Citrus Sinensis ID: 042752

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MGGKSSKSSSGSHYSSRGSASSSAWNNYGYPPPPSPYPQASPYYTPQQHYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADSNAEVPSRDKRGCQKLIGHEFMAYRKRCSCSQSDA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccEEEEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEccccccccccccccccccEccccccHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEccEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHcccccHHHHcEEEEEcHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHcccccHHHEcccccccccc
mggkssksssgshyssrgsasssawnnygyppppspypqaspyytpqqhyapspsfnygsqtpqpqrrldrkysriddnyksLDQVTGALAhaglessnlivgidftksnewtgsrsfnrrslhhighgqnpYEQAISIIGKtlsafdednlipcfgfgdasthdqdvfsfypddiccngFEEVLTQYREIVpslrlagptsfapIIEMATTIVEKSGGQYHVLLIIAdgqvtrsvdtqhgqlssqEQKTIDAIVQASEFPLSIILVgvgdgpwdmmkefddniparafdnfqfvNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAvnvektsnhapfvgpqyrresgfirqFAPRFFIWFGYSlladsnaevpsrdkrgcqkLIGHEFMAYrkrcscsqsda
mggkssksssgshyssrgsASSSAWNNYGYPPPPSPYPQASPYYTPQQHYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADsnaevpsrdKRGCQKLIGHefmayrkrcscsqsda
MggkssksssgshyssrgsasssAWNNygyppppspypqaspyytpqqHYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADSNAEVPSRDKRGCQKLIGHEFMAYRKRCSCSQSDA
*******************************************************************************YKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRS**************TIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADSN*********GCQKLIGHEFMAYRKR********
**************************************************************************RIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTK*N************LHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDT**********KTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMD*SRKETEFALAALMEIPSQYKATLELG**************************************************************LIGHEFMAYRKRCSCS****
***********************AWNNYGYPPPPSPYPQASPYYTPQQHYAPSPSFN***********LDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRS*************KTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADSNAEVPSRDKRGCQKLIGHEFMAYRK*********
***************************YG*PPPPSPYPQASPYYTPQQHYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILG*********NHA******************************************RGCQKLIGHEFMAYRKRCSCS****
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MGGKSSKSSSGSHYSSRGSASSSAWNNYGYPPPPSPYPQASPYYTPQQHYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHAPFVGPQYRRESGFIRQFAPRFFIWFGYSLLADSNAEVPSRDKRGCQKLIGHEFMAYRKRCSCSQSDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q9SS90489 E3 ubiquitin-protein liga no no 0.730 0.619 0.711 1e-132
Q9LY87468 E3 ubiquitin-protein liga no no 0.701 0.621 0.770 1e-131
Q092217705 Copine family protein 2 O yes no 0.580 0.031 0.513 2e-70
Q99829537 Copine-1 OS=Homo sapiens yes no 0.544 0.420 0.318 1e-24
Q8C166536 Copine-1 OS=Mus musculus yes no 0.544 0.421 0.336 4e-24
Q96FN4548 Copine-2 OS=Homo sapiens no no 0.537 0.406 0.322 7e-24
P59108548 Copine-2 OS=Mus musculus no no 0.544 0.412 0.322 9e-23
Q5BJS7553 Copine-9 OS=Rattus norveg no no 0.549 0.412 0.309 5e-22
Q9DC53564 Copine-8 OS=Mus musculus no no 0.510 0.375 0.320 5e-22
Q86YQ8564 Copine-8 OS=Homo sapiens no no 0.510 0.375 0.320 5e-22
>sp|Q9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/329 (71%), Positives = 267/329 (81%), Gaps = 26/329 (7%)

Query: 8   SSSGSHYSSRGSASSSAWNNYGYPPPPSPYPQASPYYTPQQHYAPSPSFNYGSQTPQPQR 67
           SS G  YS  G AS+++  NY  PPPPS           Q   A              ++
Sbjct: 91  SSYGHQYSQEGYASAASQPNY--PPPPS-----------QSQVAD-------------RK 124

