Citrus Sinensis ID: 042738

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSFMF
Secondary Structure (PSIPRED)
cccccEEEEcccccccccccccHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHEEEccHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEHHEEEcHHHccHcHHEEHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maganvlatgpfsggsmnpacafgsavvagsfknqavywvGPLFGAAVAGLVYDIVVFPaqvqdsiagvsdgiggtqrREVVRNINTIDMSKMYVLVCLIDDLSFMF
Flexible Loop (DISEMBL)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIagvsdgiggtqrrEVVRNintidmskmyVLVCLIDDLSFMF
Low Complexity Region (SEG)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSFMF
Disordered region (IsUnstruct)
*****************NPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSF**
Disordered Region (DISOPRED)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVF**************************************VCLIDDLSFMF
Disordered Region (DISEMBL)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSFMF
Disordered Region (DISPRO)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ**IAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSFMF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSIAGVSDGIGGTQRREVVRNINTIDMSKMYVLVCLIDDLSFMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9STX9	256	Probable aquaporin TIP5-1	yes	no	0.682	0.285	0.716	1e-21
Q9ATL2	260	Aquaporin TIP5-1 OS=Zea m	N/A	no	0.542	0.223	0.655	4e-14
Q41975	250	Probable aquaporin TIP2-2	no	no	0.495	0.212	0.660	2e-13
Q41951	250	Aquaporin TIP2-1 OS=Arabi	no	no	0.495	0.212	0.660	2e-13
Q7XA61	248	Probable aquaporin TIP2-1	no	no	0.476	0.205	0.679	2e-13
Q7XU31	269	Probable aquaporin TIP5-1	no	no	0.532	0.211	0.631	2e-13
Q9ATM0	254	Aquaporin TIP1-2 OS=Zea m	N/A	no	0.420	0.177	0.666	2e-13
Q9ATL3	252	Aquaporin TIP4-4 OS=Zea m	N/A	no	0.485	0.206	0.692	2e-13
Q84RL6	248	Aquaporin TIP2-3 OS=Zea m	N/A	no	0.476	0.205	0.679	2e-13
Q9ATL9	249	Aquaporin TIP2-1 OS=Zea m	N/A	no	0.476	0.204	0.679	3e-13

>sp|Q9STX9|TIP51_ARATH Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGANVLA GPFSGGSMNPACAFGSA+V GSFKNQAVYWVGPL G A A LVYD VV P 
Sbjct: 183 VAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYDNVVVPV 242

Query: 61  QVQDSIAGVSDGIG 74
           +  D  +   D IG
Sbjct: 243 E-DDRGSSTGDAIG 255

Potential aquaporin, which may facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ATL2|TIP51_MAIZE Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           GA VLA G  +G SMNPA +FG AVV+G FKNQAVYW GP+ GAAVA LVY I+  P+
Sbjct: 193 GAFVLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVYQIMACPS 250

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

>sp|Q41975|TIP22_ARATH Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 42/53 (79%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AVV+G F    +YWVGPL G A+AGL+Y
Sbjct: 180 IVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIY 232

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41951|TIP21_ARATH Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AV AG F    VYWVGPL G  +AGL+Y
Sbjct: 180 IVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIY 232

Aquaporin required to facilitate the transport of water from the vacuolar compartment to the cytoplasm. Does not promote glycerol permability. Its function is impaired by Hg(2+). Transports urea in yeast cells and Xenopus laevis oocytes in a pH-independent manner. Transports methylammonium or ammonium in yeast cells and Xenopus laevis oocytes, preferentially at high medium pH. May participate in vacuolar compartmentation and detoxification of ammonium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA61|TIP21_ORYSJ Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 41/53 (77%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AV AG+F    VYWVGPL G  +AGLVY
Sbjct: 179 IVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVY 231

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XU31|TIP51_ORYSJ Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 43/57 (75%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           GA VLA G  +G SMNPA +FG AVV+G + NQAVYW GP+ GAAVA LV+  +VFP
Sbjct: 188 GACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQALVFP 244

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. May be involved in transport from the vacuolar compartment to the cytoplasm.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ATM0|TIP12_MAIZE Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIV 56
           GAN+LA G F G SMNPA +FG AVV G ++N  VYWVGPL GAA+A LVYDI+
Sbjct: 184 GANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAGAAIAALVYDII 237

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

>sp|Q9ATL3|TIP44_MAIZE Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYD 54
           GANVLA GPFSG SMNPA +FG A+VAG + +  VYWVGPL G  +AGLVYD
Sbjct: 182 GANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYD 233

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

>sp|Q84RL6|TIP23_MAIZE Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 41/53 (77%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AV AG+F    VYWVGPL G  +AGLVY
Sbjct: 179 IVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVY 231

Water channel required to facilitate the transport of water across cell membrane.

Zea mays (taxid: 4577)

>sp|Q9ATL9|TIP21_MAIZE Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 40/53 (75%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AV AG F    VYWVGPL G  +AGLVY
Sbjct: 179 IVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWVGPLVGGGLAGLVY 231

Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
255539793	252	tonoplast intrinsic protein, putative [R	0.691	0.293	0.851	3e-28
357450941	214	Aquaporin MIP family [Medicago truncatul	0.672	0.336	0.75	1e-23
449451958	255	PREDICTED: probable aquaporin TIP5-1-lik	0.682	0.286	0.753	1e-23
224139216	241	aquaporin, MIP family [Populus trichocar	0.570	0.253	0.868	5e-23
356529840	252	PREDICTED: probable aquaporin TIP5-1-lik	0.644	0.273	0.739	6e-23
356544312	256	PREDICTED: LOW QUALITY PROTEIN: probable	0.644	0.269	0.753	8e-23
224074647	241	aquaporin, MIP family, TIP subfamily [Po	0.560	0.248	0.85	1e-21
297815914	256	TIP5_1 [Arabidopsis lyrata subsp. lyrata	0.682	0.285	0.729	2e-20
15232798	256	putative aquaporin TIP5-1 [Arabidopsis t	0.682	0.285	0.716	4e-20
147827528	416	hypothetical protein VITISV_031107 [Viti	0.570	0.146	0.737	2e-19

>gi|255539793|ref|XP_002510961.1| tonoplast intrinsic protein, putative [Ricinus communis] gi|223550076|gb|EEF51563.1| tonoplast intrinsic protein, putative [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 66/74 (89%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           MAGANVLA GPFSGGSMNPACAFGSAVVAG FKNQAVYWVGPL GA VAGL+YD VVFP 
Sbjct: 178 MAGANVLAAGPFSGGSMNPACAFGSAVVAGRFKNQAVYWVGPLLGATVAGLLYDNVVFPN 237

Query: 61  QVQDSIAGVSDGIG 74
           QV DSI G+SDG+G
Sbjct: 238 QVPDSIRGISDGVG 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450941|ref|XP_003595747.1| Aquaporin MIP family [Medicago truncatula] gi|355484795|gb|AES65998.1| Aquaporin MIP family [Medicago truncatula]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGA+VLA GPFSGGS+NPACAFGSA +AG+F+NQAVYWVGPL GA VAGL+YD V+FP+
Sbjct: 139 IAGASVLAAGPFSGGSINPACAFGSASIAGTFRNQAVYWVGPLIGAVVAGLLYDNVLFPS 198

Query: 61  QVQDSIAGVSDG 72
           Q  D I GVSDG
Sbjct: 199 QNSDCIRGVSDG 210

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451958|ref|XP_004143727.1| PREDICTED: probable aquaporin TIP5-1-like [Cucumis sativus] gi|449488701|ref|XP_004158146.1| PREDICTED: probable aquaporin TIP5-1-like [Cucumis sativus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/73 (75%), Positives = 64/73 (87%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGANVLA GPFSGGS+NPACAFGSA+VAGSFKNQAVYWVGPL GAA+AG+V+D VVFP 
Sbjct: 181 IAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPI 240

Query: 61  QVQDSIAGVSDGI 73
           +  DS  GVS+ +
Sbjct: 241 ENVDSFRGVSEAV 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139216|ref|XP_002326797.1| aquaporin, MIP family [Populus trichocarpa] gi|222834119|gb|EEE72596.1| aquaporin, MIP family [Populus trichocarpa]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 56/61 (91%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           MAGANVLA GPFSGGSMNPACAFGSAV+AG FKNQAVYWVGPL GA+VAGL+YD VVFP 
Sbjct: 181 MAGANVLAAGPFSGGSMNPACAFGSAVIAGKFKNQAVYWVGPLIGASVAGLLYDNVVFPT 240

Query: 61  Q 61
           Q
Sbjct: 241 Q 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529840|ref|XP_003533495.1| PREDICTED: probable aquaporin TIP5-1-like [Glycine max]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 62/69 (89%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGA+VLA+GPFSGGSMNPACAFGSA +AGSF+NQAVYWVGPL GA +AGL+YD V+F +
Sbjct: 182 IAGASVLASGPFSGGSMNPACAFGSAAIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRS 241

