Citrus Sinensis ID: 042765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
IHQHIFSVNQHTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQHNSNQSEQVIDTDVERVLTHQQNQQQNYVHYQEVSCSSTDMMSEQRLSGGMGFASSVTEHSGVTDQMHKHQYQQILIQFGMSLPAIYGNDDESF
Secondary Structure (PSIPRED)
cccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEEEEcccccccccccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHccHHcccccccEEEEEccccccccccccccHHHHHHccccEEEEccccEEccccccEEEEEEEEEEEEccccccccEEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
IHQHIFSVNQHTIELTIFFsnkckntdlflphgfqfrpsDEELIEHYLKKKVSGILIPLAEYfirdcnlyetkpseiwdshggpffnidedLYFFTQLKkksskgsridrkvssssgawqwedagkdivsgqskvkigskkrfryekkgcedygpwimhectlhfpknqatNYVLCRLrknqptgqdkeysyankrklsdfqhnsnqseqvIDTDVERVLTHQQNQQQNYVHYqevscsstdmmseqrlsggmgfassvtehsgvtdqMHKHQYQQILIQFGmslpaiygnddesf
Flexible Loop (DISEMBL)
ihqhifsvnqhTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKkksskgsridrkvssssgawqwedagkdivsgqskvkigskkrfryeKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQHNSNQSEQVIDTDVERVLTHQQNQQQNYVHYQEVSCSSTDMMSEQRLSGGMGFASSVTEHSGVTDQMHKHQYQQILIQFGMSLPAIYGNDDESF
Low Complexity Region (SEG)
IHQHIFSVNQHTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQHNSNQSEQVIDTDVERVLThqqnqqqnyvhyqevSCSSTDMMSEQRLSGGMGFASSVTEHSGVTDQMHKHQYQQILIQFGMSLPAIYGNDDESF
Disordered region (IsUnstruct)
****IFSVNQHTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQL********************WQWE*****IV*****VKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLR***************************************************VH**************************************KHQYQQILIQFGMSLPAIY*******
Disordered Region (DISOPRED)
*******************************HGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLR*********************************************************************************************************************
Disordered Region (DISEMBL)
IHQHIFSVNQHTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLK******************AWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQHNSNQSEQVIDTDVERVLTHQQNQQQNYVHYQEVSCSSTDMMSEQRLSGGMGFASSVTEHSGVTDQMHKHQYQQILIQFGMSLPAIYGNDDESF
Disordered Region (DISPRO)
IHQHIFSVNQHTIELTIFFSNKCKN*DLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQP******************************************************CSSTDMMSEQRLSGGMGF***************KHQYQQILIQFGMSLPAIYG******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IHQHIFSVNQHTIELTIFFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQHNSNQSEQVIDTDVERVLTHQQNQQQNYVHYQEVSCSSTDMMSEQRLSGGMGFASSVTEHSGVTDQMHKHQYQQILIQFGMSLPAIYGNDDESF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q8H4S4	425	NAC transcription factor	no	no	0.503	0.350	0.335	3e-14
A2YMR0	425	NAC transcription factor	N/A	no	0.503	0.350	0.323	2e-13
A0SPJ6	396	NAC transcription factor	N/A	no	0.648	0.484	0.272	3e-13
Q9C932	317	NAC domain-containing pro	no	no	0.641	0.599	0.316	3e-13
Q9FWX2	395	NAC domain-containing pro	no	no	0.479	0.359	0.335	9e-13
A0SPJ9	402	NAC transcription factor	N/A	no	0.648	0.477	0.268	1e-12
Q52QH4	318	NAC domain-containing pro	no	no	0.483	0.449	0.331	3e-12
Q7GCL7	489	NAC domain-containing pro	no	no	0.486	0.294	0.355	4e-12
Q9LDY8	317	NAC domain-containing pro	no	no	0.513	0.479	0.329	4e-12
A0SPJ3	405	NAC transcription factor	N/A	no	0.418	0.306	0.335	9e-12

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ HYLKKK + + +P+    I + +LY+  P   WD      F  +
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVT--IIAEVDLYKFDP---WDLPEKANFG-E 82

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIV-SGQSKVKIGSKKRFRY--- 145
           ++ YFF+   +K   G+R +R  +++SG W+     K I+ SG ++ K+G KK   +   
Sbjct: 83  QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRG 140

Query: 146 -EKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDK 188
              KG +    WIMHE  L    + A      R      TG  K
Sbjct: 141 KPPKGVKTN--WIMHEYRLTDTSSSAAAVATTRRPPPPITGGSK 182

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 15/164 (9%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ HYLKKK + + +P+    I + +LY+  P E+ +      F  +
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVT--IIAEVDLYKFDPWELPEKAN---FG-E 82

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIV-SGQSKVKIGSKKRFRY--- 145
           ++ YFF+   +K   G+R +R  +++SG W+     K I+ SG ++ K+G KK   +   
Sbjct: 83  QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRG 140

Query: 146 -EKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDK 188
              KG +    WIMHE  L    + A      R      TG  +
Sbjct: 141 KPPKGVKTN--WIMHEYRLTDTSSSAAAVATTRQPPPPITGGSR 182

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 43/235 (18%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ HYLKKK + + +P+    I + +LY+  P   W+      F  +
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVT--IITEVDLYKFDP---WELPEKATFG-E 81

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIV-SGQSKVKIGSKKRFRY--- 145
           ++ YFF+   +K   G+R +R  +++SG W+     K I+ SG  + K+G KK   +   
Sbjct: 82  QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPILASGCGREKVGVKKALVFYRG 139

Query: 146 -EKKGCEDYGPWIMHECTLHFPKNQAT-------------------NYVLCRLRK--NQP 183
              KG +    WIMHE  L    + AT                   ++VLCR+ K  N+ 
Sbjct: 140 KPPKGLKTN--WIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIYKKINKA 197

Query: 184 TGQDKEYSYANKRKLSD-------FQHNSNQSEQVIDTDVERVLTHQQNQQQNYV 231
              D++ S   +  + D       +            ++ + +L HQ + + N++
Sbjct: 198 AAGDQQRSMECEDSVEDAVTAYPLYATAGMTGAGAHGSNYDSLLHHQDSHEDNFL 252