Query: 68  RLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIG 127
           + DR+YS+I DNY SL QV+ AL  AGLESSNLIVGIDFTKSNEWTG++SFNR+SLHH+ 
Sbjct: 125 KFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLS 184

Query: 128 HGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDICCNGFEEVLTQ 187
           +  NPYEQAI+IIG+TL+AFDEDNLIPC+GFGDASTHDQDVFSFYP+   CNGFEEVL +
Sbjct: 185 NTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLAR 244

Query: 188 YREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQE 247
           YREIVP L+LAGPTSFAPIIEMA T+VE+S GQYHVL+IIADGQVTRSVDT+HG+LS QE
Sbjct: 245 YREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQE 304

Query: 248 QKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDL 307
           QKT+DAIV+AS  PLSI+LVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIMSKN D 
Sbjct: 305 QKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQ 364

Query: 308 SRKETEFALAALMEIPSQYKATLELGILG 336
           SRKETEFAL+ALMEIP QYKAT+EL +LG
Sbjct: 365 SRKETEFALSALMEIPPQYKATIELNLLG 393
E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked multiubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1 Back     alignment and function description
>sp|Q09221|CPNA2_CAEEL Copine family protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=4 Back     alignment and function description
>sp|Q99829|CPNE1_HUMAN Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1 Back     alignment and function description
>sp|Q8C166|CPNE1_MOUSE Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1 Back     alignment and function description
>sp|Q96FN4|CPNE2_HUMAN Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3 Back     alignment and function description
>sp|P59108|CPNE2_MOUSE Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1 Back     alignment and function description
>sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1 Back     alignment and function description
>sp|Q9DC53|CPNE8_MOUSE Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2 Back     alignment and function description
>sp|Q86YQ8|CPNE8_HUMAN Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
359473120442 PREDICTED: E3 ubiquitin-protein ligase R 0.8 0.751 0.799 1e-152
224102381434 predicted protein [Populus trichocarpa] 0.812 0.776 0.801 1e-151
356525421459 PREDICTED: E3 ubiquitin-protein ligase R 0.845 0.764 0.759 1e-150
356511063460 PREDICTED: E3 ubiquitin-protein ligase R 0.850 0.767 0.755 1e-150
356567530459 PREDICTED: E3 ubiquitin-protein ligase R 0.787 0.712 0.782 1e-147
449435001433 PREDICTED: E3 ubiquitin-protein ligase R 0.792 0.759 0.764 1e-146
255548002478 copine, putative [Ricinus communis] gi|2 0.746 0.648 0.802 1e-146
255540451433 copine, putative [Ricinus communis] gi|2 0.824 0.789 0.735 1e-143
449440616432 PREDICTED: E3 ubiquitin-protein ligase R 0.790 0.759 0.755 1e-143
224133728414 predicted protein [Populus trichocarpa] 0.734 0.736 0.817 1e-143
>gi|359473120|ref|XP_002282202.2| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Vitis vinifera] gi|296081383|emb|CBI16816.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/339 (79%), Positives = 295/339 (87%), Gaps = 7/339 (2%)

Query: 1   MGGKSSKSSSGSHYSSRGSASSSAWNNYGYP---PPPSPYPQASPYYTPQQHYAPSPSFN 57
           MGGKSSK  SG  Y S     SS++N++GY    P    YP A PY+TPQ H  P P + 
Sbjct: 1   MGGKSSKRRSGREYPS---FESSSFNHHGYSQSQPYEEAYP-AQPYHTPQHHSPPPPRYY 56

Query: 58  YGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRS 117
            G+QTP    +LDR+YSRI DNY SLDQVT ALA AGLESSNLIVGIDFTKSNEWTGSRS
Sbjct: 57  SGAQTPHRHPQLDRRYSRIADNYNSLDQVTAALAQAGLESSNLIVGIDFTKSNEWTGSRS 116

Query: 118 FNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYPDDIC 177
           FNR+SLHHIG GQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQD+FSFY D+  
Sbjct: 117 FNRKSLHHIGRGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDIFSFYQDERP 176