Query: 61  QVQDSIAGV 69
           Q+ DSI G+
Sbjct: 242 QLTDSIQGI 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544312|ref|XP_003540597.1| PREDICTED: LOW QUALITY PROTEIN: probable aquaporin TIP5-1-like [Glycine max]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 60/69 (86%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           MAGA+VLAT PFSGGSMNPACAFGSA +AGSF+NQAVYWVGPL GA +AGL+YD V+F +
Sbjct: 186 MAGASVLATAPFSGGSMNPACAFGSAAIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRS 245

Query: 61  QVQDSIAGV 69
           Q  DSI G+
Sbjct: 246 QPTDSIQGI 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074647|ref|XP_002304406.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa] gi|222841838|gb|EEE79385.1| aquaporin, MIP family, TIP subfamily [Populus trichocarpa]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/60 (85%), Positives = 54/60 (90%)

Query: 2   AGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ 61
           AGANVLA GPFSGGSMNPACAFGSAV+AG  KNQAVYWVGPL GAAVAGL+YD VVFP +
Sbjct: 182 AGANVLAAGPFSGGSMNPACAFGSAVIAGRLKNQAVYWVGPLIGAAVAGLLYDNVVFPTE 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815914|ref|XP_002875840.1| TIP5_1 [Arabidopsis lyrata subsp. lyrata] gi|297321678|gb|EFH52099.1| TIP5_1 [Arabidopsis lyrata subsp. lyrata]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/74 (72%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGANVLA GPFSGGSMNPACAFGSA+V GSFKNQAVYWVGPL G A A LVYD VV PA
Sbjct: 183 VAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYDNVVVPA 242

Query: 61  QVQDSIAGVSDGIG 74
           +  D  +   D IG
Sbjct: 243 E-DDRGSSTGDAIG 255

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232798|ref|NP_190328.1| putative aquaporin TIP5-1 [Arabidopsis thaliana] gi|32363432|sp|Q9STX9.1|TIP51_ARATH RecName: Full=Probable aquaporin TIP5-1; AltName: Full=Tonoplast intrinsic protein 5-1; Short=AtTIP5;1 gi|5541711|emb|CAB51216.1| aquaporin-like protein [Arabidopsis thaliana] gi|332644760|gb|AEE78281.1| putative aquaporin TIP5-1 [Arabidopsis thaliana]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGANVLA GPFSGGSMNPACAFGSA+V GSFKNQAVYWVGPL G A A LVYD VV P 
Sbjct: 183 VAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYDNVVVPV 242

Query: 61  QVQDSIAGVSDGIG 74
           +  D  +   D IG
Sbjct: 243 E-DDRGSSTGDAIG 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827528|emb|CAN73028.1| hypothetical protein VITISV_031107 [Vitis vinifera]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 53/61 (86%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           + GANVLA GPF+GGSMNPA +FGSA+V G+FKNQAVYWVGPL G A+AGL+Y+ VVFP 
Sbjct: 347 IEGANVLAAGPFTGGSMNPASSFGSALVGGTFKNQAVYWVGPLIGGALAGLLYENVVFPP 406

Query: 61  Q 61
           Q
Sbjct: 407 Q 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2099595	256	TIP5;1 "tonoplast intrinsic pr	0.682	0.285	0.716	4.8e-23
TAIR|locus:2130883	250	TIP2;2 "tonoplast intrinsic pr	0.532	0.228	0.620	1.6e-15
TAIR|locus:2094977	250	DELTA-TIP "delta tonoplast int	0.495	0.212	0.660	2.6e-15
TAIR|locus:2168953	250	TIP2;3 "tonoplast intrinsic pr	0.532	0.228	0.603	6.9e-15
TAIR|locus:2088867	253	TIP2 "tonoplast intrinsic prot	0.616	0.260	0.5	4.9e-14
TAIR|locus:2057906	251	GAMMA-TIP "gamma tonoplast int	0.514	0.219	0.581	1e-13
TAIR|locus:2197279	268	TIP3;1 [Arabidopsis thaliana (	0.570	0.227	0.508	1.6e-13
TAIR|locus:2030968	267	BETA-TIP "beta-tonoplast intri	0.560	0.224	0.5	2.1e-13
TAIR|locus:2043505	249	TIP4;1 "tonoplast intrinsic pr	0.532	0.228	0.543	5.6e-13
TAIR|locus:2116987	252	TIP1;3 "tonoplast intrinsic pr	0.523	0.222	0.553	9.1e-13

TAIR|locus:2099595 TIP5;1 "tonoplast intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/74 (71%), Positives = 57/74 (77%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
             +AGANVLA GPFSGGSMNPACAFGSA+V GSFKNQAVYWVGPL G A A LVYD VV P 
Sbjct:   183 VAGANVLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYDNVVVPV 242

Query:    61 QVQDSIAGVSDGIG 74
             +  D  +   D IG
Sbjct:   243 E-DDRGSSTGDAIG 255

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015204 "urea transmembrane transporter activity" evidence=IDA

GO:0015840 "urea transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0090406 "pollen tube" evidence=IDA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY-DIVV 57
             + GAN+LA GPFSGGSMNPA +FG AVV+G F    +YWVGPL G A+AGL+Y D+ +
Sbjct:   180 IVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFI 237

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042807 "central vacuole" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2094977 DELTA-TIP "delta tonoplast integral protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
             + GAN+LA GPFSGGSMNPA +FG AV AG F    VYWVGPL G  +AGL+Y
Sbjct:   180 IVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIY 232

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA;IDA

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015204 "urea transmembrane transporter activity" evidence=IGI

GO:0015840 "urea transport" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0015200 "methylammonium transmembrane transporter activity" evidence=IDA

GO:0051739 "ammonia transmembrane transporter activity" evidence=IGI

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0042807 "central vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 35/58 (60%), Positives = 44/58 (75%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY-DIVV 57
             + GAN+LA GPFSGGSMNPA +FG AVV+G      +YWVGPL G A+AGL+Y D+ +
Sbjct:   180 IVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFI 237

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015200 "methylammonium transmembrane transporter activity" evidence=IDA

GO:0051739 "ammonia transmembrane transporter activity" evidence=IGI

GO:0042807 "central vacuole" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2088867 TIP2 "tonoplast intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 33/66 (50%), Positives = 43/66 (65%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
             + GAN+LA G FSG SMNPA AFG AVV+ ++ N  VYW GPL G  +AG++YD V    
Sbjct:   183 IVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFIDE 242

Query:    61 QVQDSI 66
                + +
Sbjct:   243 NAHEQL 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA;RCA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0030104 "water homeostasis" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0043674 "columella" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2057906 GAMMA-TIP "gamma tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDI 55
             + GAN+LA G FSG SMNPA AFG AVV+ ++ N  VYW GPL G  +AGL+Y++
Sbjct:   182 IVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEV 236

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA;IDA;RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015204 "urea transmembrane transporter activity" evidence=IGI

GO:0015840 "urea transport" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0042807 "central vacuole" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2197279 TIP3;1 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
             + GAN+L  GPFSG SMNPA AFG A+V   + +  +YWVGP  G+A+A L+Y+ +V P 
Sbjct:   190 IVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMVIPT 249

Query:    61 Q 61
             +
Sbjct:   250 E 250

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006914 "autophagy" evidence=TAS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0042807 "central vacuole" evidence=IDA

TAIR|locus:2030968 BETA-TIP "beta-tonoplast intrinsic protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
             + GAN+L  GPF G SMNPA AFG A+V   + N  +YWVGP  G A+A L+Y+ ++ P+
Sbjct:   190 IVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIYEYMIIPS 249

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2043505 TIP4;1 "tonoplast intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVV 57
             + GAN+LA G FSG SMNPA +FG A+V+G++ +  VYWVGPL G  +AG +Y+ V+
Sbjct:   176 VVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVL 232

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA

GO:0015250 "water channel activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0042807 "central vacuole" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2116987 TIP1;3 "tonoplast intrinsic protein 1;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query:     1 MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIV 56
             + GAN+L  G F G SMNPA +FG AVV+  + N  VYWVGP  GAA+A +VYD +
Sbjct:   182 IVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTI 237

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA;ISS

GO:0006833 "water transport" evidence=IEA;IDA

GO:0015250 "water channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015204 "urea transmembrane transporter activity" evidence=IDA