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 28/218 (12%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct: 10  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 64

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F  +++ YFF+   +K   GSR +R     +G+  W+  G D +      ++G KK   +
Sbjct: 65  FG-EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKIISTEGQRVGIKKALVF 119

Query: 146 ----EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQDKEY--SYAN 194
                 KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q + Y    AN
Sbjct: 120 YIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQKQVYDNGIAN 177

Query: 195 KRKLSDFQHNSNQSEQVIDTDVERVLT--HQQNQQQNY 230
            R   +F +N   S     +  E VL   HQ+   +N+
Sbjct: 178 AR---EFSNNGTSSTTSSSSHFEDVLDSFHQEIDNRNF 212

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           +P GF+F P+DEEL+++YL+KKV+   I +   FI+D +LY+ +P   WD         +
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEID--FIKDIDLYKIEP---WDLQELCKIGHE 61

Query: 90  E--DLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEK 147
           E  D YFF+   KK   G+R +R    ++ A  W+  G+D         IG +K   + K
Sbjct: 62  EQSDWYFFSHKDKKYPTGTRTNR----ATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYK 117

Query: 148 KGCED--YGPWIMHECTLHFPKN---QATNYVLCRLRK 180
               +     WIMHE  L   +N   Q   +V+CR+ K
Sbjct: 118 GRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFK 155

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 43/235 (18%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ HYLKKK + + +P+    I + +LY+  P E+ +      F  +
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVT--IIAEVDLYKFDPWELPEKA---TFG-E 81

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIV-SGQSKVKIGSKKRFRY--- 145
           ++ YFF+   +K   G+R +R  +++SG W+     K I+ SG  + K+G K    +   
Sbjct: 82  QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPILASGCGREKVGVKXALVFYRG 139

Query: 146 -EKKGCEDYGPWIMHECTLHFPKNQAT-------------------NYVLCRLRK--NQP 183
              KG +    WIMHE  L    + A                    ++VLCR+ K  N+ 
Sbjct: 140 KPPKGLKTN--WIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIYKKINKA 197

Query: 184 TGQDKEYSYANKRKLSD-------FQHNSNQSEQVIDTDVERVLTHQQNQQQNYV 231
              D++ S   +  + D       +       E    ++   +L HQ + + N++
Sbjct: 198 AAADQQRSMECEDSVEDAVTAYPPYATACMTGEGAHGSNYASLLHHQDSHEDNFL 252

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 23/166 (13%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
            +L LP GF+F P+DEEL+ HYL +KV+   +P+    I + +LY+  P   WD      
Sbjct: 17  AELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVP--IIAEVDLYKLDP---WDLPEKAL 71

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F   E  YFFT   +K   GSR +R  ++  G W+   A K +    S   +G KK   +
Sbjct: 72  FGRKE-WYFFTPRDRKYPNGSRPNR--AAGRGYWKATGADKPVAPKGSARTVGIKKALVF 128

Query: 146 ----EKKGCEDYGPWIMHECTL----HFPKNQATN-----YVLCRL 178
                 +G +    WIMHE  L      P  +  +     +VLCRL
Sbjct: 129 YSGKAPRGVKTD--WIMHEYRLADADRAPGGKKGSQKLDEWVLCRL 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 79/163 (48%), Gaps = 19/163 (11%)

Query: 27  DLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEY-FIRDCNLYETKPSEIWDSHGGPF 85
           D+ LP GF F P D ELI HYLKKK+ G  I   EY  I + ++Y+ +P ++      P 
Sbjct: 6   DMVLPPGFGFHPKDTELISHYLKKKIHGQKI---EYEIIPEVDIYKHEPWDLPAKCDVP- 61

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
              D   +FF    +K   GSR +R    ++ A  W+  GKD      K  IG+KK   +
Sbjct: 62  -TQDNKWHFFAARDRKYPNGSRSNR----ATVAGYWKSTGKDRAIKMGKQTIGTKKTLVF 116

Query: 146 EKKGCEDYG---PWIMHECTLHFPKNQAT-----NYVLCRLRK 180
             +G    G    WIMHE  +   + QA       YVLCR+ K
Sbjct: 117 H-EGRPPTGRRTEWIMHEYYIDERECQACPDMKDAYVLCRITK 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 21/173 (12%)

Query: 28  LFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFN 87
           L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       F 
Sbjct: 12  LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQ--LIAEIDLYKFDP---WVLPSKALFG 66

Query: 88  IDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY-- 145
            +++ YFF+   +K   GSR +R     +G+  W+  G D V      ++G KK   +  
Sbjct: 67  -EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKVISTEGRRVGIKKALVFYI 121

Query: 146 --EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQDKEYS 191
               KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q + Y+
Sbjct: 122 GKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAYN 172

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 19/143 (13%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ HYLKKK + + +P+    I + +LY+  P E+ +      F  +
Sbjct: 33  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVT--IIAEVDLYKFDPWELPEKA---TFG-E 86

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVS-----GQSKVKIGSKKRFR 144
           ++ YFF+   +K   G+R +R  +++SG W+     K I++     G  + K+G KK   
Sbjct: 87  QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPILASGTGCGLVREKLGVKKALV 144

Query: 145 Y----EKKGCEDYGPWIMHECTL 163
           +      KG +    WIMHE  L
Sbjct: 145 FYRGKPPKGLKTN--WIMHEYRL 165

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
224054492	322	NAC domain protein, IPR003441 [Populus t	0.510	0.468	0.4	3e-21
255577785	328	transcription factor, putative [Ricinus	0.868	0.783	0.296	6e-21
255580284	508	transcription factor, putative [Ricinus	0.493	0.287	0.392	5e-20
255584644	376	NAC domain-containing protein, putative	0.5	0.393	0.396	7e-20
357439789	325	NAC domain protein [Medicago truncatula]	0.476	0.433	0.409	1e-19
449448878	306	PREDICTED: NAC domain-containing protein	0.537	0.519	0.390	1e-19
449442783	301	PREDICTED: NAC domain-containing protein	0.567	0.558	0.376	3e-19
449457267	211	PREDICTED: NAC domain-containing protein	0.631	0.886	0.349	8e-19
357512399	210	NAC domain-containing protein [Medicago	0.516	0.728	0.386	8e-19
255577787	316	conserved hypothetical protein [Ricinus	0.604	0.566	0.358	2e-18