Query: 178 CNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIADGQVTRSVD 237
           CNGFEEVL +YRE+VPSLRLAGPTSFAPIIEMA+TIVEKSGGQYHVLLIIADGQVTRSVD
Sbjct: 177 CNGFEEVLMRYRELVPSLRLAGPTSFAPIIEMASTIVEKSGGQYHVLLIIADGQVTRSVD 236

Query: 238 TQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNF 297
           TQHGQLSSQEQKTIDAIV+AS++PLSIILVGVGDGPWD+M+EFDDNIPARAFDNFQFVNF
Sbjct: 237 TQHGQLSSQEQKTIDAIVKASKYPLSIILVGVGDGPWDVMREFDDNIPARAFDNFQFVNF 296

Query: 298 TEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILG 336
           TEIMSKN+D SR +TEFALAALMEIPSQYKAT++L  LG
Sbjct: 297 TEIMSKNVDSSRTQTEFALAALMEIPSQYKATIDLNTLG 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102381|ref|XP_002312658.1| predicted protein [Populus trichocarpa] gi|222852478|gb|EEE90025.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525421|ref|XP_003531323.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] Back     alignment and taxonomy information
>gi|356511063|ref|XP_003524251.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] Back     alignment and taxonomy information
>gi|356567530|ref|XP_003551971.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] Back     alignment and taxonomy information
>gi|449435001|ref|XP_004135284.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] gi|449494850|ref|XP_004159664.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255548002|ref|XP_002515058.1| copine, putative [Ricinus communis] gi|223546109|gb|EEF47612.1| copine, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255540451|ref|XP_002511290.1| copine, putative [Ricinus communis] gi|223550405|gb|EEF51892.1| copine, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449440616|ref|XP_004138080.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] gi|449525732|ref|XP_004169870.1| PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224133728|ref|XP_002321646.1| predicted protein [Populus trichocarpa] gi|222868642|gb|EEF05773.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2084218489 RGLG1 "RING domain ligase1" [A 0.756 0.642 0.716 8.4e-121
TAIR|locus:2008570453 AT1G67800 [Arabidopsis thalian 0.681 0.624 0.790 2.3e-119
TAIR|locus:2145643468 RGLG2 "RING domain ligase2" [A 0.684 0.606 0.783 2.9e-119
TAIR|locus:2206395401 RGLG4 "RING DOMAIN LIGASE 4" [ 0.708 0.733 0.603 4.8e-94
TAIR|locus:2160821367 RGLG3 "RING DOMAIN LIGASE 3" [ 0.624 0.705 0.687 2.1e-93
DICTYBASE|DDB_G0272196284 DDB_G0272196 "copine family pr 0.595 0.869 0.516 1.1e-64
WB|WBGene000064951107 cpna-1 [Caenorhabditis elegans 0.590 0.221 0.471 4.3e-56
MGI|MGI:2386621536 Cpne1 "copine I" [Mus musculus 0.544 0.421 0.344 7.7e-26
UNIPROTKB|E2R9N5537 CPNE1 "Uncharacterized protein 0.544 0.420 0.340 1.3e-25
UNIPROTKB|F1S4V8537 CPNE1 "Uncharacterized protein 0.544 0.420 0.340 9.8e-25
TAIR|locus:2084218 RGLG1 "RING domain ligase1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1168 (416.2 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
 Identities = 230/321 (71%), Positives = 263/321 (81%)

Query:    49 HYAPSPSFNYGSQTPQPQRRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTK 108
             +Y P PS    SQ    +++ DR+YS+I DNY SL QV+ AL  AGLESSNLIVGIDFTK
Sbjct:   110 NYPPPPS---QSQVAD-RKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTK 165

Query:   109 SNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDV 168
             SNEWTG++SFNR+SLHH+ +  NPYEQAI+IIG+TL+AFDEDNLIPC+GFGDASTHDQDV
Sbjct:   166 SNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDV 225