GO:0015840 "urea transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STX9	TIP51_ARATH	No assigned EC number	0.7162	0.6822	0.2851	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.315.1 aquaporin, MIP family (241 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
PLN00167	256	PLN00167, PLN00167, aquaporin TIP5; Provisional	1e-33
PLN00166	250	PLN00166, PLN00166, aquaporin TIP2; Provisional	2e-16
PLN00027	252	PLN00027, PLN00027, aquaporin TIP; Provisional	2e-16
pfam00230	218	pfam00230, MIP, Major intrinsic protein	2e-14
cd00333	228	cd00333, MIP, Major intrinsic protein (MIP) superf	6e-11
PLN00182	283	PLN00182, PLN00182, putative aquaporin NIP4; Provi	4e-10
PLN00183	274	PLN00183, PLN00183, putative aquaporin NIP7; Provi	3e-09
PLN00026	298	PLN00026, PLN00026, aquaporin NIP; Provisional	9e-09
TIGR00861	216	TIGR00861, MIP, MIP family channel proteins	2e-08
PLN00184	296	PLN00184, PLN00184, aquaporin NIP1; Provisional	4e-07
COG0580	241	COG0580, GlpF, Glycerol uptake facilitator and rel	8e-07

>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional

 Score =  116 bits (292), Expect = 1e-33
 Identities = 57/74 (77%), Positives = 61/74 (82%), Gaps = 1/74 (1%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
           +AGANVLA GPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPL G AVAGL+YD VVFP 
Sbjct: 183 VAGANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPT 242

Query: 61  QVQDSIAGVSDGIG 74
           Q  D  +   D +G
Sbjct: 243 QD-DRGSSTGDAVG 255

Length = 256

>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional

 Score = 71.5 bits (175), Expect = 2e-16
 Identities = 35/53 (66%), Positives = 42/53 (79%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           + GAN+LA GPFSGGSMNPA +FG AVV+G F    +YWVGPL G A+AGL+Y
Sbjct: 180 IVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIY 232

Length = 250

>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIV 56
           GAN+LA G F G SMNPA +FG AVV+ ++ N  VYW GPL G  +AGLVY+++
Sbjct: 184 GANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELI 237

Length = 252

>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
             N LA GP++G SMNPA +FG AVV   + +  VYWVGPL GAA+A LVY
Sbjct: 168 FLNHLAGGPYTGASMNPARSFGPAVVLWKWDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218

>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily

 Score = 56.1 bits (136), Expect = 6e-11
 Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQA---VYWVGPLFGAAVAGLVYDIV 56
            A  LA GP +G SMNPA + G A+  G  ++     VYWVGPL GA    LVYD V
Sbjct: 172 AAIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228

>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional

 Score = 54.5 bits (131), Expect = 4e-10
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 5   NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVF 58
           NV   GP SG SMNPA + G A+V G +K   VY VGP  G    G VY+++ F
Sbjct: 201 NVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRF 254

Length = 283

>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY 53
           G  VL TGP SGGSMNPA + G A+V+  FK+  +Y   P  GA    L++
Sbjct: 201 GLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMF 251

Length = 274

>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional

 Score = 50.6 bits (121), Expect = 9e-09
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 5   NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD 64
           N+L  GP +GGSMNP    G AV AG+++   +Y V P  GA      Y  V    +  D
Sbjct: 229 NILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDGD 288

Query: 65  S 65
            
Sbjct: 289 P 289

Length = 298

>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGS--FKNQAVYWVGPLFGAAVAGLVY 53
               L+ GP++G  MNPA + G A+ AG   + N  VYWVGP+ GA +  LVY
Sbjct: 164 FLIHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216

1.A.8 The Major Intrinsic Protein (MIP) FamilyThe MIP family is large and diverse, possessing over 100 members that all form transmembrane channels. These channel proteins function in water, smallcarbohydrate (e.g., glycerol), urea, NH3, CO2 and possibly ion transport by an energy independent mechanism. They are found ubiquitously in bacteria, archaeaand eukaryotes. The MIP family contains two major groups of channels: aquaporins and glycerol facilitators.The known aquaporins cluster loosely together as do the known glycerol facilitators. MIP family proteins are believed to form aqueous pores that selectively allow passive transport of their solute(s) across the membrane with minimal apparent recognition. Aquaporins selectively transport water (but not glycerol) while glycerol facilitators selectively transport glycerol but not water. Some aquaporins can transport NH3 and CO2. Glycerol facilitators function as solute nonspecific channels, and may transport glycerol, dihydroxyacetone, propanediol, urea and other small neutral molecules in physiologically importantprocesses. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes [Transport and binding proteins, Unknown substrate]. Length = 216

>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 5   NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVF 58
           NVL   P S  SMNP  + G A+V G +K   +Y V P  GA     VY+ V +
Sbjct: 220 NVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRY 273

Length = 296

>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 6   VLATGPFSGGSMNPACAFGSAVV---AGSFKNQA------VYWVGPLFGAAVAGLVYDIV 56
            L+ GP +G ++NPA   G  +    AG   N+       +  +GP+ GA +  L+Y ++
Sbjct: 179 GLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLL 238

Query: 57  VFP 59
           +  
Sbjct: 239 LGR 241

Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG0223	238	consensus Aquaporin (major intrinsic protein famil	99.75
PLN00182	283	putative aquaporin NIP4; Provisional	99.62
PLN00184	296	aquaporin NIP1; Provisional	99.61
PLN00027	252	aquaporin TIP; Provisional	99.61
PLN00166	250	aquaporin TIP2; Provisional	99.61
PLN00026	298	aquaporin NIP; Provisional	99.58
PLN00167	256	aquaporin TIP5; Provisional	99.55
PRK05420	231	aquaporin Z; Provisional	99.54
PLN00183	274	putative aquaporin NIP7; Provisional	99.52
PTZ00016	294	aquaglyceroporin; Provisional	99.46
cd00333	228	MIP Major intrinsic protein (MIP) superfamily. Mem	99.43
PF00230	227	MIP: Major intrinsic protein; InterPro: IPR000425	99.37
PLN00184	296	aquaporin NIP1; Provisional	99.37
TIGR00861	216	MIP MIP family channel proteins. processes. Some m	99.36
PLN00026	298	aquaporin NIP; Provisional	99.36
PLN00166	250	aquaporin TIP2; Provisional	99.27
PLN00183	274	putative aquaporin NIP7; Provisional	99.23
PLN00167	256	aquaporin TIP5; Provisional	99.22
PLN00182	283	putative aquaporin NIP4; Provisional	99.22
PRK05420	231	aquaporin Z; Provisional	99.22
COG0580	241	GlpF Glycerol uptake facilitator and related perme	99.2
PLN00027	252	aquaporin TIP; Provisional	99.19
PTZ00016	294	aquaglyceroporin; Provisional	99.19
TIGR00861	216	MIP MIP family channel proteins. processes. Some m	99.18
COG0580	241	GlpF Glycerol uptake facilitator and related perme	99.18
cd00333	228	MIP Major intrinsic protein (MIP) superfamily. Mem	99.15
KOG0224	316	consensus Aquaporin (major intrinsic protein famil	99.11
PF00230	227	MIP: Major intrinsic protein; InterPro: IPR000425	98.87
KOG0223	238	consensus Aquaporin (major intrinsic protein famil	98.82
KOG0224	316	consensus Aquaporin (major intrinsic protein famil	98.75

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=99.75  E-value=3.6e-19  Score=139.05  Aligned_cols=61  Identities=54%  Similarity=1.066  Sum_probs=56.5

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCccc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ   63 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~   63 (107)
                      .+.+++++++||++|||||+|||+++.+.|++||+||+||++|+++++++|+.++.|..++
T Consensus       171 ~~~~l~~g~~TG~sMNPArSfGpAvv~~~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~  231 (238)
T KOG0223|consen  171 GLNILAAGPFTGASMNPARSFGPAVVYGSWDDHWIYWVGPLLGAILAALIYRLVFIPDESE  231 (238)
T ss_pred             HHHHHeecCcCcCccCcHHHhhHHHHhcCCCcEEEEEhhHHHHHHHHHHHHHHhccCcccc
Confidence            4567888999999999999999999999999999999999999999999999999998433

>PLN00182 putative aquaporin NIP4; Provisional

Probab=99.62  E-value=1.2e-16  Score=127.26  Aligned_cols=56  Identities=46%  Similarity=0.874  Sum_probs=51.7

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      +.+++.+++||+||||||+|||++..+.|+++|+||+||++|+++++++|++++.+
T Consensus       200 ~~~~~~g~~SGa~lNPARt~gpal~~~~~~~~wvY~vap~lGA~lgally~~l~~~  255 (283)
T PLN00182        200 LNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFT  255 (283)
T ss_pred             HHHHHccccCccccChHHHHHHHHHhccccceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45567889999999999999999998899999999999999999999999999854

>PLN00184 aquaporin NIP1; Provisional

Probab=99.61  E-value=9.6e-17  Score=128.41  Aligned_cols=63  Identities=37%  Similarity=0.601  Sum_probs=56.9