>gi|224054492|ref|XP_002298287.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845545|gb|EEE83092.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 9/160 (5%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFN-- 87
           +P G +F PSDE L+ HYL KK     +P   Y +R+C+LY  +P EIW   GG      
Sbjct: 18  MPTGCRFAPSDEVLVIHYLSKKGKNEPLPCP-YAVRECDLYGREPEEIWKEFGGDRLKRK 76

Query: 88  IDEDL--YFFTQLKKKSSK---GSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKR 142
           ID+DL  +FFT+LKKKS      SRIDR V ++ G W  E A + I   ++K  IGSKKR
Sbjct: 77  IDQDLGLFFFTRLKKKSGTDHGSSRIDRSVGNNIGTWHEECALRSITCSETKKNIGSKKR 136

Query: 143 FRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQ 182
           F Y+     + G    H   +  P N  +++V+C+L++ +
Sbjct: 137 FVYKSNKSHNRGRVSWHMLEISLPDN-TSDHVVCQLKRKE 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577785|ref|XP_002529767.1| transcription factor, putative [Ricinus communis] gi|223530765|gb|EEF32633.1| transcription factor, putative [Ricinus communis]

 Score =  107 bits (267), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 146/283 (51%), Gaps = 26/283 (9%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGI-LIPLAEYFIRDCNLYETK-PSEIWDSHGGPFFN 87
           LP G +F+P+DEEL+  YL KK + + L  +    +  C+LY  K P E+WD        
Sbjct: 8   LPSGCRFKPTDEELVAIYLFKKTNNLNLSDVENMVVPVCDLYGDKEPWELWDQFAQNQLF 67

Query: 88  IDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGK------DIVSGQSKVKIGSKK 141
           I+ DL+FFT+LKKK  K SRI R+V    G W  E+ G+      D+ + +  +   +KK
Sbjct: 68  INGDLFFFTELKKK-PKSSRILRRV--GKGTWHGENKGEPVNVLVDVGNAKQLMIQATKK 124

Query: 142 RFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDF 201
           RF Y  +    +  WI+HE +L    N +TN+VLCRLR N  +  D + S     ++S  
Sbjct: 125 RFSYRNQNSAHHCRWILHEFSL---DNVSTNWVLCRLRNNHVS--DSDNSVLVLERVSSK 179

Query: 202 QHNSNQSEQVIDTDV---ERVLTHQQNQQQNYVHYQEVSCSSTDMMSEQRLSGGMGFASS 258
           + N+   +Q  +T++   E+ L    ++  + +   E   S   ++  ++ +G +G    
Sbjct: 180 RKNAEADDQCPNTEIVPSEKRL-RTSDKCTDLIARTEFDSSKACIVVAEQDNGFVG-GHD 237

Query: 259 VTEHSGVTDQMHKHQ----YQQI-LIQFGMSLPAIYGNDDESF 296
           + ++  + +  +  +    Y ++ +I +G  +PA+  +D ESF
Sbjct: 238 LPKYGSIANADYDFENDSTYSELSMICYGSMVPAVSNDDVESF 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580284|ref|XP_002530971.1| transcription factor, putative [Ricinus communis] gi|223529447|gb|EEF31406.1| transcription factor, putative [Ricinus communis]

 Score =  104 bits (259), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 22/168 (13%)

Query: 28  LFLPHGFQFRPSDEELIEHYLKKKVSGILIPLA-EYFIRDCNLY-ETKPSEIWDSHGGPF 85
           L LP G++F P+D+EL+ HYL  +V+    PL+ +YFI + ++Y + +P +IWDS G   
Sbjct: 11  LILPPGYRFDPTDQELVLHYLLNRVA--RKPLSCQYFISEIDIYGDMEPWQIWDSLG--- 65

Query: 86  FNIDED-LYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFR 144
              D D LY FT LKK+++ GS I R++ S+ G+W  ED+GK+      K    ++KRFR
Sbjct: 66  -KADNDVLYVFTPLKKRAANGSTILRRIGSNGGSWHGEDSGKEFKLNGVK---WTQKRFR 121

Query: 145 YEKKGCEDY-GPWIMHECTLH-------FPKNQATN--YVLCRLRKNQ 182
           YE + C+ + G W+M E +L          K    N   VLCR++KN+
Sbjct: 122 YENRKCKPHDGAWLMQEYSLDQSLVNKIKEKRNDDNEIIVLCRIKKNE 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584644|ref|XP_002533045.1| NAC domain-containing protein, putative [Ricinus communis] gi|223527164|gb|EEF29335.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 11/159 (6%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLY-ETKPSEIWDSHGGPF-FN 87
           +P G++F P+D EL+ +YL  K++G L+P+    + D NLY + +P ++W+  GG   F 
Sbjct: 8   IPVGYRFNPTDCELVGYYLFNKLNGCLLPIDNMLVADTNLYGKDEPLQLWEKFGGNCSFY 67

Query: 88  IDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKD--IVSGQSKVKIGSKKRFRY 145
            D ++Y FT+LKK   KGSRI R V  + G W   DAGK   I + + ++  G+KK F Y
Sbjct: 68  SDGEIYLFTKLKK---KGSRILRSV-GAGGTWHGVDAGKPVRIKTNRGQLIEGTKKCFSY 123

Query: 146 EKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPT 184
                   G WIMHE +L    + + ++VLCRL+KN  T
Sbjct: 124 RNPNSIHDGCWIMHEFSLF---DISYDWVLCRLKKNFST 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439789|ref|XP_003590172.1| NAC domain protein [Medicago truncatula] gi|355479220|gb|AES60423.1| NAC domain protein [Medicago truncatula]

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 8/149 (5%)

Query: 38  PSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYET--KPSEIWDSHGGPFFNIDEDLYFF 95
           P+D+EL++ +L  K+    +P     I + +L+ T   P EIW+  G    N  +DLYFF
Sbjct: 13  PTDDELLQQFLYNKIHNKPLP-NHITILEHDLFGTAKNPWEIWEEFGTSNSNRGKDLYFF 71