Query:   169 FSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGGQYHVLLIIA 228
             FSFYP+   CNGFEEVL +YREIVP L+LAGPTSFAPIIEMA T+VE+S GQYHVL+IIA
Sbjct:   226 FSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIA 285

Query:   229 DGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARA 288
             DGQVTRSVDT+HG+LS QEQKT+DAIV+AS  PLSI+LVGVGDGPWDMM+EFDDNIPARA
Sbjct:   286 DGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARA 345

Query:   289 FDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGHAVNVEKTSNHA 348
             FDNFQFVNFTEIMSKN D SRKETEFAL+ALMEIP QYKAT+EL +LG  V         
Sbjct:   346 FDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLG--VRNGNIPQRI 403

Query:   349 PFVGPQYRRESGFIRQFAPRF 369
             P + P  +  S F     P F
Sbjct:   404 P-LPPPVQSGSSFSSSRIPNF 423
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009690 "cytokinin metabolic process" evidence=IGI;RCA
GO:0009850 "auxin metabolic process" evidence=IGI
GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA
GO:0080148 "negative regulation of response to water deprivation" evidence=IGI
TAIR|locus:2008570 AT1G67800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145643 RGLG2 "RING domain ligase2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206395 RGLG4 "RING DOMAIN LIGASE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160821 RGLG3 "RING DOMAIN LIGASE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272196 DDB_G0272196 "copine family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00006495 cpna-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:2386621 Cpne1 "copine I" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9N5 CPNE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4V8 CPNE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030728001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (442 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
cd01459254 cd01459, vWA_copine_like, VWA Copine: Copines are 1e-102
pfam07002146 pfam07002, Copine, Copine 4e-68
smart00327175 smart00327, VWA, von Willebrand factor (vWF) type 3e-07
>gnl|CDD|238736 cd01459, vWA_copine_like, VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information 
 Score =  303 bits (779), Expect = e-102
 Identities = 126/274 (45%), Positives = 157/274 (57%), Gaps = 43/274 (15%)

Query: 76  IDDNYKSLDQVT----------GALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHH 125
           I   YKS  +VT               AGLES NLIV IDFTKSN W G +    RSLH+
Sbjct: 1   IKKVYKSSGEVTLTDCRVQPTFLDYRSAGLES-NLIVAIDFTKSNGWPGEK----RSLHY 55

Query: 126 IGHGQ-NPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYP---DDICCNGF 181
           I  G+ NPY++AI I+G+ L  +D D LIP FGFG   T DQ VFSF+P   +   C GF
Sbjct: 56  ISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPECQGF 115

Query: 182 EEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKS--GGQYHVLLIIADGQVTRSVDTQ 239
           E VL  YRE +P++ L+GPT+FAP+I  A  I + S    +YH+LLII DG++T   +  
Sbjct: 116 EGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNE-- 173

Query: 240 HGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDD-------NIPARAFDNF 292
                     TI AIV+AS++PLSI++VGVGDGP+D M+  DD       +      D  
Sbjct: 174 ----------TIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIV 223

Query: 293 QFVNFTEIMSKNMDLSRKETEFALAALMEIPSQY 326
           QFV FTE MS        E   A AAL EIPSQ 
Sbjct: 224 QFVPFTEFMSNA---GNPEAALATAALAEIPSQL 254