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcccccc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQDSI   66 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~~~~   66 (107)
                      +.+++.+++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.++.+.+++
T Consensus       219 ~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~  281 (296)
T PLN00184        219 LNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREI  281 (296)
T ss_pred             HHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhh
Confidence            345678999999999999999999999999999999999999999999999999888766544

>PLN00027 aquaporin TIP; Provisional

Probab=99.61  E-value=1.2e-16  Score=124.73  Aligned_cols=57  Identities=51%  Similarity=0.998  Sum_probs=52.5

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      .+++++++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.++.
T Consensus       186 ~~~~~g~~TG~~~NPAR~~gPal~~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~~  242 (252)
T PLN00027        186 NILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIFIGST  242 (252)
T ss_pred             HHHhcccccccccCcchhHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            456778999999999999999999999999999999999999999999999987644

>PLN00166 aquaporin TIP2; Provisional

Probab=99.61  E-value=2.1e-16  Score=123.43  Aligned_cols=58  Identities=60%  Similarity=1.070  Sum_probs=51.9

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      +.++.++++||++|||||+|||+++.+.|+++|+||+||++|+++++++|+.++.+..
T Consensus       183 ~~~~~~~~~tG~~~NPAR~~gPal~~~~~~~~wvywvgPi~Ga~~aa~~y~~l~~~~~  240 (250)
T PLN00166        183 ANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSY  240 (250)
T ss_pred             HHHHcccCCCCCccCchHhhHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHhcccC
Confidence            3456788999999999999999999999999999999999999999999998865333

>PLN00026 aquaporin NIP; Provisional

Probab=99.58  E-value=3.3e-16  Score=125.62  Aligned_cols=61  Identities=36%  Similarity=0.605  Sum_probs=54.9

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCccc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ   63 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~   63 (107)
                      ++++++++++||++|||||+|||++..++|+++|+||+||++|+++++++|+.+..++++.
T Consensus       227 ~~~~l~~g~~TGa~mNPARtlgPal~~~~~~~~wVy~vaPilGAilga~ly~~~~~~~~~~  287 (298)
T PLN00026        227 MLNILVAGPSTGGSMNPVRTLGPAVAAGNYRAIWIYLVAPTLGALAGAGTYTAVKLREEDG  287 (298)
T ss_pred             HHHHHHhcccCccccChHHHHHHHHhcCCchheeHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            3455678899999999999999999999999999999999999999999999997776643

>PLN00167 aquaporin TIP5; Provisional

Probab=99.55  E-value=1.3e-15  Score=119.50  Aligned_cols=60  Identities=85%  Similarity=1.382  Sum_probs=53.9

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      ..+.++++||++|||||+|||++..+.|+++|+||+||++|+++++++|++++.|..+.+
T Consensus       187 ~~~~~g~~TG~a~NPAR~~gPal~~~~~~~~wvywvgP~~Ga~l~a~~y~~l~~~~~~~~  246 (256)
T PLN00167        187 NVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLYDNVVFPTQDDR  246 (256)
T ss_pred             HHHhccCCCCcccCcccchHHHHhccCccCcEEEeHHHHHHHHHHHHHHHHHhCCCcCCC
Confidence            456778999999999999999999989999999999999999999999999997665443

>PRK05420 aquaporin Z; Provisional

Probab=99.54  E-value=1.4e-15  Score=117.43  Aligned_cols=56  Identities=30%  Similarity=0.629  Sum_probs=49.6

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCC--CcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w--~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      .+++++++||++|||||+|||+++.+.|  +++|+||+||++|+++++++|++++..+
T Consensus       173 ~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~l~~~~  230 (231)
T PRK05420        173 IHLISIPVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKD  230 (231)
T ss_pred             HHHHhhccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHHHhccC
Confidence            3456789999999999999999998755  5899999999999999999999987654

>PLN00183 putative aquaporin NIP7; Provisional

Probab=99.52  E-value=2.4e-15  Score=119.21  Aligned_cols=59  Identities=41%  Similarity=0.691  Sum_probs=53.7

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      +.+++++++||+||||||+|+|++.+..|+++|+||+||++|+++++++|+.++.++..
T Consensus       202 ~~v~~~g~~TG~~~NPArtlgpai~~~~~~~~wvy~vapilGailaa~l~~~l~~~~~~  260 (274)
T PLN00183        202 LAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAPTIGAVAGALMFHLLRLRTQP  260 (274)
T ss_pred             HHHHhccCCCCCEeCHHHHHHHHHhCCChhheehHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            34567889999999999999999999899999999999999999999999999876654

>PTZ00016 aquaglyceroporin; Provisional

Probab=99.46  E-value=1.9e-14  Score=114.87  Aligned_cols=56  Identities=29%  Similarity=0.444  Sum_probs=48.7

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhc----C--CCC----cceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVA----G--SFK----NQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~----~--~w~----~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ..++.++.||++|||||+|||+++.    +  .|+    ++|+||+||++|+++|+++|++++.|.
T Consensus       227 i~~~~g~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~  292 (294)
T PTZ00016        227 IGISFGGNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPL  292 (294)
T ss_pred             HHHhccCCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCC
Confidence            3456788999999999999999996    2  454    689999999999999999999998765

>cd00333 MIP Major intrinsic protein (MIP) superfamily

Probab=99.43  E-value=1.8e-14  Score=109.88  Aligned_cols=53  Identities=53%  Similarity=0.877  Sum_probs=47.7

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcCC---CCcceeehhhhhhHHHHHHHHHHHH
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAGS---FKNQAVYWVGPLFGAAVAGLVYDIV   56 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~~---w~~~wvY~vap~lGAilaally~~l   56 (107)
                      +.++.++++||+|+||||+|+|++.++.   |+++|+||++|++|+++++++|+++
T Consensus       173 ~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~  228 (228)
T cd00333         173 AIGLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV  228 (228)
T ss_pred             HHHHHhhcccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence            3456678999999999999999999985   9999999999999999999999863

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.

>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]

Probab=99.37  E-value=3.2e-14  Score=107.22  Aligned_cols=48  Identities=52%  Similarity=0.998  Sum_probs=43.8

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHH
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVY   53 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally   53 (107)
                      .+.+++.||++|||||+|||++..+.|+++|+||++|++|+++|+++|
T Consensus       180 ~~~~~~~tG~~~NPAr~~g~~l~~~~~~~~wvy~~~P~~Ga~~a~~~Y  227 (227)
T PF00230_consen  180 VLAGGPYTGASLNPARALGPALFSGIWDYFWVYWVGPFIGAILAALLY  227 (227)
T ss_dssp             HHHHHHHHST-SSHHHHHHHHHHHTHHTTTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCchhhcCceeecccCCeEEEEEehHHHHHHHHHhhC
Confidence            445678899999999999999999999999999999999999999987

These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....

>PLN00184 aquaporin NIP1; Provisional

Probab=99.37  E-value=5.5e-14  Score=112.56  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      |++++++.+++||+|+||||||++++.++ +|.++|+||++|++|+++|+++++.++...
T Consensus        98 v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~~~~~~YiiaQllGA~lga~~~~~l~~~~  157 (296)
T PLN00184         98 IMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLD  157 (296)
T ss_pred             HHHHHHHhcCCCccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            44567788999999999999999999988 899999999999999999999999988643

>TIGR00861 MIP MIP family channel proteins

Probab=99.36  E-value=6.5e-14  Score=106.00  Aligned_cols=49  Identities=49%  Similarity=0.972  Sum_probs=44.9

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC--CCCcceeehhhhhhHHHHHHHHH
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG--SFKNQAVYWVGPLFGAAVAGLVY   53 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~--~w~~~wvY~vap~lGAilaally   53 (107)
                      .++..+++||+|+||||+|+|++.++  +|+++|+||++|++|+++++++|
T Consensus       166 ~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y  216 (216)
T TIGR00861       166 IHLSMGPYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY  216 (216)
T ss_pred             HHHhCCCCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence            45667899999999999999999987  89999999999999999999875

processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.