Query: 96  TQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCEDYGP 155
           T LKKKS+  SR+ R +    G W+ ED+GK+I +      +G KKRFR+EK      G 
Sbjct: 72  TTLKKKSATSSRVVRTIGL--GRWEGEDSGKNIFAKDKNQILGMKKRFRFEKSDTSQDGG 129

Query: 156 WIMHECTLH---FPKNQATNYVLCRLRKN 181
           WI+HE +LH          NYVLCR RKN
Sbjct: 130 WILHEYSLHNSLISNPLDNNYVLCRFRKN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448878|ref|XP_004142192.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus] gi|449516019|ref|XP_004165045.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus]

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 23/182 (12%)

Query: 33  GFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYE-TKPSEIWDSHGGPFFNID-E 90
           G +FRP+D++L+ HYL  K+ G   P  +  + D +LY   +P EIW S GG    ID E
Sbjct: 17  GVKFRPTDQQLL-HYLHCKIYGQ--PYFQGAVFDFDLYGGVEPWEIWQSFGG----IDGE 69

Query: 91  DLYFFTQLKKKSSK----GSRIDRKVSSSSGAWQWEDAGKDI-VSGQSKVKIGSKKRFRY 145
           DLYFFT+LK+ ++      + I+RK+   +G W  E++   I V+   +  IG +KRFRY
Sbjct: 70  DLYFFTKLKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRY 129

Query: 146 EKKGCED-YGPWIMHECTLH--FPKNQAT--NYVLCRLRKNQPTGQ----DKEYSYANKR 196
           E +  E+ +G WIMHE +LH  + + +    NYVLCR+RKNQ   +    + E   +NK+
Sbjct: 130 ENESLEEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKK 189

Query: 197 KL 198
           ++
Sbjct: 190 RM 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442783|ref|XP_004139160.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus] gi|449485396|ref|XP_004157155.1| PREDICTED: NAC domain-containing protein 68-like [Cucumis sativus]

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 31/199 (15%)

Query: 23  CKNTDLFLPH--GFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYE-TKPSEIWD 79
           C    L L H  G +FRP+D++L+ HYL  K+ G   P  +  + D +LY   +P EIW 
Sbjct: 9   CGYLPLPLNHYVGLKFRPTDQQLL-HYLHCKIYGQ--PYFQGAVFDFDLYGGVEPWEIWQ 65

Query: 80  SHGGPFFNID-EDLYFFTQLKKKSSK----GSRIDRKVSSSSGAWQWEDAGKDI-VSGQS 133
           S GG    ID EDLYFFT+LK+ ++      + ++RK+   +G W  E++   I V+   
Sbjct: 66  SFGG----IDGEDLYFFTKLKRSTTNCGNLSTHVNRKIGLVNGTWSGENSASPIYVNENC 121

Query: 134 KVKIGSKKRFRYEKKGCED-YGPWIMHECTLH--FPKNQA--TNYVLCRLRKNQPTGQDK 188
           +  IG +KRFRYE +  E+ +G WIMHE ++H  + + +   +NYVLCR+RKN+      
Sbjct: 122 EEIIGYRKRFRYENESLEEHHGEWIMHEYSMHQRYLRCEGVDSNYVLCRMRKNERV---- 177

Query: 189 EYSYANKRKLSDFQHNSNQ 207
                 KRKL + Q  + Q
Sbjct: 178 ------KRKLLEIQGEAKQ 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457267|ref|XP_004146370.1| PREDICTED: NAC domain-containing protein 90-like [Cucumis sativus]

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 16/203 (7%)

Query: 29  FLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNI 88
            +P G+ F P++EEL+ +YL  KV G   P     + D  LY  +PS+IW    G    +
Sbjct: 5   LIPVGYIFCPTEEELLGYYLYNKVLGGQTPPLVLPVID--LYTQEPSQIWQQCRG----V 58

Query: 89  D-EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQ-SKVKIGSKKRFRYE 146
           D +D+YFFT L+KK S   RI RK+ S+ G W  E+  + + S     + +G+ KRFRYE
Sbjct: 59  DNQDIYFFTTLQKKKS---RIIRKIGSNGGTWSGENKPQQVFSSIIDNLLLGTMKRFRYE 115

Query: 147 KKGCEDYGPWIMHECTLH---FPKNQA-TNYVLCRLRKNQPTGQDKEYSYANKRKLSDFQ 202
           K   ++   WIM+E TL+    P+     +YVLC +RK +    +K    +NKR+     
Sbjct: 116 KSQVKEDCTWIMYEYTLNPSIVPEGLVHDSYVLCMIRK-KIVKSEKMVMASNKRRAMTSM 174

Query: 203 HNSNQSEQVIDTDVERVLTHQQN 225
           H  NQ+ + +    E V+  Q++
Sbjct: 175 HVDNQNHKRMKLQEEAVVDSQKD 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512399|ref|XP_003626488.1| NAC domain-containing protein [Medicago truncatula] gi|355501503|gb|AES82706.1| NAC domain-containing protein [Medicago truncatula]

 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 84/163 (51%), Gaps = 10/163 (6%)

Query: 36  FRPSDEELIEHYLKKKVSGILIPLAEYF-IRDCNLYET--KPSEIWDSHGGPFFNIDEDL 92
           F P+D+ELI  +L  ++     P+  Y  I D  L+     P EIW+          +DL
Sbjct: 11  FTPTDDELIRSFLYNRIHNN--PVPNYITILDYELFGIVKNPWEIWEEFAPSHSYCGKDL 68

Query: 93  YFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKGCED 152
           YFFT LKKKS+   R+ R + S  G W+ ED GK IV+ ++   +G KKRFR+ K     
Sbjct: 69  YFFTTLKKKSATSKRLIRTIGS--GTWEGEDTGKGIVAKETNKVLGIKKRFRFGKSNTFH 126