They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding. Length = 254
>gnl|CDD|219263 pfam07002, Copine, Copine Back     alignment and domain information
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG1327529 consensus Copine [Signal transduction mechanisms] 100.0
cd01459254 vWA_copine_like VWA Copine: Copines are phospholip 100.0
PF07002146 Copine: Copine; InterPro: IPR010734 This represent 100.0
PF10138200 vWA-TerF-like: vWA found in TerF C terminus ; Inte 99.98
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 99.81
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 98.85
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.75
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 98.6
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.6
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 98.57
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 98.52
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 98.48
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.36
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 98.35
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.34
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.33
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.23
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.12
cd01470198 vWA_complement_factors Complement factors B and C2 98.08
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 98.08
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.07
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 98.05
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 98.02
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 97.95
PF13768155 VWA_3: von Willebrand factor type A domain 97.9
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 97.83
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 97.77
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 97.77
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.75
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.73
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 97.72
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 97.67
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 97.58
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.51
PRK13685326 hypothetical protein; Provisional 97.51
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 97.5
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.47
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 97.32
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.17
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 97.13
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.06
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.06
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 96.95
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 96.85
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 96.74
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 96.35
PRK10997487 yieM hypothetical protein; Provisional 95.68
PF05762222 VWA_CoxE: VWA domain containing CoxE-like protein; 95.46
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 95.42
COG4245207 TerY Uncharacterized protein encoded in toxicity p 92.96
COG2425437 Uncharacterized protein containing a von Willebran 84.91
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 83.02
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 82.05
>KOG1327 consensus Copine [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-78  Score=628.82  Aligned_cols=255  Identities=48%  Similarity=0.728  Sum_probs=237.0

Q ss_pred             chhhccccccccccccHHHHHHHHHhcCCceeceEEEEeccCCCCCCCCCCCCCCCccccCC-CCCHHHHHHHHHhhccc
Q 042752           67 RRLDRKYSRIDDNYKSLDQVTGALAHAGLESSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGH-GQNPYEQAISIIGKTLS  145 (415)
Q Consensus        67 ~~~~~~~~~I~~~yssld~V~~aL~~~Gles~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~-~~N~YqqAI~~Ig~iL~  145 (415)
                      ++++.++..+.+.|+++++++-++..+|++++||+||||||+||+|++.    +.|||||++ .+|+||+||++||+||+
T Consensus       255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~----~sSLHyi~p~~~N~Y~~Ai~~vG~~lq  330 (529)
T KOG1327|consen  255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRN----PSSLHYIDPHQPNPYEQAIRSVGETLQ  330 (529)
T ss_pred             hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCC----CCcceecCCCCCCHHHHHHHHHhhhhc
Confidence            3456789999999999999999999999999999999999999999875    459999995 78999999999999999


Q ss_pred             ccCCCCccceEeeCCCCCC---CCC--ccccCCCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--
Q 042752          146 AFDEDNLIPCFGFGDASTH---DQD--VFSFYPDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--  218 (415)
Q Consensus       146 ~YD~Dk~iP~fGFGa~~t~---d~~--vFsf~~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--  218 (415)
                      +||+||+||||||||+.+.   .++  +|+|+|.+++|+|++|||++||+++|+|+|+|||+|+|||++|+++|+++.  
T Consensus       331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~  410 (529)
T KOG1327|consen  331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT  410 (529)
T ss_pred             ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence            9999999999999999665   344  456778999999999999999999999999999999999999999999886  


Q ss_pred             -CceEEEEEEeCCccccccccccCCCchhHHHHHHHHHHhccCCeEEEEEecccCCCccccccCCCCCC-------Cccc
Q 042752          219 -GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPA-------RAFD  290 (415)
Q Consensus       219 -~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaIV~AS~lPLSIIiVGVGd~~F~~Me~LDd~~~~-------R~rD  290 (415)
                       ++||||||||||+|||            |++|++|||.||++|||||||||||+||++|++||++++.       |.||
T Consensus       411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD  478 (529)
T KOG1327|consen  411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD  478 (529)
T ss_pred             CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence             8999999999999997            8999999999999999999999999999999999998776       7899


Q ss_pred             ceecccchhhhhhccccchhHHHHHHHHHHHhHHHHHHHHHh-CCCCC
Q 042752          291 NFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLEL-GILGH  337 (415)
Q Consensus       291 NvQFV~f~di~~k~~~~~~~e~~LA~~aL~EIP~Q~~ay~~l-giL~~  337 (415)
                      |||||+|+||+.++.+.+.++++||+.+|||||+||++||++ |+++.
T Consensus       479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~  526 (529)
T KOG1327|consen  479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK  526 (529)
T ss_pred             ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence            999999999999877777889999999999999999999999 45543