>PLN00026 aquaporin NIP; Provisional

Probab=99.36  E-value=6.6e-14  Score=112.39  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      |++.+++.+++||+|||||||+++++.++ +|.++|+||++|++|+++|+++++.++.+.
T Consensus       115 V~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~  174 (298)
T PLN00026        115 VMIVILSTGHISGAHLNPSLTIAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPF  174 (298)
T ss_pred             HHHHHHHhhccCccccCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34556778999999999999999999987 899999999999999999999999998763

>PLN00166 aquaporin TIP2; Provisional

Probab=99.27  E-value=4.5e-13  Score=104.79  Aligned_cols=57  Identities=28%  Similarity=0.447  Sum_probs=51.2

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      |++++++++++||+|+|||||+++++.++ +|.+.|+||++|++|+++++.+++.++.
T Consensus        67 v~~~i~~~g~iSGah~NPAvt~~~~l~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~  124 (250)
T PLN00166         67 LFVGVSIAANISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTN  124 (250)
T ss_pred             HHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567788999999999999999999876 7899999999999999999999998864

>PLN00183 putative aquaporin NIP7; Provisional

Probab=99.23  E-value=1e-12  Score=104.21  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++.+++.+++||+|+|||||+++++.++ +|..+|+||++|++|+++|+.+++.++..
T Consensus        90 ~~~i~~~g~vSGah~NPAvTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~  147 (274)
T PLN00183         90 VVVVFSIGSISGAHVNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGV  147 (274)
T ss_pred             HHHHHHhhccCccccCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4456778999999999999999999988 89999999999999999999999888764

>PLN00167 aquaporin TIP5; Provisional

Probab=99.22  E-value=1.6e-12  Score=102.01  Aligned_cols=58  Identities=28%  Similarity=0.519  Sum_probs=51.9

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      |++++++.+++||+|+|||+|+++++.++ +|...|+||++|++|+++++.+++.++..
T Consensus        71 v~~~i~~~g~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~  129 (256)
T PLN00167         71 LSSAVYIAANISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVG  129 (256)
T ss_pred             HHHHHHHhhcccccccCHHHHHHHHHhCCCcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44567888999999999999999999887 79999999999999999999999887644

>PLN00182 putative aquaporin NIP4; Provisional

Probab=99.22  E-value=1.2e-12  Score=104.34  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=51.4

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      ++++++.+++||+|+|||+|+++++.++ +|.+.|+||++|++|+++|+++++.++.
T Consensus        87 ~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~  143 (283)
T PLN00182         87 MVMIYSTGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFN  143 (283)
T ss_pred             HHHHHHhcCCCccccCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456778999999999999999999998 8999999999999999999999998884

>PRK05420 aquaporin Z; Provisional

Probab=99.22  E-value=1.4e-12  Score=100.66  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=50.7

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++++++.+++||+|+|||+|+++.+.++ +|.+.|+||++|++|+++|+.+.+.++.+
T Consensus        48 ~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~  105 (231)
T PRK05420         48 LTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASG  105 (231)
T ss_pred             HHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3456778999999999999999999987 89999999999999999999888777654

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.9e-12  Score=101.65  Aligned_cols=63  Identities=21%  Similarity=0.341  Sum_probs=57.9

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      |.+++|+.+++||+|+|||+|++.++.++ +|++...||++|++||++++.+...++.++..+-
T Consensus        52 V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~  115 (241)
T COG0580          52 VLVAIYAFGGISGAHLNPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILET  115 (241)
T ss_pred             HHHHHHhccCcCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence            45678899999999999999999999999 8999999999999999999999999999888544

>PLN00027 aquaporin TIP; Provisional

Probab=99.19  E-value=1.9e-12  Score=101.13  Aligned_cols=56  Identities=29%  Similarity=0.510  Sum_probs=49.8

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      ++++++++++||+|+|||||+++++.++ +|...|+||++|++|+++++++++.+..
T Consensus        70 ~~~i~~~~~iSGah~NPAvtl~~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~  126 (252)
T PLN00027         70 FVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTG  126 (252)
T ss_pred             HHHHHHHcccCccccChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556778899999999999999999777 7889999999999999999999987753

>PTZ00016 aquaglyceroporin; Provisional

Probab=99.19  E-value=1.9e-12  Score=103.42  Aligned_cols=58  Identities=29%  Similarity=0.457  Sum_probs=52.3

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++++++++++||+|+|||+|+++++.++ +|...|.||++|++|+++|+++.+.++.++
T Consensus        95 ~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~  153 (294)
T PTZ00016         95 TFGLLVSAGISGGHLNPAVTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGF  153 (294)
T ss_pred             HHHHHHhcccCcCccCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3456778899999999999999999998 899999999999999999999998887654

>TIGR00861 MIP MIP family channel proteins

Probab=99.18  E-value=2.3e-12  Score=97.51  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=52.1

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      +.+++.+++||+|+|||+|+++++.++ +|.+.|+||++|++|+++++++++.++.++.
T Consensus        47 ~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~  105 (216)
T TIGR00861        47 TLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLF  105 (216)
T ss_pred             HHHHHHhcccccccCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            345667889999999999999999988 8999999999999999999999998887764

processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]

Probab=99.18  E-value=5.2e-12  Score=99.17  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=46.1

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC---------CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG---------SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~---------~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      ..+..++.||.++||||++||++...         +++|+|+||++|++|+++++++|+.++.
T Consensus       178 i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa~lg~~~~~~~~~  240 (241)
T COG0580         178 IGLSLGPTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLYKLLLG  240 (241)
T ss_pred             HHHHhcCCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence            34567889999999999999999542         1248999999999999999999998765

>cd00333 MIP Major intrinsic protein (MIP) superfamily

Probab=99.15  E-value=2.6e-12  Score=97.94  Aligned_cols=59  Identities=25%  Similarity=0.358  Sum_probs=52.9

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      ++++..+++||+|+|||+++++++.++ +|.+.|+||++|++|+++++++++.++.++..
T Consensus        47 ~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~  106 (228)
T cd00333          47 VLVYAVGHISGGHINPAVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYL  106 (228)
T ss_pred             HHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            455678899999999999999999988 79999999999999999999999998876543

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.2e-11  Score=100.00  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=53.1

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      |++++++++.+||+|+|||+||+..+.++ +|.++.+|.++|++||++|+.....+|+.
T Consensus        77 v~~gVyvag~iSGgHlNPAVS~a~~~~g~~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d  135 (316)
T KOG0224|consen   77 VMMGVYVAGRISGGHLNPAVSLAMCILGRLPWKKFPVYVLAQFIGAFLGAATVYGLYYD  135 (316)
T ss_pred             HHHHHHhhccccccccCHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999 89999999999999999999887777743

>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]

Probab=98.87  E-value=1e-10  Score=88.13  Aligned_cols=56  Identities=29%  Similarity=0.462  Sum_probs=49.7

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      .++..+++||+|+|||+|++..+.++ +|.+...|+++|++|+++|+.+.+.++.+.
T Consensus        61 ~i~~~~~iSGaH~NPaVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~  117 (227)
T PF00230_consen   61 LIYAFGPISGAHFNPAVTLAFALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDS  117 (227)
T ss_dssp             HHHHHHHHHTSS-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred             hhhhhhhccccccccchhhheeeeeeecccceeeEEeeccccccccccchhhcccCc
Confidence            45567889999999999999999998 899999999999999999999998888764

These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=98.82  E-value=5.3e-10  Score=87.60  Aligned_cols=59  Identities=29%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++..++..+++||+|+|||+|++..+.++ ++.+...||++|++|+++|+.+.+.+..+.
T Consensus        55 v~v~i~~~g~iSGaH~NPAVT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~  114 (238)
T KOG0223|consen   55 VFVLVYSTGHISGAHFNPAVTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQ  114 (238)
T ss_pred             HHHHHhhhccccccccCHHHHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence            34567788999999999999999999998 788999999999999999999999998875

>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]

Probab=98.75  E-value=2.2e-09  Score=87.07  Aligned_cols=57  Identities=30%  Similarity=0.442  Sum_probs=48.5

Q ss_pred             eeccccCCcCChHhHHHHHHhcC-------CC----CcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            8 ATGPFSGGSMNPACAFGSAVVAG-------SF----KNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         8 ~~g~~SGasLNPArs~gpav~~~-------~w----~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      ..+..+|..|||||+|||+++..       .+    .++|+.|++|++|+++++++|.++..-|.+++
T Consensus       214 s~G~N~GyaiNPARDlgPRlF~~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~~~~  281 (316)
T KOG0224|consen  214 SLGYNTGYAINPARDLGPRLFTSIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHIPRE  281 (316)
T ss_pred             HhhcccCcccCcccccchHHHHHHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccCCCC
Confidence            44677999999999999999941       11    46789999999999999999999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	107
3iyz_A	340	Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res		5e-10
2zz9_A	301	Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso		5e-10
2d57_A	301	Double Layered 2d Crystal Structure Of Aquaporin-4		5e-10
3gd8_A	223	Crystal Structure Of Human Aquaporin 4 At 1.8 And I		2e-09
2b6o_A	263	Electron Crystallographic Structure Of Lens Aquapor		5e-09
1ymg_A	263	The Channel Architecture Of Aquaporin O At 2.2 Angs		5e-09
1fqy_A	269	Structure Of Aquaporin-1 At 3.8 A Resolution By Ele		6e-09
1sor_A	235	Aquaporin-0 Membrane Junctions Reveal The Structure		6e-09
3m9i_A	220	Electron Crystallographic Structure Of Lens Aquapor		9e-09
1j4n_A	271	Crystal Structure Of The Aqp1 Water Channel Length		9e-09
3d9s_A	266	Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St		5e-07
2b5f_A	303	Crystal Structure Of The Spinach Aquaporin Sopip2;1		2e-06
3cn5_A	304	Crystal Structure Of The Spinach Aquaporin Sopip2;1		2e-06
3cn6_A	304	Crystal Structure Of The Spinach Aquaporin Sopip2;1		2e-06
3cll_A	300	Crystal Structure Of The Spinach Aquaporin Sopip2;1		3e-06
1z98_A	281	Crystal Structure Of The Spinach Aquaporin Sopip2;1		3e-06
2w1p_A	279	1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo		8e-05