Query: 153 YGPWIMHECTLH---FPKNQATNYVLCRLRKNQPTGQDKEYSY 192
            G WI+HE  L         A NYVLCR RKN    Q +  S+
Sbjct: 127 DGAWILHEYNLDKSLINNTLANNYVLCRFRKNLKINQHQSNSH 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577787|ref|XP_002529768.1| conserved hypothetical protein [Ricinus communis] gi|223530766|gb|EEF32634.1| conserved hypothetical protein [Ricinus communis]

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 16/195 (8%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRD-CNLYETK-PSEIWDSHGGPFFN 87
           LP G +F P+DEEL+  YL KK   + +   E  I   C+LY  K P E+WD        
Sbjct: 8   LPTGCRFSPTDEELVAMYLFKKTKNLNLSDVENMIVPVCDLYGDKEPWELWDQFSQNQLF 67

Query: 88  IDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGK------DIVSGQSKVKIGSKK 141
            + DLYFFT+LKKK  K SRI R+V    G W  E+  +      D+ S +  +   +KK
Sbjct: 68  TNGDLYFFTELKKK-PKSSRISRRV--GKGTWHGENKREPVNVLLDVGSAKQLMIQATKK 124

Query: 142 RFRYEKKGCEDYGPWIMHECTLHFPKNQATNYVLCRLRKNQPTGQDKEYSYANKRKLSDF 201
           RF Y  +    +  WI+HE +L    N +TN+VLCRLR N  +  D   S     ++S  
Sbjct: 125 RFNYRNQNSAHHCRWILHEFSL---DNVSTNWVLCRLRNNHVS--DSVNSVLVLERVSSN 179

Query: 202 QHNSNQSEQVIDTDV 216
             N+   EQ  ++++
Sbjct: 180 GKNAEADEQCPNSEI 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.604	0.710	0.328	5.8e-18
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.479	0.471	0.371	1.6e-17
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.476	0.573	0.368	9.8e-16
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.570	0.630	0.306	2.3e-15
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.584	0.540	0.297	2.8e-15
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.5	0.392	0.372	3.4e-15
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.516	0.319	0.344	4.3e-15
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.493	0.5	0.376	9.2e-15
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.604	0.564	0.338	1.9e-14
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.503	0.408	0.347	2.7e-14

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 66/201 (32%), Positives = 100/201 (49%)

Query:    24 KNTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGG 83
             KN  L LP GF+F P+DEEL+  YLK+KV     PL    I + ++    P   WD  G 
Sbjct:     8 KNGVLRLPPGFRFHPTDEELVVQYLKRKVCSS--PLPASIIPEFDVCRADP---WDLPG- 61

Query:    84 PFFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRF 143
                N++++ YFF+  + K   G+R +R  ++ SG W+     K +V+ +    +G KK  
Sbjct:    62 ---NLEKERYFFSTREAKYPNGNRSNR--ATGSGYWKATGIDKRVVTSRGNQIVGLKKTL 116

Query:   144 RYEKKGCEDYGP---WIMHECTLHF--PKNQAT--NYVLCRLRKNQPTGQDKEYSYANKR 196
              + K G   +G    WIMHE  L    P +     N+VLCR+   +  G   +    + R
Sbjct:   117 VFYK-GKPPHGSRTDWIMHEYRLSSSPPSSMGPTQNWVLCRIFLKKRAGNKNDDDDGDSR 175

Query:   197 KLSDFQHNSNQSEQV--IDTD 215
              L    +N+N S+Q+  I TD
Sbjct:   176 NLRH-NNNNNSSDQIEIITTD 195

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 59/159 (37%), Positives = 85/159 (53%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFF-NI 88
             LP GF+F P+DEEL+ +YL +KV+G  I L    I + +LY+ +P   WD     F    
Sbjct:     6 LPPGFRFHPTDEELVAYYLDRKVNGQAIELE--IIPEVDLYKCEP---WDLPEKSFLPGN 60

Query:    89 DEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKK 148
             D + YF++   KK   GSR +R    ++ A  W+  GKD      K+K+G KK   Y + 
Sbjct:    61 DMEWYFYSTRDKKYPNGSRTNR----ATRAGYWKATGKDRTVESKKMKMGMKKTLVYYR- 115

Query:   149 GCEDYG---PWIMHECTL-HFPKNQAT-NYVLCRL-RKN 181
             G   +G    W+MHE  L H P +    +Y LCR+ +KN
Sbjct:   116 GRAPHGLRTNWVMHEYRLTHAPSSSLKESYALCRVFKKN 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 60/163 (36%), Positives = 86/163 (52%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFF-NI 88
             LP GF+F P+DEEL+ +YLK+K++G  I L    I + +LY+ +P   WD     F  + 
Sbjct:     6 LPPGFRFHPTDEELVNYYLKRKINGQEIELD--IIPEVDLYKCEP---WDLAEKSFLPSR 60

Query:    89 DEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDI-VSGQSKVKIGSKKRFRYEK 147
             D + YFF    +K   G R +R   ++ G + W+  GKD  V+ QS+  IG KK   Y K
Sbjct:    61 DPEWYFFGPRDRKYPNGFRTNR---ATRGGY-WKSTGKDRRVTSQSRA-IGMKKTLVYYK 115

Query:   148 KGCEDYG---PWIMHECTLHF-----PKNQATNYVLCRL-RKN 181
              G    G    W+MHE  L       P +   +Y LCR+ +KN
Sbjct:   116 -GRAPQGIRTDWVMHEYRLDDKDCDDPSSLQDSYALCRVFKKN 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 61/199 (30%), Positives = 103/199 (51%)

Query:    28 LFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFN 87
             L LP GF+F P+DEEL+  YL++KV+G+  PL    I + ++ ++ P   WD  G    +
Sbjct:    13 LRLPPGFRFHPTDEELVVQYLRRKVTGL--PLPASVIPETDVCKSDP---WDLPG----D 63

Query:    88 IDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEK 147
              + ++YFF+  + K   G+R +R    S+G+  W+  G D   G+ K+ +G KK   + K
Sbjct:    64 CESEMYFFSTREAKYPNGNRSNR----STGSGYWKATGLDKQIGKKKLVVGMKKTLVFYK 119

Query:   148 KGCEDYGP---WIMHECTLHFPKN-----QATNYVLCRLRKNQPTGQDKEYSYANKRKLS 199
              G    G    W++HE  L   +      Q  N+VLCR+         K+ S +N ++  
Sbjct:   120 -GKPPNGTRTNWVLHEYRLVDSQQDSLYGQNMNWVLCRVFL-------KKRSNSNSKRKE 171

Query:   200 DFQHNSNQSEQVIDTDVER 218
             D +    ++E+  +T+ ER
Sbjct:   172 D-EKEEVENEKETETERER 189

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 61/205 (29%), Positives = 100/205 (48%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
             LP GF+F P+DEEL+ HYLK+K   + +P+A   I D +LY+  P   W+      F  +
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVA--IIADVDLYKFDP---WELPAKASFG-E 70

Query:    90 EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVS--GQSKVKIGSKKRFRYEK 147
             ++ YFF+   +K   G+R +R  +++SG W+     K ++S  G    K+G KK   +  
Sbjct:    71 QEWYFFSPRDRKYPNGARPNR--AATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYS 128

Query:   148 ----KGCEDYGPWIMHE-----------CTLHFPKN--QATNYVLCRLRKNQPTGQDKEY 190
                 KG +    WIMHE           C     KN  +  ++VLCR+ K   +   + +
Sbjct:   129 GKPPKGVKS--DWIMHEYRLTDNKPTHICDFGNKKNSLRLDDWVLCRIYKKNNSTASRHH 186

Query:   191 SYANKRKLSDFQHNSNQSEQVIDTD 215
              + +   L +  H   + + +ID D
Sbjct:   187 HHLHHIHLDNDHH---RHDMMIDDD 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 63/169 (37%), Positives = 90/169 (53%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
             +P GF+F P+DEEL+ +YL+KKV+   I L    IRD +LY  +P   WD         +
Sbjct:    10 VPPGFRFHPTDEELVGYYLRKKVASQKIDLD--VIRDIDLYRIEP---WDLQESCRIGYE 64

Query:    90 E--DLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKD-IVSGQSKVKIGSKKRFRYE 146
             E  + YFF+   KK   G+R +R  ++ +G W+    G+D  V  +SK+ IG +K   + 
Sbjct:    65 ERNEWYFFSHKDKKYPTGTRTNR--ATMAGFWK--ATGRDKAVYDKSKL-IGMRKTLVFY 119

Query:   147 KKGCEDYGP---WIMHECTLHFPKN---QATNYVLCRLRKNQP-TGQDK 188
             K G    G    WIMHE  L   +N   Q   +V+CR  K +P TGQ K
Sbjct:   120 K-GRAPNGQKTDWIMHEYRLESDENAPPQEEGWVVCRAFKKKPMTGQAK 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 62/180 (34%), Positives = 96/180 (53%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFF-NI 88
             LP GF+F P+DEELI +YLK+K++G+ I L    I + +LY+ +P   WD  G     + 
Sbjct:     6 LPPGFRFHPTDEELITYYLKRKINGLEIELE--VIAEVDLYKCEP---WDLPGKSLLPSK 60

Query:    89 DEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDI-VSGQSKVKIGSKKRFRYEK 147
             D++ YFF+   +K   GSR +R   ++ G + W+  GKD  VS + +  IG+KK   Y +
Sbjct:    61 DQEWYFFSPRDRKYPNGSRTNR---ATKGGY-WKATGKDRRVSWRDRA-IGTKKTLVYYR 115

Query:   148 KGCEDYG---PWIMHECTLHFPKNQATNY------VLCRLRKN-----QPTGQDKEYSYA 193
              G   +G    W+MHE  L   + + + Y       LCR+ K      +P  Q + Y +A
Sbjct:   116 -GRAPHGIRTGWVMHEYRLDETECEPSAYGMQDAYALCRVFKKIVIEAKPRDQHRSYVHA 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.2e-15, P = 9.2e-15
 Identities = 61/162 (37%), Positives = 81/162 (50%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
             LP GF+F P+DEELIE+YLK+KV G+ I L    + D  LY   P E+ D    P  N D
Sbjct:     6 LPPGFRFHPTDEELIEYYLKRKVEGLEIELEVIPVID--LYSFDPWELPDKSFLP--NRD 61

Query:    90 EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG 149
              + YFF    KK   G R +R   + +G W+     + I S  S + IG +K   + K  
Sbjct:    62 MEWYFFCSRDKKYPNGFRTNR--GTKAGYWKATGKDRKITSRSSSI-IGYRKTLVFYKGR 118

Query:   150 CE--DYGPWIMHE---C---TLHFPKNQATNYVLCRLR-KNQ 182
                 D   WIMHE   C   T    +N    +VLCR+  KN+
Sbjct:   119 APLGDRSNWIMHEYRLCDDDTSQGSQNLKGAFVLCRVAMKNE 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 70/207 (33%), Positives = 103/207 (49%)

Query:    26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
             T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct:    10 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 64

Query:    86 FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKD-IVSGQSKVKIGSKKR-- 142
             F  +++ YFF+   +K   GSR +R     +G+  W+  G D I+S + + ++G KK   
Sbjct:    65 FG-EKEWYFFSPRDRKYPNGSRPNRV----AGSGYWKATGTDKIISTEGQ-RVGIKKALV 118

Query:   143 FRYEK--KGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQDKEYS--YA 193
             F   K  KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q + Y    A
Sbjct:   119 FYIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQKQVYDNGIA 176

Query:   194 NKRKLSDFQHNSNQSEQVIDTDVERVL 220
             N R   +F +N   S     +  E VL
Sbjct:   177 NAR---EFSNNGTSSTTSSSSHFEDVL 200

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 58/167 (34%), Positives = 88/167 (52%)

Query:    30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
             +P GF+F P+DEEL+ +YL+KK++   I L    IRD +LY  +P   WD         +
Sbjct:     9 VPPGFRFHPTDEELVGYYLRKKIASQKIDLD--VIRDIDLYRIEP---WDLQEQCRIGYE 63

Query:    90 E--DLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKD-IVSGQSKVKIGSKKRFRYE 146
             E  + YFF+   KK   G+R +R  ++ +G W+    G+D  V  ++K+ IG +K   + 
Sbjct:    64 EQNEWYFFSHKDKKYPTGTRTNR--ATMAGFWK--ATGRDKAVYDKTKL-IGMRKTLVFY 118

Query:   147 KKGCED--YGPWIMHECTLHFPKN---QATNYVLCRLRKNQPTGQDK 188
             K    +     WIMHE  L   +N   Q   +V+CR  K + TGQ K
Sbjct:   119 KGRAPNGKKSDWIMHEYRLESDENAPPQEEGWVVCRAFKKRATGQAK 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC142 NAC domain protein, IPR003441 (322 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	6e-26

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 99.2 bits (248), Expect = 6e-26
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+ +YLK+KV G  +PL +  I + ++Y+ +P   WD   G     D
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLD-VIPEVDIYKFEP---WDLPDGKAKGGD 56

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY---- 145
            + YFF+   +K   GSR +R     SG W+     K ++S   +V +G KK   +    
Sbjct: 57  REWYFFSPRDRKYPNGSRTNRAT--GSGYWKATGKDKPVLSKGGEV-VGMKKTLVFYKGR 113

Query: 146 EKKGCEDYGPWIMHE 160
             KG +    W+MHE
Sbjct: 114 APKGEKT--DWVMHE 126

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=7.6e-42  Score=284.79  Aligned_cols=127  Identities=37%  Similarity=0.616  Sum_probs=92.9

Q ss_pred             CCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCCCccc
Q 042765           30 LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKGSRID  109 (296)
Q Consensus        30 LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g~R~~  109 (296)
                      |||||||+|||+|||.+||++|+.|.+++.. .+|+++|||++|||+|+...    ..++++||||+++++++.++.|.+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~-~~i~~~Diy~~~P~~L~~~~----~~~~~~~yFF~~~~~~~~~~~r~~   75 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCE-DVIHDVDIYSAHPWELPAKF----KGGDEEWYFFSPRKKKYPNGGRPN   75 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS--CHSEE--GGGS-GGGCHHHS----SS-SSEEEEEEE----------S-
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcc-cceeecccCccChHHhhhhc----cCCCceEEEEEecccccCCccccc
Confidence            8999999999999999999999999998874 48999999999999999532    236779999999999999999999


Q ss_pred             eeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecC--CCCCCCCeEEEEEEeC
Q 042765          110 RKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKK--GCEDYGPWIMHECTLH  164 (296)
Q Consensus       110 R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g--~~~~kT~WvMhEY~l~  164 (296)
                      |++  ++|+||++|+.++|... ++.+||+|++|+||.+  +++.+|+|+||||+|.
T Consensus        76 R~~--~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   76 RVT--GGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEE--TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccc--cceEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            988  99999999999999986 6899999999999964  3567999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-12
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-12
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-12

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 67
Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F  +++ YFF+   +K   GSR +R     +G+  W+  G D +      ++G KK   +
Sbjct: 68  FG-EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKIISTEGQRVGIKKALVF 122
Query: 146 ----EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQ 186
                 KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q
Sbjct: 123 YIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct: 16  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 70
Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F  +++ YFF+   +K   GSR +R     +G+  W+  G D +      ++G KK   +
Sbjct: 71  FG-EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKIISTEGQRVGIKKALVF 125
Query: 146 ----EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQ 186
                 KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q
Sbjct: 126 YIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 173

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
            +L LP GF+F P+D+EL+EHYL +K +G  +P+    I + +LY+  P   WD      
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERAL 65
Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F   E  YFFT   +K   GSR +R  ++ +G W+   A K +      + I     F  
Sbjct: 66  FGARE-WYFFTPRDRKYPNGSRPNR--AAGNGYWKATGADKPVAPRGRTLGIKKALVFYA 122
Query: 146 EKKGCEDYGPWIMHECTLHFPKN----------QATNYVLCRL--RKNQ 182
            K        WIMHE  L               +  ++VLCRL  +KN+
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1ut7_A	171	No apical meristem protein; transcription regulati	5e-25
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-23

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 97.4 bits (243), Expect = 5e-25
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 21/166 (12%)

Query: 30  LPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNID 89
           LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       F  +
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKALFG-E 70

Query: 90  EDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEK-- 147
           ++ YFF+   +K   GSR +R   + SG   W+  G D +      ++G KK   +    
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNR--VAGSG--YWKATGTDKIISTEGQRVGIKKALVFYIGK 126

Query: 148 --KGCEDYGPWIMHECTLHFPKNQATN-----YVLCRLRKNQPTGQ 186
             KG +    WIMHE  L  P  +  +     +VLCR+ K Q + Q
Sbjct: 127 APKGTKT--NWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 93.2 bits (232), Expect = 2e-23
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 26/176 (14%)

Query: 25  NTDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGP 84
             +L LP GF+F P+D+EL+EHYL +K +G  +P+    I + +LY+  P   WD     
Sbjct: 10  EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERA 64

Query: 85  FFNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFR 144
            F    + YFFT   +K   GSR +R  ++ +G   W+  G D         +G KK   
Sbjct: 65  LFG-AREWYFFTPRDRKYPNGSRPNR--AAGNG--YWKATGADKPVAPRGRTLGIKKALV 119

Query: 145 YEK----KGCEDYGPWIMHECTLHFPKNQATN----------YVLCRLRKNQPTGQ 186
           +      +G +    WIMHE  L      A            +VLCRL   +   +
Sbjct: 120 FYAGKAPRGVKT--DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=8.3e-53  Score=367.71  Aligned_cols=148  Identities=32%  Similarity=0.597  Sum_probs=128.3

Q ss_pred             CCCCCCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCC
Q 042765           26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKG  105 (296)
Q Consensus        26 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g  105 (296)
                      .++.|||||||+|||||||.|||++|+.|.++|..  +|.++|||++|||+||+..    ..++++|||||++++||++|
T Consensus        11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~--~I~evDvy~~~Pw~Lp~~~----~~g~~ewYFFs~r~~ky~~g   84 (174)
T 3ulx_A           11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDPWDLPERA----LFGAREWYFFTPRDRKYPNG   84 (174)
T ss_dssp             STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSS--CCEECCGGGSCGGGSGGGC----SSCSSEEEEEEECCC-----
T ss_pred             cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcC--eeeecccccCCchhhhhhh----ccCCceEEEEeccccccCCC
Confidence            46799999999999999999999999999999875  9999999999999999864    34678999999999999999


Q ss_pred             CccceeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecCC--CCCCCCeEEEEEEeCCCCC----------CCCCe
Q 042765          106 SRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG--CEDYGPWIMHECTLHFPKN----------QATNY  173 (296)
Q Consensus       106 ~R~~R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g~--~~~kT~WvMhEY~l~~~~~----------~~~~~  173 (296)
                      .|.+|+|  ++||||++|++++|..  +|.+||+||+|+||.++  ++.||+|+||||+|..+..          ..++|
T Consensus        85 ~R~nR~t--~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w  160 (174)
T 3ulx_A           85 SRPNRAA--GNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW  160 (174)
T ss_dssp             CCSCEEE--TTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred             CCceeec--CCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence            9999999  9999999999999986  37999999999999865  4789999999999997621          35789


Q ss_pred             EEEEEEEcCC
Q 042765          174 VLCRLRKNQP  183 (296)
Q Consensus       174 VLCkI~~k~~  183 (296)
                      ||||||+|..
T Consensus       161 VlCrvf~K~~  170 (174)
T 3ulx_A          161 VLCRLYNKKN  170 (174)
T ss_dssp             EEEEEEESCC
T ss_pred             EEEEEEEcCC
Confidence            9999999863

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.8e-52  Score=364.80  Aligned_cols=149  Identities=34%  Similarity=0.571  Sum_probs=125.6

Q ss_pred             CCCCCCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCC
Q 042765           26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKG  105 (296)
Q Consensus        26 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g  105 (296)
                      ..+.|||||||+|||||||.|||++|+.|.+++..  +|+++|||++|||+||+..    ..++++|||||++++||++|
T Consensus        13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~--~I~e~Diy~~~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~g   86 (171)
T 1ut7_A           13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGEKEWYFFSPRDRKYPNG   86 (171)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHS----SSCSSEEEEEEECCC-----
T ss_pred             cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCC--eEeecccccCChhHhhchh----hcCCccEEEEeccccccCCC
Confidence            45789999999999999999999999999999864  9999999999999999874    35688999999999999999


Q ss_pred             CccceeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecCC--CCCCCCeEEEEEEeCCCC-----CCCCCeEEEEE
Q 042765          106 SRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG--CEDYGPWIMHECTLHFPK-----NQATNYVLCRL  178 (296)
Q Consensus       106 ~R~~R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g~--~~~kT~WvMhEY~l~~~~-----~~~~~~VLCkI  178 (296)
                      .|++|+|  ++||||++|++++|...  +.+||+||+|+||.++  ++.||+|+||||+|....     ...++||||||
T Consensus        87 ~R~~R~t--~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv  162 (171)
T 1ut7_A           87 SRPNRVA--GSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRI  162 (171)
T ss_dssp             --CCEEE--TTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEE
T ss_pred             CcccccC--CCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEE
Confidence            9999999  99999999999999974  6999999999999865  578999999999999762     24679999999


Q ss_pred             EEcCCC
Q 042765          179 RKNQPT  184 (296)
Q Consensus       179 ~~k~~~  184 (296)
                      |+|..+
T Consensus       163 ~~k~~~  168 (171)
T 1ut7_A          163 YKKQSS  168 (171)
T ss_dssp             EECC--
T ss_pred             EEcCCC
Confidence            999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-28

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 17/164 (10%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G     +   I + +LY+  P  +        
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAG--YDFSLQLIAEIDLYKFDPWVLP----NKA 66

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
              +++ YFF+   +K   GSR +R     SG W+     K I +     ++G KK   +
Sbjct: 67  LFGEKEWYFFSPRDRKYPNGSRPNRVA--GSGYWKATGTDKIISTE--GQRVGIKKALVF 122

Query: 146 E--KKGCEDYGPWIMHECTLHFP-----KNQATNYVLCRLRKNQ 182
              K        WIMHE  L  P       +  ++VLCR+ K Q
Sbjct: 123 YIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-50  Score=346.44  Aligned_cols=147  Identities=34%  Similarity=0.577  Sum_probs=123.8

Q ss_pred             CCCCCCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCC
Q 042765           26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKG  105 (296)
Q Consensus        26 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g  105 (296)
                      +++.|||||||+|||||||.+||++|+.|.+++..  +|+++|||+++||+||+.+    ..++++||||+++.+++++|
T Consensus        13 ~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~--~I~~~Dvy~~~Pw~Lp~~~----~~~~~~wyFft~~~~k~~~g   86 (166)
T d1ut7a_          13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGEKEWYFFSPRDRKYPNG   86 (166)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHS----SSCSSEEEEEEECCC-----
T ss_pred             ccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcc--cceeccCCcCChhhccchh----ccCcceEEEEeeeccccCCC
Confidence            57899999999999999999999999999999875  9999999999999999864    34678999999999999999


Q ss_pred             CccceeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecCC--CCCCCCeEEEEEEeCCC-----CCCCCCeEEEEE
Q 042765          106 SRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG--CEDYGPWIMHECTLHFP-----KNQATNYVLCRL  178 (296)
Q Consensus       106 ~R~~R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g~--~~~kT~WvMhEY~l~~~-----~~~~~~~VLCkI  178 (296)
                      .|.+|++  ++|+||++|+++.|.+  +|.+||+||+|+||.++  .+.+|+|+||||+|...     ....++||||||
T Consensus        87 ~r~~R~~--g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI  162 (166)
T d1ut7a_          87 SRPNRVA--GSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRI  162 (166)
T ss_dssp             --CCEEE--TTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEE
T ss_pred             Ccccccc--CCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEE
Confidence            9999999  8999999999998886  57999999999999765  56799999999999875     234568999999


Q ss_pred             EEcC
Q 042765          179 RKNQ  182 (296)
Q Consensus       179 ~~k~  182 (296)
                      |+|.
T Consensus       163 ~~Kk  166 (166)
T d1ut7a_         163 YKKQ  166 (166)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9983