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium Back     alignment and domain information
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines Back     alignment and domain information
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 51/373 (13%), Positives = 97/373 (26%), Gaps = 135/373 (36%)

Query: 61  QTPQPQRRLDR-------KYSRI---------DDNYKSLDQVTGALAHAGLESSNLIVGI 104
            +        R       K   +           NYK L      +     + S +    
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMY 112

Query: 105 DFTKSNEWTGSRSFN-------------RRSLHHIGHGQNPYEQAISI-----IGKT--- 143
              +   +  ++ F              R++L  +   +N     + I      GKT   
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----VLIDGVLGSGKTWVA 167

Query: 144 LSAFDEDNLIPCFGFGDASTHDQDVF--SFYPDDICCNGFEEVLTQ----YREIVPSLRL 197
           L       +     F         +F  +       CN  E VL        +I P+   
Sbjct: 168 LDVCLSYKVQCKMDFK--------IFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 198 AGPTSFAPIIEMATTIVEKS----GGQY-HVLLII----------------------ADG 230
               S    + + +   E         Y + LL++                         
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 231 QVTRSVDTQHGQ----------LSSQEQKTIDAIV----------QASE-FPLSIILVGV 269
           QVT  +                L+  E K++              +     P  + ++  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA- 334

Query: 270 GDGPWDMMKEFDDNIPARAFDNFQFVN---FTEIMSKNMD-LSRKETE---FALAALME- 321
                + +++      A  +DN++ VN    T I+  +++ L   E       L+     
Sbjct: 335 -----ESIRDG----LAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 322 --IPSQYKATLEL 332
             IP+     L L
Sbjct: 385 AHIPTI---LLSL 394
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.45
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.4
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.32
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.25
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.22
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 98.12
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.08
4fx5_A464 VON willebrand factor type A; structural genomics, 98.06
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.05
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.0
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 97.99
2b2x_A223 Integrin alpha-1; computational design, antibody-a 97.95
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 97.91
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 97.88
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 97.85
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 97.82
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 97.75
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 97.72
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 97.7
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 97.69
3hrz_D 741 Complement factor B; serine protease, glycosilated 97.63
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 97.28
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.06
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 96.97
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 96.88
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 96.39
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 96.21
2nvo_A535 RO sixty-related protein, RSR; alpha helical repea 95.18
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 86.47
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 85.23
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
Probab=98.45  E-value=2.7e-06  Score=80.22  Aligned_cols=151  Identities=14%  Similarity=0.190  Sum_probs=102.5

Q ss_pred             eeceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHH-HHHHHHHhhcccccCC---CCccceEeeCCCCCCCCCccccC
Q 042752           97 SSNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPY-EQAISIIGKTLSAFDE---DNLIPCFGFGDASTHDQDVFSFY  172 (415)
Q Consensus        97 s~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~Y-qqAI~~Ig~iL~~YD~---Dk~iP~fGFGa~~t~d~~vFsf~  172 (415)
                      .+++++.||-|+|++.                  ..+ +++...+..++..++.   +-.+-++.|+....   .+|.|.
T Consensus        21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~   79 (281)
T 4hqf_A           21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH   79 (281)
T ss_dssp             CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred             ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence            4899999999999952                  133 5566666666666664   66799999987642   245554


Q ss_pred             CCCCCcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcCC---ceEEEEEEeCCccccccccccCCCchhHHH
Q 042752          173 PDDICCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSGG---QYHVLLIIADGQVTRSVDTQHGQLSSQEQK  249 (415)
Q Consensus       173 ~~~p~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~~---~Y~VLLIITDG~ItD~~d~~~~~~~~d~~e  249 (415)
                      ....  ...+.++++-..+.......|-|+...-|+.|.+.....+.   .-.++|+||||.-+|            ...
T Consensus        80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~  145 (281)
T 4hqf_A           80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD  145 (281)
T ss_dssp             SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred             ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence            3321  13455555444332234468999999999999887665422   468899999998775            345