>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P
Sbjct: 224 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 271

>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232

>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P
Sbjct: 185 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 232

>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P
Sbjct: 176 YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223

>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225

>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 178 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225

>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  +NPA +FGSAV+  +F N  ++WVGP  G A+A L+YD ++ P
Sbjct: 186 YTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAP 233

>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 174 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 221

>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 172 YTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 219

>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
           ++G  +NPA +FGS+V+  +F++  ++WVGP  GAA+A L+YD ++ P
Sbjct: 188 YTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAP 235

>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKN-QAVYWVGPLFGAAVAGLVYDIVVFPAQVQDS 65
           F+G SMNPA +FG AVV   F     V+WVGP+ GA +A ++Y  ++FP  +  S
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLSLS 234

>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7   LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
           LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  A ++
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270

>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7   LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
           LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  A ++
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293

>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7   LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
           LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  A ++
Sbjct: 234 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293

>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7   LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
           LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  A ++
Sbjct: 230 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 289

>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 7   LATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQ 63
           LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  A ++
Sbjct: 211 LATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270

>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 12  FSGGSMNPACAFGSAVVAGSFKN-QAVYWVGPLFGAAVAGLVYDI 55
           ++G  +NPA +FG AV A SF N   +YW+GP+ GA +A  ++ +
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQM 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	3e-20
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	3e-20
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	3e-20
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	8e-20
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	1e-19
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	7e-18
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	7e-18
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	1e-17
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	8e-16
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	4e-15
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	1e-11
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	2e-06
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	1e-04

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263

 Score = 81.2 bits (201), Expect = 3e-20
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L    ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 169 TLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223

 Score = 80.3 bits (199), Expect = 3e-20
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L    ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P
Sbjct: 167 AIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340

 Score = 82.2 bits (203), Expect = 3e-20
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA 60
               L    ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P 
Sbjct: 215 AIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301

 Score = 80.5 bits (199), Expect = 8e-20
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV 62
               L    ++G SMNPA +FG AV+ G+++N  +YWVGP+ GA +AG +Y+ V  P   
Sbjct: 176 AIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 235

Query: 63  QDSIAGVSDGIGGTQRRE 80
                  +      Q + 
Sbjct: 236 LKRRLKEAFSKAAQQTKG 253

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271

 Score = 79.7 bits (197), Expect = 1e-19
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV 62
               L    ++G  +NPA +FGS+V+  +F++  ++WVGP  GAA+A L+YD ++ P   
Sbjct: 179 ALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSS 238

Query: 63  QDS 65
             +
Sbjct: 239 DLT 241

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266

 Score = 74.7 bits (184), Expect = 7e-18
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFK-NQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L    F+G SMNPA +FG AVV   F     V+WVGP+ GA +A ++Y  ++FP
Sbjct: 171 TLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279

 Score = 75.1 bits (185), Expect = 7e-18
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQA-VYWVGPLFGAAVAGLVYDIVVFP 59
               L    ++G  +NPA +FG AV A SF N   +YW+GP+ GA +A  ++ +  + 
Sbjct: 209 LIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWL 266

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFK---NQAVYWVGPLFGAAVAGLVYDIVVFP 59
               LAT P +G  +NPA +FG+AV+  S K   +Q ++WVGP  GAAVA   +  V+  
Sbjct: 230 FMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289

Query: 60  AQVQ 63
           A ++
Sbjct: 290 AAIK 293

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234

 Score = 68.8 bits (169), Expect = 8e-16
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L + P +  S+NPA +   A+  G +  +    +WV P+ G  + GL+Y  ++  
Sbjct: 174 TLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256

 Score = 67.3 bits (165), Expect = 4e-15
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L + P +  S+NPA + G A+  G +  +   ++W+ P+ G A   +++ +    
Sbjct: 197 TLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEK 255

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQA------VYWVGPLFGAAVAGLVYDIV 56
              +   G  SG S+NPA  FG  +    F          +Y +GP+ GA +A L Y  +
Sbjct: 184 AGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYL 243

Query: 57  V 57
            
Sbjct: 244 T 244

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 4   ANVLATGPFSGGSMNPACAFGSAVVA----GSFKNQA------VYWVGPLFGAAVAGLVY 53
              +  G  +G ++NP+   GS  ++    G            V  V P  G+ V    Y
Sbjct: 179 CIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFY 238

Query: 54  DIVVFP 59
           D V+ P
Sbjct: 239 DKVICP 244

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 4   ANVLATGPFSGGSMNPACAFGSAVVA-------GSFKNQA------VYWVGPLFGAAVAG 50
               + GP +G +MNPA  FG  V A        +F          V   GP+ GA V  
Sbjct: 189 VIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGA 248

Query: 51  LVYDIVV 57
             Y  ++
Sbjct: 249 FAYRKLI 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	99.69
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	99.64
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	99.63
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	99.63
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	99.63
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	99.61
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	99.56
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	99.55
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	99.54
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	99.51
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	99.49
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	99.48
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	99.46
2b6o_A	263	Aquaporin-0, lens fiber major intrinsic protein; a	99.29
2f2b_A	246	Aquaporin AQPM; protein, integral membrane protein	99.18
3llq_A	256	Aquaporin Z 2; aquaporin tetramer, membrane protei	99.17
2zz9_A	301	Aquaporin-4; water transport, water channel, two-d	99.17
3c02_A	258	Aquaglyceroporin; membrane protein, glycerol, wate	99.15
2o9g_A	234	Aquaporin Z; integral membrane protein, structural	99.15
3d9s_A	266	Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro	99.15
3iyz_A	340	Aquaporin-4; water transport, water channel, two-d	99.14
1ldf_A	281	Glycerol uptake facilitator protein; glycerol-cond	99.14
2w2e_A	279	AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating	99.13
1j4n_A	271	Aquaporin 1; membrane protein, channel protein, tr	99.12
3cn5_A	304	Aquaporin; membrane protein, transmembrane, transp	99.09
3gd8_A	223	Aquaporin-4; proton exclusion, structural genomics	99.07

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*

Probab=99.69  E-value=2.9e-18  Score=133.29  Aligned_cols=58  Identities=40%  Similarity=0.800  Sum_probs=53.5

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      ++++++++||++|||||+|||+++.+.|+++|+||+||++|+++|+++|++++.|+..
T Consensus       171 ~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~  228 (263)
T 2b6o_A          171 GHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK  228 (263)
T ss_dssp             HHHHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             HHHhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            4456789999999999999999999999999999999999999999999999987764

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}

Probab=99.64  E-value=2.5e-17  Score=133.05  Aligned_cols=58  Identities=43%  Similarity=0.847  Sum_probs=53.2

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      +++.++++||++|||||+|||+++.+.|+++|+||+||++|+++|+++|++++.|...
T Consensus       217 ~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~  274 (340)
T 3iyz_A          217 GHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE  274 (340)
T ss_pred             HHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence            3455678999999999999999999999999999999999999999999999988764

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.7e-17  Score=126.14  Aligned_cols=54  Identities=46%  Similarity=0.910  Sum_probs=49.9

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++.++++||++|||||+|||+++.+.|+++|+||+||++|+++++++|++++.|
T Consensus       170 ~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          170 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            345567899999999999999999999999999999999999999999999876

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A

Probab=99.63  E-value=1.5e-17  Score=129.72  Aligned_cols=57  Identities=39%  Similarity=0.815  Sum_probs=52.1

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      ++.++++||++|||||+|||+++.+.|+++|+||+||++|+++|+++|++++.++.+
T Consensus       182 ~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~~  238 (271)
T 1j4n_A          182 HLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSS  238 (271)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             HHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            345568899999999999999999999999999999999999999999999988764

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}

Probab=99.63  E-value=2.5e-17  Score=128.39  Aligned_cols=59  Identities=42%  Similarity=0.773  Sum_probs=53.5

