Citrus Sinensis ID: 042769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV
Secondary Structure (PSIPRED)
ccEEEcccccEEEEEEccccccccccccccccccEEEEcccccEEEEEcccccccccccHHHHHcccccccccccEEEEEEEEEEEEEEcccccEEEEEccccccccccccccccccccccccccHHHHccccccccccccccccEEEEEEEEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcEEEEEEEEccHHHcccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEcccccEEEEEEEccEEEEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEEEcccEEEEEEEcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEccccHHHHHHcccccccccEEEEEEEcEEEEEEEcccccEEEEEccccccccccccccccccccHHccccHHHcccccccHHHHccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccccccccccccccHccccccccccccccccccccEEEEEEccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHcccccccEEEEEEEEEEEEEcccccccHHHccccccccccccccccHccccccccccccEccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEHcHHcHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEccccc
Coil and Loop (DISEMBL)
vswtfgtgtpiyssyqapvqatvdqdnaseltNSFFIDCGEDWGLYAHgllgrmklpqsiddyvktaphiteegavtlgskTTTVFVLEAKTGRlirtygsphssstlqneeqksasykhdkvnneqLVKSGLtntaelqhkepylLFITrtdytlqsfepnsdnvswsMTVAEIGYAFLCqdfenpfigatmntsyelgpeighdfdlpfacqskGIIQRFRkhnnsdssrrdnhgkpkmlpapapdpmafmqpkadklselhhndggegvltlppletrvsgivdaydvrtpYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAkgqfllsghpslsnsrtaASKRKKVCKLGKNGAVVEKKVENmssgnengfsiskdasdpfldlnklvrggaqgrnvgklfvsnteiakgsngtvvyegIYEGRPVAVKRLVRALHDVAFKEIQNliasdqhpnivrwygvendkdFVYLSLERCTcslddliqtysdsscnsvfgeDQATRAMIEYKLRLDSVKVIIRDLslwkadghpsplLLSLMRLV
Flexible Loop (DISEMBL)
vswtfgtgtpiyssyqapvQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITeegavtlgsktttVFVLEAKTGRLIrtygsphssstlqnEEQKSASYKHDKVNNEQLVKSgltntaelqhKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRkhnnsdssrrdnhgkpkMLPAPAPDPMAFMQPKADKLSELHHNDGGegvltlppletRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFllsghpslsnsrtaaskrkkvcklgkngavvekkvenmssgnENGFSISKDASDPFLDLNKLVRGGAQGRNVGKlfvsnteiakgsngtvvyEGIYEGRPVAVKRLVRALHDVAFKEIqnliasdqhpniVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDlslwkadghpsplllslmrlv
Low Complexity Region (SEG)
VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQstalsllllamtvvGFVVRNSLVAKGQFLLSGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV
Disordered region (IsUnstruct)
***TFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTY**************************************ELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRF************************************************GVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLS****************************************************FLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHP**LL*******
Disordered Region (DISOPRED)
VSWTFGTGTPIYS****************ELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGS**************ASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLC**********TMNTSYELGPEIGHDFDLPFACQ************************************************************************************LSMLFEQSTALSLLLLAMTVVGFVVRNS******************************************************************************VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRL*
Disordered Region (DISEMBL)
VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGS*****************KHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFR**************KPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSGHP**************VCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV
Disordered Region (DISPRO)
VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLS*************************************************************GGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLM***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	549	2.2.26 [Sep-21-2011]
P32361	1115	Serine/threonine-protein	yes	no	0.242	0.119	0.362	2e-18
O94537	1072	Serine/threonine-protein	yes	no	0.158	0.081	0.477	7e-17
Q55GJ2	984	Probable serine/threonine	yes	no	0.160	0.089	0.460	3e-15
Q9Z2E3	911	Serine/threonine-protein	yes	no	0.220	0.132	0.367	1e-14
Q9EQY0	977	Serine/threonine-protein	no	no	0.236	0.133	0.305	1e-13
O75460	977	Serine/threonine-protein	no	no	0.160	0.090	0.370	2e-13
Q76MJ5	926	Serine/threonine-protein	yes	no	0.160	0.095	0.404	2e-13
Q09499	967	Serine/threonine-protein	yes	no	0.216	0.123	0.362	2e-13
Q559A2	1431	Probable serine/threonine	no	no	0.189	0.072	0.381	7e-10
Q55DJ9	1505	Probable serine/threonine	no	no	0.142	0.051	0.432	9e-09

>sp|P32361|IRE1_YEAST Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRE1 PE=1 SV=2

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 16/149 (10%)

Query: 397 RGGAQGR------------NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH 444
           RGG +GR            ++  L VS   +  GS+GTVV++G ++GRPVAVKR++    
Sbjct: 650 RGGKKGRKSRIANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC 709

Query: 445 DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFG 504
           D+A  EI+ L  SD HPN++R+Y  E    F+Y++LE C  +L DL+++ + S  N    
Sbjct: 710 DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQ 769

Query: 505 ED----QATRAMIEYKLRLDSVKVIIRDL 529
           ++       R +      L S+K+I RDL
Sbjct: 770 KEYNPISLLRQIASGVAHLHSLKIIHRDL 798

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices HAC1 precursor mRNA to produce the mature form which then induces transcription of UPR target genes.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -

>sp|O94537|PPK4_SCHPO Serine/threonine-protein kinase ppk4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk4 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 57/88 (64%)

Query: 405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIV 464
           V  L V    I  GS+GT+VY G+YE R VAVKR++   +D+A +EI  L  SD HPNIV
Sbjct: 650 VNSLTVYPEVIGYGSHGTIVYRGVYEDREVAVKRVLMEFYDLASREITLLQQSDNHPNIV 709

Query: 465 RWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           R+Y  +    F+Y+ +E C C+L DLI+
Sbjct: 710 RYYCKQKSDQFLYIVIELCKCNLSDLIE 737

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q55GJ2|IREA_DICDI Probable serine/threonine-protein kinase ireA OS=Dictyostelium discoideum GN=ireA PE=3 SV=1

 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           +GKL  ++N  +  GS GT+VYEG  EGR VAVKR++      A +E+  LI SD+H N+
Sbjct: 570 IGKLEIITNKILGTGSCGTIVYEGKMEGRKVAVKRMLSQFVKFADREVSILIHSDEHTNV 629

Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           VR+Y  E D +F+YL++  C  SLD  +Q
Sbjct: 630 VRYYAKEEDDEFIYLAISFCQKSLDMYVQ 658

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus musculus GN=Ern2 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 7/128 (5%)

Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           VGK+ F     + +G+ GT V+ G +EGR VAVKRL+R    +  +E+Q L  SD+HPN+
Sbjct: 503 VGKISFNPKDVLGRGAGGTFVFRGQFEGRAVAVKRLLRECFGLVRREVQLLQESDRHPNV 562

Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQAT--RAMIEYKLRLDS 521
           +R++  E+   F Y++LE C  SL    Q Y +S     +G +  T  + M+     L S
Sbjct: 563 LRYFCTEHGPQFHYIALELCQASL----QEYVESPDLDRWGLEPTTVLQQMMSGLAHLHS 618

Query: 522 VKVIIRDL 529
           + ++ RDL
Sbjct: 619 LHIVHRDL 626

Role in expression of the DDIT3 transcription factor, required for the unfolded-protein response, growth arrest and apoptosis. Has no effect on 28S ribosomal RNA cleavage, unlike the corresponding human protein.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q9EQY0|ERN1_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Mus musculus GN=Ern1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           VGK+ F     +  G+ GT+VY+G+++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 566 VGKISFCPKDVLGHGAEGTIVYKGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 625

Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQT--YSDSSCNSVFGEDQATRAMIEYKLRLDS 521
           +R++  E D+ F Y+++E C  +L + ++   ++      +    Q T  +      L S
Sbjct: 626 IRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLHQTTSGLA----HLHS 681

Query: 522 VKVIIRDLSLWKADGHPSPLLLSL 545
           + ++ RDL        P  +LLS+
Sbjct: 682 LNIVHRDLK-------PHNILLSM 698

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices XBP1 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator and triggering growth arrest and apoptosis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|O75460|ERN1_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE1 OS=Homo sapiens GN=ERN1 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           VGK+ F     +  G+ GT+VY G+++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 566 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 625

Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           +R++  E D+ F Y+++E C  +L + ++
Sbjct: 626 IRYFCTEKDRQFQYIAIELCAATLQEYVE 654

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices XBP1 mRNA to generate a new C-terminus, converting it into a potent unfolded-protein response transcriptional activator and triggering growth arrest and apoptosis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q76MJ5|ERN2_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Homo sapiens GN=ERN2 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           VGK+ F     + +G+ GT V+ G +EGR VAVKRL+R    +  +E+Q L  SD+HPN+
Sbjct: 515 VGKISFNPKDVLGRGAGGTFVFRGQFEGRAVAVKRLLRECFGLVRREVQLLQESDRHPNV 574

Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           +R++  E    F Y++LE C  SL + ++
Sbjct: 575 LRYFCTERGPQFHYIALELCRASLQEYVE 603

Induces translational repression through 28S ribosomal RNA cleavage in response to ER stress. Pro-apoptotic. Appears to play no role in the unfolded-protein response, unlike closely related proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 8/127 (6%)

Query: 407 KLFVSNTEI-AKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVR 465
           KL  S ++I   G  GTVVY G ++GR VAVKR+V      A +E   L  SD HP+++R
Sbjct: 515 KLMYSPSDILGTGCEGTVVYRGTFDGREVAVKRVVSEFVKFAHREADLLRESDTHPHVIR 574

Query: 466 WYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGED---QATRAMIEYKLRLDSV 522
           ++ +E+D  F YL+LE C  SL+D ++        ++   D   QAT  +      L + 
Sbjct: 575 YFCMESDSQFRYLALELCIASLNDYVEQKEVQQNVTIALRDIMKQATDGLAH----LHAS 630

Query: 523 KVIIRDL 529
           K++ RD+
Sbjct: 631 KIVHRDM 637

Senses unfolded proteins in the lumen of the endoplasmic reticulum via its N-terminal domain which leads to enzyme auto-activation. The active endoribonuclease domain splices xbp-1 precursor mRNA to produce the mature form which then induces transcription of UPR target genes. Unfolded protein response (UPR) transcripional activation by ire-1, as well as translational attenuation by pek-1 in a complementary pathway, maintains ER homeostasis. Ire-1 and pek-1 are redundant genes that control a pathway essential for larval development and survival.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: -

>sp|Q559A2|IRLA_DICDI Probable serine/threonine-protein kinase irlA OS=Dictyostelium discoideum GN=irlA PE=3 SV=1

 Score = 66.2 bits (160), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 6/110 (5%)

Query: 390  LDLNKLVRGGAQGRNVGKLFVSNTE---IAKGSNGTVVYEGIYEGR-PVAVKRLVRALHD 445
            + LN+ +        +GK   S  E   I +GSNGT+V+ GI+  R PVAVK++ +A + 
Sbjct: 965  IQLNQTLTPIIPDFQIGKFKFSRDENNIIGRGSNGTLVFRGIWNDRIPVAVKQMQKAFNP 1024

Query: 446  VAFKEIQNLI--ASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQT 493
               KEI+ LI   S+   N++R+   E D+ FVYL L  C  SL DL+++
Sbjct: 1025 HISKEIEVLIRLTSNNCSNMIRYIDQEEDQLFVYLGLTLCEESLQDLMES 1074

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q55DJ9|IRLD_DICDI Probable serine/threonine-protein kinase irlD OS=Dictyostelium discoideum GN=irlD PE=3 SV=1

 Score = 62.4 bits (150), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 415  IAKGSNGTVVYEGIYEGR-PVAVKRLVRALHDVAFKEIQNLIA--SDQHPNIVRWYGVEN 471
            I +GSNGT+V++GI+  R PVA+K++ +A + +  KEI+ LI   +    NIVR+   E 
Sbjct: 1060 IGRGSNGTLVFKGIWNDRIPVAIKQMHKAFNPLISKEIEVLITLTNKNCNNIVRYIDQEE 1119

Query: 472  DKDFVYLSLERCTCSLDDLIQ 492
            D  FVYL L  C  SL +L++
Sbjct: 1120 DDMFVYLGLTLCNGSLQNLVE 1140

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
225438442	957	PREDICTED: uncharacterized protein LOC10	0.976	0.560	0.497	1e-141
224074275	822	predicted protein [Populus trichocarpa]	0.914	0.610	0.516	1e-134
255561453	911	kinase, putative [Ricinus communis] gi|2	0.927	0.558	0.464	1e-127
449448588	942	PREDICTED: serine/threonine-protein kina	0.965	0.562	0.437	1e-110
449434428	898	PREDICTED: uncharacterized protein LOC10	0.934	0.571	0.425	1e-101
356561003	878	PREDICTED: serine/threonine-protein kina	0.930	0.582	0.398	7e-94
356529659	824	PREDICTED: serine/threonine-protein kina	0.932	0.621	0.396	1e-93
255539280	720	conserved hypothetical protein [Ricinus	0.928	0.708	0.387	3e-92
357484205	904	Serine/threonine protein kinase/endoribo	0.908	0.551	0.393	7e-90
225457602	925	PREDICTED: uncharacterized protein LOC10	0.939	0.557	0.377	5e-87

>gi|225438442|ref|XP_002275036.1| PREDICTED: uncharacterized protein LOC100249111 [Vitis vinifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 286/575 (49%), Positives = 374/575 (65%), Gaps = 39/575 (6%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQS 59
           V W+F +G  IYSSYQAP+    DQDNA++  + FF+DCGEDW LY HG   G++KLP +
Sbjct: 111 VLWSFTSGPSIYSSYQAPL----DQDNATDWGSGFFVDCGEDWELYMHGRHFGKVKLPMT 166

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST-LQNEEQKSASY 118
            ++++ + PH++E+G V LGSK TTVF+L AKTG+LI +Y S  S  T L N+E+   S 
Sbjct: 167 AEEFISSTPHVSEDGGVILGSKQTTVFLLNAKTGKLIHSYRSLESPPTPLSNKEE---SV 223

Query: 119 KHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYA 178
            HDK + E+ V SG TN   L   EP L +ITRTDY+LQSF   SD V W+MTVAEIG A
Sbjct: 224 VHDK-DIEEWVDSGSTN---LNIVEPRL-YITRTDYSLQSFAQGSDKVLWNMTVAEIGAA 278

Query: 179 FLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRR----- 233
           FLCQ  EN F    +N   ELGPE   DF++P  CQSK ++ R+R H   +   R     
Sbjct: 279 FLCQGTENLFSRPPLNLGCELGPEYNCDFEMPLPCQSKAVVYRYRGHTMLEPFPRHDRLQ 338

Query: 234 ------------------DNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTL 275
                             D H +  MLPA  P+ M   +PK +       N+  E VL L
Sbjct: 339 EAHQEDRLLLQPNIDKTLDFHPQDMMLPAVVPNHMLPSEPKDEISLNFQDNNDSEAVLPL 398

Query: 276 PPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLL-LAMTVVGFVVRNSLVAKGQFL 334
            P + + SGI D  +V+ PY + LSM    S   SL++ + + +V  +   + VA  Q  
Sbjct: 399 SPPKIKNSGISDQ-NVQMPYNDGLSMFSGGSILFSLIVFIVILLVSVIYCCTPVAGEQGE 457

Query: 335 LSGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNK 394
           ++  P+ S+S +  SK++K+ K  KN     KK E++ S N++G +     + P+L+LN 
Sbjct: 458 MNKQPNDSDSNSVPSKKRKIRKSAKNNISSGKKDEHVLSENKDGSAHIASDNSPWLNLNG 517

Query: 395 LVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNL 454
           LV G   GR VGKLFVSN  IAKGSNGT+V EGI+EGR VAVKRLVRA HDVAFKEIQNL
Sbjct: 518 LVDGDTNGRIVGKLFVSNIVIAKGSNGTIVLEGIHEGRSVAVKRLVRAHHDVAFKEIQNL 577

Query: 455 IASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIE 514
           IASD+HPNIVRWYGVE D+DFVYLSLERCTCSL+DL+Q +S+SS N  F  DQAT+AM+E
Sbjct: 578 IASDRHPNIVRWYGVEYDQDFVYLSLERCTCSLNDLLQIHSNSSQNPGFSMDQATKAMME 637

Query: 515 YKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV 549
           Y+++LDSVK I++D+ LWK++G+PS +LLSLMR V
Sbjct: 638 YRIQLDSVKCIVQDIKLWKSNGYPSSVLLSLMRDV 672

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074275|ref|XP_002304333.1| predicted protein [Populus trichocarpa] gi|222841765|gb|EEE79312.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 289/560 (51%), Positives = 369/560 (65%), Gaps = 58/560 (10%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAH-GLLGRMKLPQS 59
           + W+F +G P YSSYQAP +   D++        FF+D G+DW LYAH    G MKLP +
Sbjct: 19  ILWSFSSGGPTYSSYQAPAKHDSDKEKGPGGLTGFFLDYGDDWQLYAHYKYSGGMKLPMN 78

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYK 119
           I+D++K  PH++E+GAV LGSK TTVFV+EAKTGRLIRT+ SP S S+LQ+ E+ S    
Sbjct: 79  IEDFIKITPHMSEDGAVMLGSKKTTVFVVEAKTGRLIRTFKSPDSPSSLQSFEEGSG--L 136

Query: 120 HDKVNNEQ-LVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYA 178
           HD +NN + L+KSG +NTA++       ++I RTDY LQ+F PNSD VSWS  VA IG  
Sbjct: 137 HDDLNNNKDLLKSGSSNTAQV-------IYILRTDYALQTFGPNSDKVSWSTKVATIGAT 189

Query: 179 FLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGK 238
           FLC+D ENP      N S+EL      D D P +CQS+ I+   ++ + S  S  D HG+
Sbjct: 190 FLCKDVENP--SEVFNLSFEL------DSDTPLSCQSRRIV--VQRQDKSQYSSGDIHGE 239

Query: 239 PKMLPAPAPDPMAFMQPKADKLSELHH--------NDGGEGVLTLPPLETRVSGIVDAYD 290
            K LP  AP+ M   QP  +K  + HH        ++ G+ +L LP      +G V    
Sbjct: 240 DK-LPLSAPNLMLTTQPGVEKSLDDHHARMLLAAPSEHGKEMLALP--SASAAGEVH--- 293

Query: 291 VRTPYKNVLSMLFEQSTALSLLL-LAMTVVGFVVRNSLVAKGQFLLSGHPSLSNSRTAAS 349
               Y+    ML   ST  S +L + + ++ FV+    ++K  F L G  + +  + ++S
Sbjct: 294 ----YR--FGMLLMWSTTQSFILFVGILLLCFVL---YLSKESFTLEGQLTGTGLKASSS 344

Query: 350 KRKKVCKLGKNGAVVEKKVENMSSGNE--NGFSISKDASDPFLDLNKLVRGGAQGRNVGK 407
           K+KK  K GKN   VE       +GNE   G  ++K  SD    LNKLV GGA GR +GK
Sbjct: 345 KKKKAKKPGKNNVSVE-------NGNEIAPGEGVNKTLSD----LNKLVDGGANGRRIGK 393

Query: 408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
           LFVSNTEIAKGSNGTVV EG+YEGR VAVKRLV+  HDVA+KEIQNLIASD+HPNIVRWY
Sbjct: 394 LFVSNTEIAKGSNGTVVLEGVYEGRLVAVKRLVQTHHDVAWKEIQNLIASDRHPNIVRWY 453

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIR 527
           GVE D+DFVYLSLERCTCSLDDLIQ YSDSS N V+G+D+ +RA IE+KLRLDSVK +++
Sbjct: 454 GVEYDEDFVYLSLERCTCSLDDLIQIYSDSSLNPVYGKDRTSRAAIEHKLRLDSVKGVMQ 513

Query: 528 DLSLWKADGHPSPLLLSLMR 547
           DL+LWKA GHPSPLLL+LMR
Sbjct: 514 DLNLWKATGHPSPLLLTLMR 533

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561453|ref|XP_002521737.1| kinase, putative [Ricinus communis] gi|223539128|gb|EEF40724.1| kinase, putative [Ricinus communis]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 270/581 (46%), Positives = 355/581 (61%), Gaps = 72/581 (12%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGR-MKLPQS 59
           V W+F +G PIYSSYQA      D +N    +  FFID G+DW LYAHG     MKL  +
Sbjct: 84  VFWSFSSGAPIYSSYQASFNQDNDGENEFGPSTGFFIDYGDDWQLYAHGKHSSGMKLSMN 143

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYK 119
           I+D++   PH++E+GAV LGSK TTVFV+EAKTGRL++TY S    S+LQ +E+ +A + 
Sbjct: 144 IEDFMIITPHVSEDGAVILGSKITTVFVVEAKTGRLVQTYKSLDPPSSLQRDEEGNA-FL 202

Query: 120 HDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAF 179
           ++  NN+ ++    T+          L++ITRTDYTLQ+F PNSD +SW+M VA I  AF
Sbjct: 203 NENRNNDLIISDSATSAQ--------LIYITRTDYTLQNFGPNSDKISWNMKVAMIEAAF 254

Query: 180 LCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKP 239
           LC+D E                    +FD+P +CQS+ ++   R+  N  SS    HG  
Sbjct: 255 LCKDVEGR-----------------SNFDMPLSCQSRRMV--VRRQGNPQSSSEATHGD- 294

Query: 240 KMLPAPAPDPMAFMQP----------------------------KADKLSELHHNDGGEG 271
           +MLP PA D +   QP                            K D+L   H  D  EG
Sbjct: 295 EMLPVPALDLVLPSQPRVGKSLQDHHEGRMLSGSASDFVLPLQSKVDELPTFHPTDDSEG 354

Query: 272 VLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLL-LAMTVVGF-VVRNSLVA 329
           +L LP      S   DA++ R  + + L++L ++ST LS +  + + ++GF    ++LV 
Sbjct: 355 MLALP----NDSEGFDAHNARVAFDDWLNILIKRSTTLSFMFFIVIILLGFNFYPSNLVG 410

Query: 330 KGQFLLSG-HPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDP 388
           K +    G     S+  +++ ++K      KNG       +++   N++G ++S  +   
Sbjct: 411 KSKVASEGLSSDSSSKASSSKRKKSRKSGKKNG-------KDVPFENDDGPTLSDSSDKK 463

Query: 389 FLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF 448
            LDLNK V  G  GR +GKLFVSN EIAKGSNGT+V EGIYEGRPVAVKRLV+A H+VAF
Sbjct: 464 LLDLNKHVDRGVNGRRIGKLFVSNAEIAKGSNGTIVLEGIYEGRPVAVKRLVQAHHEVAF 523

Query: 449 KEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA 508
           KEIQNLIASD+HPNIVRWYGVEND DFVYLSLERCTCSLDDLIQ Y DSS N VF EDQA
Sbjct: 524 KEIQNLIASDRHPNIVRWYGVENDNDFVYLSLERCTCSLDDLIQIYCDSSFNQVFSEDQA 583

Query: 509 TRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV 549
           TR    YKLRL+ VK I++DL+LWK++GHPSPL+L LMR V
Sbjct: 584 TRVATNYKLRLNKVKGILQDLNLWKSNGHPSPLMLLLMRDV 624

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448588|ref|XP_004142048.1| PREDICTED: serine/threonine-protein kinase/endoribonuclease ire-1-like [Cucumis sativus] gi|449497731|ref|XP_004160500.1| PREDICTED: serine/threonine-protein kinase/endoribonuclease ire-1-like [Cucumis sativus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 256/585 (43%), Positives = 348/585 (59%), Gaps = 55/585 (9%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNS-FFIDCGEDWGLYAHGLLGRMKLPQS 59
           + W+F +GTPIYS+YQ+P     +++NAS  T S FF DCG+DW LY H   GR KLP++
Sbjct: 86  IIWSFASGTPIYSAYQSP--TNYNKENASGSTRSPFFFDCGDDWELYIHTEHGRTKLPRT 143

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQK--SAS 117
           ID+ V++ P+I E+G+V  GS+ TTV+ +   TG+LIR + S  S S L N+E    + +
Sbjct: 144 IDEVVRSTPYIFEDGSVMTGSRKTTVYEVNPVTGKLIRNHSSELSPSGLSNDEFSVLNGN 203

Query: 118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY 177
              +K+ N  L++ GL    E +      L+ITRTDY L+S    S+ VSWS+ VA+IG 
Sbjct: 204 SSTNKLENRDLIQPGLMKPIEQR------LYITRTDYFLKSSFAGSEEVSWSLNVADIGA 257

Query: 178 AFLCQDFENPF----IGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSRR 233
             +C D ENP     + +  N S+E       DF LP +CQS+ ++ R R H  ++SS  
Sbjct: 258 TLVCPDGENPTNSVPLDSQNNGSFEF------DFTLPLSCQSEVLVYRERSHVLTESSGH 311

Query: 234 ----DNHGKPKMLPAPAPDPMAFMQPKADKLSELHH------------------------ 265
               D+H    MLPA A   M   QP   K S +H                         
Sbjct: 312 KMLSDSHNTDIMLPASASSLMLPSQPSV-KHSNIHPERLMLPGPAANIASLLEPNAISQL 370

Query: 266 NDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRN 325
           ND  + ++ +P ++   S  V  +++ T   + ++M+      L + L     +G + R 
Sbjct: 371 NDDSQALIPMPLMKINDSSAVLGHNIGTTNVDFIAMVLNGPLGLFIALFITMFLGLINRG 430

Query: 326 -SLVAK-GQFLL-SGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSIS 382
            +LVAK  QFLL    PS  +S+  +SK+KK  KLGKNG   +KK  + SS NE+     
Sbjct: 431 GALVAKLKQFLLKEKQPSAVSSKIVSSKKKKARKLGKNGNF-DKKDASASSENEDMVRSE 489

Query: 383 KDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA 442
            D ++ F   N L+     GR +GKL V+N EIAKGSNGT+V EG+YEGR VAVKRLV+ 
Sbjct: 490 GDFNNWFPP-NNLIDTSGNGRQIGKLMVTNKEIAKGSNGTIVLEGVYEGRLVAVKRLVKT 548

Query: 443 LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSV 502
            HDVAFKE+QNLIASD+H NIVRWYGVE D+DFVYLSLERCTCSLDDLIQ  SD S NS+
Sbjct: 549 HHDVAFKEVQNLIASDRHQNIVRWYGVEYDQDFVYLSLERCTCSLDDLIQICSDPSLNSL 608

Query: 503 FGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMR 547
              D+    MI+YKLRL+S+K +I DL+LWK +  P+PLLL L+R
Sbjct: 609 LSLDEDAGPMIDYKLRLESLKNVISDLNLWKKNSRPAPLLLGLLR 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434428|ref|XP_004134998.1| PREDICTED: uncharacterized protein LOC101215649 [Cucumis sativus]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 241/567 (42%), Positives = 324/567 (57%), Gaps = 54/567 (9%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKLPQSI 60
           + W+F +G PIYSSYQA +    +Q+NAS + +SFF DCG+DW LY H   G+MKLP +I
Sbjct: 79  IIWSFSSGPPIYSSYQANINHEPNQENASGVGSSFFFDCGDDWELYIHTEHGKMKLPSTI 138

Query: 61  DDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKH 120
           D+ V+  P+I E+GAV  GS+ T VF ++  TG LIR + S   SS L NEEQ S   KH
Sbjct: 139 DEVVRNTPYIFEDGAVMTGSRKTAVFEVDLVTGELIRNHMSKFLSSGLSNEEQVSYKSKH 198

Query: 121 DKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFL 180
           + ++ + L++S   N+ E +      L+ITRTDY+L+S   NS+  SWS+ VAEIG   L
Sbjct: 199 N-MDIKDLMQS--MNSVEPR------LYITRTDYSLKSSFSNSEEASWSLNVAEIGATLL 249

Query: 181 CQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSS-----RRDN 235
           C D ENP  G     + +     G D+ +P +CQSK ++ R R H  S  S       + 
Sbjct: 250 CPDVENPIEGIPW--TLQNNNSFGIDYGVPLSCQSKALVFRDRSHFLSGPSGYKILSSEA 307

Query: 236 HGKPKMLPAPAPDPMAF---MQPKADKLSELHH---NDGGEGVLTLPPLETRVSGIVDAY 289
           H    M  +  P  +     +  K+ K   + H   N+    V  LP ++   S I+   
Sbjct: 308 HDSDNMSGSFLPSQLKIGKHINAKSGKF--MFHGLVNNTSYAVDPLPSMKINESNIIQ-- 363

Query: 290 DVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAK-GQFLLSGHPSL--SNSRT 346
                 K  + +L E      + LL M V       +L  K  QFLL    SL  SNSR 
Sbjct: 364 ------KQKMGILPEAFGLFFVFLLTMLVGLMRYGRTLTEKVKQFLLKEKLSLGTSNSRD 417

Query: 347 AASKRKKVCKL----GKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGG--A 400
            +SK+ K  KL    GK    +  ++E+M    EN             +LN    G    
Sbjct: 418 NSSKKNKPRKLKKSSGKREVSISSEIEDMLLQREN-------------NLNSGFHGNNLI 464

Query: 401 QGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQH 460
            GR++GKL+++N +IA GSNGTV+ EGIYEGRPVAVKRLV+  HDVA KE+QNLI SD+H
Sbjct: 465 SGRHIGKLWITNKKIATGSNGTVILEGIYEGRPVAVKRLVKTHHDVASKEVQNLIVSDRH 524

Query: 461 PNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD 520
           PNIVRWYG+E+D+DFVYLSLERCTC+L DLIQ YSD   N V G D+ +  M  Y + L+
Sbjct: 525 PNIVRWYGMESDQDFVYLSLERCTCNLYDLIQIYSDLPKNFVLGLDRDSGHMDGYNIHLE 584

Query: 521 SVKVIIRDLSLWKADGHPSPLLLSLMR 547
           S+KV + +L LW  +G PS +LL LMR
Sbjct: 585 SIKVALPNLKLWNENGRPSSILLKLMR 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561003|ref|XP_003548775.1| PREDICTED: serine/threonine-protein kinase/endoribonuclease ire-1-like [Glycine max]

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 320/560 (57%), Gaps = 49/560 (8%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGE--DWGLYAHGL-LGRMKLP 57
           V W+F TG+PIY S++AP +    ++NAS    S F++CGE  DW LY H    G+M++ 
Sbjct: 67  VIWSFSTGSPIYQSHRAPTKKDNGKENASAALTSGFMECGEGNDWSLYMHDKHFGKMRIS 126

Query: 58  QSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSAS 117
           +SI +YV   P  +++GAVTLGSK +T+F ++AKTG +I+     H+ S + N     + 
Sbjct: 127 ESIAEYVARTPTFSDDGAVTLGSKRSTLFEVDAKTGSIIKI----HAMSDIDNASAPWSD 182

Query: 118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY 177
                 N   +    L +  +L   +P LL I RTDY+L+S  P+S  V W+M VAE+  
Sbjct: 183 GNQGVTNILNVNDKDLADPMKLNSPQP-LLKIFRTDYSLKSVGPSSGIVLWTMAVAELEA 241

Query: 178 AFLCQDFENPFIGATMNTSYELGPEIGHD----FDLPFACQSKGIIQRFRKHNNSDSSRR 233
             LCQ           +TS++L  E   D    F +P+ CQ    + R +K+   + S  
Sbjct: 242 VLLCQ-----------HTSFDLEDEYASDSSLNFRMPYPCQEINQVIRLKKNFQFEPSLT 290

Query: 234 D----NHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLP--PLETRVSGIVD 287
           +    ++ +  ML  P  + +   QP  D+L   H ++     + LP  PL         
Sbjct: 291 ERLLVDYHENDMLSIPNSNLILPSQPNIDRLFNGHDDN-----IMLPQQPL--------- 336

Query: 288 AYDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSGHPSLSNSRTA 347
             ++ TP +  L+   E  T L L+L  + +V F V   LV K Q ++    S S  +++
Sbjct: 337 -VEITTPGEVYLNRTSEWPTPLPLILFTVFLVAFSVIYPLVIKNQDVMKDQNSESELKSS 395

Query: 348 ASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGK 407
            +K+KK  K GK    ++K+ +++S  N++  +   +  + +   N+ V     GR +GK
Sbjct: 396 PAKKKKTRKSGKKNDTIDKREKHLSPENKDVLTQKGNYREVWQHFNQ-VDESVDGRRIGK 454

Query: 408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
           LFVSN  IAKGSNGT+V EGIYEGR VAVKRLV+A HDVA+KEIQNLI SDQHPNIVRW+
Sbjct: 455 LFVSNKVIAKGSNGTIVLEGIYEGRAVAVKRLVKAHHDVAYKEIQNLIVSDQHPNIVRWH 514

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIR 527
           GVE D DFVYL+LERCTC+LDDLIQ YSD S NSV  +DQ  R +I+ ++ ++       
Sbjct: 515 GVEYDSDFVYLALERCTCNLDDLIQIYSDISENSVLMKDQGFRCLIKSQMEMEKYNT--- 571

Query: 528 DLSLWKADGHPSPLLLSLMR 547
              LWK + +PSPLLL LMR
Sbjct: 572 -QCLWKENRYPSPLLLKLMR 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529659|ref|XP_003533406.1| PREDICTED: serine/threonine-protein kinase ppk4-like [Glycine max]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 221/558 (39%), Positives = 313/558 (56%), Gaps = 46/558 (8%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGE--DWGLYAHGL-LGRMKLP 57
           V W+F TG PIY SYQAP +    ++NAS    S F++CGE  DW LY H    G+M++ 
Sbjct: 14  VIWSFSTGLPIYQSYQAPTKKDNGKENASAALMSGFMECGEGNDWSLYMHDKHFGKMRIS 73

Query: 58  QSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSAS 117
           +SI +YV   P  +++GAVTLGSK +T+F ++AK+G +I+     H+ S   N     + 
Sbjct: 74  ESIAEYVARTPTFSDDGAVTLGSKRSTLFEVDAKSGSIIKI----HAMSDFDNASAPCSD 129

Query: 118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY 177
            K    N   +    L +  +L   +P LL I RTDY+L+S  P+S  V W+M VAE   
Sbjct: 130 GKQGVTNILNVKNKDLADPMKLNSPQP-LLKIFRTDYSLKSVGPSSGMVLWTMAVAEFEA 188

Query: 178 AFLCQDFENPFIGATMNTSYELGPEIGHD----FDLPFACQSKGIIQRFRKHNNSDSSRR 233
             LCQ           +TS++L  E   D    F +P+ CQ    + R +K+   + S  
Sbjct: 189 VLLCQ-----------HTSFDLEDEYASDSSLNFRMPYPCQEINQVFRLKKNFRFEPSLT 237

Query: 234 D----NHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAY 289
           +    ++ +  ML  P    M   QP  D+L   H ++    +L  PP+E          
Sbjct: 238 ERLLVDYHENDMLSMPNSKLMLPSQPNIDRLFNGHDDNM---MLPQPPVE---------- 284

Query: 290 DVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSGHPSLSNSRTAAS 349
            + TP +  L+   E  T L L+L  + ++ F +   LV + Q +L    S S  + + +
Sbjct: 285 -ITTPGEVYLNRTSEWPTPLPLILFTVFLLAFSLIYPLVIENQDILKDQDSESELKGSPA 343

Query: 350 KRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKLF 409
           K+KK  K GK    ++ + +++S  NE+  +   +  + +   N+       GR +GKLF
Sbjct: 344 KKKKTRKSGKKNGTIDTREKHLSPENEDVLTQKDNEREVWKHFNQ-GDESVDGRRIGKLF 402

Query: 410 VSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGV 469
           VSN EIAKGSNGT+V EGIYE R VAVKRLV++ HDVA+KEIQNLI SD HPNIVRW+GV
Sbjct: 403 VSNKEIAKGSNGTIVLEGIYECRVVAVKRLVKSHHDVAYKEIQNLIVSDHHPNIVRWHGV 462

Query: 470 ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL 529
           E D DFVYL+LERCTC+LDDLIQ YSD S N  F +DQ  R +I+ ++ ++         
Sbjct: 463 EYDSDFVYLALERCTCNLDDLIQIYSDMSENFAFRKDQGFRCLIKSQMEMEKYNT----Q 518

Query: 530 SLWKADGHPSPLLLSLMR 547
            LWK +G+PSPLLL LMR
Sbjct: 519 CLWKENGYPSPLLLKLMR 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539280|ref|XP_002510705.1| conserved hypothetical protein [Ricinus communis] gi|223551406|gb|EEF52892.1| conserved hypothetical protein [Ricinus communis]

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 315/588 (53%), Gaps = 78/588 (13%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNA-SELTNS-FFIDCGEDWGLYAHG-LLGRM-KL 56
           V W+F +G+PIYSSYQA      D+ N+ SEL+N  ++IDCG+DW LY H    G++ KL
Sbjct: 75  VRWSFSSGSPIYSSYQANPNDDEDRHNSGSELSNDLYYIDCGDDWELYVHSKRFGKLQKL 134

Query: 57  PQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL--QNEEQK 114
             S ++YVK  PHI+E+G +TLG K TT F+++AKTGR++RTYG  +S+ST   Q +E+ 
Sbjct: 135 ALSPEEYVKMTPHISEDGEITLGFKRTTAFLVDAKTGRVVRTYGFDNSTSTFGAQYDERN 194

Query: 115 SASYKHDKVNNEQLVKSG--LTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV 172
           +       V + +L+KS   + +   +QH    L++ITRTDY LQ + PNS ++ W++  
Sbjct: 195 ALLL----VKDAELIKSAAAVADLGTVQH----LVYITRTDYVLQHYSPNSTDILWNVAF 246

Query: 173 AEIGYAFLCQDFENPFIGATMNTSYELGPEIGHDFD-LPFACQSKGIIQRFRKHNNSDSS 231
           A+I   F CQ   +   G +        P    D D + F CQ +  + R R H+  +  
Sbjct: 247 ADIEAEFRCQGLRSSLSGVS--------PSASDDVDEIEFPCQMRTPVLRVRDHSFLEFD 298

Query: 232 RRD-NHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLPPLETRVSGIVDAYD 290
           +    H        PAPD +  + P                 L LP  E RV   + A +
Sbjct: 299 KLAIAHLGAGARFLPAPDHILPLGPVQ------------RYPLALPTHEDRVVLALPASE 346

Query: 291 VRTPYK-------------NVLSMLFEQSTALSLLLLAMTVVGFVVRNSLVAKGQFLLSG 337
              P               N+ S +   S    ++   +++VG +  N L  + +  L+ 
Sbjct: 347 AANPRNLGLPSGIAGINGTNLSSEIITNSHMWPIIAAILSIVGSICYNYLTFRKKNELNK 406

Query: 338 HPSLSNSRTAASKRKKVCKLG-KNGAVVEKK-----VENMSSGNENGFSISKDASDPFLD 391
                  +    K+KK  + G K     E++     +EN + G++ G S  ++     L 
Sbjct: 407 PVEELKQQAGVPKKKKSKRSGNKQSPTRERRQRYLPLEN-NVGDDVGVSHVEENERKLLT 465

Query: 392 LNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEI 451
              +V G   GR +GKL VSN EIAKGSNGTVV EGIY+GR VAVKRLV+  HDVA KEI
Sbjct: 466 FANVVDGRIDGRKIGKLIVSNKEIAKGSNGTVVLEGIYDGRSVAVKRLVQTHHDVALKEI 525

Query: 452 QNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGED----- 506
           QNLIASDQHPNIVRWYGVE D+DFVYL+LERCTCSL+D I  YS S  N V  +D     
Sbjct: 526 QNLIASDQHPNIVRWYGVEYDQDFVYLALERCTCSLNDFIYVYSQSFQNQVLSKDVDSNC 585

Query: 507 -----QATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV 549
                  +R M+EY           R++ LWK +GHPS  LL LMR V
Sbjct: 586 LPVCTVQSRTMLEYN----------RNIELWKTNGHPSLRLLKLMRDV 623

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484205|ref|XP_003612390.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula] gi|355513725|gb|AES95348.1| Serine/threonine protein kinase/endoribonuclease IRE1 [Medicago truncatula]

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 230/584 (39%), Positives = 327/584 (55%), Gaps = 85/584 (14%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHG-LLGRMKLPQS 59
           V W+F +G+PIY S            +A+   +S  I+CG+DW L  H    G+ +L +S
Sbjct: 85  VIWSFSSGSPIYHS------------SANTPPSSGLIECGDDWELIFHDPHFGKTRLKES 132

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPH----SSSTLQNEEQKS 115
           + DYV   P ++++GAV LGSK +TVF ++AKTG+L+R+YG+      S++ + + ++ S
Sbjct: 133 VADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSYGAADFRNVSTTAMWSGDKDS 192

Query: 116 ASYKHD-KVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE 174
               +D + NN++L      N  E      +LL I RTDY LQS  P S  V W+M+VAE
Sbjct: 193 EGVTNDLRANNKELADPAKLNLPE------FLLQIVRTDYFLQSVGPGSGIVLWTMSVAE 246

Query: 175 IGYAFLCQDFENPFIGATMNTSYELGPEI--GHDFDLPFACQSKGIIQRFRKHNN----S 228
                 CQ  ENP + A+++   E   ++  G DF +P+AC  + + + +R+  N     
Sbjct: 247 FEAVLFCQHNENPTLTASLDAEGEYAYDVDSGLDFAMPYACPDRKLREVYRQRKNFLFEP 306

Query: 229 DSSRR----DNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEGVLTLP-PLETRVS 283
           D  +R    D + +  MLP P    M   QPK+D+    H   GG  +L +P P   +  
Sbjct: 307 DKIQRLSDVDAYQEKGMLPMPDLKLMLPSQPKSDRFLPGH---GGNMMLPVPVPNYMQPK 363

Query: 284 GIVDA-----------YDVRTPYKNVLSMLFEQSTALSLLLLAMTVVGFV---VRNSLVA 329
              D+            ++  P +  LS + E S +L ++L  + ++      ++N++ +
Sbjct: 364 ITYDSNGNAVMLPQPPMEITAPREVDLSRVIELSMSLLVVLSVVFLLMLYQNRLKNNVTS 423

Query: 330 KGQFLLSGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPF 389
           K Q       S S+ +++ SK+K+V K GKN  +VE+ +            I K+A +  
Sbjct: 424 KVQI------SDSDLKSSPSKKKRVRKSGKNNIIVEENIR-----------IHKEAENE- 465

Query: 390 LDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFK 449
               +L      GR +GKL V N EIAKGSNGT+V EGIYEGR VAVKRLV+A HDVA K
Sbjct: 466 ---ARLYYNNVNGRRIGKLCVLNKEIAKGSNGTIVLEGIYEGRTVAVKRLVQAHHDVAHK 522

Query: 450 EIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA- 508
           EIQNLIASD HPNIVRWYGVE D DFVYL+LERC C+LDDLI  YSD S NSV  EDQA 
Sbjct: 523 EIQNLIASDFHPNIVRWYGVEYDHDFVYLALERCACNLDDLITFYSDLSENSVLREDQAF 582

Query: 509 ---TRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV 549
               +A IE +   D ++       LWK++G+PSPLLL LMR V
Sbjct: 583 DFFKKAQIEAQ--RDDMQC------LWKSNGYPSPLLLKLMRDV 618

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457602|ref|XP_002272934.1| PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera]

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 317/598 (53%), Gaps = 82/598 (13%)

Query: 1   VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LG-RMKLPQ 58
           + W+F +G+ IYSSYQA     +D DN  +L+  FFIDCG+DW LY H +  G R KL  
Sbjct: 73  ILWSFASGSSIYSSYQA----FLDGDNDKQLSTDFFIDCGDDWELYRHNISFGKREKLLL 128

Query: 59  SIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS--STLQNEEQKSA 116
           + + YV+ AP+++++G VT+GSK TTVF+++AK+G +I T+ S  S      Q++E+   
Sbjct: 129 TPEKYVEGAPYVSKDG-VTVGSKKTTVFLVDAKSGTIINTFRSDASPLIGGFQSDEENPI 187

Query: 117 SYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIG 176
             + +    E+L++ G     +LQ  E   L+I RTDY LQ F P S  V W++  A+I 
Sbjct: 188 LSREEI---EELIEPG---DVDLQKVE-LPLYIMRTDYVLQHFSPTSGKVLWNVKFADIE 240

Query: 177 YAFLCQDFENPFIGATMNTSYELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDS------ 230
             F C                E+G E   D + P  CQ++  + R R+ +  DS      
Sbjct: 241 AVFQC-------------PGTEIGSEYMSDIESPLHCQTRASVYRIREPSLLDSFPMHDR 287

Query: 231 ---------------SRRDNHGK----------PKMLPA------PAPDPMAFMQPKADK 259
                          S   +H            PK LPA      PA +P +  QP   +
Sbjct: 288 LPKTLPAVEVLSLPASEPKSHSLLDSFPMHDRLPKALPAVEVLSLPASEPKSLSQP-VGR 346

Query: 260 LSELHHNDGGEGVLTLPPLETRVSGIVDAYDVRTPYKNVLSMLFEQSTALSLLLLAMT-V 318
           L   HH   G+ +L LP  E    G +  +       +++S++ +    L +    +  +
Sbjct: 347 LPGPHHLGQGKPLLALPLSE----GTLSVHGGDASEMDIMSIVSDNIEKLGIWAAPLLFI 402

Query: 319 VGFVVRNSLVAKGQFLLSGHPSLSNSRTAASKRKKVCK--LGKNGAVVEKKVENMSS--- 373
           VGF++      +        P  S  +  + K+KK  K  + KN A  EK+  N+S    
Sbjct: 403 VGFIIYQFFAVREPG--KSRPKDSKVQGISPKKKKARKSVINKNNASNEKRHGNISHESK 460

Query: 374 -GNENGFS-ISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEG 431
             + NG S + ++     L+ N L       R +GK+ VS  EIAKGSNGT+V EGIY+G
Sbjct: 461 VADNNGLSQVERNEIKLELNSNSLADVHVGERKIGKMLVSKKEIAKGSNGTIVLEGIYDG 520

Query: 432 RPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLI 491
           RPVAVKRLVR  HDVA KEIQNLIASDQHPNIVRW+GVE D+DFVYLSLERC CSL DLI
Sbjct: 521 RPVAVKRLVRTHHDVALKEIQNLIASDQHPNIVRWHGVEYDQDFVYLSLERCNCSLSDLI 580

Query: 492 QTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSLMRLV 549
              SDS  + +  +D  +  + EY +RL S+    +D  LWK +G+PSP LL LMR V
Sbjct: 581 YLCSDSQ-DQLVNQDWDSNILNEYIVRLHSIMDPNKDFELWKTNGYPSPQLLKLMRDV 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
TAIR|locus:2053928	841	IRE1A [Arabidopsis thaliana (t	0.357	0.233	0.541	2.3e-66
POMBASE|SPAC167.01	1072	ire1 "serine/threonine protein	0.160	0.082	0.477	9.7e-19
ZFIN|ZDB-GENE-090312-15	950	ern2 "endoplasmic reticulum to	0.304	0.175	0.318	3.8e-17
FB|FBgn0261984	1074	Ire1 "Inositol-requiring enzym	0.244	0.124	0.352	2.1e-16
ASPGD|ASPL0000060900	1121	AN0235 [Emericella nidulans (t	0.346	0.169	0.306	2.3e-16
UNIPROTKB|J9JHD8	962	ERN1 "Uncharacterized protein"	0.264	0.150	0.307	2e-15
UNIPROTKB|F1P7G9	976	ERN1 "Uncharacterized protein"	0.264	0.148	0.307	2.1e-15
UNIPROTKB|O75460	977	ERN1 "Serine/threonine-protein	0.264	0.148	0.301	2.2e-15
CGD|CAL0001725	1224	IRE1 [Candida albicans (taxid:	0.340	0.152	0.284	3.6e-15
UNIPROTKB|Q5A7G9	1224	IRE1 "Likely protein kinase/en	0.340	0.152	0.284	3.6e-15

TAIR|locus:2053928 IRE1A [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
 Identities = 110/203 (54%), Positives = 141/203 (69%)

Query:   345 RTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRN 404
             +   SK+KK  K  K     +   +++  G +  F +  +     L  N    G   GR 
Sbjct:   357 KAGPSKKKKNRKSAK-----DTNRQSVPRGQDQ-FELI-EGGQMLLGFNNFQSGATDGRK 409

Query:   405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIV 464
             +GKLF+S+ EIAKGSNGTVV+EGIYEGRPVAVKRLVR+ H+VAFKEIQNLIASDQH NI+
Sbjct:   410 IGKLFLSSKEIAKGSNGTVVFEGIYEGRPVAVKRLVRSHHEVAFKEIQNLIASDQHTNII 469

Query:   465 RWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKV 524
             RWYGVE D+DFVYLSLERCTCSLDDLI++Y + S   V   + +T  +  YK++LDS++ 
Sbjct:   470 RWYGVEYDQDFVYLSLERCTCSLDDLIKSYLEFSMTKVLENNDSTEGVAAYKIQLDSLEG 529

Query:   525 IIRDLSLWKADGHPSPLLLSLMR 547
             +I+  + WK  GHPSPL+L LMR
Sbjct:   530 VIKGNNFWKVGGHPSPLMLKLMR 552

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IMP

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IMP

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

POMBASE|SPAC167.01 ire1 "serine/threonine protein kinase, sensor for unfolded proteins in the ER Ire1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 211 (79.3 bits), Expect = 9.7e-19, Sum P(3) = 9.7e-19
 Identities = 42/88 (47%), Positives = 57/88 (64%)

Query:   405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIV 464
             V  L V    I  GS+GT+VY G+YE R VAVKR++   +D+A +EI  L  SD HPNIV
Sbjct:   650 VNSLTVYPEVIGYGSHGTIVYRGVYEDREVAVKRVLMEFYDLASREITLLQQSDNHPNIV 709

Query:   465 RWYGVENDKDFVYLSLERCTCSLDDLIQ 492
             R+Y  +    F+Y+ +E C C+L DLI+
Sbjct:   710 RYYCKQKSDQFLYIVIELCKCNLSDLIE 737

GO:0004521 "endoribonuclease activity" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO;IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

ZFIN|ZDB-GENE-090312-15 ern2 "endoplasmic reticulum to nucleus signaling 2" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
 Identities = 57/179 (31%), Positives = 92/179 (51%)

Query:   372 SSGNENGFSISKDASDPFLDLNKLVRGG-AQGRNVGKLFVSNTEI-AKGSNGTVVYEGIY 429
             SS +E   S++ + + PF + +       A    VGK+  S TE+   G+ GT V+ G +
Sbjct:   514 SSRSEKTSSVASNQTQPFSNCDVYSSDEQADVVEVGKISFSPTEVLGHGTEGTFVFRGHF 573

Query:   430 EGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDD 489
             +GR VAVKR++    + A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L  
Sbjct:   574 DGRRVAVKRILPECVEFAEREVQLLRESDEHPNVIRYFCTERDRQFTYIAIELCAATLQH 633

Query:   490 L--IQTYSDSSC-NSVFGEDQATRAMIEYKLRLDSVKVIIRDLSLWKADGHPSPLLLSL 545
                +Q   D SC +S           +     L S+ ++ RDL        P  +LLSL
Sbjct:   634 CCWMQYVEDPSCPHSELNPVSLLEQTMCGLSHLHSLNIVHRDLK-------PRNILLSL 685

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

FB|FBgn0261984 Ire1 "Inositol-requiring enzyme-1" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 50/142 (35%), Positives = 78/142 (54%)

Query:   349 SKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGRNVGKL 408
             S  +++ K  +NG+      +N S+G+      + +A D  +DL     G  Q R VGK+
Sbjct:   494 STMRELQKQSENGSKTFAIAQNGSNGSTGSNGSNANAED-LVDL-----GNGQVR-VGKI 546

Query:   409 -FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
              F +N  + KG  GT V++G +E R VAVKRL+      A +E+  L  SD H N+VR++
Sbjct:   547 SFSTNEVLGKGCEGTFVFKGTFEERFVAVKRLLPECFTFADREVALLRESDAHENVVRYF 606

Query:   468 GVENDKDFVYLSLERCTCSLDD 489
               E D+ F Y+++E C  +L D
Sbjct:   607 CTEQDRQFRYIAVELCAATLQD 628

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0004521 "endoribonuclease activity" evidence=ISS;IDA;IMP

GO:0004672 "protein kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=IMP

GO:0034976 "response to endoplasmic reticulum stress" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP;IDA

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0070055 "HAC1-type intron splice site recognition and cleavage" evidence=IMP

GO:0007030 "Golgi organization" evidence=IMP

ASPGD|ASPL0000060900 AN0235 [Emericella nidulans (taxid:162425)]

 Score = 211 (79.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
 Identities = 61/199 (30%), Positives = 99/199 (49%)

Query:   340 SLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENG-FSISKDAS-DPFLDLNKLVR 397
             SL +       RK+  + GK+    +KK+E+    +++   ++   A  D  L L +   
Sbjct:   610 SLQDGEKKKKTRKRGSRGGKSHRRGKKKIESEKEESDHAPGTLQPPAGPDAGLALTRTAS 669

Query:   398 GG---AQGR-NVGKLFVSNTEI-AKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQ 452
                  A G   +G+L V   ++   GS+GTVVY G ++GR VAVKR++   +D+A  E+ 
Sbjct:   670 NEVFEADGVIQIGRLKVFTADVLGHGSHGTVVYRGSFDGRDVAVKRMLVEFYDIASHEVG 729

Query:   453 NLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYS--DSSCNSVFGEDQATR 510
              L  SD H N++R+Y  E  K F Y++LE C  SL D+++         N         R
Sbjct:   730 LLQESDDHNNVIRYYCREQAKGFFYIALELCPASLQDVVERPDAFPQLVNGGLDMPDVLR 789

Query:   511 AMIEYKLRLDSVKVIIRDL 529
              ++     L S+K++ RDL
Sbjct:   790 QIVAGVRYLHSLKIVHRDL 808

GO:0005524 "ATP binding" evidence=IEA

GO:0016891 "endoribonuclease activity, producing 5'-phosphomonoesters" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0006020 "inositol metabolic process" evidence=IEA

GO:0070055 "HAC1-type intron splice site recognition and cleavage" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0009405 "pathogenesis" evidence=IEA

UNIPROTKB|J9JHD8 ERN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 47/153 (30%), Positives = 81/153 (52%)

Query:   380 SISKDASDPFLDLNKLVRGGAQGRNVGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKR 438
             S SK  S PFL+ +      +    VGK+ F     +  G+ GT+VY G+++ R VAVKR
Sbjct:   527 SASKAGSSPFLEQDDEDEETSMVI-VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKR 585

Query:   439 LVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQT--YSD 496
             ++      A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L + ++   ++ 
Sbjct:   586 ILPECFSFADREVQLLRESDEHPNVIRYFCTERDRQFQYIAIELCAATLQEYVEQKDFAH 645

Query:   497 SSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL 529
                  +    Q T  +      L S+ ++ RDL
Sbjct:   646 LGLEPITLLQQTTSGLAH----LHSLNIVHRDL 674

GO:0006397 "mRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|F1P7G9 ERN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
 Identities = 47/153 (30%), Positives = 81/153 (52%)

Query:   380 SISKDASDPFLDLNKLVRGGAQGRNVGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKR 438
             S SK  S PFL+ +      +    VGK+ F     +  G+ GT+VY G+++ R VAVKR
Sbjct:   541 SASKAGSSPFLEQDDEDEETSMVI-VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKR 599

Query:   439 LVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQT--YSD 496
             ++      A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L + ++   ++ 
Sbjct:   600 ILPECFSFADREVQLLRESDEHPNVIRYFCTERDRQFQYIAIELCAATLQEYVEQKDFAH 659

Query:   497 SSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL 529
                  +    Q T  +      L S+ ++ RDL
Sbjct:   660 LGLEPITLLQQTTSGLAH----LHSLNIVHRDL 688

GO:0006397 "mRNA processing" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|O75460 ERN1 "Serine/threonine-protein kinase/endoribonuclease IRE1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 48/159 (30%), Positives = 84/159 (52%)

Query:   377 NGFSISKDASDPFLDLNKLVRGGAQGRNV---GKL-FVSNTEIAKGSNGTVVYEGIYEGR 432
             +G S SK  S P L+ +     G +  +V   GK+ F     +  G+ GT+VY G+++ R
Sbjct:   539 SGSSASKAGSSPSLEQDD----GDEETSVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNR 594

Query:   433 PVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
              VAVKR++      A +E+Q L  SD+HPN++R++  E D+ F Y+++E C  +L + ++
Sbjct:   595 DVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEYVE 654

Query:   493 T--YSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL 529
                ++      +    Q T  +      L S+ ++ RDL
Sbjct:   655 QKDFAHLGLEPITLLQQTTSGLAH----LHSLNIVHRDL 689

GO:0006397 "mRNA processing" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=IDA;TAS

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0004521 "endoribonuclease activity" evidence=IDA;TAS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0007050 "cell cycle arrest" evidence=ISS

GO:1900103 "positive regulation of endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

CGD|CAL0001725 IRE1 [Candida albicans (taxid:5476)]

 Score = 206 (77.6 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
 Identities = 58/204 (28%), Positives = 107/204 (52%)

Query:   341 LSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNE-------NGFSISKDASDPFLDL- 392
             ++   T   KRK+  + G+ G    K  +  ++G+E       N  S+  +   P   L 
Sbjct:   691 INEETTPKKKRKRGSRGGRRGGA-RKNNKQKTNGDEDQEDQQQNDESVVDEEIIPTKSLI 749

Query:   393 --NKL--VRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF 448
               + L  ++   + +    L +S+  +  GS+GTVV++G +E RPVAVKR++   +D+A 
Sbjct:   750 PPSSLPAIKSRKKLQIENNLVISDKILGYGSHGTVVFQGTFENRPVAVKRMLLDFYDIAN 809

Query:   449 KEIQNLIASDQHPNIVRWY---GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGE 505
              E++ L  SD HPN+VR++     E++K F+Y++LE C C+L+D+I+   +     +   
Sbjct:   810 HEVRLLQESDDHPNVVRYFCSQSSESEK-FLYIALELCLCTLEDIIEKPQNMPNLCIPKR 868

Query:   506 DQATRAMIEYKLRLDSVKVIIRDL 529
             +     +      L S+K++ RD+
Sbjct:   869 NDILYQLTSGLHYLHSLKIVHRDI 892

GO:0035690 "cellular response to drug" evidence=IMP

GO:0004521 "endoribonuclease activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0031505 "fungal-type cell wall organization" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0006020 "inositol metabolic process" evidence=IEA

UNIPROTKB|Q5A7G9 IRE1 "Likely protein kinase/endoribonuclease Ire1" [Candida albicans SC5314 (taxid:237561)]

 Score = 206 (77.6 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
 Identities = 58/204 (28%), Positives = 107/204 (52%)

Query:   341 LSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNE-------NGFSISKDASDPFLDL- 392
             ++   T   KRK+  + G+ G    K  +  ++G+E       N  S+  +   P   L 
Sbjct:   691 INEETTPKKKRKRGSRGGRRGGA-RKNNKQKTNGDEDQEDQQQNDESVVDEEIIPTKSLI 749

Query:   393 --NKL--VRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF 448
               + L  ++   + +    L +S+  +  GS+GTVV++G +E RPVAVKR++   +D+A 
Sbjct:   750 PPSSLPAIKSRKKLQIENNLVISDKILGYGSHGTVVFQGTFENRPVAVKRMLLDFYDIAN 809

Query:   449 KEIQNLIASDQHPNIVRWY---GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGE 505
              E++ L  SD HPN+VR++     E++K F+Y++LE C C+L+D+I+   +     +   
Sbjct:   810 HEVRLLQESDDHPNVVRYFCSQSSESEK-FLYIALELCLCTLEDIIEKPQNMPNLCIPKR 868

Query:   506 DQATRAMIEYKLRLDSVKVIIRDL 529
             +     +      L S+K++ RD+
Sbjct:   869 NDILYQLTSGLHYLHSLKIVHRDI 892

GO:0035690 "cellular response to drug" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.709.1 hypothetical protein (822 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	549
cd09213	312	cd09213, Luminal_IRE1_like, The Luminal domain, a	1e-33
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-10
cd09769	295	cd09769, Luminal_IRE1, The Luminal domain, a dimer	8e-09
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-08
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-08
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-08
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-06
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	4e-05
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-04
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-04
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-04
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-04
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	7e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.001
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.001
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	0.001
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	0.001
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.002

>gnl|CDD|188873 cd09213, Luminal_IRE1_like, The Luminal domain, a dimerization domain, of Inositol-requiring protein 1-like proteins

 Score =  129 bits (326), Expect = 1e-33
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 27/192 (14%)

Query: 3   WTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLL--GRMKLPQSI 60
           W+F  G P+YSSYQ+         NA   +         D  LY H        +LP +I
Sbjct: 23  WSFDGGGPLYSSYQS-----SRDGNAESSSTMLIPSLDGDGNLYQHDKGHGSLQRLPLTI 77

Query: 61  DDYVKTAPHITEE---GAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSAS 117
           +D V+ +P +++      V +GSK T+VF L+AKTG++I+TY +    ST  ++   +++
Sbjct: 78  EDLVEASPLVSDTNEDDVVVVGSKRTSVFALDAKTGKIIKTYRADGLPSTGGSDSDGNST 137

Query: 118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY 177
              D++                  +E  LL+I RTDY LQ+ +P S    W++T  E   
Sbjct: 138 PGPDEL-----------------QEEEELLYIGRTDYVLQAIDPRSGKELWNVTYGEYEA 180

Query: 178 AFLCQDFENPFI 189
             L  D      
Sbjct: 181 LTLDADELGTSS 192

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), eukaryotic translation Initiation Factor 2-Alpha Kinase 3 (EIF2AK3), and similar proteins. IRE1 and EIF2AK3 are serine/threonine protein kinases (STKs) and are type I transmembrane proteins that are localized in the endoplasmic reticulum (ER). They are kinase receptors that are activated through the release of BiP, a chaperone bound to their luminal domains under unstressed conditions. This results in dimerization through their luminal domains, allowing trans-autophosphorylation of their kinase domains and activation. They play roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), contains an endoribonuclease domain in its cytoplasmic side and acts as an ER stress sensor. It is the oldest and most conserved component of the UPR in eukaryotes. Its activation results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. EIF2AK3, also called PKR-like Endoplasmic Reticulum Kinase (PERK), phosphorylates the alpha subunit of eIF-2, resulting in the downregulation of protein synthesis. It functions as the central regulator of translational control during the UPR pathway. In addition to the eIF-2 alpha subunit, EIF2AK3 also phosphorylates Nrf2, a leucine zipper transcription factor which regulates cellular redox status and promotes cell survival during the UPR. Length = 312

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 23/128 (17%)

Query: 415 IAKGSNGTVVYEGIY--EGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYG 468
           + +G  GTV Y       G+ VA+K + +    +L +   +EI+ L     HPNIV+ YG
Sbjct: 1   LGEGGFGTV-YLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEIL-KKLNHPNIVKLYG 58

Query: 469 VENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDS 521
           V  D++ +YL +E C   SL DL++            ED+  R +      +EY   L S
Sbjct: 59  VFEDENHLYLVMEYCEGGSLKDLLK-----ENEGKLSEDEILRILLQILEGLEY---LHS 110

Query: 522 VKVIIRDL 529
             +I RDL
Sbjct: 111 NGIIHRDL 118

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|188875 cd09769, Luminal_IRE1, The Luminal domain, a dimerization domain, of the Serine/Threonine protein kinase, Inositol-requiring protein 1

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 43/181 (23%)

Query: 3   WTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLL--GRMKLPQSI 60
           W+     P+    + P  +T+  D  +     F ++   D  LY       G  KLP +I
Sbjct: 25  WSLKAEDPLV---EVPHHSTLSIDGPT-----FIVE-PRDGSLYVLNPGNEGLKKLPFTI 75

Query: 61  DDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGS-------PHSSSTLQNEEQ 113
              V+++P  + +G +  GSK TT + ++ +TG  I+  GS       P S     ++EQ
Sbjct: 76  PQLVQSSPCRSSDGILYTGSKQTTWYTVDPRTGEKIQVLGSGGADSNCPESCVDPDDDEQ 135

Query: 114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA 173
              S                             ++I RT+YT+  ++  +    W++T +
Sbjct: 136 SECSSSS-------------------------TIYIGRTEYTVTIYDSKTREPIWNVTYS 170

Query: 174 E 174
           +
Sbjct: 171 D 171

The Luminal domain is a dimerization domain present in Inositol-requiring protein 1 (IRE1), a serine/threonine protein kinase (STK) and a type I transmembrane protein that is localized in the endoplasmic reticulum (ER). IRE1, also called Endoplasmic reticulum (ER)-to-nucleus signaling protein (or ERN), is a kinase receptor that also contains an endoribonuclease domain in the cytoplasmic side. It plays roles in the signaling of the unfolded protein response (UPR), which is activated when protein misfolding is detected in the ER in order to decrease the synthesis of new proteins and increase the capacity of the ER to cope with the stress. IRE1 acts as an ER stress sensor and is the oldest and most conserved component of the UPR in eukaryotes. During ER stress, IRE1 dimerizes through its luminal domain and forms oligomers, allowing the kinase domain to undergo trans-autophosphorylation. This leads to a conformational change that stimulates its endoribonuclease activity and results in the cleavage of its mRNA substrate, HAC1 in yeast and Xbp1 in metazoans, promoting a splicing event that enables translation into a transcription factor which activates the UPR. Mammals contain two IRE1 proteins, IRE1alpha (or ERN1) and IRE1beta (or ERN2). IRE1alpha is expressed in all cells and tissues while IRE1beta is found only in intestinal epithelial cells. Length = 295

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 25/135 (18%)

Query: 409 FVSNTEIAKGSNGTVVYEGIY--EGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHP 461
           +    ++  GS GTV Y+  +   G+ VAVK L +          A +EI+ L     HP
Sbjct: 1   YELLRKLGSGSFGTV-YKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRIL-RRLSHP 58

Query: 462 NIVRWYGVENDKDFVYLSLERC-TCSLDDLIQTYSDSSCNSVFGEDQATRAM------IE 514
           NIVR      DKD +YL +E C    L D +             ED+A +        +E
Sbjct: 59  NIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR------GGPLSEDEAKKIALQILRGLE 112

Query: 515 YKLRLDSVKVIIRDL 529
           Y   L S  +I RDL
Sbjct: 113 Y---LHSNGIIHRDL 124

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 24/129 (18%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRL----VRALHDVAFKEIQNLIASDQHPNIVRWY 467
           +I KG  G  VY+  +   G+ VA+K +          +   EIQ ++   +HPNIV++Y
Sbjct: 7   KIGKGGFG-EVYKARHKRTGKEVAIKVIKLESKEKKEKI-INEIQ-ILKKCKHPNIVKYY 63

Query: 468 GVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQA---TRAMI---EYKLRLD 520
           G    KD +++ +E C+  SL DL++     S N    E Q     + ++   EY   L 
Sbjct: 64  GSYLKKDELWIVMEFCSGGSLKDLLK-----STNQTLTESQIAYVCKELLKGLEY---LH 115

Query: 521 SVKVIIRDL 529
           S  +I RD+
Sbjct: 116 SNGIIHRDI 124

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 20/94 (21%)

Query: 415 IAKGSNGTVVYEGIYE--GRPVAVKRL---------VRALHDVAFKEIQNLIASDQHPNI 463
           + +GS G+V Y  + +  G  +AVK +         + AL     +EI+ +++S QHPNI
Sbjct: 8   LGRGSFGSV-YLALDKDTGELMAVKSVELSGDSEEELEALE----REIR-ILSSLQHPNI 61

Query: 464 VRWYGVE--NDKDFVYLSLERCTC-SLDDLIQTY 494
           VR+YG E   +K+ + + LE  +  SL  L++ +
Sbjct: 62  VRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKF 95

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 24/129 (18%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHDV----AFKEIQNLIASDQHPNIVRWY 467
           ++ +GS G  VY       G+ VA+K + +           +EI+ L     HPNIVR Y
Sbjct: 6   KLGEGSFG-KVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLK-HPNIVRLY 63

Query: 468 GVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLD 520
            V  D+D +YL +E C    L DL++            ED+A   +      +EY   L 
Sbjct: 64  DVFEDEDKLYLVMEYCEGGDLFDLLKK------RGRLSEDEARFYLRQILSALEY---LH 114

Query: 521 SVKVIIRDL 529
           S  ++ RDL
Sbjct: 115 SKGIVHRDL 123

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 23/129 (17%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRA-LHDVAFKEIQ---NLIASDQHPNIVRWY 467
            I +G+ G VVY+G+    G  VA+K++    + + A K I    +L+ + +HPNIV++ 
Sbjct: 7   LIGRGAFG-VVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI 65

Query: 468 GVENDKDFVYLSLERC-TCSLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLD 520
           G     D +Y+ LE     SL  +I+ +        F E      +      + Y   L 
Sbjct: 66  GSIETSDSLYIILEYAENGSLRQIIKKFGP------FPESLVAVYVYQVLQGLAY---LH 116

Query: 521 SVKVIIRDL 529
              VI RD+
Sbjct: 117 EQGVIHRDI 125

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHD----VAFKEIQNLIASDQHPNIVRWY 467
           ++  G+ G+V Y       G  VA+K++ +  +     +  +E+++L   ++HPNIV+  
Sbjct: 6   QLGDGTFGSV-YLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLK 64

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQT 493
            V  + D +Y   E    +L  L++ 
Sbjct: 65  EVFRENDELYFVFEYMEGNLYQLMKD 90

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 25/127 (19%)

Query: 423 VVYEGIYEG-----RPVAVKRL----VRALHDVAFKEIQNLIASDQHPNIVRWYGVENDK 473
            VY+G  +G       VAVK L             KE   ++    HPN+VR  GV  ++
Sbjct: 10  EVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEA-RVMKKLGHPNVVRLLGVCTEE 68

Query: 474 DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGE----------DQATRAMIEYKLRLDSV 522
           + +YL LE      L D ++       +                Q  + M EY   L S 
Sbjct: 69  EPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGM-EY---LASK 124

Query: 523 KVIIRDL 529
           K + RDL
Sbjct: 125 KFVHRDL 131

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 27/133 (20%)

Query: 414 EIAKGSNGTVVYEGIYEGR------PVAVKRL---VRALHDVAF-KEIQNLIASDQHPNI 463
           ++ +G+ G V Y+G  +G        VAVK L           F +E   +     HPNI
Sbjct: 6   KLGEGAFGEV-YKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLS-HPNI 63

Query: 464 VRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGED------QATRAMIEYK 516
           VR  GV    + +Y+  E      L D ++ + +         D      Q  + M EY 
Sbjct: 64  VRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLK----DLLQMALQIAKGM-EY- 117

Query: 517 LRLDSVKVIIRDL 529
             L+S   + RDL
Sbjct: 118 --LESKNFVHRDL 128

Length = 258

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 415 IAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASD------QHPNIVRWYG 468
           I KG  G V   G Y G+ VAVK L            Q  +A        +HPN+V+  G
Sbjct: 14  IGKGEFGDV-MLGDYRGQKVAVKCLKDDS-----TAAQAFLAEASVMTTLRHPNLVQLLG 67

Query: 469 VENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAM-----IEYKLRLDSV 522
           V    + +Y+  E     SL D +++   +         Q   A+     +EY   L+  
Sbjct: 68  VVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVIT---LAQQLGFALDVCEGMEY---LEEK 121

Query: 523 KVIIRDLS 530
             + RDL+
Sbjct: 122 NFVHRDLA 129

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 415 IAKGSNGTVVYEGIY--EGRPVAVK-----RLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
           I  G+ G V Y  +    G  +AVK                 E++ L     HPN+V++Y
Sbjct: 8   IGGGTFGKV-YTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLK-HPNLVKYY 65

Query: 468 GVENDKDFVYLSLERC 483
           GVE  ++ VY+ +E C
Sbjct: 66  GVEVHREKVYIFMEYC 81

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%)

Query: 423 VVYEGIYEGRP------VAVKRLVRALHDVAFKEIQN---LIASDQHPNIVRWYGVENDK 473
            VY+G  +G+       VAVK L     +   +E      ++    HPN+V+  GV  ++
Sbjct: 14  EVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCTEE 73

Query: 474 DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGED------QATRAMIEYKLRLDSVKVII 526
           + +Y+ +E      L   ++        S    D      Q  R M EY   L+S   I 
Sbjct: 74  EPLYIVMEYMEGGDLLSYLRKNRPKLSLS----DLLSFALQIARGM-EY---LESKNFIH 125

Query: 527 RDL 529
           RDL
Sbjct: 126 RDL 128

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDV------AFKEIQNLIASDQHPNIVRWY 467
           ++ +GS G V Y      + VA+K L + L           +EIQ L + +  PNIV+ Y
Sbjct: 7   KLGEGSFGEV-YLARDR-KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKV 524
               D+  +YL +E        L              E +A   + +    L+   S  +
Sbjct: 65  DFFQDEGSLYLVMEYVDG--GSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGI 122

Query: 525 IIRDLS 530
           I RD+ 
Sbjct: 123 IHRDIK 128

Length = 384

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 28/142 (19%)

Query: 415 IAKGSNGTVVYEGIYE-GRPVAVKRL-VRALHD----VAFKEIQNLIASDQHPNIVRWYG 468
           I +G++G V      E G  VA+K++ +R L       A +EI+ L A  QHP +V+   
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC-QHPYVVKLLD 66

Query: 469 VENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDSV 522
           V        L +E     L ++++            E Q    M      + Y   + + 
Sbjct: 67  VFPHGSGFVLVMEYMPSDLSEVLRDEERP-----LPEAQVKSYMRMLLKGVAY---MHAN 118

Query: 523 KVIIRDLSLWKADGHPSPLLLS 544
            ++ RDL        P+ LL+S
Sbjct: 119 GIMHRDLK-------PANLLIS 133

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 11/90 (12%)

Query: 415 IAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDV----AFKEIQ---NLIASDQHPNIVR 465
           +  GS G+V YEG+   +G   AVK +  A        A K+++    L++  QHPNIV+
Sbjct: 8   LGSGSFGSV-YEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTY 494
           + G E ++D +Y+ LE     SL  L++ Y
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLAKLLKKY 96

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 13/126 (10%)

Query: 414 EIAKGSNGTVV-YEGIYEGRPVAVKR-----LVRALHDVAFKEIQNLIASDQHPNIVRWY 467
           +I KGS G V       +G+   +K      +     + A  E++ ++    HPNI+++Y
Sbjct: 7   QIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVK-ILKKLNHPNIIKYY 65

Query: 468 GVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVK 523
               +K  + + +E      L   I+          F E+Q     ++  L L    S K
Sbjct: 66  ESFEEKGKLCIVMEYADGGDLSQKIK--KQKKEGKPFPEEQILDWFVQLCLALKYLHSRK 123

Query: 524 VIIRDL 529
           ++ RD+
Sbjct: 124 ILHRDI 129

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 26/133 (19%)

Query: 414 EIAKGSNGTVVYEGIYEGR------PVAVKRLVRALHDVAFKEIQN---LIASDQHPNIV 464
           ++ +G+ G  VY+G  +G+       VAVK L     +   +E      ++    HPNIV
Sbjct: 6   KLGEGAFG-EVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIV 64

Query: 465 RWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGED-------QATRAMIEYK 516
           +  GV  +++ + + +E      L D ++                     Q  R M EY 
Sbjct: 65  KLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNR----PKELSLSDLLSFALQIARGM-EY- 118

Query: 517 LRLDSVKVIIRDL 529
             L+S   I RDL
Sbjct: 119 --LESKNFIHRDL 129

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 409 FVSNTEIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHDVAFK-----EIQNLIASDQHP 461
                 + +GS+G V Y+  +   G+  A+K+ +    D  F+     E++ L +  + P
Sbjct: 3   LERVKVLGQGSSGVV-YKVRHKPTGKIYALKK-IHVDGDEEFRKQLLRELKTLRSC-ESP 59

Query: 462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQ 492
            +V+ YG    +  + + LE     SL DL++
Sbjct: 60  YVVKCYGAFYKEGEISIVLEYMDGGSLADLLK 91

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 39/143 (27%)

Query: 421 GT--VVYEGI--YEGRPVAVKRLVRALHD------VAFKEI---QNLIASDQHPNIVRWY 467
           GT  VVY+      G  VA+K+ +R  ++       A +EI   + L    +HPNIV+  
Sbjct: 10  GTYGVVYKARDKKTGEIVALKK-IRLDNEEEGIPSTALREISLLKEL----KHPNIVKLL 64

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDS 521
            V + +  +YL  E C   L   +              +     M      + Y     S
Sbjct: 65  DVIHTERKLYLVFEYCDMDLKKYL-----DKRPGPLSPNLIKSIMYQLLRGLAY---CHS 116

Query: 522 VKVIIRDLSLWKADGHPSPLLLS 544
            +++ RDL   K    P  +L++
Sbjct: 117 HRILHRDL---K----PQNILIN 132

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	549
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.87
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.83
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.82
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.81
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.8
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.8
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.8
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.8
KOG0605	550	consensus NDR and related serine/threonine kinases	99.79
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.77
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.77
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.76
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.76
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.75
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.73
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.72
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.72
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.71
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.71
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.7
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.7
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.7
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.7
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.7
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.7
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.69
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.69
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.69
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.68
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.68
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.68
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.67
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.67
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.67
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.67
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.67
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.67
KOG0610	459	consensus Putative serine/threonine protein kinase	99.66
KOG0198	313	consensus MEKK and related serine/threonine protei	99.66
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.66
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.65
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.65
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.65
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.65
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.65
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.65
KOG0586	596	consensus Serine/threonine protein kinase [General	99.65
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.65
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.64
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.64
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.64
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.64
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.64
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.63
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.63
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.63
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.63
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.63
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.63
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.63
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.63
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.63
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.63
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.62
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.62
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.62
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.62
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.62
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.62
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.62
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.62
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.62
PHA03212	391	serine/threonine kinase US3; Provisional	99.62
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.62
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.61
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.61
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.61
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.61
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.61
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.61
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.61
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.61
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.6
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.6
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.6
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.6
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.6
PHA03207	392	serine/threonine kinase US3; Provisional	99.6
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.6
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.6
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.59
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.59
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.59
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.59
KOG0589	426	consensus Serine/threonine protein kinase [General	99.59
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.59
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.59
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.59
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.59
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.59
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.58
PTZ00036	440	glycogen synthase kinase; Provisional	99.58
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.58
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.58
PHA03209	357	serine/threonine kinase US3; Provisional	99.58
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.57
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.57
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.57
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.57
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.57
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.57
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.57
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.57
KOG1152	772	consensus Signal transduction serine/threonine kin	99.57
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.57
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.56
KOG0578	550	consensus p21-activated serine/threonine protein k	99.56
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.56
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.56
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.56
PTZ00267	478	NIMA-related protein kinase; Provisional	99.56
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.56
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.56
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.56
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.55
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.55
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.55
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.55
PHA03211	461	serine/threonine kinase US3; Provisional	99.55
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.55
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.54
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.54
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.54
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.54
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.54
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.54
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.53
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.53
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.53
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.53
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.53
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.53
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.53
KOG3653	534	consensus Transforming growth factor beta/activin	99.53
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.53
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.53
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.52
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.52
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.52
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.52
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.52
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.52
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.52
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.52
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.52
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.51
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.51
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.51
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.51
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.51
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.51
PTZ00283	496	serine/threonine protein kinase; Provisional	99.51
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.51
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.51
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.5
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.5
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.5
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.5
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.5
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.5
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.5
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.5
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.5
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.5
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.49
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.49
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.49
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.49
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.49
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.49
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.49
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.49
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.49
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.49
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.49
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.49
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.49
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.49
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.49
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.49
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.49
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.49
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.48
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.48
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.48
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.48
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.48
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.48
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.48
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.48
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.48
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.48
PHA03210	501	serine/threonine kinase US3; Provisional	99.48
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.48
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.48
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.48
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.48
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.48
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.48
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.47
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.47
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.47
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.47
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.47
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.47
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.47
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.47
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.47
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.47
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.47
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.47
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.47
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.47
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.47
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.47
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.47
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.47
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.46
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.46
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.46
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.46
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.46
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.46
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.46
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.46
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.46
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.46
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.46
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.46
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.46
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.46
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.45
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.45
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.45
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.45
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.45
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.45
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.45
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.45
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.45
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.45
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.45
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.44
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.44
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.44
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.44
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.44
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.44
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.44
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.44
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.44
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.44
PLN00009	294	cyclin-dependent kinase A; Provisional	99.44
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.44
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.44
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.44
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.44
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.44
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.44
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.44
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.43
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.43
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.43
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.43
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.43
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.43
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.43
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.43
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.43
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.43
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.43
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.43
PHA02988	283	hypothetical protein; Provisional	99.43
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.43
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.43
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.43
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.43
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.43
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.43
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.43
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.43
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.42
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.42
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.42
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.42
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.42
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.42
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.42
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.42
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.42
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.42
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.42
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.42
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.42
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.42
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.42
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.42
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.42
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.42
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.42
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.41
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.41
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.41
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.41
PTZ00284	467	protein kinase; Provisional	99.41
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.41
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.41
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.41
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.41
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.41
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.41
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.41
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.41
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.41
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.41
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.4
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.4
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.4
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.4
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.4
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	99.4
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.4
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.4
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.4
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.4
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.39
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.39
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.39
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.39
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.39
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.39
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.39
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.39
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.39
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.38
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.38
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.38
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.38
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.38
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.38
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.38
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.38
PRK09188	365	serine/threonine protein kinase; Provisional	99.38
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.37
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.37
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.37
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.37
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.37
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.37
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.37
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.37
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.37
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.37
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.37
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.36
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.36
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.36
KOG0584	632	consensus Serine/threonine protein kinase [General	99.36
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.36
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.36
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.35
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.35
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.35
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.34
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.34
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.34
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.34
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.34
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.34
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.33
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.33
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.32
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.32
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.32
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.31
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.31
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.31
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.31
PRK10345	210	hypothetical protein; Provisional	99.3
PHA02882	294	putative serine/threonine kinase; Provisional	99.28
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.28
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.27
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.27
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.27
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.27
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.26
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.21
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.17
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.17
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.17
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	99.15
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	99.15
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.15
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	99.13
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.12
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.12
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.11
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.1
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.1
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.06
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.06
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.02
smart00090	237	RIO RIO-like kinase.	99.01
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.01
PRK12274	218	serine/threonine protein kinase; Provisional	99.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.94
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	98.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.91
PRK14879	211	serine/threonine protein kinase; Provisional	98.9
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.88
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.86
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.83
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.83
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.81
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.71
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.59
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.59
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.56
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	98.51
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.43
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.31
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	98.19
PLN00181	793	protein SPA1-RELATED; Provisional	98.08
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.08
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.06
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.02
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	97.99
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	97.94
COG4993	773	Gcd Glucose dehydrogenase [Carbohydrate transport	97.87
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.84
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.61
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	97.6
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	97.51
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.31
KOG3087	229	consensus Serine/threonine protein kinase [General	97.25
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	97.2
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	97.19
KOG0590	601	consensus Checkpoint kinase and related serine/thr	97.13
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	96.96
KOG1243	690	consensus Protein kinase [General function predict	96.83
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	96.56
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	96.55
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.55
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.54
KOG0606	1205	consensus Microtubule-associated serine/threonine	96.49
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	96.3
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	96.11
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	95.76
PRK09902	216	hypothetical protein; Provisional	95.49
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	95.45
COG0478	304	RIO-like serine/threonine protein kinase fused to	95.36
COG0661	517	AarF Predicted unusual protein kinase [General fun	94.6
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	94.51
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	93.69
KOG1266	458	consensus Protein kinase [Signal transduction mech	93.54
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.01
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.69
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	91.84
KOG0296	399	consensus Angio-associated migratory cell protein	91.4
KOG0278	334	consensus Serine/threonine kinase receptor-associa	91.25
KOG1235	538	consensus Predicted unusual protein kinase [Genera	91.17
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.91
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	90.4
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	88.82
KOG0284	464	consensus Polyadenylation factor I complex, subuni	88.53
KOG0316	307	consensus Conserved WD40 repeat-containing protein	87.08
KOG1539	910	consensus WD repeat protein [General function pred	86.9
KOG0606	1205	consensus Microtubule-associated serine/threonine	86.81
KOG0282	503	consensus mRNA splicing factor [Function unknown]	86.62
KOG2268	465	consensus Serine/threonine protein kinase [Signal	86.49
KOG0296	399	consensus Angio-associated migratory cell protein	86.24
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	84.52
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	83.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	83.09
KOG0316	307	consensus Conserved WD40 repeat-containing protein	82.74
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	82.03
KOG0266	456	consensus WD40 repeat-containing protein [General	81.86
PLN02876	822	acyl-CoA dehydrogenase	81.57
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	81.56

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-40  Score=355.71  Aligned_cols=436  Identities=26%  Similarity=0.359  Sum_probs=280.9

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      -.|+++..||+||.+.- .+.+|+||++++.|+.+||.++||.+|.|+|++.||.||++||+.+|+|.+..         
T Consensus        67 ~~fl~~p~dgsly~l~~~~sL~Klpftipelv~~~pcrssdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~---------  137 (903)
T KOG1027|consen   67 PAFLPDPRDGSLYTLGNNLSLTKLPFTIPELVNASPCRSSDGILYSGSKQDIWYLVDPKTGEIDYTFNTAE---------  137 (903)
T ss_pred             cccCCCccccceeeccCCCccccCCccchhhhccCcccCCCCeEEecccccceEEecCCccceeEEEecCC---------
Confidence            44899999999999998 89999999999999999999999999999999999999999999999998853         


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhccccCCcc----
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPF----  188 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~~~~~~----  188 (549)
                                             + .     ..+||+|||+|+|.+.|+++-...||+++++|.|.++.......+    
T Consensus       138 -----------------------~-~-----~~~v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a~~~~~~~~~~~~~~~  188 (903)
T KOG1027|consen  138 -----------------------P-I-----KQLVYLGRTNYTVTMYDKNVRGKTWNTTFGDYSAQYPSGVRGEKMSHFH  188 (903)
T ss_pred             -----------------------c-c-----hhheecccceeEEecccCcccCceeeccccchhccCCCccCCceeEEEe
Confidence                                   1 1     159999999999999999999999999999999998877554432    


Q ss_pred             -----cccccccc--cccCcccccCCCccccccchhHHHHhhhccCCCCcc----c------cCCCCCCCCC-CCCCCCc
Q 042769          189 -----IGATMNTS--YELGPEIGHDFDLPFACQSKGIIQRFRKHNNSDSSR----R------DNHGKPKMLP-APAPDPM  250 (549)
Q Consensus       189 -----~~~~~~~~--~~l~~~w~~~~~~p~~~~~~~~~~~~~~~~l~~~~~----~------~~~~~~~~l~-~~~~~~~  250 (549)
                           +.++++.+  ..   .|.+|..+||+.     .|.++..++..+..    +      ...++.+.+. .|..+..
T Consensus       189 ~~~~g~i~t~D~~~g~~---~~~q~~~spvv~-----~~~~~~~gl~~~~~~~v~~~t~~~~~~~~~~v~~~~~~~~~~s  260 (903)
T KOG1027|consen  189 SLGNGYIVTVDSESGEK---LWLQDLLSPVVA-----LYTLFNDGLHSYPFVTVARETYQINALESGTVLLNIAPTKDES  260 (903)
T ss_pred             ecCCccEEeccCcccce---eeccccCCceEE-----EEeeccCceeeecceehhHHHHHHHHhhccccccccCCCcCcc
Confidence                 22222222  22   299999999999     66666666665532    1      4445555553 3332222