Q ss_pred             HHHHHHHhccCCeEEEEEecccC-CCccccccCC
Q 042752          250 TIDAIVQASEFPLSIILVGVGDG-PWDMMKEFDD  282 (415)
Q Consensus       250 TidaIV~AS~lPLSIIiVGVGd~-~F~~Me~LDd  282 (415)
                      ..+++..+...-+-|..||||+. +-+.|+.+-+
T Consensus       146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~  179 (281)
T 4hqf_A          146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG  179 (281)
T ss_dssp             HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence            66666666677899999999985 5555666643
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.35
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.85
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 97.84
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.61
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 97.59
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.49
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.48
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.38
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.23
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.23
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 97.16
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 96.46
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 81.32
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9e-07  Score=75.66  Aligned_cols=146  Identities=15%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             eceEEEEeccCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHhhcccccCCC-CccceEeeCCCCCCCCCccccCCCCC
Q 042752           98 SNLIVGIDFTKSNEWTGSRSFNRRSLHHIGHGQNPYEQAISIIGKTLSAFDED-NLIPCFGFGDASTHDQDVFSFYPDDI  176 (415)
Q Consensus        98 ~nliVaIDFT~SN~~tg~~s~~~~SLHyi~~~~N~YqqAI~~Ig~iL~~YD~D-k~iP~fGFGa~~t~d~~vFsf~~~~p  176 (415)
                      +.+++.||-|+|++                   +.+++....+..++..|... -.+-+.-|++...   .+|+++.+. 
T Consensus         6 ~Div~llD~S~Sm~-------------------~~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~---~~~~l~~~~-   62 (181)
T d1shux_           6 FDLYFVLDKSGSVA-------------------NNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQAT---IILPLTGDR-   62 (181)
T ss_dssp             EEEEEEEECSGGGG-------------------GGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEE---EEEEEECCH-
T ss_pred             eEEEEEEeCCCCcc-------------------cCHHHHHHHHHHHHHHhcCCCCEEEEEEeecceE---EEEEecCCH-
Confidence            78999999998883                   12344555555566666543 3477788877532   245664311 


Q ss_pred             CcCCHHHHHHHHHhhCCceeecCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCccccccccccCCCchhHHHHHHHH
Q 042752          177 CCNGFEEVLTQYREIVPSLRLAGPTSFAPIIEMATTIVEKSG--GQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAI  254 (415)
Q Consensus       177 ~c~G~egVL~aYr~~l~~v~LsGPT~FAPVI~~ai~iv~~s~--~~Y~VLLIITDG~ItD~~d~~~~~~~~d~~eTidaI  254 (415)
                        .-+.++++    .++.+...|-|+....++.+.+......  ....++++||||..++.          +.....++.
T Consensus        63 --~~~~~~l~----~l~~~~~~g~t~~~~al~~~~~~~~~~~~~~~~~~ivliTDG~~~~~----------~~~~~~~~~  126 (181)
T d1shux_          63 --GKISKGLE----DLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEA  126 (181)
T ss_dssp             --HHHHHHHH----HHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHH
T ss_pred             --HHHHHHhh----hcccccCCCcchHHHHHHHHHHHhhhcccCCCceEEEEecCCCCCCC----------ccHHHHHHH
Confidence              12333333    3445667788999999999988876432  34688999999987752          234455566


Q ss_pred             HHhccCCeEEEEEecccCCCccccccCC
Q 042752          255 VQASEFPLSIILVGVGDGPWDMMKEFDD  282 (415)
Q Consensus       255 V~AS~lPLSIIiVGVGd~~F~~Me~LDd  282 (415)
                      ..+.+.-+.|+.||||+.+-..|+++-+
T Consensus       127 ~~~k~~gv~v~~vgig~~~~~~L~~ia~  154 (181)
T d1shux_         127 KISRSLGASVYCVGVLDFEQAQLERIAD  154 (181)
T ss_dssp             HHHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred             HHHHHCCCEEEEEEeCccCHHHHHHHhC
Confidence            6677788999999999877777777654
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure