: 231 RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLA 281

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (242), Expect = 1e-24
 Identities = 47/268 (17%), Positives = 93/268 (34%), Gaps = 59/268 (22%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
            ++ +  G GSF TVY G        ++ VK L+                 V+    H N
Sbjct: 10  ITVGQRIGSGSFGTVYKGKW----HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP-TWQQRMQDCIRDCWRTRALACR- 127
           ++  +GY        +V ++    S+   L+         + +    +       L  + 
Sbjct: 66  ILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS 124

Query: 128 ----------ILLHDYFTVETSDLGLAKLL-MINQTQTLTGMRETKGYLPPEWFRNM--- 173
                     I LH+  TV+  D GLA +    + +     +  +  ++ PE  R     
Sbjct: 125 IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKN 184

Query: 174 PVTVKVDVYSFGVMLLEIISCR--------------CVERQGSDPKTLEKP-------VM 212
           P + + DVY+FG++L E+++ +               V R    P   +           
Sbjct: 185 PYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKR 244

Query: 213 IAIQFVKEKPPLRPSLRIVALMLQSILE 240
           +  + +K+K   RP    +   ++ +  
Sbjct: 245 LMAECLKKKRDERPLFPQILASIELLAR 272

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 2e-24
 Identities = 42/245 (17%), Positives = 80/245 (32%), Gaps = 33/245 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHHKNL 70
           +      G G+   V+     P     +  K +                 V+H  +   +
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLV-MARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66

Query: 71  VCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR--- 127
           V   G         +  + M   S+  +L +  R   Q   +  I        L  +   
Sbjct: 67  VGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKI 126

Query: 128 ---------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
                    IL++    ++  D G++  L+ +   +  G   T+ Y+ PE  +    +V+
Sbjct: 127 MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG---TRSYMSPERLQGTHYSVQ 183

Query: 179 VDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI 238
            D++S G+ L+E+   R       D K LE      ++    + P RP      L    +
Sbjct: 184 SDIWSMGLSLVEMAVGR-YPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGM 242

Query: 239 LEVPS 243
              P 
Sbjct: 243 DSRPP 247

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (240), Expect = 2e-24
 Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 47/263 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
             L+   G G F  V+ G      +  + +K L               V+    H+ LV 
Sbjct: 19  LRLEVKLGQGCFGEVWMGTWNGTTR--VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 76

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLY--ECLRPTWQQRMQDCIRDCWRTRALACR--- 127
           L    + +E   +V ++M   S+   L           Q +    +       +      
Sbjct: 77  LYAV-VSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 135

Query: 128 --------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                   IL+ +    + +D GLA+L+  N+     G +    +  PE       T+K 
Sbjct: 136 HRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKS 195

Query: 180 DVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKP 222
           DV+SFG++L E+ +   V   G   + +   V                  +  Q  +++P
Sbjct: 196 DVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEP 255

Query: 223 PLRPSLRIVALMLQSILEVPSPP 245
             RP+   +   L+       P 
Sbjct: 256 EERPTFEYLQAFLEDYFTSTEPQ 278

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 3e-24
 Identities = 52/256 (20%), Positives = 98/256 (38%), Gaps = 50/256 (19%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLDKVVHVA---------------HHKNLVCLLGYH 77
           G F  VY G L   D   I    K L+++  +                 H N++ LLG  
Sbjct: 38  GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC 97

Query: 78  IEQE-CRLLVYKFMHNRSISSLLY-ECLRPTWQQRMQDCIRDCW----------RTRALA 125
           +  E   L+V  +M +  + + +  E   PT +  +   ++               R LA
Sbjct: 98  LRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA 157

Query: 126 CR-ILLHDYFTVETSDLGLAKLLMINQTQTL---TGMRETKGYLPPEWFRNMPVTVKVDV 181
            R  +L + FTV+ +D GLA+ +   +  ++   TG +    ++  E  +    T K DV
Sbjct: 158 ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDV 217

Query: 182 YSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPPL 224
           +SFGV+L E+++         +   +   ++                 + ++    K  +
Sbjct: 218 WSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEM 277

Query: 225 RPSLRIVALMLQSILE 240
           RPS   +   + +I  
Sbjct: 278 RPSFSELVSRISAIFS 293

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (235), Expect = 8e-24
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 47/257 (18%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
             L +  G G F  V+ G       T + VK L +             ++    H+ LV 
Sbjct: 15  LKLVERLGAGQFGEVWMGYYN--GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLYEC--LRPTWQQRMQDCIRDCWRTRALACR--- 127
           L    + QE   ++ ++M N S+   L     ++ T  + +    +       +  R   
Sbjct: 73  LYAV-VTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI 131

Query: 128 --------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                   IL+ D  + + +D GLA+L+  N+     G +    +  PE       T+K 
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 191

Query: 180 DVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKP 222
           DV+SFG++L EI++   +   G     + + +                  +     KE+P
Sbjct: 192 DVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERP 251

Query: 223 PLRPSLRIVALMLQSIL 239
             RP+   +  +L+   
Sbjct: 252 EDRPTFDYLRSVLEDFF 268

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 45/261 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
            ++K   G G +  VY GV        + VK L +             V+    H NLV 
Sbjct: 19  ITMKHKLGGGQYGEVYEGVW-KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ 77

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLYECLRP--TWQQRMQDCIRDCWRTRALACR--- 127
           LLG    +    ++ +FM   ++   L EC R   +    +    +       L  +   
Sbjct: 78  LLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFI 137

Query: 128 --------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                    L+ +   V+ +D GL++L+  +      G +    +  PE       ++K 
Sbjct: 138 HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 197

Query: 180 DVYSFGVMLLEIISCRCVERQGSDPKTL-----------------EKPVMIAIQFVKEKP 222
           DV++FGV+L EI +       G D   +                 EK   +     +  P
Sbjct: 198 DVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNP 257

Query: 223 PLRPSLRIVALMLQSILEVPS 243
             RPS   +    +++ +  S
Sbjct: 258 SDRPSFAEIHQAFETMFQESS 278

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.4 bits (226), Expect = 3e-22
 Identities = 48/259 (18%), Positives = 91/259 (35%), Gaps = 50/259 (19%)

Query: 35  GSFSTVYTGVLAPGDKTNIGV--KKLDK---------------VVHVAHHKNLVCLLGYH 77
           G F  V +G L    K  I V  K L                 ++    H N++ L G  
Sbjct: 37  GEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVV 96

Query: 78  IEQECRLLVYKFMHNRSISSLLY-ECLRPTWQQR----------MQDCIRDCWRTRALAC 126
            +    +++ +FM N S+ S L     + T  Q           M+      +  R LA 
Sbjct: 97  TKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAA 156

Query: 127 R-ILLHDYFTVETSDLGLAKLLMINQTQ----TLTGMRETKGYLPPEWFRNMPVTVKVDV 181
           R IL++     + SD GL++ L  + +     +  G +    +  PE  +    T   DV
Sbjct: 157 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDV 216

Query: 182 YSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPPL 224
           +S+G+++ E++S           + +   +                  + +   ++    
Sbjct: 217 WSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNH 276

Query: 225 RPSLRIVALMLQSILEVPS 243
           RP    +   L  ++  P+
Sbjct: 277 RPKFGQIVNTLDKMIRNPN 295

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 1e-21
 Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLV 71
           Y+  +  G G+  TVYT +        + +++++               V+    + N+V
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVA-TGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIV 80

Query: 72  CLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCI-----------RDCWR 120
             L  ++  +   +V +++   S++ ++ E       Q    C                 
Sbjct: 81  NYLDSYLVGDELWVVMEYLAGGSLTDVVTET-CMDEGQIAAVCRECLQALEFLHSNQVIH 139

Query: 121 TRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
               +  ILL    +V+ +D G    +   Q++  + M  T  ++ PE         KVD
Sbjct: 140 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKR-STMVGTPYWMAPEVVTRKAYGPKVD 198

Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVALMLQ 236
           ++S G+M +E+I         +  + L          ++    L    R  +   L 
Sbjct: 199 IWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLD 255

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 1e-21
 Identities = 47/251 (18%), Positives = 78/251 (31%), Gaps = 48/251 (19%)

Query: 35  GSFSTVYTGVLA-PGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYH 77
           G+F TV  G          + VK L                  V+    +  +V ++G  
Sbjct: 18  GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGI- 76

Query: 78  IEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIRDCWRTRAL-AC 126
            E E  +LV +      ++  L +      +            M+      +  R L A 
Sbjct: 77  CEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAAR 136

Query: 127 RILLHDYFTVETSDLGLAKLL--MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            +LL      + SD GL+K L    N  +  T  +    +  PE       + K DV+SF
Sbjct: 137 NVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSF 196

Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPPLRPS 227
           GV++ E  S      +G     +   +                  +           RP 
Sbjct: 197 GVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPG 256

Query: 228 LRIVALMLQSI 238
              V L L++ 
Sbjct: 257 FAAVELRLRNY 267

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 3e-21
 Identities = 54/256 (21%), Positives = 84/256 (32%), Gaps = 51/256 (19%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK------------VVHVAHHKNLVCL 73
             L +  G G F  V  G         + VK +              V+    H NLV L
Sbjct: 9   LKLLQTIGKGEFGDVMLGDY---RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQL 65

Query: 74  LGYHIEQECRL-LVYKFMHNRSISSLLYECLRP--TWQQRMQDCIRDCWRTRAL------ 124
           LG  +E++  L +V ++M   S+   L    R        ++  +  C     L      
Sbjct: 66  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFV 125

Query: 125 -----ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKV 179
                A  +L+ +    + SD GL K      + T    +    +  PE  R    + K 
Sbjct: 126 HRDLAARNVLVSEDNVAKVSDFGLTKEA----SSTQDTGKLPVKWTAPEALREKKFSTKS 181

Query: 180 DVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKP 222
           DV+SFG++L EI S   V       K +   V                  +         
Sbjct: 182 DVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDA 241

Query: 223 PLRPSLRIVALMLQSI 238
            +RPS   +   L+ I
Sbjct: 242 AMRPSFLQLREQLEHI 257

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 9e-21
 Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 35/239 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           + + +P G G F  VY        K  + +K L K                 +     H 
Sbjct: 8   FEIGRPLGKGKFGNVYLARE-KQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQ------DCIRDCWRTR 122
           N++ L GY  +     L+ ++    ++   L +  +   Q+         + +  C   R
Sbjct: 67  NILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR 126

Query: 123 AL-----ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
            +        +LL     ++ +D G +     ++  TL G   T  YLPPE         
Sbjct: 127 VIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCG---TLDYLPPEMIEGRMHDE 183

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ 236
           KVD++S GV+  E +  +      +  +T ++   +   F         +  +++ +L+
Sbjct: 184 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTE--GARDLISRLLK 240

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 9e-21
 Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 40/237 (16%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKNLVCLLGYHI 78
           GSF TVY G+        +   +L                  ++    H N+V       
Sbjct: 20  GSFKTVYKGLD-TETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWE 78

Query: 79  E----QECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------- 127
                ++C +LV + M + ++ + L        +     C +     + L  R       
Sbjct: 79  STVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHR 138

Query: 128 ------ILL-HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVD 180
                 I +     +V+  DLGLA L   +  + + G   T  ++ PE +        VD
Sbjct: 139 DLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIG---TPEFMAPEMYEE-KYDESVD 194

Query: 181 VYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVALMLQ 236
           VY+FG+ +LE+ +      +  +   + + V   ++         P ++ I+   ++
Sbjct: 195 VYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIR 251

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 3e-20
 Identities = 41/253 (16%), Positives = 81/253 (32%), Gaps = 48/253 (18%)

Query: 35  GSFSTVYTGVL-APGDKTNIGVKKLDK---------------VVHVAHHKNLVCLLGYHI 78
           G+F +V  GV      + ++ +K L +               ++H   +  +V L+G   
Sbjct: 20  GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGV-C 78

Query: 79  EQECRLLVYKFMHNRSISSLLYECLRP-TWQQR----------MQDCIRDCWRTRALACR 127
           + E  +LV +      +   L                      M+      +  R LA R
Sbjct: 79  QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAAR 138

Query: 128 -ILLHDYFTVETSDLGLAKLLMINQTQ--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
            +LL +    + SD GL+K L  + +     +  +    +  PE       + + DV+S+
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 198

Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVKEKPPLRPS 227
           GV + E +S      +      +   +                  +       K   RP 
Sbjct: 199 GVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPD 258

Query: 228 LRIVALMLQSILE 240
              V   +++   
Sbjct: 259 FLTVEQRMRACYY 271

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 4e-20
 Identities = 44/276 (15%), Positives = 89/276 (32%), Gaps = 64/276 (23%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAP-GDKTNIGVKKLDKVV----------------HVAHHK 68
              +   G G+F  V    +   G + +  +K++ +                   + HH 
Sbjct: 12  IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHP 71

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYE----CLRPTWQQRMQDCIRDCWRTRAL 124
           N++ LLG    +    L  ++  + ++   L +       P +            +    
Sbjct: 72  NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH 131

Query: 125 ACR-----------------------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET 161
                                     IL+ + +  + +D GL++   +   +T+  +   
Sbjct: 132 FAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRL--P 189

Query: 162 KGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM--------- 212
             ++  E       T   DV+S+GV+L EI+S       G     L + +          
Sbjct: 190 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL 249

Query: 213 --------IAIQFVKEKPPLRPSLRIVALMLQSILE 240
                   +  Q  +EKP  RPS   + + L  +LE
Sbjct: 250 NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (208), Expect = 7e-20
 Identities = 40/261 (15%), Positives = 77/261 (29%), Gaps = 48/261 (18%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGV--KKLDK---------------VVHVAHHK 68
             L +  G G F  V+ G+    +   + V  K                    +    H 
Sbjct: 9   IELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHP 68

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP-TWQQRMQDCIRDCWRTRALACR 127
           ++V L+G  I +    ++ +      + S L            +    +       L  +
Sbjct: 69  HIVKLIGV-ITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK 127

Query: 128 -----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVT 176
                      +L+     V+  D GL++ +  +     +  +    ++ PE       T
Sbjct: 128 RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFT 187

Query: 177 VKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFVK 219
              DV+ FGV + EI+       QG     +   +                  +  +   
Sbjct: 188 SASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWA 247

Query: 220 EKPPLRPSLRIVALMLQSILE 240
             P  RP    +   L +ILE
Sbjct: 248 YDPSRRPRFTELKAQLSTILE 268

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 2e-19
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 31/240 (12%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAHHKNL 70
           + L +  G G++  V   V     +  + VK +D                +  + +H+N+
Sbjct: 7   WDLVQTLGEGAYGEVQLAVN-RVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV 65

Query: 71  VCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIRDCWR 120
           V   G+  E   + L  ++     +   +   +                 +         
Sbjct: 66  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGIT 125

Query: 121 TRALACR-ILLHDYFTVETSDLGLAKLLMIN-QTQTLTGMRETKGYLPPEWFRNMPV-TV 177
            R +    +LL +   ++ SD GLA +   N + + L  M  T  Y+ PE  +       
Sbjct: 126 HRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAE 185

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVALMLQ 236
            VDV+S G++L  +++      Q SD             ++     +  +   ++  +L 
Sbjct: 186 PVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILV 245

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 31/227 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           +   K  G GSFSTV              +K L+K                 V+    H 
Sbjct: 10  FKFGKILGEGSFSTVVLARE-LATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR- 127
             V L     + E       +  N  +   + +                      L  + 
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 128

Query: 128 ----------ILLHDYFTVETSDLGLAKLLMINQTQT-LTGMRETKGYLPPEWFRNMPVT 176
                     ILL++   ++ +D G AK+L     Q        T  Y+ PE        
Sbjct: 129 IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSAC 188

Query: 177 VKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
              D+++ G ++ ++++     R G++    +K + +   F ++  P
Sbjct: 189 KSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFP 235

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.6 bits (203), Expect = 4e-19
 Identities = 51/287 (17%), Positives = 90/287 (31%), Gaps = 73/287 (25%)

Query: 27  YSLKKPCG-GSFSTVY----TGVLAPGDKTNIGVKKLDK---------------VVHVAH 66
               +  G G+F  V+     G+L     T + VK L +               ++    
Sbjct: 15  IEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD 74

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT----- 121
           + N+V LLG     +   L++++M    ++  L      T        +    R      
Sbjct: 75  NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP 134

Query: 122 -----------------------------RALACR-ILLHDYFTVETSDLGLAKLLMINQ 151
                                        R LA R  L+ +   V+ +D GL++ +    
Sbjct: 135 PPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSAD 194

Query: 152 TQTLTGMRE-TKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKP 210
                G       ++PPE       T + DV+++GV+L EI S       G   + +   
Sbjct: 195 YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYY 254

Query: 211 VM-----------------IAIQFVKEKPPLRPSLRIVALMLQSILE 240
           V                  +      + P  RPS   +  +LQ + E
Sbjct: 255 VRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE 301

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 6e-19
 Identities = 46/265 (17%), Positives = 87/265 (32%), Gaps = 48/265 (18%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTN---IGVKKLDK---------------VVHVAHH 67
           +   K  G G+F TVY G+  P  +     + +K+L +               V+    +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIRD 117
            ++  LLG  +    +L+         +  +         Q            M      
Sbjct: 71  PHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR 130

Query: 118 CWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPV 175
               R LA R +L+     V+ +D GLAKLL   + +    G +    ++  E   +   
Sbjct: 131 RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY 190

Query: 176 TVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM-----------------IAIQFV 218
           T + DV+S+GV + E+++       G     +   +                  I ++  
Sbjct: 191 THQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCW 250

Query: 219 KEKPPLRPSLRIVALMLQSILEVPS 243
                 RP  R + +    +   P 
Sbjct: 251 MIDADSRPKFRELIIEFSKMARDPQ 275

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.2 bits (200), Expect = 1e-18
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 35/246 (14%)

Query: 23  FSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK---------------VVHVAH 66
              IY  +   G G+FS V         K  + +K + K               V+H   
Sbjct: 7   IRDIYDFRDVLGTGAFSEVILAEDKRTQKL-VAIKCIAKKALEGKEGSMENEIAVLHKIK 65

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIR 116
           H N+V L   +       L+ + +    +   + E    T +            ++    
Sbjct: 66  HPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD 125

Query: 117 DCWRTRALACR----ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRN 172
                R L         L +   +  SD GL+K+   +    L+    T GY+ PE    
Sbjct: 126 LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM--EDPGSVLSTACGTPGYVAPEVLAQ 183

Query: 173 MPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP-LRPSLR-I 230
            P +  VD +S GV+   ++         +D K  E+ +    +F       +  S +  
Sbjct: 184 KPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDF 243

Query: 231 VALMLQ 236
           +  +++
Sbjct: 244 IRHLME 249

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 2e-18
 Identities = 45/286 (15%), Positives = 86/286 (30%), Gaps = 69/286 (24%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIG----VKKLDK----------------VVHVA 65
            S  K  G G+F  V         K++      VK L                  + ++ 
Sbjct: 25  LSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG 84

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLL------YECLRPTWQQRMQDCIRDCW 119
           +H N+V LLG        L++ ++     + + L      + C + +      D +    
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 120 RTRALACR-----------------------ILLHDYFTVETSDLGLAKLLMINQTQTLT 156
                                          ILL      +  D GLA+ +  +    + 
Sbjct: 145 EDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVK 204

Query: 157 GM-RETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM--- 212
           G  R    ++ PE   N   T + DV+S+G+ L E+ S       G    +    ++   
Sbjct: 205 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG 264

Query: 213 ---------------IAIQFVKEKPPLRPSLRIVALMLQSILEVPS 243
                          I        P  RP+ + +  +++  +   +
Sbjct: 265 FRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISEST 310

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 5e-18
 Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 44/250 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y +    G GS+           D   +  K+LD                 ++    H N
Sbjct: 6   YEVLYTIGTGSYGRCQKIRR-KSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 70  LVCLLGYHIEQECRLL--VYKFMHNRSISSLLYECLRP----TWQQRMQ------DCIRD 117
           +V      I++    L  V ++     ++S++ +  +       +  ++        +++
Sbjct: 65  IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE 124

Query: 118 CWRTRALACRI----------LLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPP 167
           C R       +           L     V+  D GLA++L  + +        T  Y+ P
Sbjct: 125 CHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA-KAFVGTPYYMSP 183

Query: 168 EWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPS 227
           E    M    K D++S G +L E+ +        S  +   K  +   +F +        
Sbjct: 184 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGK--IREGKFRRIPYRYSDE 241

Query: 228 LR-IVALMLQ 236
           L  I+  ML 
Sbjct: 242 LNEIITRMLN 251

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-17
 Identities = 45/287 (15%), Positives = 83/287 (28%), Gaps = 74/287 (25%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIG----VKKLDKVV----------------HVA 65
               K  G G+F  V         KT +     VK L +                   + 
Sbjct: 39  LEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLG 98

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDC------- 118
            H+N+V LLG         L++++     + + L        +  ++   +         
Sbjct: 99  SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 158

Query: 119 ----WRTRALACR-----------------------ILLHDYFTVETSDLGLAKLLMINQ 151
               +                               +L+     V+  D GLA+ +M + 
Sbjct: 159 NVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 218

Query: 152 TQTL-TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRC-----------VER 199
              +    R    ++ PE       T+K DV+S+G++L EI S                +
Sbjct: 219 NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYK 278

Query: 200 QGSDPKTLEKP-------VMIAIQFVKEKPPLRPSLRIVALMLQSIL 239
              +   +++P        +I           RPS   +   L   L
Sbjct: 279 LIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQL 325

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.5 bits (193), Expect = 1e-17
 Identities = 42/258 (16%), Positives = 74/258 (28%), Gaps = 38/258 (14%)

Query: 11  DPSQYENRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------- 60
           DP   E         ++S  +  G GSF  VY        +  + +KK+           
Sbjct: 1   DPDVAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEV-VAIKKMSYSGKQSNEKW 59

Query: 61  --------VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQ 112
                    +    H N +   G ++ +    LV ++    +   L          +   
Sbjct: 60  QDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA 119

Query: 113 DCI-----------RDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRET 161
                          +       A  ILL +   V+  D G A +  +    +  G   T
Sbjct: 120 VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASI--MAPANSFVG---T 174

Query: 162 KGYLPPEWFRNM---PVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFV 218
             ++ PE    M       KVDV+S G+  +E+   +      +    L          +
Sbjct: 175 PYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL 234

Query: 219 KEKPPLRPSLRIVALMLQ 236
           +           V   LQ
Sbjct: 235 QSGHWSEYFRNFVDSCLQ 252

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 2e-17
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 33/240 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
           Y + +  G G F  V+  V     KT    K +               ++++A H+N++ 
Sbjct: 7   YMIAEDLGRGEFGIVHRCVETSSKKT-YMAKFVKVKGTDQVLVKKEISILNIARHRNILH 65

Query: 73  LLGYHIEQECRLLVYKFMHNRSISSLLYE-CLRPTWQQRMQDCIRDCWRTRALACRILLH 131
           L       E  +++++F+    I   +         ++ +    + C   + L    + H
Sbjct: 66  LHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGH 125

Query: 132 -------------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
                           T++  + G A+ L       L        Y  PE  ++  V+  
Sbjct: 126 FDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFT--APEYYAPEVHQHDVVSTA 183

Query: 179 VDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP-LRPSLR-IVALMLQ 236
            D++S G ++  ++S        ++ + +E  +     F +E    +       V  +L 
Sbjct: 184 TDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLV 243

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 3e-17
 Identities = 38/243 (15%), Positives = 80/243 (32%), Gaps = 35/243 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLV 71
           + +    G G+F  VY              K +D               ++    H N+V
Sbjct: 14  WEIIGELGDGAFGKVYKAQN-KETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIV 72

Query: 72  CLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRT---------- 121
            LL     +    ++ +F    ++ +++ E  RP  + ++Q   +               
Sbjct: 73  KLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKII 132

Query: 122 -RALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWF-----RNMP 174
            R L    IL      ++ +D G++        Q       T  ++ PE       ++ P
Sbjct: 133 HRDLKAGNILFTLDGDIKLADFGVSAKNT-RTIQRRDSFIGTPYWMAPEVVMCETSKDRP 191

Query: 175 VTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVAL 233
              K DV+S G+ L+E+        + +  + L K        + +      + +  +  
Sbjct: 192 YDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKK 251

Query: 234 MLQ 236
            L+
Sbjct: 252 CLE 254

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 6e-17
 Identities = 46/244 (18%), Positives = 74/244 (30%), Gaps = 38/244 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------------VVHVA 65
           +S+ +  G G F  VY             +K LDK                    +V   
Sbjct: 6   FSVHRIIGRGGFGEVYGCRK-ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRAL- 124
               +VC+       +    +   M+   +   L +    +                 + 
Sbjct: 65  DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH 124

Query: 125 ----------ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWF-RNM 173
                        ILL ++  V  SDLGLA      +     G   T GY+ PE   + +
Sbjct: 125 NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVG---THGYMAPEVLQKGV 181

Query: 174 PVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVA 232
                 D +S G ML +++      RQ       E   M     V+      P LR ++ 
Sbjct: 182 AYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLE 241

Query: 233 LMLQ 236
            +LQ
Sbjct: 242 GLLQ 245

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 7e-17
 Identities = 44/264 (16%), Positives = 78/264 (29%), Gaps = 53/264 (20%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAP--GDKTNIGVKKLDK-----------------VVHVAH 66
             L +  G GSF  V  G      G   ++ VK L                    +H   
Sbjct: 10  LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 69

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC 126
           H+NL+ L G  +    ++ V +     S+   L +         +               
Sbjct: 70  HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE 128

Query: 127 R------------ILLHDYFTVETSDLGLAKLLMINQTQTL--TGMRETKGYLPPEWFRN 172
                        +LL     V+  D GL + L  N    +     +    +  PE  + 
Sbjct: 129 SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKT 188

Query: 173 MPVTVKVDVYSFGVMLLEIISC-----------RCVERQGSDPKTLEKP-------VMIA 214
              +   D + FGV L E+ +            + + +   + + L +P         + 
Sbjct: 189 RTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVM 248

Query: 215 IQFVKEKPPLRPSLRIVALMLQSI 238
           +Q    KP  RP+   +   L   
Sbjct: 249 VQCWAHKPEDRPTFVALRDFLLEA 272

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 75.1 bits (184), Expect = 3e-16
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 34/241 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVAHHKNLV 71
           Y + +  G G+F  V+          N   K +                 + V  H  LV
Sbjct: 28  YDIHEELGTGAFGVVHRVTE-RATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLV 86

Query: 72  CLLGYHIEQECRLLVYKFMHNRSISSLLYECLRP-TWQQR----------MQDCIRDCWR 120
            L     +    +++Y+FM    +   + +     +  +           +     + + 
Sbjct: 87  NLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYV 146

Query: 121 TRALACRILL---HDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
              L    ++        ++  D GL     ++  Q++     T  +  PE     PV  
Sbjct: 147 HLDLKPENIMFTTKRSNELKLIDFGLTA--HLDPKQSVKVTTGTAEFAAPEVAEGKPVGY 204

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP-LRPSLR-IVALML 235
             D++S GV+   ++S        +D +TL                 +    +  +  +L
Sbjct: 205 YTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLL 264

Query: 236 Q 236
            
Sbjct: 265 L 265

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 74.7 bits (183), Expect = 4e-16
 Identities = 40/250 (16%), Positives = 83/250 (33%), Gaps = 40/250 (16%)

Query: 21  GSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------VVHVA 65
           GS    Y + +  G G+F  V+  V           K ++               +++  
Sbjct: 25  GSVYDYYDILEELGSGAFGVVHRCVE-KATGRVFVAKFINTPYPLDKYTVKNEISIMNQL 83

Query: 66  HHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLY-ECLRPTWQQRMQDCI--------- 115
           HH  L+ L     ++   +L+ +F+    +   +  E  + +  + +             
Sbjct: 84  HHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHM 143

Query: 116 -------RDCWRTRALACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE 168
                   D      +          +V+  D GLA  L  N  + +     T  +  PE
Sbjct: 144 HEHSIVHLDIKPENIM---CETKKASSVKIIDFGLATKL--NPDEIVKVTTATAEFAAPE 198

Query: 169 WFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP-LRPS 227
                PV    D+++ GV+   ++S         D +TL+       +F ++    + P 
Sbjct: 199 IVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPE 258

Query: 228 LR-IVALMLQ 236
            +  +  +LQ
Sbjct: 259 AKDFIKNLLQ 268

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 4e-16
 Identities = 36/253 (14%), Positives = 75/253 (29%), Gaps = 41/253 (16%)

Query: 22  SFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------------- 60
           +    Y   +  G G F+ V               K + K                    
Sbjct: 7   NVDDYYDTGEELGSGQFAVVKKCRE-KSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65

Query: 61  VVHVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR---------- 110
           ++    H N++ L   +  +   +L+ + +    +   L E    T ++           
Sbjct: 66  ILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNG 125

Query: 111 MQDCIRDCWRTRALACRILLHDYFTVET-----SDLGLAKLLMINQTQTLTGMRETKGYL 165
           +            L    ++     V        D GLA    I+       +  T  ++
Sbjct: 126 VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPEFV 183

Query: 166 PPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLR 225
            PE     P+ ++ D++S GV+   ++S        +  +TL     +  +F  E     
Sbjct: 184 APEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNT 243

Query: 226 PSL--RIVALMLQ 236
            +L    +  +L 
Sbjct: 244 SALAKDFIRRLLV 256

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 5e-16
 Identities = 37/227 (16%), Positives = 69/227 (30%), Gaps = 32/227 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHH 67
           + L K  G GSF  V+             +K L K                  +     H
Sbjct: 4   FILHKMLGKGSFGKVFLAEF-KKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 68  KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR 127
             L  +      +E    V ++++   +   +  C +    +            + L  +
Sbjct: 63  PFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK 122

Query: 128 -----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVT 176
                      ILL     ++ +D G+ K  M+   +T      T  Y+ PE        
Sbjct: 123 GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKT-NTFCGTPDYIAPEILLGQKYN 181

Query: 177 VKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
             VD +SFGV+L E++  +       + +      M    + +    
Sbjct: 182 HSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEK 228

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.2 bits (179), Expect = 8e-16
 Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 38/247 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           Y L +  G G  S V+          ++ VK L                        +H 
Sbjct: 9   YELGEILGFGGMSEVHLARD-LRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 67

Query: 69  NLVCLLGYHIEQE----CRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDC 114
            +V +      +        +V +++   ++  +++     T ++           +   
Sbjct: 68  AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFS 127

Query: 115 IRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLM--INQTQTLTGMRETKGYLPPEWFR 171
            ++    R +    I++     V+  D G+A+ +    N       +  T  YL PE  R
Sbjct: 128 HQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR 187

Query: 172 NMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP-LRPSLR- 229
              V  + DVYS G +L E+++        S      + V         +   L   L  
Sbjct: 188 GDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDA 247

Query: 230 IVALMLQ 236
           +V   L 
Sbjct: 248 VVLKALA 254

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-15
 Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 30/232 (12%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           +   +  G G++  VY           + +KK+                  ++   +H N
Sbjct: 4   FQKVEKIGEGTYGVVYKARN-KLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR-- 127
           +V LL     +    LV++F+H      +    L       ++  +    +  A      
Sbjct: 63  IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR 122

Query: 128 ----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
                     +L++    ++ +D GLA+   +        +       P         + 
Sbjct: 123 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYST 182

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
            VD++S G +  E+++ R +    S+   L +         +   P   S+ 
Sbjct: 183 AVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP 234

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 4e-15
 Identities = 40/254 (15%), Positives = 75/254 (29%), Gaps = 56/254 (22%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
             L++  G G F  V+ G         + VK                    +  H+N++ 
Sbjct: 5   IVLQESIGKGRFGEVWRGKW---RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILG 61

Query: 73  LLGYHIEQE----CRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR- 127
            +    +         LV  +  + S+   L      T +  ++  +        L    
Sbjct: 62  FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEI 120

Query: 128 ------------------ILLHDYFTVETSDLGLAKLLMINQTQT---LTGMRETKGYLP 166
                             IL+    T   +DLGLA                   TK Y+ 
Sbjct: 121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA 180

Query: 167 PEWF------RNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPK------TLEKPVMIA 214
           PE        ++     + D+Y+ G++  EI     +     D +          P +  
Sbjct: 181 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE 240

Query: 215 IQFVKEKPPLRPSL 228
           ++ V  +  LRP++
Sbjct: 241 MRKVVCEQKLRPNI 254

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (173), Expect = 8e-15
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 38/240 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           + + +  G GSF  V+       +     +K L K                 ++ +  H 
Sbjct: 6   FQILRTLGTGSFGRVHLIRS-RHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHP 64

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR- 127
            ++ + G   + +   ++  ++    + SLL +  R             C     L  + 
Sbjct: 65  FIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD 124

Query: 128 ----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
                     ILL     ++ +D G AK +  + T TL G      Y+ PE     P   
Sbjct: 125 IIYRDLKPENILLDKNGHIKITDFGFAKYVP-DVTYTLCGTP---DYIAPEVVSTKPYNK 180

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR-IVALMLQ 236
            +D +SFG+++ E+++        +  KT EK +   ++F    P     ++ +++ ++ 
Sbjct: 181 SIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRF---PPFFNEDVKDLLSRLIT 237

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 8e-15
 Identities = 50/273 (18%), Positives = 95/273 (34%), Gaps = 59/273 (21%)

Query: 27  YSLKKPCG-GSFSTVYTGVL----APGDKTNIGVKKLDK---------------VVHVAH 66
            ++ +  G GSF  VY GV         +T + +K +++               V+   +
Sbjct: 22  ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFN 81

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLR----------PTWQQRMQDCIR 116
             ++V LLG   + +  L++ + M    + S L               P+  + +Q    
Sbjct: 82  CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 141

Query: 117 DCWRTRALACRILLH-----------DYFTVETSDLGLAKLLMINQTQTLTG-MRETKGY 164
                  L     +H           + FTV+  D G+ + +         G       +
Sbjct: 142 IADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRW 201

Query: 165 LPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM------------ 212
           + PE  ++   T   DV+SFGV+L EI +      QG   + + + VM            
Sbjct: 202 MSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCP 261

Query: 213 -----IAIQFVKEKPPLRPSLRIVALMLQSILE 240
                +     +  P +RPS   +   ++  +E
Sbjct: 262 DMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 294

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 1e-14
 Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 68/285 (23%)

Query: 27  YSLKKPCG-GSFSTVY------TGVLAPGDKTNIGVKKLDK----------------VVH 63
             L KP G G+F  V            P   T + VK L                  +  
Sbjct: 15  LVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKM 74

Query: 64  VAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDC----W 119
           +  HKN++ LLG   +     ++ ++    ++   L     P  +               
Sbjct: 75  IGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSS 134

Query: 120 RTRALACR-----------------------ILLHDYFTVETSDLGLAKLLMINQTQTLT 156
           +                              +L+ +   ++ +D GLA+ +        T
Sbjct: 135 KDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 194

Query: 157 -GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVM--- 212
              R    ++ PE   +   T + DV+SFGV+L EI +       G   + L K +    
Sbjct: 195 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH 254

Query: 213 --------------IAIQFVKEKPPLRPSLRIVALMLQSILEVPS 243
                         +        P  RP+ + +   L  I+ + S
Sbjct: 255 RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 299

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 61/285 (21%), Positives = 99/285 (34%), Gaps = 68/285 (23%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIG----VKKLDK----------------VVHVA 65
             L KP G G+F  V        DKT       VK L +                ++H+ 
Sbjct: 15  LKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIG 74

Query: 66  HHKNLVCLLGYHIEQECRL-LVYKFMHNRSISSLLYECLRP----------------TWQ 108
           HH N+V LLG   +    L ++ +F    ++S+ L                      T +
Sbjct: 75  HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLE 134

Query: 109 QR----------MQDCIRDCWRTRALACR-ILLHDYFTVETSDLGLAKLLMINQTQTLTG 157
                       M+         R LA R ILL +   V+  D GLA+ +  +      G
Sbjct: 135 HLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKG 194

Query: 158 -MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRC-----------VERQGSDPK 205
             R    ++ PE   +   T++ DV+SFGV+L EI S                R+  +  
Sbjct: 195 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT 254

Query: 206 TLEKP-------VMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS 243
            +  P           +     +P  RP+   +   L ++L+  +
Sbjct: 255 RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 299

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 68.7 bits (167), Expect = 3e-14
 Identities = 30/250 (12%), Positives = 67/250 (26%), Gaps = 39/250 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK------------VVHVAHHKNLVCL 73
           Y + +  G GSF  ++ G     +   + +K   +               +      +  
Sbjct: 7   YKVGRRIGEGSFGVIFEGTN-LLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPN 65

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR------ 127
           + Y  ++    ++   +   S+  LL  C R    + +    +                 
Sbjct: 66  VYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYR 125

Query: 128 ------ILLHDYFT-----VETSDLGLAKLLMINQTQTLTGMRE------TKGYLPPEWF 170
                  L+    +     +   D G+ K      T+     RE      T  Y+     
Sbjct: 126 DIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH 185

Query: 171 RNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRI 230
                + + D+ + G + +  +      +        +K     I   K+  PLR     
Sbjct: 186 LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQK--YERIGEKKQSTPLRELCAG 243

Query: 231 VALMLQSILE 240
                   + 
Sbjct: 244 FPEEFYKYMH 253

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 67.4 bits (164), Expect = 9e-14
 Identities = 45/258 (17%), Positives = 82/258 (31%), Gaps = 47/258 (18%)

Query: 23  FSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVV------------------- 62
           F   Y  K+  G G  S V   +  P       VK +D                      
Sbjct: 1   FYENYEPKEILGRGVSSVVRRCIHKP-TCKEYAVKIIDVTGGGSFSAEEVQELREATLKE 59

Query: 63  -----HVAHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR------- 110
                 V+ H N++ L   +       LV+  M    +   L E +  + ++        
Sbjct: 60  VDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRAL 119

Query: 111 ---MQDCIRDCWRTRAL-ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLP 166
              +    +     R L    ILL D   ++ +D G +  L  +  + L  +  T  YL 
Sbjct: 120 LEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL--DPGEKLREVCGTPSYLA 177

Query: 167 PEWFRNMPV------TVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKE 220
           PE               +VD++S GV++  +++             L   +    QF   
Sbjct: 178 PEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSP 237

Query: 221 KPP-LRPSLR-IVALMLQ 236
           +      +++ +V+  L 
Sbjct: 238 EWDDYSDTVKDLVSRFLV 255

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 1e-13
 Identities = 45/226 (19%), Positives = 76/226 (33%), Gaps = 33/226 (14%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDK-------------------VVHVAHHKNLVCLLG 75
           G F+TVY           + +KK+                     ++    H N++ LL 
Sbjct: 9   GQFATVYKARD-KNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLD 67

Query: 76  YHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIRDCWRTRAL- 124
               +    LV+ FM       +    L  T              ++   +     R L 
Sbjct: 68  AFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK 127

Query: 125 ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE-WFRNMPVTVKVDVYS 183
              +LL +   ++ +D GLAK    +  +  T    T+ Y  PE  F      V VD+++
Sbjct: 128 PNNLLLDENGVLKLADFGLAKSFG-SPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWA 186

Query: 184 FGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
            G +L E++         SD   L +         +E+ P   SL 
Sbjct: 187 VGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLP 232

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.6 bits (159), Expect = 4e-13
 Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 37/248 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCL 73
           Y L +  G GSF  +Y G      +  + +K               K+  +      +  
Sbjct: 9   YRLGRKIGSGSFGDIYLGTDIAAGEE-VAIKLECVKTKHPQLHIESKIYKMMQGGVGIPT 67

Query: 74  LGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDC-----------WRTR 122
           + +   +    ++   +   S+  L   C R    + +                  +  R
Sbjct: 68  IRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHR 127

Query: 123 ALACRILLHD----YFTVETSDLGLAKLLMINQTQT------LTGMRETKGYLPPEWFRN 172
            +     L         V   D GLAK     +T           +  T  Y        
Sbjct: 128 DVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLG 187

Query: 173 MPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVA 232
           +  + + D+ S G +L+         +        +K     I   K   P+    +   
Sbjct: 188 IEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK--YERISEKKMSTPIEVLCKGYP 245

Query: 233 LMLQSILE 240
               + L 
Sbjct: 246 SEFATYLN 253

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 65.3 bits (158), Expect = 5e-13
 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 30/244 (12%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y   +  G G++  VY      G+     +KK+                  ++    H N
Sbjct: 4   YHGLEKIGEGTYGVVYKAQNNYGET--FALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRAL----- 124
           +V L      ++  +LV++ +       L                ++             
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV 121

Query: 125 ------ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
                    +L++    ++ +D GLA+   I   +    +       P     +   +  
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTT 181

Query: 179 VDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSI 238
           +D++S G +  E+++   +    S+   L +   I      +  P    L          
Sbjct: 182 IDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVY 241

Query: 239 LEVP 242
             +P
Sbjct: 242 EPLP 245

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 2e-12
 Identities = 41/239 (17%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           +   K  G G+F  V              +K L K                 V+    H 
Sbjct: 7   FDYLKLLGKGTFGKVILVRE-KATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIR-----DCWRTRA 123
            L  L       +    V ++ +   +   L      T ++            +   +R 
Sbjct: 66  FLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD 125

Query: 124 LACR------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
           +  R      ++L     ++ +D GL K  + +   T+     T  YL PE   +     
Sbjct: 126 VVYRDIKLENLMLDKDGHIKITDFGLCKEGI-SDGATMKTFCGTPEYLAPEVLEDNDYGR 184

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQ 236
            VD +  GV++ E++  R         +  E  +M  I+F +   P   +  ++A +L+
Sbjct: 185 AVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSP--EAKSLLAGLLK 241

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-12
 Identities = 43/256 (16%), Positives = 74/256 (28%), Gaps = 44/256 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAH 66
           Y      G G++  V+           + +K++                    + +    
Sbjct: 9   YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFE 68

Query: 67  HKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRM-QDCIRDCWRTRALA 125
           H N+V L                +    +   L   L    +  +  + I+D        
Sbjct: 69  HPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRG 128

Query: 126 CR----------------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEW 169
                             IL+     ++ +D GLA++       T   +  T  Y  PE 
Sbjct: 129 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALT--SVVVTLWYRAPEV 186

Query: 170 FRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLR 229
                    VD++S G +  E+   + + R  SD   L K     I  V   P      R
Sbjct: 187 LLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGK-----ILDVIGLPGEEDWPR 241

Query: 230 IVALMLQSILEVPSPP 245
            VAL  Q+     + P
Sbjct: 242 DVALPRQAFHSKSAQP 257

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 4e-12
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 43/250 (17%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTN--IGVKKLDKVV-------------------HV 64
           + L K  G G++  V+      G  T     +K L K                     H+
Sbjct: 26  FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 85

Query: 65  AHHKNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRAL 124
                LV L      +    L+  +++   + + L +  R T  +              L
Sbjct: 86  RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHL 145

Query: 125 ACR-----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNM 173
                         ILL     V  +D GL+K  + ++T+       T  Y+ P+  R  
Sbjct: 146 HKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGG 205