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCCCc-ceeehhhhhhHHHHHHHHHHHHhcCCccc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSFKN-QAVYWVGPLFGAAVAGLVYDIVVFPAQVQ   63 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w~~-~wvY~vap~lGAilaally~~l~~p~~~~   63 (107)
                      +++.++++||++|||||+|||+++.+.|++ +|+||+||++|+++|+++|++++.|+...
T Consensus       173 ~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~~  232 (266)
T 3d9s_A          173 GHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLS  232 (266)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSCC
T ss_pred             HHHHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCchh
Confidence            345667899999999999999999999998 99999999999999999999999887643

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A

Probab=99.61  E-value=3e-17  Score=130.36  Aligned_cols=57  Identities=44%  Similarity=0.860  Sum_probs=49.5

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      ++.++++||++|||||+|||+++.+.|+++|+||+||++|+++|+++|++++.|+.+
T Consensus       179 ~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~~  235 (301)
T 2zz9_A          179 HLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE  235 (301)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCchh
Confidence            345568899999999999999999999999999999999999999999999876553

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*

Probab=99.56  E-value=2.9e-16  Score=123.22  Aligned_cols=60  Identities=30%  Similarity=0.522  Sum_probs=53.0

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCC-CCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGS-FKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~-w~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      .++.++++||++|||||+|||+++.+. ++++|+||+||++|+++|+++|++++..+.++.
T Consensus       211 ~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~~~  271 (279)
T 2w2e_A          211 AHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTT  271 (279)
T ss_dssp             HHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence            445678899999999999999999985 468999999999999999999999998877543

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*

Probab=99.55  E-value=3.4e-16  Score=122.40  Aligned_cols=60  Identities=33%  Similarity=0.475  Sum_probs=49.3

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC-------CCC------cceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG-------SFK------NQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~-------~w~------~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      .++..+++||++|||||+|||+++..       .|+      ++|+||+||++|+++|+++|++++.++.+..
T Consensus       190 ~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~~~~~  262 (281)
T 1ldf_A          190 IGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCD  262 (281)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGGC---
T ss_pred             HHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCccCCcc
Confidence            34567889999999999999999851       222      7999999999999999999999998877644

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*

Probab=99.54  E-value=3.3e-16  Score=119.70  Aligned_cols=56  Identities=27%  Similarity=0.523  Sum_probs=49.6

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCC--CCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGS--FKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~--w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      .++..+++||++|||||+|||+++.+.  |+++|+||+||++|+++++++|++++.++
T Consensus       176 ~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~~  233 (234)
T 2o9g_A          176 IHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR  233 (234)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence            345678889999999999999999874  56999999999999999999999997653

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A

Probab=99.51  E-value=3.4e-16  Score=124.37  Aligned_cols=56  Identities=43%  Similarity=0.709  Sum_probs=50.6

Q ss_pred             EEeeeccccCCcCChHhHHHHHHh---cCCCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVV---AGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~---~~~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      .+++++++||++|||||+|||+++   .+.|+++|+||+||++|+++|+++|++++.+.
T Consensus       232 ~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~  290 (304)
T 3cn5_A          232 VHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA  290 (304)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence            445678899999999999999999   44799999999999999999999999998765

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=9.9e-16  Score=119.22  Aligned_cols=53  Identities=25%  Similarity=0.565  Sum_probs=47.3

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC--CCCcceeehhhhhhHHHHHHHHHHHHh
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG--SFKNQAVYWVGPLFGAAVAGLVYDIVV   57 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~--~w~~~wvY~vap~lGAilaally~~l~   57 (107)
                      ..+.++++||++|||||+|||+++.+  .|+++|+||+||++|+++|+++|+++.
T Consensus       199 i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~  253 (256)
T 3llq_A          199 IHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG  253 (256)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence            34566788999999999999999987  467999999999999999999999885

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}

Probab=99.48  E-value=4.4e-16  Score=120.44  Aligned_cols=60  Identities=27%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcC------CC----CcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAG------SF----KNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~------~w----~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      .++..+++||++|||||+|||+++.+      .|    .++|+||+||++|+++|+++|++++.++.+.+
T Consensus       180 ~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~~~~  249 (258)
T 3c02_A          180 IGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLA  249 (258)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHC
T ss_pred             HHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence            34567789999999999999999962      34    57999999999999999999999998776543

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*

Probab=99.46  E-value=4.7e-15  Score=113.75  Aligned_cols=54  Identities=33%  Similarity=0.611  Sum_probs=47.2

Q ss_pred             EEeeeccccCCcCChHhHHHHHHh----c--CCCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVV----A--GSFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~----~--~~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      .++..+++||+||||||+|||++.    +  ..|.++|+||++|++|+++|+++|++++.
T Consensus       186 ~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~  245 (246)
T 2f2b_A          186 IITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS  245 (246)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence            456678899999999999999992    2  26888999999999999999999998864

>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*

Probab=99.29  E-value=1.9e-13  Score=106.13  Aligned_cols=58  Identities=34%  Similarity=0.411  Sum_probs=52.8

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++++++.+++||+|+|||+|+++++.++ +|...|+||++|++|+++|+.+++.++.++
T Consensus        53 ~~~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~  111 (263)
T 2b6o_A           53 ATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPA  111 (263)
T ss_dssp             HHHHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHhhccCcCeeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            3456788999999999999999999988 899999999999999999999999998654

>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*

Probab=99.18  E-value=2.4e-12  Score=98.63  Aligned_cols=57  Identities=26%  Similarity=0.358  Sum_probs=52.7

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.+...|+++|++|+++|+.+.+.++.+
T Consensus        67 ~~~v~~~g~iSGaH~NPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~  124 (246)
T 2f2b_A           67 AASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI  124 (246)
T ss_dssp             HHHHHHHTTTTCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhheecccccceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            4566778999999999999999999998 89999999999999999999999999876

>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}

Probab=99.17  E-value=1.6e-12  Score=101.08  Aligned_cols=57  Identities=26%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      |++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++.
T Consensus        75 v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~  132 (256)
T 3llq_A           75 VLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIAT  132 (256)
T ss_dssp             HHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHheeeccccceEchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34567788999999999999999999998 8999999999999999999999998874

>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A

Probab=99.17  E-value=2.6e-12  Score=101.96  Aligned_cols=58  Identities=24%  Similarity=0.377  Sum_probs=52.8

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++.++
T Consensus        60 ~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~  118 (301)
T 2zz9_A           60 ATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS  118 (301)
T ss_dssp             HHHHHHHGGGTCCCCSHHHHHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             HHhhheeccCCcceeChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3456778999999999999999999998 899999999999999999999999988764

>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}

Probab=99.15  E-value=1.3e-12  Score=100.98  Aligned_cols=59  Identities=22%  Similarity=0.270  Sum_probs=53.6

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.+...|+++|++||++|+.+.+.++.++.
T Consensus        55 ~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~  114 (258)
T 3c02_A           55 FFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFI  114 (258)
T ss_dssp             HHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHheecccCcCeeChHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            4456778899999999999999999998 8999999999999999999999999987654

>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*

Probab=99.15  E-value=1.6e-12  Score=99.18  Aligned_cols=58  Identities=24%  Similarity=0.312  Sum_probs=52.5

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.+...|+++|++|+++|+.+.+.++.++
T Consensus        51 ~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~  109 (234)
T 2o9g_A           51 LTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK  109 (234)
T ss_dssp             HHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhccCcceeCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4456778999999999999999999998 899999999999999999999999888743

>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}

Probab=99.15  E-value=1.4e-12  Score=101.60  Aligned_cols=56  Identities=30%  Similarity=0.342  Sum_probs=51.3

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVF   58 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~   58 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|...+.|+++|++||++|+.+.+.++.
T Consensus        55 ~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~  111 (266)
T 3d9s_A           55 GTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAP  111 (266)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcccCcceECHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3456778999999999999999999998 8999999999999999999999998874

>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}

Probab=99.14  E-value=6e-12  Score=101.64  Aligned_cols=59  Identities=24%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      |++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++.++
T Consensus        98 V~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~  157 (340)
T 3iyz_A           98 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS  157 (340)
T ss_pred             HHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            56788999999999999999999999988 899999999999999999999988887654

>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*

Probab=99.14  E-value=2.1e-12  Score=100.91  Aligned_cols=59  Identities=19%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++.++.
T Consensus        53 ~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~  112 (281)
T 1ldf_A           53 AMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLF  112 (281)
T ss_dssp             HHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhheecccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4456778999999999999999999998 8999999999999999999999999887654

>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*

Probab=99.13  E-value=3.7e-12  Score=99.86  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      |++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++..+.
T Consensus        96 v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~  156 (279)
T 2w2e_A           96 VMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI  156 (279)
T ss_dssp             HHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHhhcCccccChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            34567788999999999999999999998 8999999999999999999999998885443

>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A

Probab=99.12  E-value=2.4e-12  Score=100.32  Aligned_cols=57  Identities=23%  Similarity=0.333  Sum_probs=51.2

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.....||++|++||++|+.+.+.++..
T Consensus        63 ~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~  120 (271)
T 1j4n_A           63 ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSS  120 (271)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCcceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            3456778899999999999999999998 89999999999999999999999888743

>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A

Probab=99.09  E-value=3.5e-12  Score=101.31  Aligned_cols=60  Identities=23%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             EEEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            2 AGANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         2 V~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      |++++++.+++||+|+|||+|++.++.++ +|.....|+++|++||++|+.+.+.++.++.
T Consensus       108 v~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~  168 (304)
T 3cn5_A          108 IFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPY  168 (304)
T ss_dssp             HHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34567788999999999999999999998 8999999999999999999999999887653

>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}

Probab=99.07  E-value=3.2e-12  Score=97.09  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=51.2

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcC
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFP   59 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p   59 (107)
                      ++++++.+++||+|+|||+|++.++.++ +|.+...|+++|++|+++|+.+.+.++.+
T Consensus        51 ~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~  108 (223)
T 3gd8_A           51 ATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP  108 (223)
T ss_dssp             HHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHheecccccceEcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3456778899999999999999999988 89999999999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	107
d1j4na_	249	f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId	2e-10
d1ymga1	234	f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [	2e-10
d1rc2a_	231	f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId	9e-08
d1fx8a_	254	f.19.1.1 (A:) Glycerol uptake facilitator protein	1e-05

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L    ++G  +NPA +FGS+V+  +F++  ++WVGP  GAA+A L+YD ++ P
Sbjct: 179 ALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAP 235

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 3   GANVLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFP 59
               L    ++G  MNPA +F  A++  +F N  VYWVGP+ GA +  L+YD ++FP
Sbjct: 164 TLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP 220

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

 Score = 45.9 bits (108), Expect = 9e-08
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVF 58
                 L + P +  S+NPA +   A+  G +  +    +WV P+ G  + GL+Y  ++ 
Sbjct: 169 ALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228

Query: 59  P 59
            
Sbjct: 229 K 229

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 13/70 (18%)

Query: 1   MAGANVLATGPFSGGSMNPACAFGSAVVA-------------GSFKNQAVYWVGPLFGAA 47
           +      + GP +G +MNPA  FG  V A                    V   GP+ GA 
Sbjct: 181 LIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAI 240

Query: 48  VAGLVYDIVV 57
           V    Y  ++
Sbjct: 241 VGAFAYRKLI 250

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	107
d1ymga1	234	Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1fx8a_	254	Glycerol uptake facilitator protein GlpF {Escheric	99.56
d1j4na_	249	Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1rc2a_	231	Aquaporin Z {Escherichia coli [TaxId: 562]}	99.53
d1ymga1	234	Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1rc2a_	231	Aquaporin Z {Escherichia coli [TaxId: 562]}	99.08
d1fx8a_	254	Glycerol uptake facilitator protein GlpF {Escheric	98.93
d1j4na_	249	Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}	98.92

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=8.9e-17  Score=120.18  Aligned_cols=59  Identities=39%  Similarity=0.769  Sum_probs=53.5

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCcccc
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQVQD   64 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~~~~   64 (107)
                      .+.+++.||++|||||+|||++.++.|+++|+||+||++|+++|+++|++++.|+.++.
T Consensus       167 ~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~  225 (234)
T d1ymga1         167 HLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSV  225 (234)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCH
T ss_pred             HHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcch
Confidence            34557789999999999999999999999999999999999999999999998886543

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.1e-16  Score=120.79  Aligned_cols=55  Identities=33%  Similarity=0.491  Sum_probs=49.7

Q ss_pred             EeeeccccCCcCChHhHHHHHHhc-------------CCCCcceeehhhhhhHHHHHHHHHHHHhcCC
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVA-------------GSFKNQAVYWVGPLFGAAVAGLVYDIVVFPA   60 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~-------------~~w~~~wvY~vap~lGAilaally~~l~~p~   60 (107)
                      ++..+++||++|||||+|||+++.             +.|+++|+||+||++|+++++++|++++..|
T Consensus       186 ~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         186 GASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             HhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHHHHHHHHHHHHHHHHHhhh
Confidence            455688999999999999999984             4789999999999999999999999998776

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=2.3e-16  Score=118.50  Aligned_cols=56  Identities=39%  Similarity=0.836  Sum_probs=51.4

Q ss_pred             EeeeccccCCcCChHhHHHHHHhcCCCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            6 VLATGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         6 v~~~g~~SGasLNPArs~gpav~~~~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      .+.++++||++|||||+|||++..+.|+++|+||+||++|+++|+++|++++.|+.
T Consensus       182 ~~~~~~~tG~~~NPAR~lgp~i~~~~~~~~wvy~vgP~iGa~la~~~y~~~~~p~~  237 (249)
T d1j4na_         182 HLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS  237 (249)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred             HHhcccccCcccChhhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHhcCCCC
Confidence            34567889999999999999999999999999999999999999999999988654

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.5e-16  Score=117.64  Aligned_cols=57  Identities=26%  Similarity=0.529  Sum_probs=51.1

Q ss_pred             EEeeeccccCCcCChHhHHHHHHhcCCC--CcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            5 NVLATGPFSGGSMNPACAFGSAVVAGSF--KNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         5 ~v~~~g~~SGasLNPArs~gpav~~~~w--~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      .++.++++||++|||||+|||++..+.|  +++|+||++|++|+++++++|++++.|++
T Consensus       173 ~~~~~~~~tG~~~NPAr~~gp~i~~~~~~~~~~wvy~~~P~~Ga~~a~~ly~~~~~~~d  231 (231)
T d1rc2a_         173 IHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD  231 (231)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHHHHCSHHHHHTTHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             hhhhccccCCcccchHhhhHHHHHcCCCcccceeEEehHHHHHHHHHHHHHHHHhcCCC
Confidence            4566788999999999999999998854  79999999999999999999999988763

>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=1.5e-12  Score=96.84  Aligned_cols=60  Identities=33%  Similarity=0.387  Sum_probs=54.1

Q ss_pred             EEEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCcc
Q 042738            3 GANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQV   62 (107)
Q Consensus         3 ~~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~~   62 (107)
                      ++++++.+++||+|+|||+|++..+.++ +|.....|+++|++||++|+++.+.++.++..
T Consensus        48 ~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~  108 (234)
T d1ymga1          48 ATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVR  108 (234)
T ss_dssp             HHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTC
T ss_pred             HHHHHHHhccccCccCchhhHHHHhccCCChhheeeeeehHHHHHHHHHHHHHHHcCcccc
Confidence            3456778999999999999999999998 89999999999999999999999999877653

>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin Z
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=7.7e-12  Score=91.94  Aligned_cols=58  Identities=24%  Similarity=0.337  Sum_probs=52.5

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      +.+++.+++||+|+|||+|++..+.++ +|.....|+++|++||++|+++.+.++..+.
T Consensus        49 ~~i~~~g~iSGaH~NPAVTla~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~~  107 (231)
T d1rc2a_          49 TMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKT  107 (231)
T ss_dssp             HHHHHHTTTTCCCCSHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHhcccCccCCCchhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            345677899999999999999999988 8999999999999999999999998887655

>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=2.3e-11  Score=91.13  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      +.+++.+++||+|+|||+|++..+.++ +|.+...|+++|++|+++|+++.+.++.++.
T Consensus        49 ~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~  107 (254)
T d1fx8a_          49 MAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLF  107 (254)
T ss_dssp             HHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccceEChhhHHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456677899999999999999999998 8999999999999999999999888876554

>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=2.8e-11  Score=90.29  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             EEEeeeccccCCcCChHhHHHHHHhcC-CCCcceeehhhhhhHHHHHHHHHHHHhcCCc
Q 042738            4 ANVLATGPFSGGSMNPACAFGSAVVAG-SFKNQAVYWVGPLFGAAVAGLVYDIVVFPAQ   61 (107)
Q Consensus         4 ~~v~~~g~~SGasLNPArs~gpav~~~-~w~~~wvY~vap~lGAilaally~~l~~p~~   61 (107)
                      +.+++.+++||+|+|||+|++..+.++ +|.+...|+++|++|+++|+.+.+.++....
T Consensus        64 ~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~~~  122 (249)
T d1j4na_          64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP  122 (249)
T ss_dssp             HHHHHHHHHHCCCCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHhhccccceeCchhHHHHHhccccchhheeeeeeHHHHHHHHHHhhheeeccccc
Confidence            345677889999999999999999998 8999999999999999999999999886544