Query: 174 P--VTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSL--- 228
                  VD +S GV++ E+++         +  +  +   I+ + +K +PP    +   
Sbjct: 206 DSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAE---ISRRILKSEPPYPQEMSAL 262

Query: 229 --RIVALMLQ 236
              ++  +L 
Sbjct: 263 AKDLIQRLLM 272

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 5e-12
 Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 41/206 (19%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVVHV--------------------- 64
           Y +    G G F +VY+G+    D   + +K ++K                         
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVS-DNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 65  -AHHKNLVCLLGYHIEQECRLLVYKFMHNRS-ISSLLYECLRPTWQQRMQDCIRDCWRTR 122
            +    ++ LL +    +  +L+ +       +   + E      +       +     R
Sbjct: 65  SSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVR 124

Query: 123 ALACRILLH------------DYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWF 170
                 +LH            +   ++  D G   LL         G   T+ Y PPEW 
Sbjct: 125 HCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDG---TRVYSPPEWI 181

Query: 171 RNMPV-TVKVDVYSFGVMLLEIISCR 195
           R          V+S G++L +++   
Sbjct: 182 RYHRYHGRSAAVWSLGILLYDMVCGD 207

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 8e-12
 Identities = 43/251 (17%), Positives = 83/251 (33%), Gaps = 34/251 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVVHVA---------------HHKNL 70
           Y+     G G++  V +      +K  + +KK+    H                  H+N+
Sbjct: 10  YTNLSYIGEGAYGMVCSAYD-NVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENI 68

Query: 71  VCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC---- 126
           + +           +   ++    + + LY+ L+         C       R L      
Sbjct: 69  IGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA 128

Query: 127 ----------RILLHDYFTVETSDLGLAKLLMINQTQ--TLTGMRETKGYLPPEWFRN-M 173
                      +LL+    ++  D GLA++   +      LT    T+ Y  PE   N  
Sbjct: 129 NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSK 188

Query: 174 PVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL 233
             T  +D++S G +L E++S R +         L   + I     +E      +L+    
Sbjct: 189 GYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNY 248

Query: 234 MLQSILEVPSP 244
           +L    +   P
Sbjct: 249 LLSLPHKNKVP 259

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-10
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 34/226 (15%)

Query: 35  GSFSTVYTGVLAPGDKTNIGVKKLDKV----------VHVAHHKNLVCLLGY----HIEQ 80
           G    V         +    +K L                +   ++V ++      +  +
Sbjct: 23  GINGKVLQIFN-KRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGR 81

Query: 81  ECRLLVYKFMHNRSISSLLYECLRPTWQQR------------MQDCIRDCWRTRALACR- 127
           +C L+V + +    + S + +     + +R            +Q         R +    
Sbjct: 82  KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPEN 141

Query: 128 ILLHDYF---TVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSF 184
           +L         ++ +D G AK        +LT    T  Y+ PE           D++S 
Sbjct: 142 LLYTSKRPNAILKLTDFGFAK--ETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSL 199

Query: 185 GVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRPSLRI 230
           GV++  ++ C       +    +   +   I+  + + P      +
Sbjct: 200 GVIMYILL-CGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEV 244

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (140), Expect = 2e-10
 Identities = 40/226 (17%), Positives = 71/226 (31%), Gaps = 34/226 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-----------------VVHVAHHK 68
           +   K  G GSF  V           +  +K LDK                 ++   +  
Sbjct: 43  FDRIKTLGTGSFGRVMLVKHKE-SGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 69  NLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACR- 127
            LV L     +     +V +++    + S L    R +         +       L    
Sbjct: 102 FLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD 161

Query: 128 ----------ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTV 177
                     +L+     ++ +D G AK  +  +T TL G  E    L PE   +     
Sbjct: 162 LIYRDLKPENLLIDQQGYIQVTDFGFAKR-VKGRTWTLCGTPE---ALAPEIILSKGYNK 217

Query: 178 KVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
            VD ++ GV++ E+ +           +  EK V   ++F      
Sbjct: 218 AVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSS 263

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 1e-09
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 28/203 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDKVV------------HVAHHKNLVCL 73
           Y L +  G G +S V+  +    ++  + VK L  V             ++    N++ L
Sbjct: 37  YQLVRKLGRGKYSEVFEAINITNNEK-VVVKILKPVKKKKIKREIKILENLRGGPNIITL 95

Query: 74  LGYHIEQECRL--LVYKFMHNRSISSLL-----YECLRPTWQ--QRMQDCIRDCWRTRAL 124
                +   R   LV++ ++N     L      Y+     ++  + +  C       R +
Sbjct: 96  ADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDV 155

Query: 125 ACR--ILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPE-WFRNMPVTVKVDV 181
                ++ H++  +   D GLA+    +  Q       ++ +  PE           +D+
Sbjct: 156 KPHNVMIDHEHRKLRLIDWGLAE--FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDM 213

Query: 182 YSFGVMLLEIISCRCVERQGSDP 204
           +S G ML  +I  +     G D 
Sbjct: 214 WSLGCMLASMIFRKEPFFHGHDN 236

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-09
 Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 38/240 (15%)

Query: 17  NRVFGSFSHIYSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK--------------- 60
            +       +Y   +P G G++  V + V        + +KKL +               
Sbjct: 10  TKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGR-TGAKVAIKKLYRPFQSELFAKRAYREL 68

Query: 61  -VVHVAHHKNLVCLLGYHIEQECR------LLVYKFMHNRSISSLLYECLRPTWQQR--- 110
            ++    H+N++ LL      E         LV  FM       + +E L     Q    
Sbjct: 69  RLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVY 128

Query: 111 -----MQDCIRDCWRTRAL-ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGY 164
                ++         R L    + +++   ++  D GLA+         +TG   T+ Y
Sbjct: 129 QMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA----DSEMTGYVVTRWY 184

Query: 165 LPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
             PE   N M  T  VD++S G ++ E+I+ + + +       L++ + +      E   
Sbjct: 185 RAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ 244

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 34/229 (14%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------VVHVAHHKNLVCLLG 75
           Y+  K  G GSF  VY   L       + +KK+ +          ++    H N+V L  
Sbjct: 22  YTDTKVIGNGSFGVVYQAKL-CDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 80

Query: 76  YHIEQ-ECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWR-----TRALA---- 125
           +     E +  VY  +    +   +Y   R   + +    +           R+LA    
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140

Query: 126 -----------CRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMP 174
                        +L  D   ++  D G AK L+  +    + +       P   F    
Sbjct: 141 FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNV-SYICSRYYRAPELIFGATD 199

Query: 175 VTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPP 223
            T  +DV+S G +L E++  + +    S    L + + +     +E+  
Sbjct: 200 YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIR 248

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 5e-09
 Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 30/226 (13%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y   +  G G++ TV+           + +K++                  ++    HKN
Sbjct: 4   YEKLEKIGEGTYGTVFKAKN-RETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 70  LVCLLGYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIRDCW 119
           +V L       +   LV++F                  +            +  C     
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNV 122

Query: 120 RTRAL-ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVK 178
             R L    +L++    ++ ++ GLA+   I        +       P   F     +  
Sbjct: 123 LHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTS 182

Query: 179 VDVYSFGVMLLEIISCRCVERQGSDPK-TLEKPVMIAIQFVKEKPP 223
           +D++S G +  E+ +       G+D    L++   +     +E+ P
Sbjct: 183 IDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWP 228

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 6e-09
 Identities = 36/267 (13%), Positives = 82/267 (30%), Gaps = 41/267 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y      G G+F  V+           + +KK+                  ++ +  H+N
Sbjct: 12  YEKLAKIGQGTFGEVFKARHRK-TGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 70

Query: 70  LVCLLGYHIEQECR--------LLVYKFMHNRSISSLLYECLRPTWQQR------MQDCI 115
           +V L+     +            LV+ F  +     L    ++ T  +       + + +
Sbjct: 71  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGL 130

Query: 116 RDCWRTRAL-----ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRE---TKGYLPP 167
               R + L     A  +L+     ++ +D GLA+   + +            T  Y PP
Sbjct: 131 YYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPP 190

Query: 168 EWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQFVKEKPPLRP 226
           E           +D++  G ++ E+ +   + +  ++   L     +      E  P   
Sbjct: 191 ELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVD 250

Query: 227 SLRIVALMLQSILEVPSPPCSFAFAIR 253
           +  +   +     +           +R
Sbjct: 251 NYELYEKLELVKGQKRKVKDRLKAYVR 277

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 37/274 (13%), Positives = 90/274 (32%), Gaps = 40/274 (14%)

Query: 12  PSQYENRVFGSFSHI---YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK------- 60
           P+ Y   +  +   +   Y    P G G++ +V            + VKKL +       
Sbjct: 2   PTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTK-TGLRVAVKKLSRPFQSIIH 60

Query: 61  ---------VVHVAHHKNLVCLLGY-----HIEQECRLLVYKFMHNRSISSL-----LYE 101
                    ++    H+N++ LL        +E+   + +   +    ++++     L +
Sbjct: 61  AKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTD 120

Query: 102 CLRPTWQQRMQDCIRDCWRTRALACRI-----LLHDYFTVETSDLGLAKLLMINQTQTLT 156
                   ++   ++       +   +      +++   ++  D GLA+      T    
Sbjct: 121 DHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT---G 177

Query: 157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEKPVMIAIQ 216
            +       P      M     VD++S G ++ E+++ R +         L+  + +   
Sbjct: 178 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT 237

Query: 217 FVKEKPPLRPSLRIVALMLQSILEVPSPPCSFAF 250
              E      S       +QS+ ++P    +  F
Sbjct: 238 PGAELLKKISSESARN-YIQSLTQMPKMNFANVF 270

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 34/214 (15%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK----------------VVHVAHHKN 69
           Y   KP G G+   V     A  D+  + +KKL +                ++   +HKN
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRN-VAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN 77

Query: 70  LVCLLGYHIEQ---ECRLLVYKFMHNRSISSLLYECLRPTWQQR----------MQDCIR 116
           ++ LL     Q   E    VY  M     +      +    ++           ++    
Sbjct: 78  IISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS 137

Query: 117 DCWRTRAL-ACRILLHDYFTVETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPV 175
                R L    I++    T++  D GLA+      +  +T    T+ Y  PE    M  
Sbjct: 138 AGIIHRDLKPSNIVVKSDCTLKILDFGLART--AGTSFMMTPYVVTRYYRAPEVILGMGY 195

Query: 176 TVKVDVYSFGVMLLEIISCRCVERQGSDPKTLEK 209
              VD++S G ++ E++  + +           K
Sbjct: 196 KENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNK 229

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 45/213 (21%)

Query: 27  YSLKKPCG-GSFSTVYTGVLAPGDKTNIGVKKLDK-------------VVHVAHHKNLVC 72
           Y L +  G G FSTV+       + T++ +K +               ++   +  +   
Sbjct: 15  YILVRKLGWGHFSTVWLAKD-MVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTK 73

Query: 73  LLGYHIEQECRLL-VYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALACRIL-- 129
                     +LL  +       +  ++   +       +               +I   
Sbjct: 74  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 133

Query: 130 -------LHDYFTVETSDLGLAKLLM--------------------INQTQTLTGMRETK 162
                  +H    +  +D+    +LM                        +  T   +T+
Sbjct: 134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTR 193

Query: 163 GYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR 195
            Y  PE     P     D++S   ++ E+I+  
Sbjct: 194 EYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.56
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.27
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.41
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	94.74

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-48  Score=315.52  Aligned_cols=216  Identities=23%  Similarity=0.274  Sum_probs=171.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      -++|++.+.||+|+||+||+|.++  ++..||||++.             ++++.++||||++++|++..++..++||||
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~--~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEET--TTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEEC--CCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEe
Confidence            468999999999999999999985  56789999875             388899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++|+|.+++..... ++      +..++..++.++|.++++|+     ||+++.++.+||+|||+++............
T Consensus        82 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~  161 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTG  161 (263)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC---------------
T ss_pred             cCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecc
Confidence            999999999875433 33      44566667788888888887     8999999999999999998765444444445


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCC-CcccC----------------CCCccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR-CVERQ----------------GSDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~-~p~~~----------------~~~~~~~~~~~~l~~~cl~~  220 (266)
                      ..||+.|+|||.+.+..++.++||||||+++|||+|+. +|+..                ..+......+.+++.+||+.
T Consensus       162 ~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~  241 (263)
T d1sm2a_         162 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKE  241 (263)
T ss_dssp             ---CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             eecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccC
Confidence            67899999999999999999999999999999999954 45543                12334556788999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHh
Q 042690          221 KPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~~~~~  240 (266)
                      ||.+|||++++++.|+++.+
T Consensus       242 ~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         242 RPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             SGGGSCCHHHHHHHHHHHHH
T ss_pred             CHhHCcCHHHHHHHHHHHHh
Confidence            99999999999999998865

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-47  Score=313.14  Aligned_cols=207  Identities=20%  Similarity=0.254  Sum_probs=180.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++|.+.+.||+|+||+||+|.++ .+++.||+|++.                 ++++.++||||+++++++.+++..++
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREK-QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   83 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEEC-CCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEE
Confidence            568999999999999999999986 678899999763                 37888999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||||++|+|.+++.....++      +..++..++.++|.++++|+     |||++.++.+||+|||+|.....   ..
T Consensus        84 vmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~---~~  160 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS---SR  160 (263)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCC---CC
T ss_pred             EEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCC---Cc
Confidence            999999999999998766654      45677777888988888887     99999999999999999986542   22


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl~  219 (266)
                      .....||+.|||||++.+.+++.++|||||||++|+|+||+.||...               .+...++.+.+++.+||+
T Consensus       161 ~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  240 (263)
T d2j4za1         161 RTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLK  240 (263)
T ss_dssp             CEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTC
T ss_pred             ccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHcc
Confidence            33467899999999999999999999999999999999999999762               234456778899999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .||.+|||++|+++
T Consensus       241 ~dp~~R~t~~eil~  254 (263)
T d2j4za1         241 HNPSQRPMLREVLE  254 (263)
T ss_dssp             SSGGGSCCHHHHHT
T ss_pred             CCHhHCcCHHHHHc
Confidence            99999999999985

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-47  Score=313.81  Aligned_cols=208  Identities=16%  Similarity=0.179  Sum_probs=178.9

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .+|.+++.||+|+||+||+|.++ .+++.||+|++.              .+++.++||||+++++++.+++..|+||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDV-ATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBT-TTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEEC-CCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            36999999999999999999976 678899999764              378899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccccc
Q 042690           90 MHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTGMR  159 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  159 (266)
                      |++|+|.+++....-     ..+..++..++.++|..+++|+     |||++.+|.+||+|||+|+..... ........
T Consensus        99 ~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~-~~~~~~~~  177 (293)
T d1yhwa1          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE-QSKRSTMV  177 (293)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCST-TCCBCCCC
T ss_pred             cCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccc-cccccccc
Confidence            999999998875321     3455677788899998888888     999999999999999999876432 23334567


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHHhhhcC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQFVKEK  221 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~cl~~~  221 (266)
                      ||+.|||||++.+.+++.++|||||||++|+|+||+.||....                  +......+.+++.+||+.|
T Consensus       178 gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~d  257 (293)
T d1yhwa1         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMD  257 (293)
T ss_dssp             SCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSS
T ss_pred             cCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999999997611                  2334567889999999999


Q ss_pred             CCCCCCHHHHHH
Q 042690          222 PPLRPSLRIVAL  233 (266)
Q Consensus       222 p~~Rps~~~il~  233 (266)
                      |.+|||++|+++
T Consensus       258 P~~R~s~~eil~  269 (293)
T d1yhwa1         258 VEKRGSAKELLQ  269 (293)
T ss_dssp             TTTSCCHHHHTT
T ss_pred             hhHCcCHHHHhc
Confidence            999999999875

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=314.44  Aligned_cols=210  Identities=19%  Similarity=0.234  Sum_probs=178.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .++|++.+.||+|+||+||+|.++ .+++.||+|++.               ++++.++||||+++++++.+++..|+||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivm   82 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNR-VTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL   82 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEE
Confidence            357999999999999999999986 678899999764               3788999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-ccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-QTL  155 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~~~  155 (266)
                      |||++|+|.+++.....++      +..++..++.++|.++++|+     |||++.++.+||+|||+|+....... ...
T Consensus        83 Ey~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~  162 (271)
T d1nvra_          83 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL  162 (271)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCB
T ss_pred             eccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccc
Confidence            9999999999998665543      55677777888998888887     99999999999999999987653332 234


Q ss_pred             ccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~~~  216 (266)
                      ....||+.|||||++.+..+ +.++|||||||++|+|+||+.||....                  ....+..+.+++.+
T Consensus       163 ~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  242 (271)
T d1nvra_         163 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHK  242 (271)
T ss_dssp             CCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHH
T ss_pred             cceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHH
Confidence            45679999999999988776 578999999999999999999996522                  12345677899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+|||++|+++
T Consensus       243 ~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         243 ILVENPSARITIPDIKK  259 (271)
T ss_dssp             HSCSSTTTSCCHHHHTT
T ss_pred             HcCCChhHCcCHHHHhc
Confidence            99999999999999865

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-47  Score=316.55  Aligned_cols=220  Identities=22%  Similarity=0.304  Sum_probs=186.5

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      -+.++|.+.+.||+|+||+||+|.++ .++..||+|++.             .+++.++|||||++++++.+++..++||
T Consensus        14 i~~~~~~~~~~iG~G~fg~Vy~a~~~-~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (287)
T d1opja_          14 MERTDITMKHKLGGGQYGEVYEGVWK-KYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   92 (287)
T ss_dssp             CCGGGEEEEEETTTTTTSSEEEEEEG-GGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEEC-CCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEe
Confidence            35678999999999999999999986 578889999875             3888999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           88 KFMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||++|+|.+++....  .++      +..++..++.++|..+++|+     |||++.++.+||+|||+|+.........
T Consensus        93 E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~  172 (287)
T d1opja_          93 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA  172 (287)
T ss_dssp             ECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEE
T ss_pred             ecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCcee
Confidence            9999999999997542  333      34567777788998888887     9999999999999999998765444444


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHHh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQF  217 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~c  217 (266)
                      .....+++.|+|||.+.+..++.++|||||||++|||++|..|+..                 ..+...+..+.+++.+|
T Consensus       173 ~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~c  252 (287)
T d1opja_         173 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRAC  252 (287)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred             eccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHH
Confidence            4455688999999999988999999999999999999997766544                 22344567888999999


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          218 VKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       218 l~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      |+.||.+|||++++++.|+.+.+.
T Consensus       253 l~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         253 WQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             cCCCHhHCcCHHHHHHHHHHHHHh
Confidence            999999999999999999987653

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-47  Score=315.56  Aligned_cols=233  Identities=18%  Similarity=0.252  Sum_probs=177.6

Q ss_pred             CCchhhhhhHhc--ccCceeeeeccCCCcceEEEEEEEcCCC--cceeeeeeHH---------------HHhhhcCCCce
Q 042690           10 ADPSQYENRVFG--SFSHIYSLKKPCGGSFSTVYTGVLAPGD--KTNIGVKKLD---------------KVVHVAHHKNL   70 (266)
Q Consensus        10 ~~~~~~~~~~~~--~~~~~~~~~~ig~G~~g~V~~~~~~~~~--~~~vaiK~~~---------------~~l~~~~h~~i   70 (266)
                      +||.+-...+..  +.+.|.+.+.||+|+||+||+|.++...  ...||+|.+.               ++++.++||||
T Consensus        10 ~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI   89 (299)
T d1jpaa_          10 EDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV   89 (299)
T ss_dssp             SSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCC
Confidence            345444444332  3568999999999999999999986322  2357888764               37889999999


Q ss_pred             eeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEE
Q 042690           71 VCLLGYHIEQECRLLVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVET  138 (266)
Q Consensus        71 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l  138 (266)
                      |++++++..++..++|||||++|+|.+++.... .++      +..++..++.++|.++++|+     |||++.++.+||
T Consensus        90 v~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl  169 (299)
T d1jpaa_          90 IHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKV  169 (299)
T ss_dssp             CCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred             ccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEE
Confidence            999999999999999999999999999887643 344      44556666788888888887     999999999999


Q ss_pred             eecCcceeecccccc----ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC-------------
Q 042690          139 SDLGLAKLLMINQTQ----TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ-------------  200 (266)
Q Consensus       139 ~Dfg~a~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~-------------  200 (266)
                      +|||+++........    ......+|+.|||||.+.+..++.++|||||||++|||+| |+.||.+             
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~  249 (299)
T d1jpaa_         170 SDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQD  249 (299)
T ss_dssp             CCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT
T ss_pred             CCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcC
Confidence            999999876432221    1123457889999999998899999999999999999998 8889876             


Q ss_pred             ---CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          201 ---GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       201 ---~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                         ..+...+..+.+++.+||+.||.+|||+++|++.|+++.+.|
T Consensus       250 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p  294 (299)
T d1jpaa_         250 YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP  294 (299)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcCh
Confidence               223445677889999999999999999999999999987754

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-47  Score=310.76  Aligned_cols=216  Identities=22%  Similarity=0.322  Sum_probs=179.1

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.++|++.+.||+|+||.||+|.++  ++..||||++.             +++++++|||||++++++. ++..++|||
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~--~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~E   87 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYN--GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE   87 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET--TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEEC--CCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEE
Confidence            4578999999999999999999985  67789999875             3788999999999999875 456789999


Q ss_pred             cCCCCCHHHHHhhcC--CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++|+|.+++....  .++      +..++..++.++|.++++|+     ||+++.++.+||+|||+|+..........
T Consensus        88 y~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~  167 (272)
T d1qpca_          88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAR  167 (272)
T ss_dssp             CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECC
T ss_pred             eCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCccccc
Confidence            999999999876432  244      44556666688888887777     99999999999999999998754444444


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ....+|+.|||||.+.+..++.++|||||||++|||+||..|+..                 ..+...+..+.+++.+||
T Consensus       168 ~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl  247 (272)
T d1qpca_         168 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCW  247 (272)
T ss_dssp             TTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHT
T ss_pred             cccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHc
Confidence            556789999999999888899999999999999999997655433                 123445677889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHh
Q 042690          219 KEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +.||.+|||+++|++.|+.+..
T Consensus       248 ~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         248 KERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCHhHCcCHHHHHHHhhhhhh
Confidence            9999999999999999998743

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-46  Score=308.41  Aligned_cols=215  Identities=20%  Similarity=0.289  Sum_probs=172.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +.++|.+.+.||+|+||+||+|.++    ..||+|++.                .+++.++|||||++++++. ++..++
T Consensus         6 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~l   80 (276)
T d1uwha_           6 PDGQITVGQRIGSGSFGTVYKGKWH----GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAI   80 (276)
T ss_dssp             CTTCCCCCSEEEECSSCEEEEEESS----SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             ccccEEEEEEEeeCCCcEEEEEEEC----CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEE
Confidence            3568999999999999999999863    248998764                3788999999999999875 456889


Q ss_pred             EEEcCCCCCHHHHHhhc-CCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc-
Q 042690           86 VYKFMHNRSISSLLYEC-LRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT-  152 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~-~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-  152 (266)
                      |||||++|+|.+++... ..+++      ..++..++.++|..+++|+     |||++.++.+||+|||+|+....... 
T Consensus        81 v~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~  160 (276)
T d1uwha_          81 VTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGS  160 (276)
T ss_dssp             EEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC-------
T ss_pred             EEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCc
Confidence            99999999999999754 33444      4556667788888888887     89999999999999999987643222 


Q ss_pred             cccccccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCCC---------------------Cccccc
Q 042690          153 QTLTGMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------DPKTLE  208 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------~~~~~~  208 (266)
                      .......||+.|||||++.+   .+++.++|||||||++|||+||+.||.+..                     +...+.
T Consensus       161 ~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  240 (276)
T d1uwha_         161 HQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPK  240 (276)
T ss_dssp             -----CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCH
T ss_pred             ccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchH
Confidence            23345678999999998864   357899999999999999999999997611                     223445


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .+.+++.+||+.||.+|||+++|++.|+.+.+.
T Consensus       241 ~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~  273 (276)
T d1uwha_         241 AMKRLMAECLKKKRDERPLFPQILASIELLARS  273 (276)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHc
Confidence            788999999999999999999999999998764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-46  Score=310.09  Aligned_cols=208  Identities=15%  Similarity=0.169  Sum_probs=175.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +.|++++.||+|+||+||+|.++ .++..||+|++.              ++++.++|||||++++++.+++..++||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNK-ETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEEC-CCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            35889999999999999999986 678899999864              388899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |++|+|.+++.+.. .++      +..++..++.++|.++++|+     |||++.++.+||+|||+|...... ......
T Consensus        91 ~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~-~~~~~~  169 (288)
T d2jfla1          91 CAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT-IQRRDS  169 (288)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH-HHHHTC
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCC-cccccc
Confidence            99999999986543 343      44667777788988888887     999999999999999999875422 222345


Q ss_pred             ccCCCCcCCccccC-----CCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHHH
Q 042690          158 MRETKGYLPPEWFR-----NMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMIA  214 (266)
Q Consensus       158 ~~~~~~y~aPE~~~-----~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l~  214 (266)
                      ..||+.|||||++.     +..++.++|||||||++|+|+||+.||....                  +...+..+.+++
T Consensus       170 ~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li  249 (288)
T d2jfla1         170 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFL  249 (288)
T ss_dssp             CCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHH
T ss_pred             cccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHH
Confidence            67899999999874     4558899999999999999999999997621                  233456788999


Q ss_pred             HHhhhcCCCCCCCHHHHHH
Q 042690          215 IQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~  233 (266)
                      .+||+.||.+|||++|+++
T Consensus       250 ~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         250 KKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             HHHSCSSTTTSCCHHHHTT
T ss_pred             HHHccCChhHCcCHHHHhc
Confidence            9999999999999999875

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-47  Score=310.20  Aligned_cols=209  Identities=19%  Similarity=0.227  Sum_probs=165.6

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe--CCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE--QECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~--~~~~~   84 (266)
                      .++|++++.||+|+||+||+|+++ .+++.||+|.+.                ++++.++||||+++++++.+  ++.+|
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~   81 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRK-SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEEC-CCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEE
Confidence            468999999999999999999986 678899999764                37778899999999999865  45689


Q ss_pred             EEEEcCCCCCHHHHHhhc----CCC------CHHHHHHHHHHHhhh----------cCccccceeecCCCEEEEeecCcc
Q 042690           85 LVYKFMHNRSISSLLYEC----LRP------TWQQRMQDCIRDCWR----------TRALACRILLHDYFTVETSDLGLA  144 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~----~~~------~~~~~l~~~~~~~~~----------~~~~h~nili~~~~~~~l~Dfg~a  144 (266)
                      +|||||++|+|.+++...    ..+      .+..++..++.++|.          +++.+.|||++.++.+||+|||++
T Consensus        82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a  161 (269)
T d2java1          82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  161 (269)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHH
T ss_pred             EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccce
Confidence            999999999999998642    233      344566666666664          444445999999999999999999


Q ss_pred             eeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC----------------CCCccccc
Q 042690          145 KLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ----------------GSDPKTLE  208 (266)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~----------------~~~~~~~~  208 (266)
                      +..... ........||+.|||||++.+..++.++|||||||++|+|+||+.||..                ..+...+.
T Consensus       162 ~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~s~  240 (269)
T d2java1         162 RILNHD-TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSD  240 (269)
T ss_dssp             HHC------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCH
T ss_pred             eecccC-CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCcccCH
Confidence            876432 2233456789999999999998999999999999999999999999976                12344567


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+.+++.+||+.||.+|||++|+++
T Consensus       241 ~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         241 ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHh
Confidence            8889999999999999999999875

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-46  Score=314.50  Aligned_cols=206  Identities=15%  Similarity=0.181  Sum_probs=173.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .+|++++.||+|+||+||+|.++ .++..||+|++.               .+++.++|||||++++++.+++..++|||
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHK-PSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEET-TTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCCEEEEEEecCCCeEEEEEEEC-CCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            47999999999999999999986 678999999864               37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhh-cCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           89 FMHNRSISSLLYECLRPT------WQQRMQDCIRDCWR-TRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~-~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |+++|+|.+++.+...+.      +..++..++.++|+ ++++|+     |||++.+|.+||+|||+|+....   ....
T Consensus        85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~---~~~~  161 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---SMAN  161 (322)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH---HTC-
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCC---Cccc
Confidence            999999999998776654      33455666677775 467776     99999999999999999986542   2223


Q ss_pred             cccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCCc--------------------------------
Q 042690          157 GMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSDP--------------------------------  204 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~~--------------------------------  204 (266)
                      ...||+.|||||++.+.+++.++||||+||++|||++|+.||......                                
T Consensus       162 ~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (322)
T d1s9ja_         162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYG  241 (322)
T ss_dssp             --CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC--------------------------
T ss_pred             cccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccc
Confidence            467999999999999999999999999999999999999999642110                                


Q ss_pred             ---------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 ---------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 ---------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                 ..+..+.+++.+||..||.+|||++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~  297 (322)
T d1s9ja_         242 MDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  297 (322)
T ss_dssp             ----CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                                       12356788999999999999999999986

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-46  Score=311.07  Aligned_cols=209  Identities=16%  Similarity=0.163  Sum_probs=177.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      ++|++.+.||+|+||+||+|.++ .+++.||+|++.                 ++++.++||||+++++++.+++..|+|
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLAREL-ATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            57999999999999999999986 678899999764                 277889999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc-ccc
Q 042690           87 YKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ-TQT  154 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~-~~~  154 (266)
                      ||||++|+|.+++...+.++      +..++..++.++|..+++|+     ||+++.++.++|+|||+|+...... ...
T Consensus        87 mEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~  166 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR  166 (288)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC-------
T ss_pred             EEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcccc
Confidence            99999999999998776655      44566777788888888887     9999999999999999998764322 223


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl~  219 (266)
                      .....||+.|||||++.+..++.++|||||||++|+|+||+.||..               ..+......+.+++.+||+
T Consensus       167 ~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  246 (288)
T d1uu3a_         167 ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLV  246 (288)
T ss_dssp             ---CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSC
T ss_pred             cccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHcc
Confidence            3456799999999999999999999999999999999999999976               2234566788899999999


Q ss_pred             cCCCCCCCHHHHHH
Q 042690          220 EKPPLRPSLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rps~~~il~  233 (266)
                      .||.+|||++|+++
T Consensus       247 ~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         247 LDATKRLGCEEMEG  260 (288)
T ss_dssp             SSGGGSTTSGGGTC
T ss_pred             CCHhHCcCHHHHcC
Confidence            99999999998754

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-46  Score=304.89  Aligned_cols=212  Identities=23%  Similarity=0.287  Sum_probs=181.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .++|++.++||+|+||+||+|+++  +++.||||++.             ++++.++||||+++++++.+++.+++||||
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~--~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR--GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET--TTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEEC
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC--CCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEc
Confidence            357889999999999999999985  77889999875             388899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           90 MHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      +++|+|.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.+||+|||+++............
T Consensus        81 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~  160 (258)
T d1k2pa_          81 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG  160 (258)
T ss_dssp             CTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCC
T ss_pred             cCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecc
Confidence            99999999976432 23      355667777899999999887     8999999999999999998765444444445


Q ss_pred             ccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhhc
Q 042690          158 MRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVKE  220 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~~  220 (266)
                      ..+|+.|+|||.+.+..++.++||||||+++|||+| |+.||..                ..+......+.+++.+||+.
T Consensus       161 ~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~  240 (258)
T d1k2pa_         161 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHE  240 (258)
T ss_dssp             SCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCS
T ss_pred             cCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccC
Confidence            678999999999998899999999999999999998 7888876                22334456788999999999


Q ss_pred             CCCCCCCHHHHHHHHH
Q 042690          221 KPPLRPSLRIVALMLQ  236 (266)
Q Consensus       221 ~p~~Rps~~~il~~l~  236 (266)
                      ||.+|||++++++.|.
T Consensus       241 dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         241 KADERPTFKILLSNIL  256 (258)
T ss_dssp             SGGGSCCHHHHHHHHH
T ss_pred             CHhHCcCHHHHHHHhh
Confidence            9999999999999875

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.2e-46  Score=309.42  Aligned_cols=206  Identities=17%  Similarity=0.141  Sum_probs=166.2

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      .|.+.+.||+|+||+||+|.++ .+++.||+|++.               .+++.++||||+++++++.+++..|+||||
T Consensus        10 ~Y~~~~~lG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~   88 (307)
T d1a06a_          10 IYDFRDVLGTGAFSEVILAEDK-RTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQL   88 (307)
T ss_dssp             TEEEEEESBSGGGGGEEEEEET-TTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ceEEEEEEeeccCeEEEEEEEC-CCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            4899999999999999999986 678899999764               378899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeec---CCCEEEEeecCcceeecccccccc
Q 042690           90 MHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLH---DYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~---~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |++|+|.+++.....++      +..++..++.++|.++++|+     ||++.   +++.+||+|||+++....  ....
T Consensus        89 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~--~~~~  166 (307)
T d1a06a_          89 VSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP--GSVL  166 (307)
T ss_dssp             CCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC--------------
T ss_pred             cCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccC--CCee
Confidence            99999999998766654      45667777788898888887     89985   578999999999986542  2233


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~~  216 (266)
                      ....||+.|||||++.+..++.++|||||||++|+|+||+.||....                   .+..++.+.+++.+
T Consensus       167 ~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  246 (307)
T d1a06a_         167 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRH  246 (307)
T ss_dssp             ------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred             eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHH
Confidence            45679999999999999999999999999999999999999997611                   13456778899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+|||++|+++
T Consensus       247 ~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         247 LMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             HSCSSGGGSCCHHHHHH
T ss_pred             HccCCHhHCcCHHHHhc
Confidence            99999999999999976

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-46  Score=306.93  Aligned_cols=221  Identities=22%  Similarity=0.287  Sum_probs=176.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      ++++|++.+.||+|+||.||+|.++  ++..||||++.             .+++.++|||||++++++. ++..++|||
T Consensus        15 ~~~~~~i~~~iG~G~fg~Vy~~~~~--~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~E   91 (285)
T d1fmka3          15 PRESLRLEVKLGQGCFGEVWMGTWN--GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTE   91 (285)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET--TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEC
T ss_pred             CHHHEEEeeEEeeCCCeEEEEEEEC--CCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEE
Confidence            4679999999999999999999985  55679999875             3788999999999999985 456889999


Q ss_pred             cCCCCCHHHHHhhc--CCCCH------HHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYEC--LRPTW------QQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~--~~~~~------~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++|+|..++...  ..+++      ..++..++.++|..+++|+     |||++.++.+||+|||+++..........
T Consensus        92 y~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~  171 (285)
T d1fmka3          92 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  171 (285)
T ss_dssp             CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             ecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceee
Confidence            99999999988642  33444      4555566688888888887     89999999999999999987654444444


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ....+|+.|+|||.+.+..++.++||||||+++|||+||..|+..                 ..++.....+.+++.+||
T Consensus       172 ~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl  251 (285)
T d1fmka3         172 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW  251 (285)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHc
Confidence            456789999999999988999999999999999999997665543                 234555678889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhCCCCC
Q 042690          219 KEKPPLRPSLRIVALMLQSILEVPSPP  245 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~~~~~~  245 (266)
                      +.||++||++++|+++|+.+.....|+
T Consensus       252 ~~dP~~Rps~~~i~~~L~~~~~~~~p~  278 (285)
T d1fmka3         252 RKEPEERPTFEYLQAFLEDYFTSTEPQ  278 (285)
T ss_dssp             CSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred             ccCHhHCcCHHHHHHHHhhhhcCCCCC
Confidence            999999999999999999987665543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-45  Score=304.12  Aligned_cols=220  Identities=19%  Similarity=0.288  Sum_probs=173.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCC---cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGD---KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~---~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +.|.+.+.||+|+||.||+|.++...   ...||||++.               .+++.++|||||++++++.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            57889999999999999999986322   2468999764               37888999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+.++++.+++.... .+.      +..++..++.++|..+++|+     |||++.++.+||+|||+++........
T Consensus        87 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~  166 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA  166 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------
T ss_pred             EEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCcc
Confidence            999999999999887543 344      44456666688888888877     999999999999999999876433222


Q ss_pred             --ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC-----------------CCCccccchHHHHH
Q 042690          154 --TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ-----------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       154 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~-----------------~~~~~~~~~~~~l~  214 (266)
                        ......||+.|||||.+.+..++.++|||||||++|||+|+..|+..                 ..+...+..+.+++
T Consensus       167 ~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li  246 (283)
T d1mqba_         167 TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLM  246 (283)
T ss_dssp             -------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHH
T ss_pred             ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHH
Confidence              22345678999999999998999999999999999999997665543                 22344567788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                      .+||+.||.+||++.+|++.|+++.+.|+
T Consensus       247 ~~cl~~~p~~RPt~~eil~~L~~l~~~p~  275 (283)
T d1mqba_         247 MQCWQQERARRPKFADIVSILDKLIRAPD  275 (283)
T ss_dssp             HHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             HHHCcCCHhHCcCHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999988654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=311.01  Aligned_cols=216  Identities=20%  Similarity=0.176  Sum_probs=178.3

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCC----CcceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPG----DKTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~----~~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~   81 (266)
                      +.++|.+.+.||+|+||+||+|.++..    ....||+|.+.               .+++.+ +|||||++++++.+++
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            446899999999999999999997522    23468888763               256666 8999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC-----------------------CC------HHHHHHHHHHHhhhcCcccc-----c
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR-----------------------PT------WQQRMQDCIRDCWRTRALAC-----R  127 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~-----------------------~~------~~~~l~~~~~~~~~~~~~h~-----n  127 (266)
                      ..++|||||++|+|.+++.....                       ++      +..++..++.++|..+++|+     |
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~N  194 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  194 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhc
Confidence            99999999999999999975421                       22      45567777788888888887     9


Q ss_pred             eeecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccCC----
Q 042690          128 ILLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQG----  201 (266)
Q Consensus       128 ili~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~~----  201 (266)
                      |+++.++.+||+|||+|+........ ......+|+.|||||.+.+..++.++|||||||++|||+| |+.||.+.    
T Consensus       195 ill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~  274 (325)
T d1rjba_         195 VLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA  274 (325)
T ss_dssp             EEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH
T ss_pred             cccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHH
Confidence            99999999999999999876543332 2234567999999999998899999999999999999998 89998761    


Q ss_pred             -------------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 042690          202 -------------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQS  237 (266)
Q Consensus       202 -------------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~  237 (266)
                                   .+...+..+.+++.+||+.||.+|||++||++.|..
T Consensus       275 ~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~  323 (325)
T d1rjba_         275 NFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGC  323 (325)
T ss_dssp             HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHhC
Confidence                         233456678899999999999999999999999864

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-45  Score=299.84  Aligned_cols=203  Identities=20%  Similarity=0.287  Sum_probs=167.9

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe----CCeEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE----QECRLL   85 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~----~~~~~l   85 (266)
                      |++.++||+|+||+||+|.+. .++..||+|.+.                ++++.++|||||++++++.+    +..+++
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~-~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDT-ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEEC-CCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            456778999999999999986 678889999764                37889999999999999875    345899


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcC--cccc-----ceeec-CCCEEEEeecCcceeecccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTR--ALAC-----RILLH-DYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~--~~h~-----nili~-~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ||||+++|+|.+++.....++      +..++..++.++|.++  ++|+     |||++ .++.+||+|||+|+...   
T Consensus        90 vmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~---  166 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR---  166 (270)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC---
T ss_pred             EEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceecc---
Confidence            999999999999998766644      4566677778888777  7877     89997 47899999999997643   


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC------------------CccccchHHHH
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS------------------DPKTLEKPVMI  213 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~------------------~~~~~~~~~~l  213 (266)
                      ........||+.|||||++.+ .++.++|||||||++|+|++|+.||.+..                  +....+.+.++
T Consensus       167 ~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  245 (270)
T d1t4ha_         167 ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEI  245 (270)
T ss_dssp             TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHH
T ss_pred             CCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHH
Confidence            222335679999999998876 58999999999999999999999997521                  11234568899


Q ss_pred             HHHhhhcCCCCCCCHHHHHH
Q 042690          214 AIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       214 ~~~cl~~~p~~Rps~~~il~  233 (266)
                      +.+||+.||.+|||++|+++
T Consensus       246 i~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         246 IEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             HHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHccCCHhHCcCHHHHhC
Confidence            99999999999999999975

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.1e-45  Score=307.40  Aligned_cols=203  Identities=17%  Similarity=0.168  Sum_probs=173.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .|..+++||+|+||+||+|.+. .+++.||+|++.                 ++++.++|||||++++++.+++..|+||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDV-RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEET-TTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEEC-CCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            4889999999999999999986 678899999764                 3788999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |||.+|+|..++.....++      +..++..++.++|.++++|+     |||++.++.+||+|||+|.....     ..
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~-----~~  169 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-----AN  169 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-----BC
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC-----CC
Confidence            9999999988877666654      45667777788998888887     99999999999999999986432     23


Q ss_pred             cccCCCCcCCccccCC---CCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHHHHHH
Q 042690          157 GMRETKGYLPPEWFRN---MPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVMIAIQ  216 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~---~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~l~~~  216 (266)
                      ...||+.|||||++.+   ..++.++|||||||++|+|++|+.||.+.                 .+...++.+.+++.+
T Consensus       170 ~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~  249 (309)
T d1u5ra_         170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDS  249 (309)
T ss_dssp             CCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHH
T ss_pred             ccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHH
Confidence            4569999999998864   45889999999999999999999999761                 122356678899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+|||++++++
T Consensus       250 ~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         250 CLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HTCSSGGGSCCHHHHTT
T ss_pred             HCcCChhHCcCHHHHHh
Confidence            99999999999999875

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=305.87  Aligned_cols=210  Identities=17%  Similarity=0.158  Sum_probs=182.2

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++++|.+++.||+|+||.||+|+++ .+++.||+|++.                 .+++.++||||+++++++.++..+|
T Consensus         3 ~l~dy~~~~~lG~G~fg~V~~~~~~-~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           3 TMNDFDYLKLLGKGTFGKVILVREK-ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEE
T ss_pred             chHhcEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccc
Confidence            4578999999999999999999986 688999999864                 2788899999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +|||||++|+|.+++.....++      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+.... ...
T Consensus        82 iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~-~~~  160 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-DGA  160 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-TTC
T ss_pred             cceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeeccccccccc-CCc
Confidence            9999999999999998776654      44667777799999998888     99999999999999999986542 233


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|||||++.+..++.++|+|||||++|+|++|+.||..               ..+...+..+.+++.+||
T Consensus       161 ~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L  240 (337)
T d1o6la_         161 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLL  240 (337)
T ss_dssp             CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             ccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhc
Confidence            44457799999999999999999999999999999999999999977               224456778889999999


Q ss_pred             hcCCCCCCC-----HHHHHH
Q 042690          219 KEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps-----~~~il~  233 (266)
                      +.||.+|++     ++++++
T Consensus       241 ~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         241 KKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CSSTTTSTTCSTTTHHHHHT
T ss_pred             cCCchhhcccccccHHHHHc
Confidence            999999995     677764

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-45  Score=301.98  Aligned_cols=216  Identities=17%  Similarity=0.214  Sum_probs=176.6

Q ss_pred             Cceeeee-ccCCCcceEEEEEEEcC-CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           24 SHIYSLK-KPCGGSFSTVYTGVLAP-GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        24 ~~~~~~~-~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      .++.+.+ +||+|+||.||+|.++. +++..||||.+.               +++++++|||||++++++.+ +..++|
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            5677777 49999999999998752 345679999864               37889999999999999865 457899


Q ss_pred             EEcCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           87 YKFMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      ||||++|+|.+++... ..++      +..++..++.++|..+++|+     ||+++.++.+||+|||+++........ 
T Consensus        87 mE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~  166 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY  166 (285)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEE
T ss_pred             EEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhccccccccc
Confidence            9999999999998654 3344      45666677788888888887     899999999999999999876533222 


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~  215 (266)
                       ......||+.|||||.+.+..++.++|||||||++|||+| |+.||..                ..++..+..+.+++.
T Consensus       167 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~  246 (285)
T d1u59a_         167 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMS  246 (285)
T ss_dssp             CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             ccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHH
Confidence             2233567899999999988889999999999999999998 8999976                223455677889999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +||+.||.+||++.+|.+.|+....
T Consensus       247 ~cl~~~p~~RPs~~~i~~~L~~~~~  271 (285)
T d1u59a_         247 DCWIYKWEDRPDFLTVEQRMRACYY  271 (285)
T ss_dssp             HTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999987643

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=300.53  Aligned_cols=209  Identities=20%  Similarity=0.221  Sum_probs=172.2

Q ss_pred             eccCCCcceEEEEEEEcC-CCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEcCCC
Q 042690           30 KKPCGGSFSTVYTGVLAP-GDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKFMHN   92 (266)
Q Consensus        30 ~~ig~G~~g~V~~~~~~~-~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   92 (266)
                      ++||+|+||+||+|.++. ..++.||+|++.                +++++++|||||++++++.++ ..++|||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~-~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS-SEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC-CEEEEEEcCCC
Confidence            479999999999998752 456789999764                378899999999999998654 57899999999


Q ss_pred             CCHHHHHhhcCCCCHH------HHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--cccccc
Q 042690           93 RSISSLLYECLRPTWQ------QRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--TLTGMR  159 (266)
Q Consensus        93 ~~L~~~l~~~~~~~~~------~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~  159 (266)
                      |+|.+++.....+++.      .++..++.++|.++++|+     ||+++.++.+||+|||+++........  ......
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~  171 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK  171 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----C
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccC
Confidence            9999999887765544      455666688888888877     999999999999999999876433222  223456


Q ss_pred             CCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhhhcCC
Q 042690          160 ETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFVKEKP  222 (266)
Q Consensus       160 ~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl~~~p  222 (266)
                      ||+.|||||.+.+..++.++||||||+++|||+| |+.||.+                ..+...+..+.+++.+||+.||
T Consensus       172 gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp  251 (277)
T d1xbba_         172 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDV  251 (277)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             CCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCH
Confidence            8899999999988889999999999999999998 8999976                2234456788899999999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 042690          223 PLRPSLRIVALMLQSIL  239 (266)
Q Consensus       223 ~~Rps~~~il~~l~~~~  239 (266)
                      .+|||+++|.+.|+.+.
T Consensus       252 ~~RPs~~~i~~~L~~~~  268 (277)
T d1xbba_         252 ENRPGFAAVELRLRNYY  268 (277)
T ss_dssp             TTSCCHHHHHHHHHHHH
T ss_pred             hHCcCHHHHHHHhhCHH
Confidence            99999999999988763

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-44  Score=302.03  Aligned_cols=206  Identities=17%  Similarity=0.203  Sum_probs=179.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +++|.+++.||+|+||+||+|.++ .+++.||+|++.                 .+++.++||||+++++++.+++..|+
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~-~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   81 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSR-HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEEC-CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeee
Confidence            468999999999999999999986 678899999864                 27788999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      |||||++|+|.+++.....+.      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+....    .
T Consensus        82 vmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~----~  157 (316)
T d1fota_          82 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD----V  157 (316)
T ss_dssp             EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSS----C
T ss_pred             EeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEecc----c
Confidence            999999999999998766643      45677777888898888887     99999999999999999987542    2


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl~  219 (266)
                      .....||+.|||||++.+..++.++|||||||++|+|+||+.||..               ..++..+..+.+++.+||+
T Consensus       158 ~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  237 (316)
T d1fota_         158 TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLIT  237 (316)
T ss_dssp             BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhh
Confidence            2346799999999999999999999999999999999999999976               2244566788899999999


Q ss_pred             cCCCCCC-----CHHHHHH
Q 042690          220 EKPPLRP-----SLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rp-----s~~~il~  233 (266)
                      .||.+|+     +++++++
T Consensus       238 ~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         238 RDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             SCTTTCTTSSTTTTHHHHT
T ss_pred             hCHHhccccchhhHHHHHc
Confidence            9999996     8898874

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=301.55  Aligned_cols=206  Identities=15%  Similarity=0.177  Sum_probs=175.9

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      .|.+.+.||+|+||+||+|.++ .+++.||+|++.                    .+++.++|||||++++++.+++..|
T Consensus        11 ~Y~~~~~lG~G~fg~Vy~~~~~-~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          11 YYDTGEELGSGQFAVVKKCREK-STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             TEEEEEEEEECSSEEEEEEEET-TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             CEEEeEEEecCCCeEEEEEEEC-CCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            5899999999999999999986 678899999753                    3788999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC----EEEEeecCcceeecc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF----TVETSDLGLAKLLMI  149 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~----~~~l~Dfg~a~~~~~  149 (266)
                      +|||||++|+|.+++.....++      +..++..++.++|..+++|+     ||+++.++    .+|++|||++.....
T Consensus        90 iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~  169 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  169 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT
T ss_pred             EEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCC
Confidence            9999999999999998766654      44666677788888888887     89998776    599999999987642


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKP  210 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~  210 (266)
                        ........+|+.|+|||++.+..++.++||||+||++|+|+||+.||.+..               +    +..+..+
T Consensus       170 --~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~  247 (293)
T d1jksa_         170 --GNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALA  247 (293)
T ss_dssp             --SCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHH
T ss_pred             --CccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHH
Confidence              233345678999999999999899999999999999999999999997622               1    2345567


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHH
Q 042690          211 VMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       211 ~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+++.+||+.||.+|||++++++
T Consensus       248 ~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         248 KDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHccCChhHCcCHHHHhc
Confidence            88999999999999999999975

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=298.60  Aligned_cols=217  Identities=17%  Similarity=0.178  Sum_probs=168.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      .++|++.+.||+|+||.||+|.+...  .+..||+|.+.               .+++.++||||+++++++. ++..++
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~i   84 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI   84 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEE
Confidence            46899999999999999999997532  34568888765               3788999999999999985 567899


Q ss_pred             EEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           86 VYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      ||||+++|+|.+++.... .++      +..++..++.++|.++++|+     ||+++.++.+||+|||+|+........
T Consensus        85 v~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~  164 (273)
T d1mp8a_          85 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY  164 (273)
T ss_dssp             EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------
T ss_pred             EEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcce
Confidence            999999999999876543 343      34566667788888888887     899999999999999999876544444


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHH
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQ  216 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~  216 (266)
                      ......+|+.|+|||.+.+..++.++|||||||++|||+| |.+||..                ..++..+..+.+++.+
T Consensus       165 ~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~  244 (273)
T d1mp8a_         165 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTK  244 (273)
T ss_dssp             ------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHH
T ss_pred             eccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Confidence            4445668899999999998899999999999999999998 7888865                2234456788899999


Q ss_pred             hhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          217 FVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ||+.||.+|||+++|++.|+.+.+
T Consensus       245 cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         245 CWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCCHhHCcCHHHHHHHHHHHHH
Confidence            999999999999999999998754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1e-44  Score=308.23  Aligned_cols=208  Identities=14%  Similarity=0.175  Sum_probs=177.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +++|++++.||+|+||+||+|.++ .+++.||+|++.              ++++.++|||||++++++.+++.+|+|||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEK-ATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            457999999999999999999986 678999999764              37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeec--CCCEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLH--DYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~--~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||++|+|.+++.... .++      +..++..++.++|.++++|+     |||++  .++.+||+|||+|......  ..
T Consensus       107 ~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~--~~  184 (352)
T d1koba_         107 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD--EI  184 (352)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT--SC
T ss_pred             cCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCC--Cc
Confidence            999999999886543 343      55677778889998888887     99998  5789999999999886532  23


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~~l~~  215 (266)
                      .....+|+.|||||++.+..++.++|||||||++|+|+||+.||.+..                   .+..+..+.+++.
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  264 (352)
T d1koba_         185 VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIK  264 (352)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHH
T ss_pred             eeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Confidence            334668999999999999999999999999999999999999997611                   1235677889999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+|||++|+++
T Consensus       265 ~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         265 NLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             TTSCSSGGGSCCHHHHHT
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1e-44  Score=308.02  Aligned_cols=208  Identities=16%  Similarity=0.181  Sum_probs=176.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      +.+|.+.+.||+|+||.||+|.++ .+++.||+|++.              .+++.++|||||++++++.+++.+|+|||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~-~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTER-ATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEET-TTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            457999999999999999999986 678899999764              37889999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeec--CCCEEEEeecCcceeeccccccc
Q 042690           89 FMHNRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLH--DYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        89 ~~~~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~--~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||++|+|.+++... ..++      +..++..++.++|.++++|+     |||++  .++.+||+|||+++....  ...
T Consensus       104 ~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~--~~~  181 (350)
T d1koaa2         104 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP--KQS  181 (350)
T ss_dssp             CCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCT--TSC
T ss_pred             cCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccc--ccc
Confidence            99999999999643 3443      55677778899998888887     89996  468899999999987642  223


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC---------------C----ccccchHHHHHH
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS---------------D----PKTLEKPVMIAI  215 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------~----~~~~~~~~~l~~  215 (266)
                      .....||+.|||||++.+..++.++|||||||++|+|+||+.||....               +    +..+..+.+++.
T Consensus       182 ~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~  261 (350)
T d1koaa2         182 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIR  261 (350)
T ss_dssp             EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHH
T ss_pred             cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHH
Confidence            344678999999999999999999999999999999999999997521               1    234567789999


Q ss_pred             HhhhcCCCCCCCHHHHHH
Q 042690          216 QFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~  233 (266)
                      +||+.||.+|||++|+++
T Consensus       262 ~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         262 KLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             HHCCSSGGGSCCHHHHHH
T ss_pred             HHccCChhHCcCHHHHhc
Confidence            999999999999999986

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-44  Score=305.29  Aligned_cols=208  Identities=18%  Similarity=0.172  Sum_probs=176.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcCCCceeeeeeEEEeCC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAHHKNLVCLLGYHIEQE   81 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~h~~iv~~~~~~~~~~   81 (266)
                      ++.+|.+.+.||+|+||.||+|.++ .+++.||+|++.                    .+++.++||||+++++++.+++
T Consensus         2 slddy~i~~~lG~G~fg~Vy~~~~~-~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~   80 (364)
T d1omwa3           2 TMNDFSVHRIIGRGGFGEVYGCRKA-DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD   80 (364)
T ss_dssp             CSTTEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred             CHHhCeeeeEEecCCCeEEEEEEEC-CCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECC
Confidence            3578999999999999999999986 678999999763                    1445667999999999999999


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      ..|+|||||++|+|.+++.....+.      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+.....
T Consensus        81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred             EEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCC
Confidence            9999999999999999998766644      44667777788888888887     999999999999999999876432


Q ss_pred             cccccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCC------------------CCccccchHH
Q 042690          151 QTQTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQG------------------SDPKTLEKPV  211 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~------------------~~~~~~~~~~  211 (266)
                         ......||+.|||||++.+ ..++.++|||||||++|+|+||+.||...                  .+...++.+.
T Consensus       161 ---~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  237 (364)
T d1omwa3         161 ---KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELR  237 (364)
T ss_dssp             ---CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHH
T ss_pred             ---cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHH
Confidence               2334679999999998864 56899999999999999999999999752                  1234567788


Q ss_pred             HHHHHhhhcCCCCCCC-----HHHHHH
Q 042690          212 MIAIQFVKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps-----~~~il~  233 (266)
                      +++.+||+.||.+||+     ++++++
T Consensus       238 ~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         238 SLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             HHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             HHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            9999999999999999     677764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-44  Score=302.80  Aligned_cols=208  Identities=17%  Similarity=0.218  Sum_probs=178.0

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHHH------------------HhhhcCCCceeeeeeEEEeCCeEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLDK------------------VVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~~------------------~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      +++|.+.+.||+|+||+||+|.++ .+++.||+|++.+                  +.+.++||||+++++++.+++..|
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~-~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~y   79 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFK-KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF   79 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEET-TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEEC-CCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCcee
Confidence            357999999999999999999986 6889999998741                  234689999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           85 LVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      +||||+++|+|.+++.....++      +..++..++.++|.++++|+     |||++.++.+||+|||+++.... ...
T Consensus        80 ivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~-~~~  158 (320)
T d1xjda_          80 FVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENML-GDA  158 (320)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-TTC
T ss_pred             EEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhccc-ccc
Confidence            9999999999999998776654      44566677799998888888     89999999999999999986542 223


Q ss_pred             ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC---------------CCccccchHHHHHHHhh
Q 042690          154 TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG---------------SDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~---------------~~~~~~~~~~~l~~~cl  218 (266)
                      ......||+.|+|||++.+..++.++|||||||++|+|+||+.||.+.               .+...+..+.+++.+||
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L  238 (320)
T d1xjda_         159 KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLF  238 (320)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHS
T ss_pred             cccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHhc
Confidence            334567899999999999999999999999999999999999999762               23345678889999999


Q ss_pred             hcCCCCCCCHH-HHH
Q 042690          219 KEKPPLRPSLR-IVA  232 (266)
Q Consensus       219 ~~~p~~Rps~~-~il  232 (266)
                      +.||.+||++. +++
T Consensus       239 ~~dP~~R~s~~~~l~  253 (320)
T d1xjda_         239 VREPEKRLGVRGDIR  253 (320)
T ss_dssp             CSSGGGSBTTBSCGG
T ss_pred             ccCCCCCcCHHHHHH
Confidence            99999999985 664

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-44  Score=293.80  Aligned_cols=212  Identities=21%  Similarity=0.246  Sum_probs=171.0

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCceeeeeeEEEe-CCeEEEEEE
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNLVCLLGYHIE-QECRLLVYK   88 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv~e   88 (266)
                      +.++|++.+.||+|+||.||+|.+   .+..||+|++.            +++++++||||++++|++.. ++.+++|||
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~---~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDY---RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE---TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEE---CCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEe
Confidence            466899999999999999999998   46789999886            38889999999999999854 456899999


Q ss_pred             cCCCCCHHHHHhhcC--C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccc
Q 042690           89 FMHNRSISSLLYECL--R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~--~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |+++|+|.+++....  .      +.+..++..++.++|..+++|+     ||+++.++.++++|||+++.....    .
T Consensus        82 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~----~  157 (262)
T d1byga_          82 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST----Q  157 (262)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC----C
Confidence            999999999996532  1      3455667777788888888887     899999999999999999865322    2


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHHHHhh
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~~~cl  218 (266)
                      ....++..|+|||.+.+..++.++||||||+++|||+| |++|+..                ..++.....+.+++.+||
T Consensus       158 ~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl  237 (262)
T d1byga_         158 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCW  237 (262)
T ss_dssp             ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHT
T ss_pred             ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHc
Confidence            23456889999999988899999999999999999998 6767755                223445678889999999


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHh
Q 042690          219 KEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       219 ~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      +.||.+|||+.+++++|+.+..
T Consensus       238 ~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         238 HLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             CSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccCHhHCcCHHHHHHHHHHHHh
Confidence            9999999999999999998754

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-43  Score=296.56  Aligned_cols=221  Identities=19%  Similarity=0.239  Sum_probs=179.5

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCC-cceeeeeeHH---------------HHhhhc-CCCceeeeeeEEEeCCeE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGD-KTNIGVKKLD---------------KVVHVA-HHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~-~~~vaiK~~~---------------~~l~~~-~h~~iv~~~~~~~~~~~~   83 (266)
                      -++++|++.+.||+|+||.||+|.++... ...||||++.               ++++.+ +||||+++++++.+.+..
T Consensus         7 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~   86 (309)
T d1fvra_           7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYL   86 (309)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEE
T ss_pred             cCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCee
Confidence            36789999999999999999999986222 2357888754               367777 699999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhc----------------CCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEE
Q 042690           84 LLVYKFMHNRSISSLLYEC----------------LRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTV  136 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~----------------~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~  136 (266)
                      ++||||+++|+|.+++...                ..++      +..++..++.++|..+++|+     |||++.++.+
T Consensus        87 ~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          87 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCE
T ss_pred             EEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCce
Confidence            9999999999999999643                2233      45667777788888888887     8999999999


Q ss_pred             EEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCC-cccC---------------
Q 042690          137 ETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRC-VERQ---------------  200 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~-p~~~---------------  200 (266)
                      ||+|||+++.....  .......+|..|+|||.+.+..++.++||||||+++|||++|.. ||..               
T Consensus       167 kl~DfG~a~~~~~~--~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~  244 (309)
T d1fvra_         167 KIADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR  244 (309)
T ss_dssp             EECCTTCEESSCEE--CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCC
T ss_pred             EEcccccccccccc--ccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCC
Confidence            99999999865322  22234558999999999988889999999999999999999765 5654               


Q ss_pred             -CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCCC
Q 042690          201 -GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVPS  243 (266)
Q Consensus       201 -~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~~  243 (266)
                       ..+...+..+.+++.+||+.||++|||++++++.|+++.+...
T Consensus       245 ~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         245 LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence             1234456788999999999999999999999999999987544

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-44  Score=293.04  Aligned_cols=215  Identities=20%  Similarity=0.212  Sum_probs=169.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCC--CcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPG--DKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~--~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .++|++.+.||+|+||.||+|+++..  ....||+|.+.                 ++++.++||||+++++++.+ ...
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            46899999999999999999997533  34478999875                 26889999999999999965 467


Q ss_pred             EEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           84 LLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      ++||||++++++.+++.... .+      .+..++..++.++|..+++|+     ||+++.++.+||+|||+++......
T Consensus        86 ~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~  165 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND  165 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C
T ss_pred             heeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCC
Confidence            89999999999999876533 33      445666677788888888887     8999999999999999999764332


Q ss_pred             cc--ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC-----------------CCCccccchHH
Q 042690          152 TQ--TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ-----------------GSDPKTLEKPV  211 (266)
Q Consensus       152 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~-----------------~~~~~~~~~~~  211 (266)
                      ..  ......++..|+|||.+.+..++.++||||||+++|||+| |+.||..                 ..++..+..+.
T Consensus       166 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~  245 (273)
T d1u46a_         166 DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIY  245 (273)
T ss_dssp             CEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHH
T ss_pred             CcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHH
Confidence            22  2233457889999999998889999999999999999998 8999966                 22344567888


Q ss_pred             HHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRPSLRIVALMLQSI  238 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rps~~~il~~l~~~  238 (266)
                      +++.+||+.||.+|||+++|++.|++.
T Consensus       246 ~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         246 NVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            999999999999999999999998864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-43  Score=299.49  Aligned_cols=206  Identities=15%  Similarity=0.099  Sum_probs=179.2

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCCeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQECRLL   85 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~~~~l   85 (266)
                      +.+|++++.||+|+||.||+|.++ .+++.||+|++.                 .+++.++||||+++++++.+....++
T Consensus        40 ld~y~i~~~lG~G~fg~Vy~a~~~-~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~  118 (350)
T d1rdqe_          40 LDQFDRIKTLGTGSFGRVMLVKHK-ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYM  118 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCeEEEEEeecCcCcEEEEEEEC-CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccc
Confidence            567999999999999999999986 678899999763                 27788999999999999999999999


Q ss_pred             EEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccc
Q 042690           86 VYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQT  154 (266)
Q Consensus        86 v~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~  154 (266)
                      ||||+.+|+|.+++.....++      +..++..++.++|.++++|+     |||++.+|.+||+|||+|+....    .
T Consensus       119 v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~----~  194 (350)
T d1rdqe_         119 VMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG----R  194 (350)
T ss_dssp             EEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS----C
T ss_pred             ccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeeccc----c
Confidence            999999999999998766654      55667777789998888887     99999999999999999987642    2


Q ss_pred             cccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccC---------------CCCccccchHHHHHHHhhh
Q 042690          155 LTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQ---------------GSDPKTLEKPVMIAIQFVK  219 (266)
Q Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~---------------~~~~~~~~~~~~l~~~cl~  219 (266)
                      .....||+.|||||++.+..++.++|||||||++|+|+||+.||..               ..+......+.+++.+||+
T Consensus       195 ~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~  274 (350)
T d1rdqe_         195 TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQ  274 (350)
T ss_dssp             BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSC
T ss_pred             cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhh
Confidence            2346789999999999999999999999999999999999999976               2234466788899999999


Q ss_pred             cCCCCCC-----CHHHHHH
Q 042690          220 EKPPLRP-----SLRIVAL  233 (266)
Q Consensus       220 ~~p~~Rp-----s~~~il~  233 (266)
                      .||.+|+     +++++++
T Consensus       275 ~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         275 VDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             SCTTTCTTSSTTTTHHHHT
T ss_pred             hCHHhccccccccHHHHHc
Confidence            9999994     8888875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-43  Score=297.17  Aligned_cols=216  Identities=19%  Similarity=0.261  Sum_probs=173.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcc----eeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKT----NIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~----~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~~   84 (266)
                      ++|++++.||+|+||+||+|.+. .+++    .||+|++.               ++++.++|||||++++++.++ ..+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~-~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWI-PEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEEC-C----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEc-CCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-Cee
Confidence            57999999999999999999986 3333    57888653               388899999999999999865 467


Q ss_pred             EEEEcCCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           85 LVYKFMHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ++|||+.+++|.+++.... .++      +..++..++.++|.++++|+     ||+++.++.+||+|||+++.......
T Consensus        87 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~  166 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEK  166 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC
T ss_pred             EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccc
Confidence            8899999999999887643 333      44567777788898888888     99999999999999999987643332


Q ss_pred             c-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------------CCCccccchHHHHH
Q 042690          153 Q-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------------GSDPKTLEKPVMIA  214 (266)
Q Consensus       153 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------------~~~~~~~~~~~~l~  214 (266)
                      . ......||+.|||||.+.+..++.++|||||||++|||+| |..||..                ..++.....+.+++
T Consensus       167 ~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li  246 (317)
T d1xkka_         167 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIM  246 (317)
T ss_dssp             --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHH
T ss_pred             cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHH
Confidence            2 2233568999999999988899999999999999999999 6778765                22344567788999


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          215 IQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       215 ~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      .+||+.||.+|||+.+|++.|+.+...
T Consensus       247 ~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         247 VKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            999999999999999999999887554

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=296.16  Aligned_cols=219  Identities=21%  Similarity=0.229  Sum_probs=170.8

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHHH---------------Hhhh-cCCCceeeeeeEEEeC-C
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLDK---------------VVHV-AHHKNLVCLLGYHIEQ-E   81 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~~---------------~l~~-~~h~~iv~~~~~~~~~-~   81 (266)
                      .++|++.+.||+|+||.||+|.+..    .+++.||+|++..               .+.+ .+|+||+.+++++..+ .
T Consensus        12 ~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~   91 (299)
T d1ywna1          12 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   91 (299)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTS
T ss_pred             HHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCC
Confidence            4689999999999999999999752    3456899998752               3334 4689999999998765 4


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcC----------------CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCC
Q 042690           82 CRLLVYKFMHNRSISSLLYECL----------------RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYF  134 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~----------------~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~  134 (266)
                      ..++|||||++|+|.+++....                .+      .+..++..++.++|.++++|+     |||++.++
T Consensus        92 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~  171 (299)
T d1ywna1          92 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKN  171 (299)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGG
T ss_pred             eEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCC
Confidence            6899999999999999997432                12      244566777788888888887     99999999


Q ss_pred             EEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCC-cccCC-----------
Q 042690          135 TVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRC-VERQG-----------  201 (266)
Q Consensus       135 ~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~-p~~~~-----------  201 (266)
                      .+||+|||+|+........ ......||+.|||||.+.+..++.++|||||||++|||+|+.. ||...           
T Consensus       172 ~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~  251 (299)
T d1ywna1         172 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLK  251 (299)
T ss_dssp             CEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHH
T ss_pred             cEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHh
Confidence            9999999999876433332 3334678999999999998899999999999999999999754 66541           


Q ss_pred             ------CCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          202 ------SDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       202 ------~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                            .+...+..+.+++.+||+.||.+|||++++++.|+.+.+.
T Consensus       252 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         252 EGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                  1234556788999999999999999999999999988653

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.5e-44  Score=297.15  Aligned_cols=218  Identities=18%  Similarity=0.203  Sum_probs=179.1

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcC----CCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCeE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAP----GDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQECR   83 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~~   83 (266)
                      .++|.+.+.||+|+||+||+|.++.    .++..||||++.               ++++.++||||+++++++...+..
T Consensus        12 ~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~   91 (301)
T d1lufa_          12 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPM   91 (301)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSC
T ss_pred             HHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCce
Confidence            4579999999999999999999752    356789999874               378889999999999999999999


Q ss_pred             EEEEEcCCCCCHHHHHhhcCC------------------------CC------HHHHHHHHHHHhhhcCcccc-----ce
Q 042690           84 LLVYKFMHNRSISSLLYECLR------------------------PT------WQQRMQDCIRDCWRTRALAC-----RI  128 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~------------------------~~------~~~~l~~~~~~~~~~~~~h~-----ni  128 (266)
                      +++|||+++|+|.+++.....                        ++      +..++..++.++|..+++|+     ||
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NI  171 (301)
T d1lufa_          92 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNC  171 (301)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccce
Confidence            999999999999999964321                        22      34556666688888777777     89


Q ss_pred             eecCCCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCC-cccC------
Q 042690          129 LLHDYFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRC-VERQ------  200 (266)
Q Consensus       129 li~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~-p~~~------  200 (266)
                      |++.++.+||+|||+++........ ......+++.|+|||.+.+..++.++|||||||++|||++|.. ||..      
T Consensus       172 Lld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~  251 (301)
T d1lufa_         172 LVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV  251 (301)
T ss_dssp             EECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH
T ss_pred             EECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHH
Confidence            9999999999999999865433222 2334567899999999999899999999999999999999964 6654      


Q ss_pred             ----------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          201 ----------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       201 ----------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                                ..+...+..+.+++.+||+.||.+|||+.+|+++|+++.+
T Consensus       252 ~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~~  301 (301)
T d1lufa_         252 IYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE  301 (301)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence                      2234566788999999999999999999999999998753

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.6e-43  Score=288.40  Aligned_cols=208  Identities=17%  Similarity=0.190  Sum_probs=175.9

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------------HHhhhcC-CCceeeeeeEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------------KVVHVAH-HKNLVCLLGYHI   78 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------------~~l~~~~-h~~iv~~~~~~~   78 (266)
                      +++|++.+.||+|+||+||+|+++ .+++.||+|++.                       .++++++ ||||+++++++.
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~-~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~   80 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHK-PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   80 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             cccCEEceEEecCcCeEEEEEEEC-CCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence            468999999999999999999976 678899999852                       2666776 999999999999


Q ss_pred             eCCeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           79 EQECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      +++..|+|||||++|+|.+++.....++      +..++..++.++|.++++|+     ||+++.++.+||+|||++...
T Consensus        81 ~~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  160 (277)
T d1phka_          81 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL  160 (277)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             cCcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEc
Confidence            9999999999999999999998776654      44667777788888888887     899999999999999999876


Q ss_pred             ccccccccccccCCCCcCCccccCC------CCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRN------MPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------  202 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------  202 (266)
                      ..  ........||..|+|||.+.+      ..++.++||||+||++|+|+||+.||....                   
T Consensus       161 ~~--~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~  238 (277)
T d1phka_         161 DP--GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPE  238 (277)
T ss_dssp             CT--TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTT
T ss_pred             cC--CCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence            43  223345678999999998752      346889999999999999999999997721                   


Q ss_pred             CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                      .+..++.+.+++.+||+.||.+|||++|+++
T Consensus       239 ~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         239 WDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             GGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            1245667889999999999999999999864

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.2e-43  Score=289.65  Aligned_cols=214  Identities=15%  Similarity=0.142  Sum_probs=172.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------------HHhhhcCCCceeeeeeEEEeCC----eE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------------KVVHVAHHKNLVCLLGYHIEQE----CR   83 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------------~~l~~~~h~~iv~~~~~~~~~~----~~   83 (266)
                      +|.+.+.||+|+||+||+|.+. .+++.||+|.+.                 ++++.++||||+++++++...+    ..
T Consensus         8 rY~i~~~lG~G~fg~Vy~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           8 RYELGEILGFGGMSEVHLARDL-RLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             eeEEeEEEeeCCCeEEEEEEEC-CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            6999999999999999999976 678899999864                 3778899999999999987653    37


Q ss_pred             EEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           84 LLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      |+||||+++++|.+++...+.++      +..++..++.++|..+++|+     ||+++.++..+++|||.+........
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~  166 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGN  166 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----
T ss_pred             EEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccccc
Confidence            89999999999999998776654      44566677788888888877     99999999999999999876542222


Q ss_pred             --cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------CccccchHH
Q 042690          153 --QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------DPKTLEKPV  211 (266)
Q Consensus       153 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------~~~~~~~~~  211 (266)
                        .......||+.|||||++.+..+++++|||||||++|+|+||+.||....                   .+..+..+.
T Consensus       167 ~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~  246 (277)
T d1o6ya_         167 SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLD  246 (277)
T ss_dssp             ------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHH
T ss_pred             cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHH
Confidence              23334678999999999999899999999999999999999999997622                   123456788


Q ss_pred             HHHHHhhhcCCCCCC-CHHHHHHHHHHHH
Q 042690          212 MIAIQFVKEKPPLRP-SLRIVALMLQSIL  239 (266)
Q Consensus       212 ~l~~~cl~~~p~~Rp-s~~~il~~l~~~~  239 (266)
                      +++.+||+.||.+|| |++++++.|.++.
T Consensus       247 ~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         247 AVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             HHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            999999999999999 8999999888764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-43  Score=297.96  Aligned_cols=209  Identities=14%  Similarity=0.142  Sum_probs=171.7

Q ss_pred             cCceeeee-ccCCCcceEEEEEEEcCCCcceeeeeeHH---------HHh-hhcCCCceeeeeeEEEe----CCeEEEEE
Q 042690           23 FSHIYSLK-KPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------KVV-HVAHHKNLVCLLGYHIE----QECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~-~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------~~l-~~~~h~~iv~~~~~~~~----~~~~~lv~   87 (266)
                      +++|++++ .||+|+||+||+|.+. .+++.||+|++.         +++ +..+||||+++++++.+    +..+|+||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~-~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivm   88 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNK-RTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVM   88 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEET-TTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEEC-CCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEE
Confidence            35788876 5999999999999986 578899999875         244 45589999999999876    35689999


Q ss_pred             EcCCCCCHHHHHhhcC--CC------CHHHHHHHHHHHhhhcCcccc-----ceeecC---CCEEEEeecCcceeecccc
Q 042690           88 KFMHNRSISSLLYECL--RP------TWQQRMQDCIRDCWRTRALAC-----RILLHD---YFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~--~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~---~~~~~l~Dfg~a~~~~~~~  151 (266)
                      |||++|+|.+++....  .+      .+..++..++.++|..+++|+     |||++.   ++.+||+|||+|+....  
T Consensus        89 Ey~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~--  166 (335)
T d2ozaa1          89 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS--  166 (335)
T ss_dssp             ECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCC--
T ss_pred             ECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccC--
Confidence            9999999999997643  33      355667778899998888887     899985   56799999999987643  


Q ss_pred             ccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------ccccc
Q 042690          152 TQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTLE  208 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~~  208 (266)
                      ........||+.|||||++.+..++.++|||||||++|+|+||+.||.....                       ...++
T Consensus       167 ~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  246 (335)
T d2ozaa1         167 HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE  246 (335)
T ss_dssp             CCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCH
T ss_pred             CCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCH
Confidence            2233456799999999999998999999999999999999999999965221                       12345


Q ss_pred             hHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                      .+.+++.+||+.||.+|||++++++.
T Consensus       247 ~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         247 EVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHccCChhHCcCHHHHHcC
Confidence            67889999999999999999999873

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-43  Score=291.75  Aligned_cols=219  Identities=18%  Similarity=0.229  Sum_probs=176.4

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcC------CCcceeeeeeHHH---------------Hhhhc-CCCceeeeeeEEEe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAP------GDKTNIGVKKLDK---------------VVHVA-HHKNLVCLLGYHIE   79 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~~~vaiK~~~~---------------~l~~~-~h~~iv~~~~~~~~   79 (266)
                      +.++|.+.+.||+|+||.||+|+...      ..+..||+|++..               .++.+ +|||||++++++.+
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            45799999999999999999998642      2345789998752               44455 79999999999999


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcC----------------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecC
Q 042690           80 QECRLLVYKFMHNRSISSLLYECL----------------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHD  132 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~----------------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~  132 (266)
                      ++..++||||+++|+|.+++....                .      +.+..++..++.++|..+++|+     |||++.
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~  170 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTE  170 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECT
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecC
Confidence            999999999999999999997542                1      3455677777788998888887     899999


Q ss_pred             CCEEEEeecCcceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHh-CCCcccC----------
Q 042690          133 YFTVETSDLGLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIIS-CRCVERQ----------  200 (266)
Q Consensus       133 ~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~t-g~~p~~~----------  200 (266)
                      ++.+||+|||+++........ ......+++.|+|||.+.+..++.++||||||+++|||+| |.+||..          
T Consensus       171 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i  250 (299)
T d1fgka_         171 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLL  250 (299)
T ss_dssp             TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHH
Confidence            999999999999876533222 2234567889999999988899999999999999999998 6777765          


Q ss_pred             ------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          201 ------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       201 ------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                            ..+...+..+.+++.+||+.||.+|||+.|+++.|+++..
T Consensus       251 ~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         251 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             HTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence                  2234456788999999999999999999999999998753

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-43  Score=295.90  Aligned_cols=208  Identities=13%  Similarity=0.169  Sum_probs=177.3

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhcCCCceeeeeeEEEeCCeEEEEEEc
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVAHHKNLVCLLGYHIEQECRLLVYKF   89 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   89 (266)
                      +++|.+.+.||+|+||+||+|.++ .+++.||+|.+.             ++++.++||||+++++++.+++.+|+||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~-~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVET-SSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEEC-CCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            568999999999999999999986 678899999765             378899999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-CCC------HHHHHHHHHHHhhhcCcccc-----ceeecCC--CEEEEeecCcceeecccccccc
Q 042690           90 MHNRSISSLLYECL-RPT------WQQRMQDCIRDCWRTRALAC-----RILLHDY--FTVETSDLGLAKLLMINQTQTL  155 (266)
Q Consensus        90 ~~~~~L~~~l~~~~-~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~--~~~~l~Dfg~a~~~~~~~~~~~  155 (266)
                      |++|+|.+++.... .++      +..++..++.++|.++++|+     |||++.+  ..++|+|||++.....  ....
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~--~~~~  160 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP--GDNF  160 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT--TCEE
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcccc--CCcc
Confidence            99999999998654 343      45667778899998888888     8999854  4899999999987642  2223


Q ss_pred             ccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-------------------ccccchHHHHHHH
Q 042690          156 TGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-------------------PKTLEKPVMIAIQ  216 (266)
Q Consensus       156 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-------------------~~~~~~~~~l~~~  216 (266)
                      ....+++.|+|||...+..++.++||||+||++|+|++|..||.....                   +..+..+.+++.+
T Consensus       161 ~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~  240 (321)
T d1tkia_         161 RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDR  240 (321)
T ss_dssp             EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHT
T ss_pred             cccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHH
Confidence            345689999999999998999999999999999999999999976221                   1245667899999


Q ss_pred             hhhcCCCCCCCHHHHHH
Q 042690          217 FVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       217 cl~~~p~~Rps~~~il~  233 (266)
                      ||+.||.+|||++|+++
T Consensus       241 ~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         241 LLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TSCSSGGGSCCHHHHHH
T ss_pred             HccCChhHCcCHHHHhc
Confidence            99999999999999986

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-43  Score=293.89  Aligned_cols=221  Identities=19%  Similarity=0.232  Sum_probs=182.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCCe
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQEC   82 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~~   82 (266)
                      +.++|.+.+.||+|+||+||+|.++    ..++..||||++.               ++++.++||||+++++++..+..
T Consensus        18 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~   97 (308)
T d1p4oa_          18 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   97 (308)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCc
Confidence            4579999999999999999999874    2346789999875               37889999999999999999999


Q ss_pred             EEEEEEcCCCCCHHHHHhhcC----------C------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeec
Q 042690           83 RLLVYKFMHNRSISSLLYECL----------R------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDL  141 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~----------~------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Df  141 (266)
                      .++||||+++|+|.+++....          .      ..+..++..++.++|..+++|+     |||++.++.+||+||
T Consensus        98 ~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DF  177 (308)
T d1p4oa_          98 TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDF  177 (308)
T ss_dssp             CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCT
T ss_pred             eeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeec
Confidence            999999999999999987431          1      2345566667788888888887     999999999999999


Q ss_pred             Ccceeecccccc-ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCC-CcccC----------------CCC
Q 042690          142 GLAKLLMINQTQ-TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCR-CVERQ----------------GSD  203 (266)
Q Consensus       142 g~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~-~p~~~----------------~~~  203 (266)
                      |+++........ ......+|+.|+|||.+.+..++.++||||||+++|||+||. +|+..                ..+
T Consensus       178 Gla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p  257 (308)
T d1p4oa_         178 GMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKP  257 (308)
T ss_dssp             TCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCC
T ss_pred             ccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCc
Confidence            999876433222 233456899999999999889999999999999999999986 56654                223


Q ss_pred             ccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhCC
Q 042690          204 PKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEVP  242 (266)
Q Consensus       204 ~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~~  242 (266)
                      ...+..+.+++.+||+.||.+|||+++|++.|++..++.
T Consensus       258 ~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~  296 (308)
T d1p4oa_         258 DNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG  296 (308)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred             ccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCC
Confidence            445578899999999999999999999999998886643

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-42  Score=289.34  Aligned_cols=216  Identities=21%  Similarity=0.319  Sum_probs=175.0

Q ss_pred             eeeeeccCCCcceEEEEEEEcCCC--cceeeeeeHH---------------HHhhhcCCCceeeeeeEEEe-CCeEEEEE
Q 042690           26 IYSLKKPCGGSFSTVYTGVLAPGD--KTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIE-QECRLLVY   87 (266)
Q Consensus        26 ~~~~~~ig~G~~g~V~~~~~~~~~--~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~-~~~~~lv~   87 (266)
                      ++..+.||+|+||+||+|.+....  ...||+|++.               +++++++||||+++++++.. ++..++||
T Consensus        29 ~~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          29 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             eccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEE
Confidence            334678999999999999985332  3468999874               37889999999999999876 56889999


Q ss_pred             EcCCCCCHHHHHhhcCC-------CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc--
Q 042690           88 KFMHNRSISSLLYECLR-------PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ--  153 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~-------~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~--  153 (266)
                      |||++++|.+++.....       +.+..++..++.++|..+++|+     |||+++++.+||+|||+++........  
T Consensus       109 E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             EEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence            99999999999875432       2345566677788888888887     899999999999999999876432221  


Q ss_pred             -ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCC-----------------CCccccchHHHHHH
Q 042690          154 -TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQG-----------------SDPKTLEKPVMIAI  215 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~-----------------~~~~~~~~~~~l~~  215 (266)
                       ......||..|+|||.+.+..++.++||||||+++|||+||..||...                 .+......+.+++.
T Consensus       189 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~  268 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVML  268 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred             eecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHH
Confidence             222356889999999988888999999999999999999988777541                 23344567889999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          216 QFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       216 ~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      +||+.||.+||++.||++.|+++...
T Consensus       269 ~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         269 KCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             HHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999999775

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-42  Score=285.19  Aligned_cols=206  Identities=17%  Similarity=0.282  Sum_probs=172.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------HHhhhcC--CCceeeeeeEEEeCC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------KVVHVAH--HKNLVCLLGYHIEQE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------~~l~~~~--h~~iv~~~~~~~~~~   81 (266)
                      ++|.+.+.||+|+||+||+|.+. .+++.||+|++.                    .+++.++  ||||+++++++.+++
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRV-SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CeEEEeEEEeeCCCeEEEEEEEC-CCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            47999999999999999999986 678899999764                    2666776  899999999999999


Q ss_pred             eEEEEEEcCCC-CCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecC-CCEEEEeecCcceeec
Q 042690           82 CRLLVYKFMHN-RSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHD-YFTVETSDLGLAKLLM  148 (266)
Q Consensus        82 ~~~lv~e~~~~-~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~-~~~~~l~Dfg~a~~~~  148 (266)
                      ..++||||+.+ +++.+++.....++      +..++..++.++|..+++|+     ||+++. ++.+||+|||+|....
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~  162 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK  162 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecc
Confidence            99999999986 68888887766654      44666677788888888887     999985 4799999999998653


Q ss_pred             cccccccccccCCCCcCCccccCCCCC-CcccchhhHHHHHHHHHhCCCcccC---------CCCccccchHHHHHHHhh
Q 042690          149 INQTQTLTGMRETKGYLPPEWFRNMPV-TVKVDVYSFGVMLLEIISCRCVERQ---------GSDPKTLEKPVMIAIQFV  218 (266)
Q Consensus       149 ~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~Di~slG~i~~~l~tg~~p~~~---------~~~~~~~~~~~~l~~~cl  218 (266)
                         ........||+.|+|||++.+..+ +.++|||||||++|+|+||+.||..         ..+...+..+.+++.+||
T Consensus       163 ---~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~~~~~~~~~s~~~~~li~~~L  239 (273)
T d1xwsa_         163 ---DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCL  239 (273)
T ss_dssp             ---SSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHT
T ss_pred             ---cccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHHhhcccCCCCCCCHHHHHHHHHHc
Confidence               223345679999999999887665 5679999999999999999999976         234556788899999999


Q ss_pred             hcCCCCCCCHHHHHH
Q 042690          219 KEKPPLRPSLRIVAL  233 (266)
Q Consensus       219 ~~~p~~Rps~~~il~  233 (266)
                      +.||.+|||++|+++
T Consensus       240 ~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         240 ALRPSDRPTFEEIQN  254 (273)
T ss_dssp             CSSGGGSCCHHHHHT
T ss_pred             cCCHhHCcCHHHHhc
Confidence            999999999999875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-42  Score=288.82  Aligned_cols=214  Identities=17%  Similarity=0.164  Sum_probs=164.6

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------H--HhhhcCCCceeeeeeEEEeCC----eEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------K--VVHVAHHKNLVCLLGYHIEQE----CRLLV   86 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~--~l~~~~h~~iv~~~~~~~~~~----~~~lv   86 (266)
                      .+|.+.+.||+|+||.||+|++   ++..||||++.           +  .++.++||||+++++++..++    ..++|
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~---~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv   79 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW---RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE---TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE---CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEE
Confidence            3688899999999999999997   67899999874           1  334678999999999997654    58999


Q ss_pred             EEcCCCCCHHHHHhhcCCCCHHHH------HHHHHHHhh-------------hcCccccceeecCCCEEEEeecCcceee
Q 042690           87 YKFMHNRSISSLLYECLRPTWQQR------MQDCIRDCW-------------RTRALACRILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~------l~~~~~~~~-------------~~~~~h~nili~~~~~~~l~Dfg~a~~~  147 (266)
                      |||+++|+|.+++++. .+++...      +..++.++|             |+++.+.||||+.++.+||+|||+++..
T Consensus        80 ~Ey~~~g~L~~~l~~~-~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~  158 (303)
T d1vjya_          80 SDYHEHGSLFDYLNRY-TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH  158 (303)
T ss_dssp             EECCTTCBHHHHHHHC-CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             EecccCCCHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccc
Confidence            9999999999999764 4544433      334445555             4444445999999999999999999886


Q ss_pred             cccccc---ccccccCCCCcCCccccCCCC------CCcccchhhHHHHHHHHHhCCCcccCCC----------------
Q 042690          148 MINQTQ---TLTGMRETKGYLPPEWFRNMP------VTVKVDVYSFGVMLLEIISCRCVERQGS----------------  202 (266)
Q Consensus       148 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------  202 (266)
                      ......   ......||+.|||||++.+..      ++.++|||||||++|||+||..|+....                
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~  238 (303)
T d1vjya_         159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV  238 (303)
T ss_dssp             ETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred             cCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchH
Confidence            533222   223467999999999887543      5678999999999999999987663200                


Q ss_pred             ----------------Cc-----cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          203 ----------------DP-----KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       203 ----------------~~-----~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                                      +.     .....+.+++.+||+.||.+|||+.||++.|+.+.+.
T Consensus       239 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         239 EEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence                            00     0112377899999999999999999999999988754

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-42  Score=289.96  Aligned_cols=232  Identities=19%  Similarity=0.199  Sum_probs=186.0

Q ss_pred             CCchhhhhhH--hcccCceeeeeccCCCcceEEEEEEEc----CCCcceeeeeeHH---------------HHhhhc-CC
Q 042690           10 ADPSQYENRV--FGSFSHIYSLKKPCGGSFSTVYTGVLA----PGDKTNIGVKKLD---------------KVVHVA-HH   67 (266)
Q Consensus        10 ~~~~~~~~~~--~~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~~~vaiK~~~---------------~~l~~~-~h   67 (266)
                      .||+++....  .-..++|++.+.||+|+||.||+|.++    ...+..||+|++.               .+++.+ +|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~H   86 (311)
T d1t46a_           7 IDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH   86 (311)
T ss_dssp             CCTTTSCCCGGGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             eCcccCCCcccccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCC
Confidence            3555555311  123478999999999999999999863    3567789999875               255666 69


Q ss_pred             CceeeeeeEEEeCCeEEEEEEcCCCCCHHHHHhhcC------------------CC------CHHHHHHHHHHHhhhcCc
Q 042690           68 KNLVCLLGYHIEQECRLLVYKFMHNRSISSLLYECL------------------RP------TWQQRMQDCIRDCWRTRA  123 (266)
Q Consensus        68 ~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~------------------~~------~~~~~l~~~~~~~~~~~~  123 (266)
                      ||||++++++.++...++|||||++|+|.+++....                  .+      .+..++..++.++|.+++
T Consensus        87 pnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~i  166 (311)
T d1t46a_          87 MNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNC  166 (311)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            999999999999999999999999999999997542                  12      355777777889998888


Q ss_pred             ccc-----ceeecCCCEEEEeecCcceeeccccc-cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhC-CC
Q 042690          124 LAC-----RILLHDYFTVETSDLGLAKLLMINQT-QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISC-RC  196 (266)
Q Consensus       124 ~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg-~~  196 (266)
                      +|+     ||+++.++.++++|||+++....... .......+|+.|+|||.+.+..++.++||||||+++|||+|+ .+
T Consensus       167 vHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p  246 (311)
T d1t46a_         167 IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS  246 (311)
T ss_dssp             CCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eecccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCC
Confidence            887     99999999999999999987653322 233346789999999999888899999999999999999995 55


Q ss_pred             cccC-----------------CCCccccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhC
Q 042690          197 VERQ-----------------GSDPKTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILEV  241 (266)
Q Consensus       197 p~~~-----------------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~~  241 (266)
                      |+..                 ..+...+..+.+++.+||+.||.+|||+++|+++|++....
T Consensus       247 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         247 PYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             SSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            5544                 11234557788999999999999999999999999986543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-42  Score=288.20  Aligned_cols=204  Identities=20%  Similarity=0.197  Sum_probs=168.1

Q ss_pred             eeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------------HHhhhcCCCceeeeeeEEEeCCeEEEEEE
Q 042690           28 SLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------------KVVHVAHHKNLVCLLGYHIEQECRLLVYK   88 (266)
Q Consensus        28 ~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   88 (266)
                      .++.||+|+||+||+|.++ .+++.||+|++.                   .+++.++|||||++++++.+++..++|||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE   80 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDK-NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFD   80 (299)
T ss_dssp             EEEEEEEETTEEEEEEECS-SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEE
T ss_pred             cceEeccCcCeEEEEEEEC-CCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhh
Confidence            4678999999999999976 678899999764                   37888999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccccccc
Q 042690           89 FMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        89 ~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      |+.++++..+......+      .+..++..++.++|..+++|+     |||++.++.+||+|||+++..... ......
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~-~~~~~~  159 (299)
T d1ua2a_          81 FMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP-NRAYTH  159 (299)
T ss_dssp             CCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC-CCCCCC
T ss_pred             hhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCC-cccccc
Confidence            99987776666544433      456678888889998888887     999999999999999999875422 223344


Q ss_pred             ccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..||+.|+|||.+.+ ..++.++|||||||++|+|+||+.||.....                                 
T Consensus       160 ~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (299)
T d1ua2a_         160 QVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKS  239 (299)
T ss_dssp             SCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCC
T ss_pred             eecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhcc
Confidence            678999999998764 4579999999999999999999999864210                                 


Q ss_pred             ----------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 ----------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 ----------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                +.....+.+++.+||+.||.+|||++|+++
T Consensus       240 ~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         240 FPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             CCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                      123457788999999999999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-41  Score=280.26  Aligned_cols=209  Identities=20%  Similarity=0.298  Sum_probs=170.4

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLV   86 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv   86 (266)
                      +++|++++.||+|+||+||+|.+. .+++.||+|++.                ++++.++||||+++++++.+++..|+|
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNK-LTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEEC-CCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEE
Confidence            358999999999999999999986 678899999863                378899999999999999999999999


Q ss_pred             EEcCCCCCHHHHHhh--cCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc
Q 042690           87 YKFMHNRSISSLLYE--CLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~--~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                      |||+.+ ++.+++..  ...+      .+..++..++.++|..+++|+     |||++.++.+||+|||+|+.... ...
T Consensus        80 ~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~-~~~  157 (298)
T d1gz8a_          80 FEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV-PVR  157 (298)
T ss_dssp             EECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCC-CSB
T ss_pred             EeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccC-Ccc
Confidence            999976 55555532  2333      345667777788888888887     99999999999999999987542 233


Q ss_pred             ccccccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------------
Q 042690          154 TLTGMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------------  203 (266)
Q Consensus       154 ~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------------  203 (266)
                      ......||+.|+|||.+.... ++.++|+||+||++|+|++|+.||.....                             
T Consensus       158 ~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  237 (298)
T d1gz8a_         158 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYK  237 (298)
T ss_dssp             CTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             cceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccc
Confidence            344567899999999876655 57899999999999999999999864210                             


Q ss_pred             ---------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ---------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ---------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                     +.....+.+++.+||+.||.+|||++|+++-
T Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         238 PSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             TTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence                           1223567889999999999999999999863

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-41  Score=280.35  Aligned_cols=208  Identities=17%  Similarity=0.163  Sum_probs=167.5

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhh---hcCCCceeeeeeEEEe-----
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVH---VAHHKNLVCLLGYHIE-----   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~---~~~h~~iv~~~~~~~~-----   79 (266)
                      ++|++++.||+|+||+||+|.+...+++.||+|++.                .+++   ..+||||+++++++..     
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            489999999999999999999864557789999864                2333   4489999999999863     


Q ss_pred             CCeEEEEEEcCCCCCHHHHHhhcC-CC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceee
Q 042690           80 QECRLLVYKFMHNRSISSLLYECL-RP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLL  147 (266)
Q Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~-~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~  147 (266)
                      ....+++|||+.++++........ .+      .+..++..++.++|.++++|+     |||++.++.+||+|||+++..
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~  166 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY  166 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCC
T ss_pred             CceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhh
Confidence            246889999999876655444322 22      355677778888998888887     999999999999999999865


Q ss_pred             ccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC-------------------------
Q 042690          148 MINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS-------------------------  202 (266)
Q Consensus       148 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-------------------------  202 (266)
                      ..  ........||+.|+|||++.+.+++.++||||+||++|+|+||+.||....                         
T Consensus       167 ~~--~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  244 (305)
T d1blxa_         167 SF--QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVA  244 (305)
T ss_dssp             CG--GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCS
T ss_pred             cc--cccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhccccccc
Confidence            32  233445779999999999999999999999999999999999999996521                         


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                       .....+.+.+++.+||+.||.+|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         245 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             SCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                             1123456678999999999999999999875

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=278.57  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=177.7

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEc--CCCcceeeeeeHH------------------HHhhhcCC-CceeeeeeEEEeC
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLA--PGDKTNIGVKKLD------------------KVVHVAHH-KNLVCLLGYHIEQ   80 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~--~~~~~~vaiK~~~------------------~~l~~~~h-~~iv~~~~~~~~~   80 (266)
                      ++++|++++.||+|+||+||+|...  ..+++.||+|.+.                  +++++++| |||+++++++.+.
T Consensus        22 ~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~  101 (322)
T d1vzoa_          22 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE  101 (322)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET
T ss_pred             chhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC
Confidence            4578999999999999999999873  2468899999763                  37888876 8999999999999


Q ss_pred             CeEEEEEEcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           81 ECRLLVYKFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ...+++|||+.+++|.+++.......      +..++..++.++|..+++|+     ||+++.++.++|+|||+++....
T Consensus       102 ~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~  181 (322)
T d1vzoa_         102 TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA  181 (322)
T ss_dssp             TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCG
T ss_pred             CceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcc
Confidence            99999999999999999998766543      55667777888998888887     89999999999999999987755


Q ss_pred             ccccccccccCCCCcCCccccCCC--CCCcccchhhHHHHHHHHHhCCCcccCC-------------------CCccccc
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNM--PVTVKVDVYSFGVMLLEIISCRCVERQG-------------------SDPKTLE  208 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~Di~slG~i~~~l~tg~~p~~~~-------------------~~~~~~~  208 (266)
                      ..........|++.|++||.+.+.  .++.++|||||||++|+|+||+.||...                   .+...+.
T Consensus       182 ~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  261 (322)
T d1vzoa_         182 DETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSA  261 (322)
T ss_dssp             GGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCH
T ss_pred             cccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCH
Confidence            555555567789999999988654  3678999999999999999999999762                   1334667


Q ss_pred             hHHHHHHHhhhcCCCCCCC-----HHHHHH
Q 042690          209 KPVMIAIQFVKEKPPLRPS-----LRIVAL  233 (266)
Q Consensus       209 ~~~~l~~~cl~~~p~~Rps-----~~~il~  233 (266)
                      .+.+++.+||+.||.+|||     ++|+++
T Consensus       262 ~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         262 LAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             HHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             HHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            7889999999999999995     677764

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.2e-40  Score=274.46  Aligned_cols=207  Identities=18%  Similarity=0.203  Sum_probs=167.8

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++|.++++||+|+||+||+|.++  +++.||+|++.                .+++.++||||+++++++.+++..+++|
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~--~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN--YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET--TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeC--CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEE
Confidence            58999999999999999999985  77899999874                3788999999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |++.++.+..+......++      +..++..++.++|.++++|+     |||++.++.+|++|||.+..... ......
T Consensus        80 e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~-~~~~~~  158 (286)
T d1ob3a_          80 EHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI-PVRKYT  158 (286)
T ss_dssp             ECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-------
T ss_pred             EeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceeccc-Cccccc
Confidence            9998877777766555544      44566777788888888887     99999999999999999987542 222333


Q ss_pred             cccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------------
Q 042690          157 GMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------------  202 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------------  202 (266)
                      ...+++.|+|||.+.+. .++.++|||||||++|+|++|+.||....                                 
T Consensus       159 ~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  238 (286)
T d1ob3a_         159 HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNF  238 (286)
T ss_dssp             ---CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTC
T ss_pred             eecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhccccc
Confidence            45689999999988654 56899999999999999999999986411                                 


Q ss_pred             -----------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -----------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -----------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                 .+.....+.+++.+||+.||.+|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         239 TVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             CCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                       1223456778999999999999999999974

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=272.50  Aligned_cols=211  Identities=18%  Similarity=0.218  Sum_probs=165.9

Q ss_pred             ccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe------
Q 042690           22 SFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE------   79 (266)
Q Consensus        22 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~------   79 (266)
                      ++++|+++++||+|+||+||+|.+. .+++.||||++.                ++++.++||||+++++++..      
T Consensus         8 ~~~rY~i~~~LG~G~fg~Vy~a~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~   86 (318)
T d3blha1           8 EVSKYEKLAKIGQGTFGEVFKARHR-KTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN   86 (318)
T ss_dssp             BGGGEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC------
T ss_pred             ccCCEEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccc
Confidence            3679999999999999999999986 678899999864                37889999999999999854      


Q ss_pred             --CCeEEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCccee
Q 042690           80 --QECRLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKL  146 (266)
Q Consensus        80 --~~~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~  146 (266)
                        ++..++||||+.++.+..+.......      .+..++..++.++|..+++|+     |||++.++.++++|||+++.
T Consensus        87 ~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          87 RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             ----CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             ccCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeee
Confidence              34589999999886665554443333      345667777788888888887     99999999999999999976


Q ss_pred             ecccccc---ccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------c---
Q 042690          147 LMINQTQ---TLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------P---  204 (266)
Q Consensus       147 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------~---  204 (266)
                      .......   ......||+.|+|||.+.+. .+++++||||+||++|+|++|+.||.+...               +   
T Consensus       167 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  246 (318)
T d3blha1         167 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW  246 (318)
T ss_dssp             CCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred             cccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhc
Confidence            5422221   22235689999999988755 689999999999999999999999864110               0   


Q ss_pred             -----------------------------cccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          205 -----------------------------KTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       205 -----------------------------~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                   .....+.+++.+||+.||.+|||++|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         247 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence                                         01234567999999999999999999874

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.2e-38  Score=264.75  Aligned_cols=215  Identities=13%  Similarity=0.115  Sum_probs=176.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCC-CceeeeeeEEEeCCeEEEEEEcC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHH-KNLVCLLGYHIEQECRLLVYKFM   90 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h-~~iv~~~~~~~~~~~~~lv~e~~   90 (266)
                      ++|++.+.||+|+||+||+|++. .+++.||+|.+.            +.++.+.| +|++.+++++..+...++||||+
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~-~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~   83 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNL-LNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   83 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEET-TTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CceEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec
Confidence            37999999999999999999986 678899999764            36667765 89999999999999999999999


Q ss_pred             CCCCHHHHHhhcCC-CC------HHHHHHHHHHHhhhcCcccc-----ceeecC-----CCEEEEeecCcceeecccccc
Q 042690           91 HNRSISSLLYECLR-PT------WQQRMQDCIRDCWRTRALAC-----RILLHD-----YFTVETSDLGLAKLLMINQTQ  153 (266)
Q Consensus        91 ~~~~L~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~~h~-----nili~~-----~~~~~l~Dfg~a~~~~~~~~~  153 (266)
                       +++|.+++..... ++      +..++..++.++|..+++|+     ||+++.     ++.++|+|||+|+........
T Consensus        84 -~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (293)
T d1csna_          84 -GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  162 (293)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             -CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccc
Confidence             6799999876543 33      44556666788888888887     999974     578999999999876432221


Q ss_pred             ------ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------c
Q 042690          154 ------TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------P  204 (266)
Q Consensus       154 ------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~  204 (266)
                            ......||+.|||||++.+..++.++||||||+++|+|+||+.||.....                       +
T Consensus       163 ~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  242 (293)
T d1csna_         163 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCA  242 (293)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             cceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcC
Confidence                  22345799999999999999999999999999999999999999975221                       2


Q ss_pred             cccchHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          205 KTLEKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       205 ~~~~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ..+.++.+++..|+..+|.+||+.+.+.+.|+.+.+
T Consensus       243 ~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~  278 (293)
T d1csna_         243 GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  278 (293)
T ss_dssp             TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHH
Confidence            244568889999999999999999998888887754

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-39  Score=273.22  Aligned_cols=204  Identities=19%  Similarity=0.246  Sum_probs=163.0

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCC------
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQE------   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~------   81 (266)
                      +.|.++++||+|+||+||+|.++ .+++.||+|++.                ++++.++|||||++++++...+      
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDG-RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             SSEEEEEEC------CEEEEEET-TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CcEEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            57999999999999999999986 678999999875                3778999999999999997654      


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMIN  150 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~  150 (266)
                      .+++||||+ +.+|..+++. ..+      .+..++..++.++|.++++|+     |||++.++.++++|||+++...  
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~--  172 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKH-EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD--  172 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             eEEEEEecc-cccHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccC--
Confidence            479999999 5588887754 333      355677777888998888887     9999999999999999998753  


Q ss_pred             cccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC---------------------------
Q 042690          151 QTQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------  202 (266)
Q Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------  202 (266)
                        .......+|+.|+|||.+.+. .++.++||||+||++|+|++|+.||....                           
T Consensus       173 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (346)
T d1cm8a_         173 --SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDE  250 (346)
T ss_dssp             --SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHH
T ss_pred             --CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchh
Confidence              223456789999999988764 56899999999999999999999986521                           


Q ss_pred             -------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 -------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 -------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                         .......+.+++.+||..||.+|||++|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         251 AKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             HHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                               11234567789999999999999999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-38  Score=264.63  Aligned_cols=214  Identities=14%  Similarity=0.093  Sum_probs=168.8

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH------------HHhhhcCCCce-eeeeeEEEeCCeEEEEEEcCC
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD------------KVVHVAHHKNL-VCLLGYHIEQECRLLVYKFMH   91 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~------------~~l~~~~h~~i-v~~~~~~~~~~~~~lv~e~~~   91 (266)
                      +|++.+.||+|+||.||+|.+. .+++.||+|.+.            ++++.++|+++ +.+.++....+..++||||+.
T Consensus         8 rY~l~~~iG~G~fG~Vy~a~~~-~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_           8 RYRLGRKIGSGSFGDIYLGTDI-AAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEET-TTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEeEEEeeCCCcEEEEEEEC-CCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC
Confidence            6999999999999999999986 678899999754            48888887654 555565677788899999995


Q ss_pred             CCCHHHHHhhc-CCCC------HHHHHHHHHHHhhhcCcccc-----ceeec---CCCEEEEeecCcceeecccccc---
Q 042690           92 NRSISSLLYEC-LRPT------WQQRMQDCIRDCWRTRALAC-----RILLH---DYFTVETSDLGLAKLLMINQTQ---  153 (266)
Q Consensus        92 ~~~L~~~l~~~-~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~---~~~~~~l~Dfg~a~~~~~~~~~---  153 (266)
                       ++|.+.+... ..++      +..++..++.++|..+++|+     ||+++   .+..++++|||+|+........   
T Consensus        87 -~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~  165 (299)
T d1ckia_          87 -PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHI  165 (299)
T ss_dssp             -CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBC
T ss_pred             -CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccce
Confidence             4777766543 3343      44556666688888888887     89875   4557999999999986533221   


Q ss_pred             ---ccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------cccc
Q 042690          154 ---TLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------PKTL  207 (266)
Q Consensus       154 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------~~~~  207 (266)
                         ......||+.|||||.+.+.+++.++|||||||++|||+||+.||.....                       ...+
T Consensus       166 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  245 (299)
T d1ckia_         166 PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYP  245 (299)
T ss_dssp             CCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSC
T ss_pred             eccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCC
Confidence               22346799999999999999999999999999999999999999975211                       2244


Q ss_pred             chHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 042690          208 EKPVMIAIQFVKEKPPLRPSLRIVALMLQSILE  240 (266)
Q Consensus       208 ~~~~~l~~~cl~~~p~~Rps~~~il~~l~~~~~  240 (266)
                      ..+.+++..||+.+|.+||+++++.+.|+.+..
T Consensus       246 ~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         246 SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             HHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence            667889999999999999999999988887743

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=270.61  Aligned_cols=210  Identities=18%  Similarity=0.211  Sum_probs=165.4

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH---------------HHhhhcCCCceeeeeeEEEeCC----eEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD---------------KVVHVAHHKNLVCLLGYHIEQE----CRL   84 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~---------------~~l~~~~h~~iv~~~~~~~~~~----~~~   84 (266)
                      ++|.+++.||+|+||+||+|.++ .+++.||+|++.               .+++.++||||+++++++....    ..+
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDN-VNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEET-TTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCeEEEEEEeeccCeEEEEEEEC-CCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            36999999999999999999975 678899999864               3888999999999999987643    234


Q ss_pred             EEEEcCCCCCHHHHHhhcCC-----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccccc-
Q 042690           85 LVYKFMHNRSISSLLYECLR-----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQ-  153 (266)
Q Consensus        85 lv~e~~~~~~L~~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~-  153 (266)
                      ++++++.+++|.+++....-     ..+..++..++.++|.++++|+     |||++.++.+||+|||++......... 
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~  166 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT  166 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccc
Confidence            45566778999999975321     2355667777788888888887     999999999999999999876433222 


Q ss_pred             -ccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          154 -TLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       154 -~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                       ......||+.|+|||.+.. ..++.++||||+||++|+|++|+.||....                             
T Consensus       167 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T d1pmea_         167 GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKAR  246 (345)
T ss_dssp             CTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHH
T ss_pred             eeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhh
Confidence             2344678999999998754 457889999999999999999999986521                             


Q ss_pred             -----------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          203 -----------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       203 -----------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                       .+.....+.+++.+||+.||.+|||++++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         247 NYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             HHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             cccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                             11223467899999999999999999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-39  Score=273.07  Aligned_cols=211  Identities=18%  Similarity=0.202  Sum_probs=168.5

Q ss_pred             ceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------HHhhhcCCCceeeeeeEEEeC------CeEEEEEE
Q 042690           25 HIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------KVVHVAHHKNLVCLLGYHIEQ------ECRLLVYK   88 (266)
Q Consensus        25 ~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------~~l~~~~h~~iv~~~~~~~~~------~~~~lv~e   88 (266)
                      +|...+.||+|+||+||+|+++ .+++.||||++.          .+++.++||||+++++++...      ..+++|||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~-~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~E   99 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLC-DSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD   99 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEET-TTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEEC-CCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEe
Confidence            7899999999999999999986 678899999875          488999999999999998643      24789999


Q ss_pred             cCCCCCHHHHHh----hcCCCC------HHHHHHHHHHHhhhcCcccc-----ceeecCCC-EEEEeecCcceeeccccc
Q 042690           89 FMHNRSISSLLY----ECLRPT------WQQRMQDCIRDCWRTRALAC-----RILLHDYF-TVETSDLGLAKLLMINQT  152 (266)
Q Consensus        89 ~~~~~~L~~~l~----~~~~~~------~~~~l~~~~~~~~~~~~~h~-----nili~~~~-~~~l~Dfg~a~~~~~~~~  152 (266)
                      ||.++ +.+.+.    ....++      +..++..++.++|.++++|+     |||++.++ .+||+|||++.....  .
T Consensus       100 y~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~--~  176 (350)
T d1q5ka_         100 YVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR--G  176 (350)
T ss_dssp             CCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCT--T
T ss_pred             ccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccC--C
Confidence            99864 443332    233333      56678888899999998888     99999775 899999999987643  2


Q ss_pred             cccccccCCCCcCCccccCC-CCCCcccchhhHHHHHHHHHhCCCcccCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRN-MPVTVKVDVYSFGVMLLEIISCRCVERQGS-----------------------------  202 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~-~~~~~~~Di~slG~i~~~l~tg~~p~~~~~-----------------------------  202 (266)
                      .......|+..|+|||.+.+ ..++.++||||+||++|||++|+.||....                             
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  256 (350)
T d1q5ka_         177 EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE  256 (350)
T ss_dssp             SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---C
T ss_pred             cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhh
Confidence            33345678999999997764 468999999999999999999999986421                             


Q ss_pred             ---------------CccccchHHHHHHHhhhcCCCCCCCHHHHHHH--HHHHH
Q 042690          203 ---------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVALM--LQSIL  239 (266)
Q Consensus       203 ---------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~--l~~~~  239 (266)
                                     .+...+.+.+++.+||+.||.+|||+.|+++.  ++...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         257 FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             CCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             ccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence                           11234567889999999999999999999853  44443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=264.58  Aligned_cols=208  Identities=17%  Similarity=0.194  Sum_probs=172.2

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeCCeEEEEE
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      .+|+++++||+|+||+||+|.+. .+++.||+|++.                .+++.++||||+++++++.+....++||
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~-~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~   80 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNR-ETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEET-TTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEEC-CCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEe
Confidence            58999999999999999999986 678899999863                3778899999999999999999999999


Q ss_pred             EcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccccccc
Q 042690           88 KFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQTQTLT  156 (266)
Q Consensus        88 e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~~~~~  156 (266)
                      |++.+++|..++...+..      .+..++..++.++|.++++|+     |||++.++.+||+|||.++..... .....
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~-~~~~~  159 (292)
T d1unla_          81 EFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIP-VRCYS  159 (292)
T ss_dssp             ECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSC-CSCCC
T ss_pred             eeccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCC-Cccce
Confidence            999999998888766554      355667777788888888886     999999999999999999876432 22333


Q ss_pred             cccCCCCcCCccccCCCC-CCcccchhhHHHHHHHHHhCCCcccCCC---------------------------------
Q 042690          157 GMRETKGYLPPEWFRNMP-VTVKVDVYSFGVMLLEIISCRCVERQGS---------------------------------  202 (266)
Q Consensus       157 ~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~i~~~l~tg~~p~~~~~---------------------------------  202 (266)
                      ...++..|+|||.+.+.. ++.++||||+||++|+|++|+.||....                                 
T Consensus       160 ~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (292)
T d1unla_         160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY  239 (292)
T ss_dssp             SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCC
T ss_pred             eeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccccccc
Confidence            455678899999877654 6899999999999999999998864311                                 


Q ss_pred             ------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                  .+.....+.+++.+||+.||.+|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         240 PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                        1122356778999999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=1.6e-38  Score=268.22  Aligned_cols=210  Identities=16%  Similarity=0.206  Sum_probs=170.0

Q ss_pred             cccCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcC-CCceeeeeeEEEeC--CeEEEE
Q 042690           21 GSFSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAH-HKNLVCLLGYHIEQ--ECRLLV   86 (266)
Q Consensus        21 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~-h~~iv~~~~~~~~~--~~~~lv   86 (266)
                      ++..+|+++++||+|+||+||+|++. .+++.||+|++.           .+++.++ ||||+++++++...  ...++|
T Consensus        32 ~~~d~y~i~~~LG~G~fg~V~~a~~~-~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          32 GNQDDYQLVRKLGRGKYSEVFEAINI-TNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             CCCcCeEEEEEEecCcCeEEEEEEEC-CCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            45678999999999999999999976 678999999755           3777885 99999999999854  468999


Q ss_pred             EEcCCCCCHHHHHhhcC---CCCHHHHHHHHHHHhhhcCcccc-----ceeecCC-CEEEEeecCcceeecccccccccc
Q 042690           87 YKFMHNRSISSLLYECL---RPTWQQRMQDCIRDCWRTRALAC-----RILLHDY-FTVETSDLGLAKLLMINQTQTLTG  157 (266)
Q Consensus        87 ~e~~~~~~L~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~-~~~~l~Dfg~a~~~~~~~~~~~~~  157 (266)
                      ||||.+++|.++.+...   ...+..++..++.++|.++++|+     |||++.+ +.++|+|||+|.....  ......
T Consensus       111 ~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~--~~~~~~  188 (328)
T d3bqca1         111 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP--GQEYNV  188 (328)
T ss_dssp             EECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCT--TCCCCS
T ss_pred             EeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccC--CCcccc
Confidence            99999999987654211   13466777888899998888887     9999865 5799999999987642  223345


Q ss_pred             ccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCCC---------------------------------
Q 042690          158 MRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGSD---------------------------------  203 (266)
Q Consensus       158 ~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~~---------------------------------  203 (266)
                      ..+|+.|+|||.+.+. .++.++||||+||++++|++|+.||.....                                 
T Consensus       189 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~  268 (328)
T d3bqca1         189 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFN  268 (328)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGG
T ss_pred             cccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccc
Confidence            6789999999987765 479999999999999999999998864211                                 


Q ss_pred             --------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          204 --------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       204 --------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                          ....+.+.+++.+||..||.+|||++|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         269 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             GTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                                112345788999999999999999999975

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-38  Score=267.77  Aligned_cols=207  Identities=19%  Similarity=0.202  Sum_probs=159.1

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEe------CC
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIE------QE   81 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~------~~   81 (266)
                      .+|++++.||+|+||+||+|.+. .+++.||+|++.                .+++.++||||+++++++..      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~-~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDA-VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEET-TTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             CCeEEEEEeecCcCeEEEEEEEC-CCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence            57999999999999999999986 678999999874                37789999999999999864      35


Q ss_pred             eEEEEEEcCCCCCHHHHHhhcCC----CCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeeccccc
Q 042690           82 CRLLVYKFMHNRSISSLLYECLR----PTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQT  152 (266)
Q Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~~  152 (266)
                      ..|+|||||.+ ++.+.+...-.    ..+..++..++.++|+.+++|+     |||++.++.++++|||+++....  .
T Consensus        96 ~~~iv~Ey~~~-~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~--~  172 (355)
T d2b1pa1          96 DVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--S  172 (355)
T ss_dssp             EEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------
T ss_pred             eeEEEEeccch-HHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccc--c
Confidence            78999999977 45555543211    3456777788899998888888     99999999999999999887542  3


Q ss_pred             cccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCCC-----------------------------
Q 042690          153 QTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGSD-----------------------------  203 (266)
Q Consensus       153 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~~-----------------------------  203 (266)
                      .......+|+.|+|||.+.+..+++++||||+||++++|++|+.||.....                             
T Consensus       173 ~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  252 (355)
T d2b1pa1         173 FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNY  252 (355)
T ss_dssp             --------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHH
T ss_pred             cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHH
Confidence            333456689999999999999999999999999999999999999864210                             


Q ss_pred             ----------------------------ccccchHHHHHHHhhhcCCCCCCCHHHHHHH
Q 042690          204 ----------------------------PKTLEKPVMIAIQFVKEKPPLRPSLRIVALM  234 (266)
Q Consensus       204 ----------------------------~~~~~~~~~l~~~cl~~~p~~Rps~~~il~~  234 (266)
                                                  ...+..+.+++.+||..||.+|||++|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         253 VENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                                        0123456789999999999999999999854

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=263.95  Aligned_cols=204  Identities=15%  Similarity=0.187  Sum_probs=164.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH----------------HHhhhcCCCceeeeeeEEEeC-----Ce
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD----------------KVVHVAHHKNLVCLLGYHIEQ-----EC   82 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~----------------~~l~~~~h~~iv~~~~~~~~~-----~~   82 (266)
                      ++|.++++||+|+||+||+|++. .+++.||||++.                .+++.++|||++++++++...     ..
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~-~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDT-KTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEET-TTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCeEEEEEEecCCCeEEEEEEEC-CCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            47999999999999999999976 678999999864                378899999999999998643     23


Q ss_pred             EEEEEEcCCCCCHHHHHhhcCCC------CHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecccc
Q 042690           83 RLLVYKFMHNRSISSLLYECLRP------TWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMINQ  151 (266)
Q Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~------~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~~~  151 (266)
                      .+++|+|+.+|+|.+++... ++      .+..++..++.++|.++++|+     |||++.++.++++|||++....   
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~-~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~---  172 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ-KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---  172 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCT---
T ss_pred             eEEEEEeecCCchhhhcccc-cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccC---
Confidence            46677788899999999643 33      355677777899998888888     9999999999999999997643   


Q ss_pred             ccccccccCCCCcCCccccCCC-CCCcccchhhHHHHHHHHHhCCCcccCCC----------------------------
Q 042690          152 TQTLTGMRETKGYLPPEWFRNM-PVTVKVDVYSFGVMLLEIISCRCVERQGS----------------------------  202 (266)
Q Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~i~~~l~tg~~p~~~~~----------------------------  202 (266)
                       .......|++.|+|||...+. .++.++|||||||++|+|++|+.||.+..                            
T Consensus       173 -~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  251 (348)
T d2gfsa1         173 -DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESA  251 (348)
T ss_dssp             -GGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHH
T ss_pred             -cccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhh
Confidence             233456689999999986665 46889999999999999999999986521                            


Q ss_pred             ------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 ------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 ------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                        .......+.+++.+||+.||.+|||++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         252 RNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             HHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                              0123456788999999999999999999986

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-32  Score=234.59  Aligned_cols=205  Identities=16%  Similarity=0.152  Sum_probs=152.3

Q ss_pred             CceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH-------------HHhhhc-----------CCCceeeeeeEEEe
Q 042690           24 SHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD-------------KVVHVA-----------HHKNLVCLLGYHIE   79 (266)
Q Consensus        24 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~-------------~~l~~~-----------~h~~iv~~~~~~~~   79 (266)
                      ++|+++++||+|+||+||+|++. .+++.||||++.             ++++.+           .|+||+++++++..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~-~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDM-VNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEET-TTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEEC-CCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            35999999999999999999976 678999999854             233333           47899999999864


Q ss_pred             --CCeEEEEEEcCCCCCH-HHHHhhc--CCC------CHHHHHHHHHHHhhh-cCcccc-----ceeecCCC------EE
Q 042690           80 --QECRLLVYKFMHNRSI-SSLLYEC--LRP------TWQQRMQDCIRDCWR-TRALAC-----RILLHDYF------TV  136 (266)
Q Consensus        80 --~~~~~lv~e~~~~~~L-~~~l~~~--~~~------~~~~~l~~~~~~~~~-~~~~h~-----nili~~~~------~~  136 (266)
                        ....+++|+++..+.. .......  ...      .+..++..++.++|+ ++++|+     |||++.++      .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccccee
Confidence              3456677776655433 2322222  222      244556666667776 667776     99998664      48


Q ss_pred             EEeecCcceeeccccccccccccCCCCcCCccccCCCCCCcccchhhHHHHHHHHHhCCCcccCCC--------------
Q 042690          137 ETSDLGLAKLLMINQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGVMLLEIISCRCVERQGS--------------  202 (266)
Q Consensus       137 ~l~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i~~~l~tg~~p~~~~~--------------  202 (266)
                      +++|||.+....    .......+|+.|+|||++.+..++.++|+||+||++++|++|+.||....              
T Consensus       172 kl~dfg~s~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~  247 (362)
T d1q8ya_         172 KIADLGNACWYD----EHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI  247 (362)
T ss_dssp             EECCCTTCEETT----BCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHH
T ss_pred             eEeecccccccc----cccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHH
Confidence            999999998643    22345668999999999998899999999999999999999999986411              


Q ss_pred             -------------------------------------------------CccccchHHHHHHHhhhcCCCCCCCHHHHHH
Q 042690          203 -------------------------------------------------DPKTLEKPVMIAIQFVKEKPPLRPSLRIVAL  233 (266)
Q Consensus       203 -------------------------------------------------~~~~~~~~~~l~~~cl~~~p~~Rps~~~il~  233 (266)
                                                                       .......+.+++.+||+.||.+|||++|+++
T Consensus       248 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         248 IELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             HHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                                                             0122355778999999999999999999986

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=2.8e-15  Score=115.18  Aligned_cols=148  Identities=7%  Similarity=-0.026  Sum_probs=98.4

Q ss_pred             eeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------------------------HHhhhcCCCceeeee
Q 042690           27 YSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------------------------KVVHVAHHKNLVCLL   74 (266)
Q Consensus        27 ~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------------------------~~l~~~~h~~iv~~~   74 (266)
                      .+.++||+|+||+||+|...  +++.||+|...                                ..+..+.|.+++..+
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~--~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSE--KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEET--TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             hhCCEeeeCcceEEEEEECC--CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            46789999999999999974  68899999632                                245677888888877


Q ss_pred             eEEEeCCeEEEEEEcCCCCCHHHHHhhcCCCCHHHHHHHHHHHhhhcCcccc-----ceeecCCCEEEEeecCcceeecc
Q 042690           75 GYHIEQECRLLVYKFMHNRSISSLLYECLRPTWQQRMQDCIRDCWRTRALAC-----RILLHDYFTVETSDLGLAKLLMI  149 (266)
Q Consensus        75 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~l~~~~~~~~~~~~~h~-----nili~~~~~~~l~Dfg~a~~~~~  149 (266)
                      ++.  .  .+++|||+++..+.++- ......+..++..++.++|.++++|+     |||++++ .++|+|||.|....+
T Consensus        81 ~~~--~--~~lvme~~~~~~~~~l~-~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~  154 (191)
T d1zara2          81 AWE--G--NAVLMELIDAKELYRVR-VENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGE  154 (191)
T ss_dssp             EEE--T--TEEEEECCCCEEGGGCC-CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTS
T ss_pred             Eec--C--CEEEEEeeccccccchh-hHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCC
Confidence            653  2  36999999886554422 22223566778888888888888777     9999965 488999999976542


Q ss_pred             ccccccccccCCCCcCCccccCCCCCCcccchhhHHH
Q 042690          150 NQTQTLTGMRETKGYLPPEWFRNMPVTVKVDVYSFGV  186 (266)
Q Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  186 (266)
                      +........  ....+ .+ .....++..+|+||+.-
T Consensus       155 ~~~~~~l~r--d~~~~-~~-~f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         155 EGWREILER--DVRNI-IT-YFSRTYRTEKDINSAID  187 (191)
T ss_dssp             TTHHHHHHH--HHHHH-HH-HHHHHHCCCCCHHHHHH
T ss_pred             CCcHHHHHH--HHHHH-HH-HHcCCCCCcccHHHHHH
Confidence            222111000  00000 01 11234677899999653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.27  E-value=0.00084  Score=51.99  Aligned_cols=73  Identities=16%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             cCceeeeeccCCCcceEEEEEEEcCCCcceeeeeeHH--------------HHhhhcC-CCceeeeeeEEEeCCeEEEEE
Q 042690           23 FSHIYSLKKPCGGSFSTVYTGVLAPGDKTNIGVKKLD--------------KVVHVAH-HKNLVCLLGYHIEQECRLLVY   87 (266)
Q Consensus        23 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~vaiK~~~--------------~~l~~~~-h~~iv~~~~~~~~~~~~~lv~   87 (266)
                      ++.|...+..+.++.+.||+...   ++..+.+|+..              ..++.+. +--+.+++++...++..++||
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~---~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~   89 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVG---ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEEC---SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             hhceEEEEcCCCCCCCcEEEEEe---CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEE
Confidence            45677777766677789998873   55566676653              1333332 323567778888888899999


Q ss_pred             EcCCCCCHHHH
Q 042690           88 KFMHNRSISSL   98 (266)
Q Consensus        88 e~~~~~~L~~~   98 (266)
                      ++.+|.++.+.
T Consensus        90 ~~l~G~~~~~~  100 (263)
T d1j7la_          90 SEADGVLCSEE  100 (263)
T ss_dssp             ECCSSEEHHHH
T ss_pred             Eeccccccccc
Confidence            99998776543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.41  E-value=0.028  Score=42.61  Aligned_cols=63  Identities=11%  Similarity=-0.014  Sum_probs=40.2

Q ss_pred             ccCCCc-ceEEEEEEEcCCCcceeeeeeHH-----------HHhhhcCC--CceeeeeeEEEeCCeEEEEEEcCCCCCH
Q 042690           31 KPCGGS-FSTVYTGVLAPGDKTNIGVKKLD-----------KVVHVAHH--KNLVCLLGYHIEQECRLLVYKFMHNRSI   95 (266)
Q Consensus        31 ~ig~G~-~g~V~~~~~~~~~~~~vaiK~~~-----------~~l~~~~h--~~iv~~~~~~~~~~~~~lv~e~~~~~~L   95 (266)
                      .+..|. ...||+...  ..+..+.+|.-.           ..++.+..  --+.+++.+..+++..++||++++|.++
T Consensus        17 ~~~~G~s~~~v~r~~~--~~~~~~vlK~~~~~~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSA--QGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEEC--TTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEe--CCCCEEEEEeCCccCHhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            555555 467888875  355556666443           34443332  2356678877888889999999987544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=94.74  E-value=0.1  Score=42.53  Aligned_cols=62  Identities=10%  Similarity=0.052  Sum_probs=37.2

Q ss_pred             eeccCCCcceEEEEEEEcCCCcceeeeee---------------------HHHHhhhcC-C--CceeeeeeEEEeCCeEE
Q 042690           29 LKKPCGGSFSTVYTGVLAPGDKTNIGVKK---------------------LDKVVHVAH-H--KNLVCLLGYHIEQECRL   84 (266)
Q Consensus        29 ~~~ig~G~~g~V~~~~~~~~~~~~vaiK~---------------------~~~~l~~~~-h--~~iv~~~~~~~~~~~~~   84 (266)
                      .+.||.|....||++... ..++.+.+|.                     +.+.++.+. +  ..+.+++.+  ++...+
T Consensus        31 ~~eig~G~~N~vfrV~~~-~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~  107 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQ-EHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  107 (392)
T ss_dssp             EEECCSSSSEEEEEEEC-----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEeCCCceEeEEEEEeC-CCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCE
Confidence            568999999999999854 3345566652                     112444332 2  345555554  445567


Q ss_pred             EEEEcCCCC
Q 042690           85 LVYKFMHNR   93 (266)
Q Consensus        85 lv~e~~~~~   93 (266)
                      +|||++.+.
T Consensus       108 lvmE~L~~~  116 (392)
T d2pula1         108 TVMEDLSHL  116 (392)
T ss_dssp             EEECCCTTS
T ss_pred             EEEeccCCc
Confidence            999999763