Q ss_pred             cccc-cccccccccccCCCCcceeecCC-ccceeccee---ecccccCchhHHHHH------HHhhhhHHHHHHHH----
Q 042769          251 AFMQ-PKADKLSELHHNDGGEGVLTLPP-LETRVSGIV---DAYDVRTPYKNVLSM------LFEQSTALSLLLLA----  315 (549)
Q Consensus       251 ~~~~-~~~~~~~~~~~g~~~~~~y~~~~-~~~~~~~~~---~~~~~~~p~~~~~~~------~~~~s~~l~~~~~i----  315 (549)
                      ...+ -..+..+++|+|++..++|++++ ++..++..+   -|-..++|+++.++.      .+..++.+.+...+    
T Consensus       261 ~~~s~~~~~~~~~l~~~~~~~~l~~~~~~v~~~v~~~~~~~t~~~~e~~~~~~~~~~~~~~~~~~~s~~~~~p~~~~~~~  340 (903)
T KOG1027|consen  261 PLESSLDFQLLPTLYVGDSSTGLYASFSLVHQNVPLVPRAATLPLLEGPTTDKVTLQSTGERKFPPSTLLRFPSGSLLRY  340 (903)
T ss_pred             ccccccccccceeeEecCceeeEEeehhhcccCceeccCCCCCccccCcccchhhhhhcccccCCchhhhhCCCcccccc
Confidence            2222 22244689999999999999999 334433211   111256666555542      01111111100000    


Q ss_pred             ----Hhhheeeee-------------------------------------------------------------------
Q 042769          316 ----MTVVGFVVR-------------------------------------------------------------------  324 (549)
Q Consensus       316 ----l~li~~~~~-------------------------------------------------------------------  324 (549)
                          ++++|...+                                                                   
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~l~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~i  420 (903)
T KOG1027|consen  341 IANEWLLMGHHELPLVLYTPMAEIHPYNDGTRLPLNNEKNAFSLLSLPGPELVESELDPKTDGLPMALLASTPIGLLVLI  420 (903)
T ss_pred             cccccccccccccchhhhhhHHhhccccCCCCCCCCCcccccccccCCChhhhccccCccccCccchhhhcccchhHHHH
Confidence                111111110                                                                   


Q ss_pred             ----------cceeecceeeeccCCCCCcchhhhhhhchhhcc--CCCCceeeeecccccCCCCCceeeccCCCCcccch
Q 042769          325 ----------NSLVAKGQFLLSGHPSLSNSRTAASKRKKVCKL--GKNGAVVEKKVENMSSGNENGFSISKDASDPFLDL  392 (549)
Q Consensus       325 ----------~~~~~~~~~~~~~~~~~~~~~~~p~Kkkk~rk~--~k~~~~~e~~~~~~s~e~~~~~s~~~~~~~~~~~~  392 (549)
                                +. +..     +.+ .+..+.   .|.++.++.  .+.....+..+.  .. ....++..+...+.....
T Consensus       421 ~~~~l~~~~i~~-~~~-----k~~-q~~~s~---~~~k~~~~~~~~~~~~~~~~e~s--e~-~~~~~~~s~~~k~~~~~~  487 (903)
T KOG1027|consen  421 VCAFLLFFKILG-LFG-----KNQ-QPQVSI---TKQKQVEKPSDPKSGTAEENEQS--ES-KDLSPSDSEISKKLSTGS  487 (903)
T ss_pred             HHHHHHHHhHhh-hhc-----ccc-Ccchhh---hhhhhhccccCcccccccccccC--cc-cCCCccccccccccCCCC
Confidence                      00 001     001 111111   111111111  100000000000  00 000111111111111111


Q ss_pred             hhhhhc-----CcC-Cccceee-eeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeE
Q 042769          393 NKLVRG-----GAQ-GRNVGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVR  465 (549)
Q Consensus       393 ~~~~~~-----~~~-~~~igk~-y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVr  465 (549)
                      +.....     ... ....++. |...+++|.|+.|+|+++|.+.||.||||++..++...+.+|+..|+...+||||||
T Consensus       488 ~~~~~~~~~~~~~~~~~v~~k~~~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviR  567 (903)
T KOG1027|consen  488 PSSKASSLDGPEAGGKVVVGKLFFSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIR  567 (903)
T ss_pred             cccccccccccccccceeeeeeeeccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEE
Confidence            111111     111 2233344 555789999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeccCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          466 WYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       466 l~g~~~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +|+...+..+.||.+|+|.++|.+++....  ...........+..+.|+   |+|||+.+|||||||
T Consensus       568 yyc~E~d~qF~YIalELC~~sL~dlie~~~--~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLk  633 (903)
T KOG1027|consen  568 YYCSEQDRQFLYIALELCACSLQDLIESSG--LDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLK  633 (903)
T ss_pred             EEeeccCCceEEEEehHhhhhHHHHHhccc--cchhhcccccHHHHHHHHHHHHHHHHhcccccccCC
Confidence            999999999999999999999999998731  111111214456667777   999999999999999

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.87  E-value=5e-23  Score=210.83  Aligned_cols=126  Identities=33%  Similarity=0.451  Sum_probs=109.8

Q ss_pred             CccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ...+++ |...+.||.|+||+||+ +++.++..||||.+.+.     ..+.+..|+.+|.++ +|||||+++++++.+++
T Consensus         6 ~~~~~~-y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel-~H~nIV~l~d~~~~~~~   83 (429)
T KOG0595|consen    6 MRVVGD-YELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKEL-KHPNIVRLLDCIEDDDF   83 (429)
T ss_pred             cccccc-ceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhc-CCcceeeEEEEEecCCe
Confidence            345666 99999999999998887 57788999999988765     345567899776665 89999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      +|||||||+ |||.+||+.      .+.+++..++.++.|+   |++||+++|||||||    |+..+
T Consensus        84 i~lVMEyC~gGDLs~yi~~------~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~  145 (429)
T KOG0595|consen   84 IYLVMEYCNGGDLSDYIRR------RGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTT  145 (429)
T ss_pred             EEEEEEeCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccC
Confidence            999999998 699999998      5679999999999999   999999999999999    55544

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.6e-21  Score=206.66  Aligned_cols=133  Identities=26%  Similarity=0.323  Sum_probs=118.1

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|...+.||+|+|+.+|. ++..+|+.||+|++.+.      ..+...+||++...+ +|||||+++++|++.+.+|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L-~HpnIV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSL-KHPNIVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhc-CCCcEEeeeeEeecCCceEEE
Confidence            4599999999999999887 56789999999988764      345678999766554 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|+|. |+|..++++      ++.++|.+++.++.||   |.|||+++|||||||    +++++-+.++-+++|+
T Consensus        97 LELC~~~sL~el~Kr------rk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLA  165 (592)
T KOG0575|consen   97 LELCHRGSLMELLKR------RKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLA  165 (592)
T ss_pred             EEecCCccHHHHHHh------cCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEeccccee
Confidence            99997 899999987      6789999999999999   889999999999999    6888888888888875

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.4e-21  Score=202.75  Aligned_cols=133  Identities=26%  Similarity=0.305  Sum_probs=118.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVm  480 (549)
                      |+..++||+|.||.||+ ++..+|+.||+|++....     ...+.|||.+|+++ +|||||+|.+.....  ..+|||+
T Consensus       119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l-~HpNIikL~eivt~~~~~siYlVF  197 (560)
T KOG0600|consen  119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRL-DHPNIIKLEEIVTSKLSGSIYLVF  197 (560)
T ss_pred             HHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhc-CCCcccceeeEEEecCCceEEEEE
Confidence            88899999999999999 588999999999888653     22467999776655 999999999987766  6899999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+-||.-++..     ..-.|++.++.++|.|+   |+|||.++|+|||||    |+|.+|.-++.+++|+|
T Consensus       198 eYMdhDL~GLl~~-----p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr  266 (560)
T KOG0600|consen  198 EYMDHDLSGLLSS-----PGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLAR  266 (560)
T ss_pred             ecccchhhhhhcC-----CCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEecccccee
Confidence            9999999999876     34579999999999999   899999999999999    99999999999999998

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=5.8e-21  Score=198.59  Aligned_cols=140  Identities=23%  Similarity=0.369  Sum_probs=123.4

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-eEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD-FVYL  478 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~~yL  478 (549)
                      +-++|.+.++||.|+||.||+ +.+.+|..||||++++..    ....+||+..|+++-.|||||+|.+++.+++ .+|+
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            345599999999999999998 578889999999999763    2245799988888845999999999999988 9999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhcC
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRLV  549 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd~  549 (549)
                      |||||.++|.++++.+     +..|++..++.||.||   |+|+|.+|+.|||+|    |+..+-..++.+++|+|-|
T Consensus        88 VfE~Md~NLYqLmK~R-----~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   88 VFEFMDCNLYQLMKDR-----NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             eHHhhhhhHHHHHhhc-----CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEeccccccccc
Confidence            9999999999999882     5679999999999999   889999999999999    7776878888899999965

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.80  E-value=1.5e-20  Score=191.73  Aligned_cols=136  Identities=24%  Similarity=0.302  Sum_probs=119.2

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ....+|++.+.||+|.||+|-++ ....|+.||||.|++..      .-.+.+||++| +.++||||+.+|++|+..+.+
T Consensus        50 nlkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIM-SsLNHPhII~IyEVFENkdKI  128 (668)
T KOG0611|consen   50 NLKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIM-SSLNHPHIIQIYEVFENKDKI  128 (668)
T ss_pred             chhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHH-hhcCCCceeehhhhhcCCceE
Confidence            44456999999999999997764 56789999999998752      22567899665 555999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .|||||.. |.|.+|+..      .+.+++..++.+++||   +.|||.++++|||||    |+|.|++.++..++|.
T Consensus       129 vivMEYaS~GeLYDYiSe------r~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLS  200 (668)
T KOG0611|consen  129 VIVMEYASGGELYDYISE------RGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLS  200 (668)
T ss_pred             EEEEEecCCccHHHHHHH------hccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchh
Confidence            99999997 799999988      6789999999999999   789999999999999    8999999999988875

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.80  E-value=4.2e-20  Score=187.70  Aligned_cols=135  Identities=27%  Similarity=0.232  Sum_probs=119.3

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ..+ |++.++||+|+||+|+. +.+.+++.+|+|.+++..      ......|..+|.+ ++||.||.++..|++.+.+|
T Consensus        24 ~~d-F~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~-v~hPFiv~l~ysFQt~~kLy  101 (357)
T KOG0598|consen   24 PDD-FEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSK-IKHPFIVKLIYSFQTEEKLY  101 (357)
T ss_pred             hhh-eeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHh-CCCCcEeeeEEecccCCeEE
Confidence            344 99999999999999987 566889999999999752      3345678766655 69999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+||++ |+|+..|++      .+.++++.++.++.+|   |.|||+++|||||||    |+|.+||..+-++.|.+
T Consensus       102 lVld~~~GGeLf~hL~~------eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k  173 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQR------EGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK  173 (357)
T ss_pred             EEEeccCCccHHHHHHh------cCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence            9999998 599999988      6789999999999999   889999999999999    99999999999888765

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=2.2e-20  Score=191.42  Aligned_cols=124  Identities=26%  Similarity=0.295  Sum_probs=106.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhh----------hhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHD----------VAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~----------~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      +.+.|.+.+.||+|+||.|-++ .+.+|+.||||++.+....          ...+|+++|+++ +|||||+++++|...
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL-~HP~IV~~~d~f~~~  248 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKL-SHPNIVRIKDFFEVP  248 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhc-CCCCEEEEeeeeecC
Confidence            5566999999999999987664 7789999999999875211          245899777666 999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      +..||||||+. |+|++++-.      ++.+.++.-..++.|+   +.|||++||+|||||    |+..+
T Consensus       249 ds~YmVlE~v~GGeLfd~vv~------nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~  312 (475)
T KOG0615|consen  249 DSSYMVLEYVEGGELFDKVVA------NKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSND  312 (475)
T ss_pred             CceEEEEEEecCccHHHHHHh------ccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccC
Confidence            99999999998 699999988      6678899999999999   889999999999999    66555

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.80  E-value=4.3e-20  Score=194.81  Aligned_cols=135  Identities=29%  Similarity=0.320  Sum_probs=117.7

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.+ |.+++.||.|+|++|++ ..+.++++||||++.+..      .....+|-..|..+-+||.||+||..|++...
T Consensus        70 k~~~D-F~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   70 KTPND-FKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             CChhh-cchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            34444 99999999999999998 478899999999988752      22345666666666699999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      +|+|+||++ |+|.++|++      .+.|++.+++.++.||   |+|||++||||||||    |+|.|||..+.+++
T Consensus       149 LYFvLe~A~nGdll~~i~K------~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFG  219 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKK------YGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFG  219 (604)
T ss_pred             eEEEEEecCCCcHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeecc
Confidence            999999996 899999998      6789999999999999   899999999999999    99999998887664

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.79  E-value=5.9e-20  Score=193.78  Aligned_cols=136  Identities=24%  Similarity=0.250  Sum_probs=118.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+.+ |++.++||+|+||.||++ .+.+|..+|+|+++++.      ....+.|-.+|.. .++|+||+||..|++.+.+
T Consensus       139 ~~~D-Fe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~-~ds~~vVKLyYsFQD~~~L  216 (550)
T KOG0605|consen  139 SLDD-FELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAE-VDSPWVVKLYYSFQDKEYL  216 (550)
T ss_pred             Cccc-chhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh-cCCCcEEEEEEEecCCCee
Confidence            4445 999999999999999995 66789999999999762      2234455544555 5999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||||++ ||+..+|..      .+.|++.+++.++.++   ++-||+.|+||||||    |+|.+||-++.+++|..
T Consensus       217 YLiMEylPGGD~mTLL~~------~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~  289 (550)
T KOG0605|consen  217 YLIMEYLPGGDMMTLLMR------KDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLST  289 (550)
T ss_pred             EEEEEecCCccHHHHHHh------cCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccc
Confidence            99999998 599999988      6789999999999998   789999999999999    99999999999998853

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.77  E-value=3.2e-20  Score=181.06  Aligned_cols=135  Identities=24%  Similarity=0.297  Sum_probs=120.9

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +|...++||+|.||.||+ ++..+|+.||||+|+...     .-.+.|||..|+.+ +|+||+.|+++|...+.+.||+|
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel-~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQEL-KHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHc-cCcchhhhhhhccCCCceEEEEE
Confidence            478889999999999888 588899999999888542     23578999777665 99999999999999999999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |++.+|...|+.     ....++..++..++.++   |+|||++.|+|||||    |+.++|.-+..+++|+|.
T Consensus        82 fm~tdLe~vIkd-----~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~  150 (318)
T KOG0659|consen   82 FMPTDLEVVIKD-----KNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARF  150 (318)
T ss_pred             eccccHHHHhcc-----cccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhc
Confidence            999999999987     35679999999999998   889999999999999    899999999999999985

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.77  E-value=1.1e-19  Score=181.99  Aligned_cols=139  Identities=27%  Similarity=0.344  Sum_probs=120.1

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHHhh-----hhHHHHHHHHhcCCCCCeeEEeeeccCc--c
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHD-----VAFKEIQNLIASDQHPNIVRWYGVENDK--D  474 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~-----~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~  474 (549)
                      ..|.. |+..+.|++|+||.||+ +++.+++.||+|+++.+...     ..+|||..|++. +|||||.+..+....  +
T Consensus        73 rsv~e-fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~-~H~NIV~vkEVVvG~~~d  150 (419)
T KOG0663|consen   73 RSVEE-FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKA-RHPNIVEVKEVVVGSNMD  150 (419)
T ss_pred             ccHHH-HHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhc-CCCCeeeeEEEEeccccc
Confidence            44555 99999999999999888 58899999999999865322     467999777766 899999999987654  4


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+|||||||+.||.++|...     ..++...++..++.|+   ++|||.+.|+|||||    |+...|--++.+++|+|
T Consensus       151 ~iy~VMe~~EhDLksl~d~m-----~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR  225 (419)
T KOG0663|consen  151 KIYIVMEYVEHDLKSLMETM-----KQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAR  225 (419)
T ss_pred             eeeeeHHHHHhhHHHHHHhc-----cCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhh
Confidence            69999999999999999872     3579999999999999   889999999999999    88999999999999998


Q ss_pred             c
Q 042769          548 L  548 (549)
Q Consensus       548 d  548 (549)
                      -
T Consensus       226 ~  226 (419)
T KOG0663|consen  226 E  226 (419)
T ss_pred             h
Confidence            4

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=3.5e-19  Score=188.15  Aligned_cols=137  Identities=27%  Similarity=0.371  Sum_probs=117.7

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      .+++ |.+.+.||+|+||+|+.+ +..+++.||+|++.++        ..+...+|+.++..+..||||+++++++....
T Consensus        15 ~~g~-y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   15 SIGK-YELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             ccCc-eeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3445 999999999999998884 7888999999977664        12345589977766644999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLLLSL  545 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l~~L  545 (549)
                      .+|+|||||. |+|++++..      .+++.|..++.++.|+   ++|||+++|+|||||    |++.+ ++.++.++++
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~------~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~  167 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVN------KGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGL  167 (370)
T ss_pred             eEEEEEEecCCccHHHHHHH------cCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEecccc
Confidence            9999999998 599999988      5789999999999999   899999999999999    88988 8888887776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       168 s~  169 (370)
T KOG0583|consen  168 SA  169 (370)
T ss_pred             cc
Confidence            53

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.76  E-value=7.3e-19  Score=173.85  Aligned_cols=136  Identities=25%  Similarity=0.313  Sum_probs=118.1

Q ss_pred             cceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+.+ |+..+.||.|+||.|.+ +.+.+|..+|+|++.+..      .+....|...|.+. .||++++|++.|.+.+.+
T Consensus        42 ~l~d-fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v-~~PFlv~l~~t~~d~~~l  119 (355)
T KOG0616|consen   42 SLQD-FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAV-SHPFLVKLYGTFKDNSNL  119 (355)
T ss_pred             chhh-hhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhc-cCceeEEEEEeeccCCeE
Confidence            3444 99999999999999988 688889999999888652      33455677555554 899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||||.+ |.|++++++      .+++++..++.++.||   |+|||+++|++||||    |+|++||-++.+++.++
T Consensus       120 ymvmeyv~GGElFS~Lrk------~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK  192 (355)
T KOG0616|consen  120 YMVMEYVPGGELFSYLRK------SGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAK  192 (355)
T ss_pred             EEEEeccCCccHHHHHHh------cCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceE
Confidence            99999998 599999998      6789999999999999   889999999999999    99999999988776543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.75  E-value=5.7e-19  Score=179.63  Aligned_cols=130  Identities=23%  Similarity=0.283  Sum_probs=115.6

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHH----HHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-eEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLV----RALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-FVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~----~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~~yLVmE~  482 (549)
                      .+..+.||+|+.|+|++ .++.+++.+|+|.+.    .+...+..+|++++.+. +||+||.+||+|..+. .++|+|||
T Consensus        81 le~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~-~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   81 LERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSC-QSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             hhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhC-CCCCeeeEeEEEEeCCceEEeehhh
Confidence            66678999999999988 588999999999984    34566788999888777 9999999999999999 59999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |+ |+|.+++..      .+.++|.....++.++   |.||| +++|||||||    |++++|..++-+++-
T Consensus       160 MDgGSLd~~~k~------~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGV  225 (364)
T KOG0581|consen  160 MDGGSLDDILKR------VGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGV  225 (364)
T ss_pred             cCCCCHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccc
Confidence            98 699999987      5779999999999999   88999 5999999999    999999999887763

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.73  E-value=4e-19  Score=176.05  Aligned_cols=133  Identities=21%  Similarity=0.286  Sum_probs=114.6

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+...++|+|+||.|++ +++.+|+.||||++..+.     .+-+.|||..| +.++|||+|.|+++|.....++||+||
T Consensus         4 YE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmL-KqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    4 YEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRML-KQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHH-HhcccchHHHHHHHHHhcceeEEEeee
Confidence            78888999999998888 488999999999998642     33578999555 455999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+-++.+.|..+     ..+++...+..++.|+   +.|+|++++||||||    |+..+|-.++-+++.+|
T Consensus        83 ~dhTvL~eLe~~-----p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR  149 (396)
T KOG0593|consen   83 CDHTVLHELERY-----PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFAR  149 (396)
T ss_pred             cchHHHHHHHhc-----cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhH
Confidence            998887777773     3568899999999999   789999999999999    88999988877777666

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.6e-18  Score=182.57  Aligned_cols=138  Identities=24%  Similarity=0.259  Sum_probs=115.1

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-eEEEEec
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKD-FVYLSLE  481 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~~yLVmE  481 (549)
                      ++.|.....||+|+||.||+....+|+.||||++....   ...+..|+..|.++ +|||+|+|+|||.+.+ +.+||+|
T Consensus        74 T~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l-~H~Nlv~LlGyC~e~~~~~~LVYE  152 (361)
T KOG1187|consen   74 TNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRL-RHPNLVKLLGYCLEGGEHRLLVYE  152 (361)
T ss_pred             HhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcC-CCcCcccEEEEEecCCceEEEEEE
Confidence            35588888999999999877666777999999887643   34588899666555 8999999999999988 5999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce---eEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV---KVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~---~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||. |+|.++|.....    ..+++....+|+.++   |+|||..   .|||||||    |+|++..|++.++.|++.
T Consensus       153 ym~nGsL~d~L~~~~~----~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~  226 (361)
T KOG1187|consen  153 YMPNGSLEDHLHGKKG----EPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKL  226 (361)
T ss_pred             ccCCCCHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCccc
Confidence            996 899999987321    178888888999888   9999964   49999999    999999999999988753

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=6.4e-19  Score=173.14  Aligned_cols=140  Identities=23%  Similarity=0.356  Sum_probs=116.3

Q ss_pred             cceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEee-eccCcce-
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYG-VENDKDF-  475 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g-~~~~~~~-  475 (549)
                      ...+ |++.++||+|+||+||+ ..+.+|..+|.|.+.-.     ..+....|+..|.. ++|||||++++ .+..+.. 
T Consensus        17 ~l~~-y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQ-L~HpNIVqYy~~~f~~~~ev   94 (375)
T KOG0591|consen   17 TLAD-YQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQ-LNHPNIVQYYAHSFIEDNEV   94 (375)
T ss_pred             cHHH-HHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHh-cCCchHHHHHHHhhhccchh
Confidence            3444 99999999999999998 58899999999988732     34566789965554 59999999998 5555555 


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc--ee--EEEeecc----ccccCCCCchhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS--VK--VIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~--~~--IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      ++|+||||. |||.+.|+..+.  ....++|..++.++.|+   |.+||.  .+  |+|||||    +++.+|..++=++
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~--qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDf  172 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKK--QKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDF  172 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHh--ccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccc
Confidence            999999997 899999987662  45679999999999999   889998  55  9999999    8999998888888


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      +|.|
T Consensus       173 GL~r  176 (375)
T KOG0591|consen  173 GLGR  176 (375)
T ss_pred             hhHh
Confidence            8766

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=3.2e-18  Score=178.20  Aligned_cols=135  Identities=25%  Similarity=0.324  Sum_probs=109.1

Q ss_pred             CCccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----------------hhhhHHHHHHHHhcCCCCC
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----------------HDVAFKEIQNLIASDQHPN  462 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----------------~~~~~~Ei~~L~~~l~HpN  462 (549)
                      ....+.. |++.+.||+|.||.|.+ .+..+++.||||++.+..                 .+...+||.+|.+ +.|||
T Consensus        92 ~~k~lNq-y~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKk-l~H~n  169 (576)
T KOG0585|consen   92 DRKQLNQ-YELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKK-LHHPN  169 (576)
T ss_pred             cceehhh-eehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHh-cCCcC
Confidence            3444555 99999999999999877 477889999999887641                 1256789966655 59999


Q ss_pred             eeEEeeeccCc--ceEEEEecccc-cchhhhhhhcccCCcccc-cCchhhhHHhhhe---eecccceeEEEeecc----c
Q 042769          463 IVRWYGVENDK--DFVYLSLERCT-CSLDDLIQTYSDSSCNSV-FGEDQATRAMIEY---KLRLDSVKVIIRDLS----L  531 (549)
Q Consensus       463 IVrl~g~~~~~--~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~-l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----L  531 (549)
                      ||+|+++..+.  +.+|||+|||. |.+...- .      .+. +++.+++.|++.+   |+|||.+||||||||    |
T Consensus       170 VV~LiEvLDDP~s~~~YlVley~s~G~v~w~p-~------d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLL  242 (576)
T KOG0585|consen  170 VVKLIEVLDDPESDKLYLVLEYCSKGEVKWCP-P------DKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLL  242 (576)
T ss_pred             eeEEEEeecCcccCceEEEEEeccCCccccCC-C------CcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheE
Confidence            99999998765  46999999997 6664322 1      334 8999999999999   999999999999999    8


Q ss_pred             cccCCCCchhhhh
Q 042769          532 WKADGHPSPLLLS  544 (549)
Q Consensus       532 l~~~G~p~~~l~~  544 (549)
                      +.++|+.++.+++
T Consensus       243 l~~~g~VKIsDFG  255 (576)
T KOG0585|consen  243 LSSDGTVKISDFG  255 (576)
T ss_pred             EcCCCcEEeeccc
Confidence            9999999887765

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.1e-18  Score=185.50  Aligned_cols=137  Identities=22%  Similarity=0.291  Sum_probs=120.3

Q ss_pred             CccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      ...+|- |++++.||+|+-|.|.+ ++..||+.+|||++.+.      ....+.+|| .+++++.||||+++|++++++.
T Consensus         8 ~~tiGp-wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEI-viMkLi~HpnVl~LydVwe~~~   85 (786)
T KOG0588|consen    8 KNTIGP-WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREI-VIMKLIEHPNVLRLYDVWENKQ   85 (786)
T ss_pred             cccccc-eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhh-HHHHHhcCCCeeeeeeeeccCc
Confidence            345666 99999999999999777 68899999999999865      123466888 6778889999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++|+|+||+. |.|+++|..      .+++++.++.+++.||   +.|||..+|+|||||    |+|..++.++..++++
T Consensus        86 ~lylvlEyv~gGELFdylv~------kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMA  159 (786)
T KOG0588|consen   86 HLYLVLEYVPGGELFDYLVR------KGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMA  159 (786)
T ss_pred             eEEEEEEecCCchhHHHHHh------hCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeecccee
Confidence            9999999997 699999988      6789999999999999   789999999999999    8888888887777654

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=3.2e-18  Score=181.10  Aligned_cols=135  Identities=26%  Similarity=0.302  Sum_probs=116.7

Q ss_pred             eeecccccccCCceEEEeeeecCc-hhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGR-PVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~-~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.+.+.||+|.||.|+. +.+++. .||+|.++..  ..+.+.+|+++|+++ +|+|||+|+++|..++.+|||||||. 
T Consensus       208 l~l~~~LG~G~FG~V~~-g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L-~H~~lV~l~gV~~~~~piyIVtE~m~~  285 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWL-GKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKL-RHEKLVKLYGVCTKQEPIYIVTEYMPK  285 (468)
T ss_pred             HHHHHHhcCCccceEEE-EEEcCCCcccceEEeccccChhHHHHHHHHHHhC-cccCeEEEEEEEecCCceEEEEEeccc
Confidence            56678999999998654 556655 9999988863  234677899877666 99999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhcC
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRLV  549 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd~  549 (549)
                      |+|.+||+..    ....+...+.+.++.||   |+||+++++|||||-    |+++++..++.+++|+|.|
T Consensus       286 GsLl~yLr~~----~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~  353 (468)
T KOG0197|consen  286 GSLLDYLRTR----EGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLI  353 (468)
T ss_pred             CcHHHHhhhc----CCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEccccccccc
Confidence            9999999972    35678899999999999   999999999999998    9999999999999999853

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.70  E-value=1.3e-18  Score=183.80  Aligned_cols=133  Identities=21%  Similarity=0.256  Sum_probs=118.8

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHHhh-----hhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHD-----VAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~-----~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |.+.+.||+|+||.||+ +.+.+.+.||+|.+.+....     ...+|++++.++ +|||||.+++.|+...++++|.||
T Consensus         4 yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~l-kHpniv~m~esfEt~~~~~vVte~   82 (808)
T KOG0597|consen    4 YHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSL-KHPNIVEMLESFETSAHLWVVTEY   82 (808)
T ss_pred             hhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhc-CCcchhhHHHhhcccceEEEEehh
Confidence            88889999999999888 57788999999988875332     477888666554 999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |.|+|..+|..      .+.++|+.++.+..++   |.|||+++|+|||+|    |++..|..+.-.+.|+|-
T Consensus        83 a~g~L~~il~~------d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~  149 (808)
T KOG0597|consen   83 AVGDLFTILEQ------DGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARA  149 (808)
T ss_pred             hhhhHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhh
Confidence            99999999988      7789999999999998   889999999999999    899999999888888773

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.6e-18  Score=167.01  Aligned_cols=135  Identities=26%  Similarity=0.288  Sum_probs=113.6

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      -.+.+ |++++.||+|.||.||. +.+.++-.||+|++.++.      ..+..+|++ +.+-++||||.++|++|.+...
T Consensus        19 ~~l~d-feigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiE-Iqs~L~hpnilrlY~~fhd~~r   96 (281)
T KOG0580|consen   19 WTLDD-FEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIE-IQSHLRHPNILRLYGYFHDSKR   96 (281)
T ss_pred             cchhh-ccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeE-eecccCCccHHhhhhheeccce
Confidence            34555 99999999999999998 467788899999877652      335668884 4667799999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      +||++||.. |+|+..|+..+    ..++++..+..++.|+   |.|+|.++|||||||    |+..+|.-++..+
T Consensus        97 iyLilEya~~gel~k~L~~~~----~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdf  168 (281)
T KOG0580|consen   97 IYLILEYAPRGELYKDLQEGR----MKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADF  168 (281)
T ss_pred             eEEEEEecCCchHHHHHHhcc----cccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCC
Confidence            999999996 89999998633    5679999999999999   899999999999999    7888887666544

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=8.2e-18  Score=186.09  Aligned_cols=140  Identities=25%  Similarity=0.256  Sum_probs=118.1

Q ss_pred             eeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+..+.||+|+||+||.+..      .+.+.||||.++..    ..+++.||++ |++.++|||||+|+|+|..++.+||
T Consensus       488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REae-Lla~l~H~nIVrLlGVC~~~~P~~M  566 (774)
T KOG1026|consen  488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAE-LLAELQHPNIVRLLGVCREGDPLCM  566 (774)
T ss_pred             eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHH-HHHhccCCCeEEEEEEEccCCeeEE
Confidence            55678999999999887422      23578999999964    3446778884 5566699999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCc--------ccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSC--------NSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~--------~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      |+|||. |||.+||+.+.+...        ...++..+.+.++.||   |+||-++.+|||||-    |+.++-..++.+
T Consensus       567 vFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsD  646 (774)
T KOG1026|consen  567 VFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISD  646 (774)
T ss_pred             EEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecc
Confidence            999997 999999998654321        2348888999999999   999999999999998    999999999999


Q ss_pred             hhhhhcC
Q 042769          543 LSLMRLV  549 (549)
Q Consensus       543 ~~Lmrd~  549 (549)
                      ++|+|||
T Consensus       647 fGLsRdi  653 (774)
T KOG1026|consen  647 FGLSRDI  653 (774)
T ss_pred             cccchhh
Confidence            9999997

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.70  E-value=5.6e-18  Score=177.96  Aligned_cols=133  Identities=27%  Similarity=0.301  Sum_probs=112.3

Q ss_pred             eeecccccccCCceEEEeeeecCch-hHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-eEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRP-VAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD-FVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~-VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~~yLVmE  481 (549)
                      ....+.||+|+||+| +++.+.|+. ||||++....     ...+.+|+..|.+ ++|||||+++|+|.... ..+||||
T Consensus        43 l~~~~~iG~G~~g~V-~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~-l~HpNIV~f~G~~~~~~~~~~iVtE  120 (362)
T KOG0192|consen   43 LPIEEVLGSGSFGTV-YKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSR-LRHPNIVQFYGACTSPPGSLCIVTE  120 (362)
T ss_pred             hhhhhhcccCCceeE-EEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCceEEEEE
Confidence            444567999999985 478888888 9999888643     3467889966655 59999999999999888 7999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee-EEEeecc----ccccCC-CCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK-VIIRDLS----LWKADG-HPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~-IIHRDLK----Ll~~~G-~p~~~l~~Lmr  547 (549)
                      |++ |+|.++++..    ....++...+..++.||   |.|||+++ |||||||    |++.++ +.++.+++|.|
T Consensus       121 y~~~GsL~~~l~~~----~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr  192 (362)
T KOG0192|consen  121 YMPGGSLSVLLHKK----RKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSR  192 (362)
T ss_pred             eCCCCcHHHHHhhc----ccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccce
Confidence            997 7999999873    24679999999999999   88999999 9999999    889998 88888888765

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.70  E-value=3.7e-18  Score=184.72  Aligned_cols=137  Identities=23%  Similarity=0.267  Sum_probs=115.5

Q ss_pred             cceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+.+ |.+.++||+|+||+|++ ..+.+++.+|||.+++.      ..+....|.+++...-+||.+++|+.+|++.+++
T Consensus       366 ~l~~-F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  366 TLDD-FRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             cccc-eEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            3444 99999999999999988 46788999999988864      2345556765554444899999999999999999


Q ss_pred             EEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          477 YLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       477 yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+||||++| ++..+++       .+.+++..++.|+..+   |+|||+++||+||||    |+|..||.++.+++|.+.
T Consensus       445 ~fvmey~~Ggdm~~~~~-------~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe  517 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIH-------TDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKE  517 (694)
T ss_pred             EEEEEecCCCcEEEEEe-------cccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccc
Confidence            999999985 8655544       3679999999999998   899999999999999    899999999999988653

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.69  E-value=6.9e-18  Score=177.62  Aligned_cols=132  Identities=22%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||+||++ ...+++.||||++.+.      ....+.+|+..+.. ++||||+++++++.+...+|||||
T Consensus         3 y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-~~~~~iv~~~~~~~~~~~~~lv~E   81 (363)
T cd05628           3 FESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVE-ADSLWVVKMFYSFQDKLNLYLIME   81 (363)
T ss_pred             ceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHh-CCCCCcceEEEEEecCCeEEEEEc
Confidence            888999999999999884 6678999999987643      12345567755555 499999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|++++..+++++
T Consensus        82 ~~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~  149 (363)
T cd05628          82 FLPGGDMMTLLMK------KDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCT  149 (363)
T ss_pred             CCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcc
Confidence            997 599999987      4578999999999999   889999999999999    89999998888887765

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.69  E-value=3.8e-18  Score=173.06  Aligned_cols=137  Identities=23%  Similarity=0.267  Sum_probs=117.3

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHHh-----hhhHHHHHHHHhcCCCCC-eeEEeeeccCcc------e
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALH-----DVAFKEIQNLIASDQHPN-IVRWYGVENDKD------F  475 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~-----~~~~~Ei~~L~~~l~HpN-IVrl~g~~~~~~------~  475 (549)
                      |+..++||+|+||+||. +.+.+|+.||+|+++.+..     ..+.+|+..| +.++|+| ||+|++++....      .
T Consensus        13 ~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisll-k~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   13 YEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLL-KRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHH-HHhCCCcceEEEEeeeeecccccccce
Confidence            77778899999999888 5788999999998875432     2468999555 5559999 999999999877      7


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ++||+||+.-+|..++.......  ..++...++.+++|+   |+|||+++|+|||||    |++++|.-++.+++|+|.
T Consensus        92 l~lvfe~~d~DL~~ymd~~~~~~--~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra  169 (323)
T KOG0594|consen   92 LYLVFEFLDRDLKKYMDSLPKKP--QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARA  169 (323)
T ss_pred             EEEEEEeecccHHHHHHhccccc--cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHH
Confidence            99999999999999999854221  457778899999999   899999999999999    899999999999999884

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.69  E-value=4e-18  Score=169.92  Aligned_cols=128  Identities=23%  Similarity=0.335  Sum_probs=111.6

Q ss_pred             eeee-cccccccCCceEEE-eeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVS-NTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~-~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++ .+.||+|+|+.|-- ..+.+|.++|||+|.+.   ...+.++|++.+.....|+||++|+++|+++..+|||||-
T Consensus        78 ~YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEK  157 (463)
T KOG0607|consen   78 MYKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEK  157 (463)
T ss_pred             HHHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEec
Confidence            3665 57999999999765 48899999999999874   3557889999988888999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      |. |.|.+.|++      ...+++..+.++...|   |.|||.+||.|||||    |.-...+.+|+
T Consensus       158 m~GGplLshI~~------~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPv  218 (463)
T KOG0607|consen  158 MRGGPLLSHIQK------RKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPV  218 (463)
T ss_pred             ccCchHHHHHHH------hhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCce
Confidence            98 599999988      6689999999999999   999999999999999    55555555655

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=1.1e-17  Score=175.59  Aligned_cols=133  Identities=23%  Similarity=0.279  Sum_probs=112.3

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||+ .+..+|+.||||++....      ...+.+|+..|..+ +||||+++++++.+.+..||||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l-~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEA-DNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCCcceEEEEEcCCeEEEEE
Confidence            388899999999999888 466789999999876431      22355788665554 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 E~~~~g~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  149 (364)
T cd05599          81 EYLPGGDMMTLLMK------KDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCT  149 (364)
T ss_pred             CCCCCcHHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccce
Confidence            9997 599999977      4568999999999999   889999999999999    88999988887776653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=1.4e-17  Score=176.08  Aligned_cols=132  Identities=24%  Similarity=0.272  Sum_probs=111.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.+.+.||+|+||.||+ .+..+++.||||++.+.      ....+.+|+..+.. ++||||+++++++.+..++|||||
T Consensus         3 y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           3 FHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAE-SDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             ceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCeeEEEEe
Confidence            88889999999999988 46678999999976542      12345678865544 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..+..+++|.+
T Consensus        82 ~~~gg~L~~~l~~------~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~  149 (377)
T cd05629          82 FLPGGDLMTMLIK------YDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLST  149 (377)
T ss_pred             CCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccc
Confidence            997 599999976      4568889999999998   889999999999999    88999988887777653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.68  E-value=2.1e-17  Score=179.31  Aligned_cols=133  Identities=24%  Similarity=0.333  Sum_probs=110.5

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc------eEE
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD------FVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~------~~y  477 (549)
                      +...+.||+|+||.||. +++.+|+.||||.+++.    ..+...+|++.|.++ +|||||+++++-++..      ...
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKL-nh~NIVk~f~iee~~~~~~~~~~~v   93 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKL-NHPNIVKLFDIEETKFLGLVTRLPV   93 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHc-CchhhhhhcccCCccccCcccccce
Confidence            67778999999999988 57899999999999874    355778999888776 7999999999977654      578


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc---ccccCCCCchhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS---LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK---Ll~~~G~p~~~l~~L  545 (549)
                      ++||||. |||...|++   ..+..++++..++.++..+   |.|||++||+|||||   .+...|.|.-.+.||
T Consensus        94 lvmEyC~gGsL~~~L~~---PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKL  165 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNS---PENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKL  165 (732)
T ss_pred             EEEeecCCCcHHHHhcC---cccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEee
Confidence            9999998 699999987   3345679999999999888   899999999999999   555566655555443

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.67  E-value=1.6e-17  Score=175.86  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=112.3

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|+..++||+|+||.||+ ....+++.||+|++.+..      ...+.+|+..+.. ++|||||++++++.+.+.+|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~-~~h~~iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAE-ADNEWVVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh-CCCCcCCeEEEEEEeCCEEEEEE
Confidence            388899999999999888 466788999999776431      2345678755544 59999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+.|.+
T Consensus        81 E~~~gg~L~~~l~~------~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~  149 (382)
T cd05625          81 DYIPGGDMMSLLIR------MGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCT  149 (382)
T ss_pred             eCCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCc
Confidence            9997 599999977      4568889999999998   889999999999999    88999998888877754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2e-17  Score=171.27  Aligned_cols=136  Identities=24%  Similarity=0.202  Sum_probs=117.4

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      -.+.|++.++||.|..++||. ..+.+++.||||++..+.    .+.+.+|++. +++++||||++++.+|..+..+|+|
T Consensus        24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~-msl~~HPNIv~~~~sFvv~~~LWvV  102 (516)
T KOG0582|consen   24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQT-MSLIDHPNIVTYHCSFVVDSELWVV  102 (516)
T ss_pred             CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHH-hhhcCCCCcceEEEEEEecceeEEe
Confidence            345599999999999998888 477889999999998653    2456788865 4677999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |.||. |++.++++..-    ...++|..+..+++++   |.|||++|.||||||    |++.+|..++..++-
T Consensus       103 mpfMa~GS~ldIik~~~----~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgv  172 (516)
T KOG0582|consen  103 MPFMAGGSLLDIIKTYY----PDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGV  172 (516)
T ss_pred             ehhhcCCcHHHHHHHHc----cccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCcee
Confidence            99998 79999998744    4569999999999999   889999999999999    999999988776653

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.67  E-value=2.2e-17  Score=175.02  Aligned_cols=132  Identities=23%  Similarity=0.222  Sum_probs=111.4

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|+..+.||+|+||+||+ ....+++.||||++.+.      ....+.+|+..+.. ++||||+++++++.+.+.+|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~-l~h~~iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-cCCCCeeeeEEEEecCCEEEEEE
Confidence            388889999999999988 46678999999987643      22345678865544 59999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..++|.
T Consensus        81 E~~~gg~L~~~l~~------~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~  148 (381)
T cd05626          81 DYIPGGDMMSLLIR------MEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLC  148 (381)
T ss_pred             ecCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence            9997 599999977      4568888999999998   899999999999999    8899998888777764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.67  E-value=2.2e-17  Score=171.53  Aligned_cols=137  Identities=25%  Similarity=0.234  Sum_probs=114.2

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.+ |++.+.||+|+||.||.+ ...+++.||+|++.+.      ..+.+.+|+..+..+ +||||+++++++...+.
T Consensus        15 ~~~~~-y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~   92 (329)
T PTZ00263         15 WKLSD-FEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMEL-SHPFIVNMMCSFQDENR   92 (329)
T ss_pred             CCchh-eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEcCCE
Confidence            34445 999999999999998884 5667899999976543      223466788666554 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|++||||. |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++.++++.+
T Consensus        93 ~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  166 (329)
T PTZ00263         93 VYFLLEFVVGGELFTHLRK------AGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAK  166 (329)
T ss_pred             EEEEEcCCCCChHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCce
Confidence            999999997 599999987      4568889999999998   899999999999999    88999988887776654

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=5.3e-17  Score=164.74  Aligned_cols=136  Identities=24%  Similarity=0.325  Sum_probs=115.5

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----c
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-----K  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----~  473 (549)
                      +...|...+.||+|+||.|+. .+..+|+.||||++...     ..++..||+..|.. ++|+||+.+++.+..     -
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~-~~HeNIi~l~di~~p~~~~~f   98 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRH-LRHENIIGLLDIFRPPSRDKF   98 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHH-hcCCCcceEEeeccccccccc
Confidence            344466678999999998766 47889999999998843     35578899965544 589999999999875     3


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..+|+|+|+|+.+|.+.|+.      +..++++.+..++.|+   |.|+|+.+|+|||||    |++.+-.-++..++|+
T Consensus        99 ~DvYiV~elMetDL~~iik~------~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLA  172 (359)
T KOG0660|consen   99 NDVYLVFELMETDLHQIIKS------QQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLA  172 (359)
T ss_pred             ceeEEehhHHhhHHHHHHHc------CccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccce
Confidence            35999999999999999988      5569999999999999   889999999999999    8888888888888888


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      |
T Consensus       173 R  173 (359)
T KOG0660|consen  173 R  173 (359)
T ss_pred             e
Confidence            7

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.67  E-value=2.7e-17  Score=173.74  Aligned_cols=131  Identities=24%  Similarity=0.264  Sum_probs=111.1

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||+ ++..+++.||||++.+.      ......+|+..|.. ++||||+++++.+..++.+|+|||
T Consensus         3 y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           3 FVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAE-ADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             ceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCEEEEEEe
Confidence            88999999999999988 46778999999977643      12345678865554 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..++++
T Consensus        82 ~~~~g~L~~~i~~------~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a  148 (376)
T cd05598          82 YIPGGDMMSLLIR------LGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC  148 (376)
T ss_pred             CCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence            997 599999977      4568889999999998   899999999999999    8899998887777664

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.66  E-value=1.9e-17  Score=170.20  Aligned_cols=133  Identities=24%  Similarity=0.215  Sum_probs=114.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|.-|+||++ ...++..+|+|++.++.      ..++..|-++| +.++||.++.||..|+.+.+.|++||
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL-~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREIL-SLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHH-HhcCCCccchhhheeeccceeEEEEe
Confidence            888999999999999995 45567999999888752      22344455444 55699999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||. |+|..+++++.    .+.+++..++.|+.++   |+|||..|||.||||    |+.++||.-+.+++|.
T Consensus       158 yCpGGdL~~LrqkQp----~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS  226 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQP----GKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLS  226 (459)
T ss_pred             cCCCccHHHHHhhCC----CCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeecccc
Confidence            998 59999998844    6789999999999999   889999999999999    9999999888887764

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.66  E-value=3.5e-17  Score=167.79  Aligned_cols=133  Identities=25%  Similarity=0.329  Sum_probs=112.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--eEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKD--FVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--~~yLVmE~  482 (549)
                      +...+.||+|+||.||+. ...+|+.+|||.+....   .+...+|+..|..+ +|||||+++|......  .++|.|||
T Consensus        19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l-~~p~IV~~~G~~~~~~~~~~~i~mEy   97 (313)
T KOG0198|consen   19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRL-NHPNIVQYYGSSSSRENDEYNIFMEY   97 (313)
T ss_pred             hhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhC-CCCCEEeeCCccccccCeeeEeeeec
Confidence            777889999999999884 66679999999877653   34477899777666 7999999999865555  69999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~~~l~~Lmr  547 (549)
                      +. |+|.+++.+++     +.+++..++++..|+   |.|||++||||||||    |++. +|.-++.++++++
T Consensus        98 ~~~GsL~~~~~~~g-----~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~  166 (313)
T KOG0198|consen   98 APGGSLSDLIKRYG-----GKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAK  166 (313)
T ss_pred             cCCCcHHHHHHHcC-----CCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccc
Confidence            97 69999999833     269999999999999   889999999999999    8888 7888888877654

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.66  E-value=8.6e-18  Score=155.70  Aligned_cols=133  Identities=26%  Similarity=0.258  Sum_probs=116.7

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |...++||+|.||+|++ ++..+++.||+|+++...     ...+.+|+..|.. ++|.||||++++...+..+-+|+||
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllke-lkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHH-hhhcceeehhhhhccCceeEEeHHH
Confidence            55668999999999988 578889999999887542     2368899965555 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |..+|..|...     .++.+....++.++.|+   |.|+|+++++|||||    |++.||.-+...++|+|
T Consensus        83 cdqdlkkyfds-----lng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglar  149 (292)
T KOG0662|consen   83 CDQDLKKYFDS-----LNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLAR  149 (292)
T ss_pred             hhHHHHHHHHh-----cCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhh
Confidence            99999999876     35778899999999999   889999999999999    89999999999999987

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=3.3e-17  Score=170.05  Aligned_cols=132  Identities=27%  Similarity=0.343  Sum_probs=112.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.+ ...+++.||||++.+..      ...+.+|+..+..+ +||||+++++++...+..|||||
T Consensus         3 y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           3 FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTT-KSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             cEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhC-CCCCCccEEEEEEcCCEEEEEEe
Confidence            889999999999998884 55678999999776532      23456788665555 89999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+++++
T Consensus        82 ~~~g~~L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~  149 (333)
T cd05600          82 YVPGGDFRTLLNN------LGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSK  149 (333)
T ss_pred             CCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCc
Confidence            997 599999976      4568899999999998   889999999999999    88999998888877765

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.65  E-value=5.4e-17  Score=173.84  Aligned_cols=132  Identities=27%  Similarity=0.336  Sum_probs=108.3

Q ss_pred             ecccccccCCceEEEeeeec--C---chhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          411 SNTEIAKGSNGTVVYEGIYE--G---RPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~~~~~--g---~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.++||+|+||.|+......  +   ..||||....      .....+.+|.+.|+. ++|||||++||++.....++||
T Consensus       161 l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~-l~H~NVVr~yGVa~~~~Pl~iv  239 (474)
T KOG0194|consen  161 LGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQ-LNHPNVVRFYGVAVLEEPLMLV  239 (474)
T ss_pred             ccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEcCCCccEEE
Confidence            34799999999988743222  1   2389997763      234456788866655 6999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||+|+ |+|.++|++.+     ..++..+..+++.++   |+|||++++|||||-    |+..++.+++.+++|.|.
T Consensus       240 mEl~~gGsL~~~L~k~~-----~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~  311 (474)
T KOG0194|consen  240 MELCNGGSLDDYLKKNK-----KSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRA  311 (474)
T ss_pred             EEecCCCcHHHHHHhCC-----CCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccC
Confidence            99998 59999999832     358888999999988   999999999999998    999999999999998763

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.65  E-value=4.1e-17  Score=165.79  Aligned_cols=133  Identities=20%  Similarity=0.228  Sum_probs=111.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.++||+|+||.||.+ ...+++.||+|.+....    .....+|+..+.. ++||||+++++++...+..|+||||+
T Consensus         7 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~   85 (288)
T cd07871           7 YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKN-LKHANIVTLHDIIHTERCLTLVFEYL   85 (288)
T ss_pred             ceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHh-CCCCCEeeEEEEEcCCCeEEEEEeCC
Confidence            899999999999998884 56788999999876431    2245688876655 49999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|+|.+++..+     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+++.+
T Consensus        86 ~~~l~~~l~~~-----~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~  151 (288)
T cd07871          86 DSDLKQYLDNC-----GNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLAR  151 (288)
T ss_pred             CcCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCccee
Confidence            99999998762     2347888889999998   899999999999999    88999988877776654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.65  E-value=8.2e-17  Score=167.22  Aligned_cols=142  Identities=22%  Similarity=0.210  Sum_probs=110.5

Q ss_pred             eeeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-ce
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-DF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-~~  475 (549)
                      ++|++.++||+|+||.||.+.      ..+++.||||++...    ....+.+|+..+..+.+||||++++++|... ..
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~   86 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGP   86 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCc
Confidence            348899999999999988742      234678999998642    2345678997777776999999999987754 46


Q ss_pred             EEEEecccc-cchhhhhhhcccCC--------------------------------------------------------
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSS--------------------------------------------------------  498 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~--------------------------------------------------------  498 (549)
                      ++++||||+ |+|.+++.......                                                        
T Consensus        87 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T cd05102          87 LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDL  166 (338)
T ss_pred             eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcccc
Confidence            899999997 69999997632100                                                        


Q ss_pred             cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          499 CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       499 ~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ....+++..+..++.|+   |+|||+++|+|||||    |++.++..++..+++.+.
T Consensus       167 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~  223 (338)
T cd05102         167 WKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARD  223 (338)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccc
Confidence            01246777788889998   899999999999999    888899888888777653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.65  E-value=4.4e-17  Score=168.65  Aligned_cols=128  Identities=24%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||++ +..+|+.||+|++.+.      ......+|+..+.. ++||||+++++++...+..|+|||||. 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN-TRHPFLTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-CCCCCCCCEEEEEEcCCEEEEEEeCCCC
Confidence            46999999999884 6678999999977643      12345678766555 499999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        80 ~~L~~~l~~------~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~  143 (323)
T cd05571          80 GELFFHLSR------ERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCK  143 (323)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCc
Confidence            599999877      4568999999999999   899999999999999    88999998888887765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.65  E-value=5.3e-17  Score=170.59  Aligned_cols=132  Identities=23%  Similarity=0.213  Sum_probs=111.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||.||.+ ...+++.||+|++...      ....+.+|+..+.. ++||||+++++.+.+.+.+|||||
T Consensus         3 f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           3 FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVE-ADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             ceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCEEEEEEe
Confidence            888899999999998884 6678999999977542      22345567765555 499999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+..+..+++++
T Consensus        82 ~~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~  149 (360)
T cd05627          82 FLPGGDMMTLLMK------KDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCT  149 (360)
T ss_pred             CCCCccHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCc
Confidence            998 599999977      4568999999999998   889999999999999    88999998888777654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.65  E-value=7e-17  Score=173.10  Aligned_cols=136  Identities=23%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CCccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +...++. |.+.+.||+|.|++|.+ .+..++..||||.+.+..     .+...+|+++|+.+ +|||||+++.+.+...
T Consensus        51 ~~~~vg~-y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l-~HPnIvkl~~v~~t~~  128 (596)
T KOG0586|consen   51 DSNSVGL-YVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSL-NHPNIVKLFSVIETEA  128 (596)
T ss_pred             ccccccc-eeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhc-CCcceeeeeeeeeecc
Confidence            3445555 99999999999999877 578899999999998763     23467899776655 9999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      .+|+||||+. |.+++|+..      .+.+.+..++.++.|+   ++|||+++|+|||||    |++.+-+-++..+.
T Consensus       129 ~lylV~eya~~ge~~~yl~~------~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfg  200 (596)
T KOG0586|consen  129 TLYLVMEYASGGELFDYLVK------HGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFG  200 (596)
T ss_pred             eeEEEEEeccCchhHHHHHh------cccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccc
Confidence            9999999996 699999998      5667889999999999   899999999999999    67777665555443

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.65  E-value=3.6e-17  Score=166.61  Aligned_cols=133  Identities=20%  Similarity=0.251  Sum_probs=111.3

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||.. ...+|+.||+|++...      ..+.+.+|+..+.. ++||||+++++++.+....|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKE-VSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHh-CCCCcHhhhHhhhccCCeEEEEE
Confidence            3888899999999998884 5667999999977532      22345678866555 49999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+. |+|.+++..      .+.+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        81 e~~~~~~L~~~~~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~  149 (291)
T cd05612          81 EYVPGGELFSYLRN------SGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAK  149 (291)
T ss_pred             eCCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcch
Confidence            9997 599999977      4568889999999998   899999999999999    88899988887777654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.64  E-value=7e-17  Score=167.27  Aligned_cols=129  Identities=23%  Similarity=0.216  Sum_probs=107.8

Q ss_pred             ccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||+ .+..+|+.||+|++...      ......+|+..+.. ++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh-CCCCCCcceeeEEecCCEEEEEEeCCCC
Confidence            4699999999988 46678999999977643      12244567755544 599999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+|..++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+++.+.
T Consensus        80 ~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~  144 (323)
T cd05595          80 GELFFHLSR------ERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  144 (323)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhcc
Confidence            599988876      4568999999999999   899999999999999    889999998888887653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.64  E-value=2.3e-17  Score=159.49  Aligned_cols=121  Identities=22%  Similarity=0.240  Sum_probs=102.0

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ..+.+.|++.++||+|.|+.|+.+ +..+|+.+|+|++...     ..+...+|+. +.+.++|||||+|.+.+....+.
T Consensus         7 ~~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEar-IC~~LqHP~IvrL~~ti~~~~~~   85 (355)
T KOG0033|consen    7 TKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREAR-ICRKLQHPNIVRLHDSIQEESFH   85 (355)
T ss_pred             cccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHH-HHHhcCCCcEeehhhhhccccee
Confidence            345556999999999999976664 7789999999998854     3456678884 45666999999999999999999


Q ss_pred             EEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          477 YLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       477 yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      |||+|+|.| +|..-|-.      +..++|..+..++.||   |.|+|.++|||||+|
T Consensus        86 ylvFe~m~G~dl~~eIV~------R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvk  137 (355)
T KOG0033|consen   86 YLVFDLVTGGELFEDIVA------REFYSEADASHCIQQILEALAYCHSNGIVHRDLK  137 (355)
T ss_pred             EEEEecccchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCC
Confidence            999999986 87666655      3568999999999999   789999999999999

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.64  E-value=6.7e-17  Score=165.32  Aligned_cols=134  Identities=19%  Similarity=0.181  Sum_probs=111.7

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||+|+||.||.+ ...+++.||||++....    .....+|+..+.. ++||||+++++++......|+||||
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~   84 (303)
T cd07869           6 SYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKG-LKHANIVLLHDIIHTKETLTLVFEY   84 (303)
T ss_pred             cceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhh-CCCCCcCeEEEEEecCCeEEEEEEC
Confidence            3899999999999998884 56688999999886431    2245678866655 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.++|.+++...     .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        85 ~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  151 (303)
T cd07869          85 VHTDLCQYMDKH-----PGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLAR  151 (303)
T ss_pred             CCcCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcce
Confidence            999999988762     3458888999999999   899999999999999    88888988877776543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.64  E-value=8.5e-17  Score=166.47  Aligned_cols=132  Identities=23%  Similarity=0.274  Sum_probs=109.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----ceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----DFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----~~~y  477 (549)
                      |++.+.||+|+||.||.. +..+|+.||||++...     ....+.+|+..+.. ++||||+++++++...     ...|
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRL-LRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHh-CCCCCEeeecceEeccCCCCCceEE
Confidence            888999999999998884 6678999999987642     22346689866655 5999999999987543     2489


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||.++|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        81 lv~e~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~  151 (338)
T cd07859          81 VVFELMESDLHQVIKA------NDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLAR  151 (338)
T ss_pred             EEEecCCCCHHHHHHh------cccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccc
Confidence            9999999999999876      4568999999999999   899999999999999    88999998888777654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.64  E-value=8.3e-17  Score=166.65  Aligned_cols=129  Identities=26%  Similarity=0.272  Sum_probs=107.6

Q ss_pred             ccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||+||. .+..+|+.||+|++.+.      ......+|...+++.++||||+++++++...+..|+|||||. 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4699999999888 46678999999977543      122345565556677799999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|+.++..+++.+
T Consensus        81 ~~L~~~l~~------~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~  144 (325)
T cd05604          81 GELFFHLQR------ERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCK  144 (325)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcc
Confidence            599888876      4568999999999999   899999999999999    88999988888777654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.63  E-value=1.2e-16  Score=172.55  Aligned_cols=135  Identities=21%  Similarity=0.186  Sum_probs=115.6

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH--HHhhhhHHHHHHHHhcCCC-----CCeeEEeeeccCcceE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--ALHDVAFKEIQNLIASDQH-----PNIVRWYGVENDKDFV  476 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--~~~~~~~~Ei~~L~~~l~H-----pNIVrl~g~~~~~~~~  476 (549)
                      ++-+|++.+.||+|+||.|+++ +..+++.||||+++.  ....+...|+.+|..+.+|     -|+||++++|...+++
T Consensus       184 i~~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hl  263 (586)
T KOG0667|consen  184 IAYRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHL  263 (586)
T ss_pred             eEEEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccce
Confidence            4446999999999999999985 788999999999984  3566788898766555324     3899999999999999


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      |||+|++.-+|.++|+.++    ..+++...++.++.||   |.+||+.+|||+|||    |+..-+++.+.++
T Consensus       264 ciVfELL~~NLYellK~n~----f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVI  333 (586)
T KOG0667|consen  264 CIVFELLSTNLYELLKNNK----FRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVI  333 (586)
T ss_pred             eeeehhhhhhHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEE
Confidence            9999999999999999854    6779999999999999   889999999999999    7777777766544

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=6.8e-17  Score=168.34  Aligned_cols=133  Identities=26%  Similarity=0.277  Sum_probs=112.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|.+.+.||+|+||.||.+ +..+|+.||||++....      ...+.+|+..+. .++||||+++++++.+.+..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~-~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILA-DADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHH-hcCCCCccchhhheecCCeEEEEE
Confidence            3888999999999998884 66689999999876532      223556775554 449999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+++++
T Consensus        81 e~~~~~~L~~~l~~------~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~  149 (350)
T cd05573          81 EYMPGGDLMNLLIR------KDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCK  149 (350)
T ss_pred             cCCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCc
Confidence            9997 599999987      4568999999999999   899999999999999    88999998888777664

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.63  E-value=9.1e-17  Score=166.23  Aligned_cols=129  Identities=27%  Similarity=0.271  Sum_probs=107.3

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||+||.. ...+|+.||+|++.+..      ......|...+++.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            47999999998884 66789999999776431      22344565556677799999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+.+.+
T Consensus        81 g~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~  144 (323)
T cd05575          81 GELFFHLQR------ERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCK  144 (323)
T ss_pred             CCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCc
Confidence            599999876      4568889999999999   899999999999999    88999988888777654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.63  E-value=9.9e-17  Score=165.65  Aligned_cols=129  Identities=23%  Similarity=0.254  Sum_probs=106.8

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||+. ...+++.||||++....      .+....|...+....+||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999998884 56678899999776431      22344566556556699999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 g~L~~~~~~------~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~  144 (316)
T cd05592          81 GDLMFHIQS------SGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCe
Confidence            599999876      4568999999999999   899999999999999    88999988888877664

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=9.8e-17  Score=166.78  Aligned_cols=134  Identities=19%  Similarity=0.160  Sum_probs=109.9

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||. ....+++.||+|++.+.      ....+.+|+..+ ..++|+||+++++++...+.+|+||
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVL-VNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHH-HhCCCCCCCceEEEEecCCeEEEEE
Confidence            388899999999999887 46677999999987642      122345666544 4459999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|+.++..+.+.+
T Consensus        81 e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  150 (331)
T cd05597          81 DYYVGGDLLTLLSKF-----EDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCL  150 (331)
T ss_pred             ecCCCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCcee
Confidence            9997 5999999762     2458889999999998   889999999999999    88899988877776543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.63  E-value=1.1e-16  Score=169.26  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=110.4

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|++.+.||+|+||.||+ ....+++.+|+|.+.+.      ....+.+|+. +++.++||||+++++++.+...+|+|
T Consensus        43 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~-i~~~~~hp~iv~~~~~~~~~~~~~lv  121 (370)
T cd05621          43 EDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERD-IMAFANSPWVVQLFCAFQDDKYLYMV  121 (370)
T ss_pred             HHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHH-HHHhCCCCCEeeEEEEEEcCCEEEEE
Confidence            3499999999999999888 46677899999976532      1223456664 44556999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.+++..       ..+++.++..++.|+   |+|||+++|+|||||    |++.+|.+++..+++++
T Consensus       122 ~Ey~~gg~L~~~l~~-------~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~  190 (370)
T cd05621         122 MEYMPGGDLVNLMSN-------YDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCM  190 (370)
T ss_pred             EcCCCCCcHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccce
Confidence            99997 599999865       347888999999998   899999999999999    88999998888777654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=8.6e-17  Score=181.38  Aligned_cols=131  Identities=21%  Similarity=0.205  Sum_probs=113.2

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|.+.++||+|+||.|.. +.+.+++.||+|++++..     ...+++|=+.++...+.+.|++|+..|+++.++|||||
T Consensus        76 DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMd  155 (1317)
T KOG0612|consen   76 DFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMD  155 (1317)
T ss_pred             hhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEe
Confidence            399999999999999977 788999999999999741     12344444444555588999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ||+ |||..+|.+      ..++++++++.|...|   |.-||+.|+||||||    |+|.+||.++.+++
T Consensus       156 Y~pGGDlltLlSk------~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFG  220 (1317)
T KOG0612|consen  156 YMPGGDLLTLLSK------FDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFG  220 (1317)
T ss_pred             cccCchHHHHHhh------cCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccch
Confidence            997 599999987      4579999999999999   789999999999999    99999999998764

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.63  E-value=1.1e-16  Score=165.23  Aligned_cols=129  Identities=26%  Similarity=0.252  Sum_probs=106.2

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||++ ...+++.||+|++.+.      ......+|...+++.++||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            47999999998884 6677899999976532      122345566556677799999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+.+
T Consensus        81 ~~L~~~l~~------~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~  144 (321)
T cd05603          81 GELFFHLQR------ERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCK  144 (321)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCc
Confidence            599888876      4568889999999998   899999999999999    88999988887776654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.63  E-value=1.2e-16  Score=166.09  Aligned_cols=128  Identities=24%  Similarity=0.244  Sum_probs=107.3

Q ss_pred             ccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||+ .+..+|+.||+|++.+.      ......+|+..+ +.++||||+++++++...+..|+||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVL-KNTRHPFLTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhCCCCCCcceEEEEEcCCEEEEEEeCCCC
Confidence            4699999999988 46778999999977643      123456777555 45599999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        80 g~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~  143 (328)
T cd05593          80 GELFFHLSR------ERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCK  143 (328)
T ss_pred             CCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCc
Confidence            599988876      4568899999999999   899999999999999    88999998888777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.63  E-value=1.1e-16  Score=165.52  Aligned_cols=129  Identities=26%  Similarity=0.291  Sum_probs=107.9

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||++ ...+++.||||++.+..      .....+|...+....+||||+++++++...+.+|+|||||+ 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999998884 66778999999776431      22445677666666689999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 g~L~~~i~~------~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~  144 (320)
T cd05590          81 GDLMFHIQK------SRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK  144 (320)
T ss_pred             chHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCe
Confidence            599999877      4568899999999998   899999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.62  E-value=1.3e-16  Score=166.81  Aligned_cols=132  Identities=27%  Similarity=0.339  Sum_probs=109.1

Q ss_pred             eeecccccccCCceEEEe-eeec-CchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYE-GRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~-g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |++.+.||+|+||.||.+ ...+ +..||+|++.+.      ..+.+.+|+..+ +.++||||+++++++...+..|+||
T Consensus        32 y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~~~~~~~~~~~lv~  110 (340)
T PTZ00426         32 FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKIL-NYINHPFCVNLYGSFKDESYLYLVL  110 (340)
T ss_pred             cEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHH-HhCCCCCCcceEEEEEeCCEEEEEE
Confidence            999999999999998875 3333 368999966432      233456788555 4459999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+++++
T Consensus       111 Ey~~~g~L~~~i~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~  179 (340)
T PTZ00426        111 EFVIGGEFFTFLRR------NKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAK  179 (340)
T ss_pred             eCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCe
Confidence            9997 699999987      4568899999999998   889999999999999    88999988887777654

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.62  E-value=1.3e-16  Score=165.62  Aligned_cols=129  Identities=22%  Similarity=0.193  Sum_probs=107.9

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||.+ ...+++.||+|++.+..      .....+|...+..+.+||||+++++++......|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999998874 66788999999877532      22355677666666689999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      .+.+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+.+
T Consensus        81 g~L~~~~~~------~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  144 (329)
T cd05588          81 GDLMFHMQR------QRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK  144 (329)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccc
Confidence            599988876      4579999999999999   889999999999999    88889888877776654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.62  E-value=1.3e-16  Score=164.99  Aligned_cols=129  Identities=25%  Similarity=0.254  Sum_probs=107.2

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||.+ ...+++.||||++.+..      ......|...+....+||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46999999998884 56678999999776531      22345677666666689999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 ~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~  144 (321)
T cd05591          81 GDLMFQIQR------SRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCK  144 (321)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccce
Confidence            599998876      4568889999999998   889999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.62  E-value=1.7e-16  Score=164.96  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=109.0

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||+ +...+++.||+|++.+.      ....+..|.. ++..++|+||+++++++...+..|+||
T Consensus         2 ~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~-~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERN-VLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHH-HHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            388899999999999888 46677899999976542      1122445554 445559999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        81 Ey~~gg~L~~~l~~~-----~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~  150 (331)
T cd05624          81 DYYVGGDLLTLLSKF-----EDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCL  150 (331)
T ss_pred             eCCCCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEecccee
Confidence            9997 5999999762     2468888999999998   889999999999999    88899988877776653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.62  E-value=2.2e-16  Score=160.16  Aligned_cols=134  Identities=25%  Similarity=0.192  Sum_probs=109.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||.||+. ...+|+.||+|.+....      .....+|+..+.. ++|+||+++++++...+..+++||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEK-VNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHh-cCCCcEEEEEEEEccCCeEEEEEE
Confidence            677889999999998884 66789999999765431      1235578865544 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.++.+++..+++++
T Consensus        81 ~~~~g~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~  150 (285)
T cd05631          81 IMNGGDLKFHIYNMG----NPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAV  150 (285)
T ss_pred             ecCCCcHHHHHHhhC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcE
Confidence            997 59988876522    3458888999999998   889999999999999    88888888877776654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.62  E-value=1.5e-16  Score=164.65  Aligned_cols=129  Identities=26%  Similarity=0.243  Sum_probs=106.0

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||++ +..+++.||+|++.+..      .....+|...+++.++||||+++++++...+..|+|||||. 
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            47999999998884 66678899999775431      12334555455666799999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+.+..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        81 ~~L~~~~~~------~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~  144 (325)
T cd05602          81 GELFYHLQR------ERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCK  144 (325)
T ss_pred             CcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCc
Confidence            599999876      4568888899999998   889999999999999    88999988888877654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=1.4e-16  Score=164.02  Aligned_cols=126  Identities=26%  Similarity=0.198  Sum_probs=105.1

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||.||++ +..+++.||+|++.+.      ......+|+..+.. ++||||+++++++...+..|+|||||+ |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQ-VNCPFIVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-CCCCcEeceeeEEecCCeEEEEEcCCCCCc
Confidence            799999998884 6667899999977543      22345678866655 499999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.+++..      .+.+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        80 L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~  141 (312)
T cd05585          80 LFHHLQR------EGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCK  141 (312)
T ss_pred             HHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccc
Confidence            9999977      4568899999999998   889999999999999    88899988887776654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.62  E-value=1.5e-16  Score=164.22  Aligned_cols=129  Identities=25%  Similarity=0.250  Sum_probs=108.0

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||+. ...+|+.||+|++.+..      ......|...+....+||||+++++++...+.+|+|||||. 
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            47999999998884 66788999999776532      22345676666666799999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 g~L~~~i~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~  144 (316)
T cd05620          81 GDLMFHIQD------KGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCe
Confidence            599999876      4568889999999999   899999999999999    88999988888777654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.62  E-value=1.4e-16  Score=165.59  Aligned_cols=129  Identities=21%  Similarity=0.190  Sum_probs=108.7

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||.. ...+++.||+|++.+..      .....+|+..+....+||||+++++++...+..|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            47999999998884 66778999999776532      22355777667677799999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++.+
T Consensus        81 ~~L~~~~~~------~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~  144 (329)
T cd05618          81 GDLMFHMQR------QRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK  144 (329)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccc
Confidence            599888876      4568999999999998   899999999999999    88999998888777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.62  E-value=1.8e-16  Score=169.04  Aligned_cols=129  Identities=18%  Similarity=0.108  Sum_probs=111.3

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccccc
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCS  486 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~Gs  486 (549)
                      .|++.+.||+|+||.||. .+..+++.||+|....   ....+|++.|.. ++|||||++++++......+++||++.++
T Consensus        93 ~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~---~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~lv~e~~~~~  168 (391)
T PHA03212         93 GFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR---GGTATEAHILRA-INHPSIIQLKGTFTYNKFTCLILPRYKTD  168 (391)
T ss_pred             CcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh---hhhHHHHHHHHh-CCCCCCCCEeEEEEECCeeEEEEecCCCC
Confidence            399999999999999888 4778899999997653   346789966655 59999999999999999999999999999


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..++++
T Consensus       169 L~~~l~~------~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a  229 (391)
T PHA03212        169 LYCYLAA------KRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAA  229 (391)
T ss_pred             HHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcc
Confidence            9999876      4568888999999999   899999999999999    8888898887777665

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.62  E-value=1.6e-16  Score=168.00  Aligned_cols=131  Identities=21%  Similarity=0.164  Sum_probs=109.4

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||+ .+..+++.||+|++.+.      ....+.+|+..+ +.++||||+++++++.+....|+|||
T Consensus        45 y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il-~~~~h~~iv~~~~~~~~~~~~~lv~E  123 (370)
T cd05596          45 FDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIM-AHANSEWIVQLHYAFQDDKYLYMVME  123 (370)
T ss_pred             cEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH-HhCCCCCcceEEEEEecCCEEEEEEc
Confidence            99999999999999888 46678999999977542      122345677554 55599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..       ..+++.++..++.|+   |+|||+++|+|||||    |++.+|.+++..+++.+
T Consensus       124 y~~gg~L~~~l~~-------~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~  190 (370)
T cd05596         124 YMPGGDLVNLMSN-------YDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM  190 (370)
T ss_pred             CCCCCcHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEecccee
Confidence            997 599999865       347888999999888   899999999999999    88999998888776654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.61  E-value=2e-16  Score=164.01  Aligned_cols=133  Identities=20%  Similarity=0.179  Sum_probs=110.6

Q ss_pred             eeecccccccCCceEEEee----eecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG----IYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~----~~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      |++.+.||+|+||.||+..    ..+++.||+|++.+.       ..+...+|+..+..+.+||||+++++++...+.+|
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (332)
T cd05614           2 FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLH   81 (332)
T ss_pred             ceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEE
Confidence            7888999999999988732    346889999976532       12245577766766657999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||. |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.++.+.+
T Consensus        82 lv~e~~~~g~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~  153 (332)
T cd05614          82 LILDYVSGGEMFTHLYQ------RDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSK  153 (332)
T ss_pred             EEEeCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCc
Confidence            9999997 599999876      4568899999999998   899999999999999    88999988888777665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.61  E-value=2.3e-16  Score=163.23  Aligned_cols=133  Identities=23%  Similarity=0.215  Sum_probs=109.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||++ ...+++.||||++.+.      ..+....|...+.....|++|+++++++...+.+|+|||
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVME   81 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEc
Confidence            788899999999998884 5667889999977643      123455677666555445678999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        82 ~~~~g~L~~~~~~------~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05587          82 YVNGGDLMYHIQQ------VGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCK  149 (324)
T ss_pred             CCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcce
Confidence            997 599999876      4568889999999998   899999999999999    88999988888777654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.61  E-value=1.8e-16  Score=167.83  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|++.+.||+|+||.||+ .+..+++.+|+|++.+.      ....+.+|+. +++.++||||+++++++......|+|
T Consensus        43 ~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~-i~~~~~hp~iv~~~~~~~~~~~~~lv  121 (371)
T cd05622          43 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERD-IMAFANSPWVVQLFYAFQDDRYLYMV  121 (371)
T ss_pred             hhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHH-HHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            4499999999999999888 46678899999976532      1223446664 44556999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.+++..       ..+++.++..++.|+   |+|||+++|+|||||    |++.+|+.++..+++.+
T Consensus       122 ~Ey~~gg~L~~~~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~  190 (371)
T cd05622         122 MEYMPGGDLVNLMSN-------YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM  190 (371)
T ss_pred             EcCCCCCcHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCcee
Confidence            99997 599999865       347888899999998   889999999999999    88999988877776654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.61  E-value=1.8e-16  Score=164.31  Aligned_cols=133  Identities=23%  Similarity=0.233  Sum_probs=110.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||.||++ ...+|+.||+|++.+..      ......|...+....+|++|+++++++...+.+|+|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            677889999999999884 66789999999776431      22345677666666567889999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        82 y~~~g~L~~~i~~------~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~  149 (323)
T cd05615          82 YVNGGDLMYHIQQ------VGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             CCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEecccccc
Confidence            997 599999877      4568999999999999   889999999999999    88999988877776644

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.61  E-value=2e-16  Score=163.90  Aligned_cols=134  Identities=22%  Similarity=0.238  Sum_probs=111.1

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|.+.+.||+|+||.||+ ....+|+.||+|++....      ...+.+|+. +++.++||||+++++++...+..|+||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~-i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERD-ILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHH-HHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            388899999999999888 466789999999776532      223445664 445569999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+ |+|.+++..+     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        81 e~~~~~~L~~~l~~~-----~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~  150 (330)
T cd05601          81 EYQPGGDLLSLLNRY-----EDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAA  150 (330)
T ss_pred             CCCCCCCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCe
Confidence            9997 5999999872     2468999999999998   889999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.61  E-value=2.5e-16  Score=166.79  Aligned_cols=122  Identities=27%  Similarity=0.347  Sum_probs=106.6

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHh------hhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH------DVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~------~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      ...+...|++.+.||+|.||.||.+ .+.+|+.+|+|.+.+...      ....+|+.+|..+-.|||||.++++|++..
T Consensus        30 ~~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~  109 (382)
T KOG0032|consen   30 SEDIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD  109 (382)
T ss_pred             cccccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC
Confidence            3455666999999999999998884 677899999998876532      467799988877755999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      .+|+|||+|. |.|++.|..      . .+++..+..++.|+   +.|||+.||+|||||
T Consensus       110 ~~~lvmEL~~GGeLfd~i~~------~-~~sE~da~~~~~~il~av~~lH~~gvvHrDlK  162 (382)
T KOG0032|consen  110 SVYLVMELCEGGELFDRIVK------K-HYSERDAAGIIRQILEAVKYLHSLGVVHRDLK  162 (382)
T ss_pred             eEEEEEEecCCchHHHHHHH------c-cCCHHHHHHHHHHHHHHHHHHHhCCceeccCC
Confidence            9999999998 599999987      2 39999999999999   889999999999999

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.61  E-value=2.5e-16  Score=162.96  Aligned_cols=133  Identities=23%  Similarity=0.230  Sum_probs=110.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.+.+.||+|+||.||++ ...+++.||||++.+..      ......|...+.....|++|+++++++...+.+|+|||
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05616           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVME   81 (323)
T ss_pred             ceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEc
Confidence            778899999999998884 66678899999766431      12344566556666578999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|++++..+++.+
T Consensus        82 ~~~~g~L~~~~~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~  149 (323)
T cd05616          82 YVNGGDLMYQIQQ------VGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  149 (323)
T ss_pred             CCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCce
Confidence            997 699999876      4568899999999999   899999999999999    89999998888777654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=2.3e-16  Score=157.57  Aligned_cols=137  Identities=23%  Similarity=0.230  Sum_probs=116.5

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.+ |...++||+|.||+|.+ +.+.+++.+|+|+++++.      ....+.|-+.|... +||.+..|-..|+.++.
T Consensus       165 vTm~d-FdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~-~HPFLt~LKYsFQt~dr  242 (516)
T KOG0690|consen  165 VTMED-FDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNC-RHPFLTSLKYSFQTQDR  242 (516)
T ss_pred             eccch-hhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhc-cCcHHHHhhhhhccCce
Confidence            34455 99999999999999988 578899999999999862      12234555455555 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|+||||++ |.|+-.|.+      ...++++.++.+-..|   |.|||+++||.||||    |+|.+||.++..++|-+
T Consensus       243 lCFVMeyanGGeLf~HLsr------er~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCK  316 (516)
T KOG0690|consen  243 LCFVMEYANGGELFFHLSR------ERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCK  316 (516)
T ss_pred             EEEEEEEccCceEeeehhh------hhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccch
Confidence            999999998 599888877      5679999999999988   889999999999999    79999999999888753

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.60  E-value=2.5e-16  Score=162.97  Aligned_cols=132  Identities=23%  Similarity=0.271  Sum_probs=107.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHH--HhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNL--IASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L--~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.+.||+|+||.||.. ...+++.||||++.+..      .+...+|+..+  ++.++||||+++++++...+..|+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            567889999999998884 66789999999776431      22344555433  3455899999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||. |+|..+++.       ..+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 ~E~~~~~~L~~~~~~-------~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~  149 (324)
T cd05589          81 MEYAAGGDLMMHIHT-------DVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCK  149 (324)
T ss_pred             EcCCCCCcHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCc
Confidence            99998 599888754       458999999999999   889999999999999    88999988877776543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=2.5e-16  Score=163.20  Aligned_cols=137  Identities=23%  Similarity=0.300  Sum_probs=116.9

Q ss_pred             CccceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHh-cCCCCCeeEEeeeccCcc----eE
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIA-SDQHPNIVRWYGVENDKD----FV  476 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~-~l~HpNIVrl~g~~~~~~----~~  476 (549)
                      .+.|++...+.+.||+|.||+ ++++.+.|+.||||++.......+++|.++.+. .++|+||..+++.-..+.    .+
T Consensus       206 QRTiarqI~L~e~IGkGRyGE-VwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQL  284 (513)
T KOG2052|consen  206 QRTIARQIVLQEIIGKGRFGE-VWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQL  284 (513)
T ss_pred             HHhhhheeEEEEEecCccccc-eeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEE
Confidence            457788899999999999999 678999999999999997777788888776554 459999999998866543    58


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc--------eeEEEeecc----ccccCCCCch
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS--------VKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~--------~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |||.+|.+ |||+|||.+       ..++.....++++.+   |+|||.        -.|.|||||    |++.||..-+
T Consensus       285 wLvTdYHe~GSL~DyL~r-------~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~I  357 (513)
T KOG2052|consen  285 WLVTDYHEHGSLYDYLNR-------NTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI  357 (513)
T ss_pred             EEeeecccCCcHHHHHhh-------ccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEE
Confidence            99999997 999999987       458888888888877   999992        259999999    9999999999


Q ss_pred             hhhhhh
Q 042769          541 LLLSLM  546 (549)
Q Consensus       541 ~l~~Lm  546 (549)
                      .+|+|+
T Consensus       358 ADLGLA  363 (513)
T KOG2052|consen  358 ADLGLA  363 (513)
T ss_pred             eeceee
Confidence            988875

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.60  E-value=2.9e-16  Score=162.56  Aligned_cols=128  Identities=25%  Similarity=0.259  Sum_probs=105.7

Q ss_pred             ccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||. .+..+|+.||+|++.+..      .....+|++.+ ..++||||+++++++...+..|||||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l-~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVL-QNSRHPFLTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-HhCCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            4699999999988 466789999999776431      22345677555 44599999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |+|||+ ++|+|||||    |++.+|.+++..+.+.+
T Consensus        80 ~~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~  144 (325)
T cd05594          80 GELFFHLSR------ERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCK  144 (325)
T ss_pred             CcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCe
Confidence            599988876      4568999999999999   899997 899999999    88999988888777654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.4e-16  Score=166.95  Aligned_cols=123  Identities=27%  Similarity=0.370  Sum_probs=107.1

Q ss_pred             CccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .-+|.-+|.+.+.||+|.|+.|-+ ++.++|..||||++.+..     ...+++|++. +++.+||||||||++......
T Consensus        13 DgkIAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRC-MKLVQHpNiVRLYEViDTQTK   91 (864)
T KOG4717|consen   13 DGKIAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRC-MKLVQHPNIVRLYEVIDTQTK   91 (864)
T ss_pred             ccceeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHH-HHHhcCcCeeeeeehhcccce
Confidence            345666799999999999996555 689999999999998763     3357789955 467799999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +|||+|+-. |+|++||-++     ...+.++.+..|++||   +.|||+..+||||||
T Consensus        92 lyLiLELGD~GDl~DyImKH-----e~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLK  145 (864)
T KOG4717|consen   92 LYLILELGDGGDLFDYIMKH-----EEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLK  145 (864)
T ss_pred             EEEEEEecCCchHHHHHHhh-----hccccHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Confidence            999999997 6999999884     3579999999999999   789999999999999

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.60  E-value=3.2e-16  Score=161.98  Aligned_cols=129  Identities=24%  Similarity=0.238  Sum_probs=106.5

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||.. ...+++.||||++....      ......|...+....+||||+++++++.+.+.+|+||||++ 
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            47999999998884 56678899999776531      22345566566666799999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+++.+
T Consensus        81 g~L~~~l~~------~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~  144 (316)
T cd05619          81 GDLMFHIQS------CHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcce
Confidence            599999976      4468888999999998   889999999999999    88899988877776654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.60  E-value=5e-16  Score=165.45  Aligned_cols=135  Identities=18%  Similarity=0.152  Sum_probs=112.8

Q ss_pred             cceeeeeecccccccCCceEEEe---eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE---GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~---~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .+...|.+.+.||+|+||.||.+   +..+++.||+|.+...  ....+|+..|.. ++|||||++++++......|++|
T Consensus        89 ~~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~--~~~~~E~~il~~-l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         89 VVRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG--KTPGREIDILKT-ISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             hccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc--ccHHHHHHHHHh-cCCCCccceeeeEeeCCEEEEEe
Confidence            34445999999999999998874   2345688999987643  335678866655 49999999999999999999999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++.++|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+.+..+.+.+
T Consensus       166 e~~~~~l~~~l~~------~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~  233 (392)
T PHA03207        166 PKYKCDLFTYVDR------SGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAAC  233 (392)
T ss_pred             hhcCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCcccc
Confidence            9999999999855      4578999999999999   889999999999999    88999988888777654

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.60  E-value=2.6e-16  Score=166.67  Aligned_cols=141  Identities=21%  Similarity=0.162  Sum_probs=110.6

Q ss_pred             eeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.+.||+|+||.||.+.      ..++..||||+++..    ..+.+.+|+..|..+.+||||++++++|...+..+
T Consensus        36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~  115 (375)
T cd05104          36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTL  115 (375)
T ss_pred             HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcce
Confidence            38889999999999987642      234668999988642    23356789977766658999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC-----------------------------------------------------------
Q 042769          478 LSLERCT-CSLDDLIQTYSDS-----------------------------------------------------------  497 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~-----------------------------------------------------------  497 (549)
                      +|||||+ |+|.++++.....                                                           
T Consensus       116 lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (375)
T cd05104         116 VITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYI  195 (375)
T ss_pred             eeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceec
Confidence            9999997 6999999753210                                                           


Q ss_pred             ----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          498 ----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       498 ----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                                .....+++..+..++.|+   |+|||+++|+|||||    |++.++.+++..+++++.
T Consensus       196 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~  263 (375)
T cd05104         196 DQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARD  263 (375)
T ss_pred             ccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCcccee
Confidence                      001246677788888898   899999999999999    788888887777777653

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.60  E-value=4e-16  Score=161.89  Aligned_cols=129  Identities=22%  Similarity=0.182  Sum_probs=107.9

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||+. ...+++.||+|++.+..      ...+.+|...+....+||||+++++++.....+|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            47999999998884 56778999999877532      22355777666677689999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+.+.+
T Consensus        81 ~~L~~~~~~------~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~  144 (327)
T cd05617          81 GDLMFHMQR------QRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCK  144 (327)
T ss_pred             CcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccce
Confidence            599988876      4568999999999998   899999999999999    88999988877776543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.2e-16  Score=162.57  Aligned_cols=138  Identities=23%  Similarity=0.227  Sum_probs=106.6

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----  474 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----  474 (549)
                      .+....-.|...+++|.|+||.||.. ...+++.||||+.... ....-+|++.|. .++|||||+|..+|....     
T Consensus        18 ~~~~~~i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d-~r~knrEl~im~-~l~HpNIV~L~~~f~~~~~~d~~   95 (364)
T KOG0658|consen   18 DGKKVEISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQD-KRYKNRELQIMR-KLDHPNIVRLLYFFSSSTESDEV   95 (364)
T ss_pred             CCcceEEEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCC-CCcCcHHHHHHH-hcCCcCeeeEEEEEEecCCCchh
Confidence            34445555888999999999988874 4566899999987754 234458887776 559999999988875322     


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLL  542 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l  542 (549)
                      +..+||||++-+|.++++.+.  ..+..++...++.++.|+   |.|||+.+|+|||||    |+|.+ |.-++.+
T Consensus        96 ~lnlVleymP~tL~~~~r~~~--~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicD  169 (364)
T KOG0658|consen   96 YLNLVLEYMPETLYRVIRHYT--RANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICD  169 (364)
T ss_pred             HHHHHHHhchHHHHHHHHHHh--hcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEecc
Confidence            356899999999999998632  124678899999999999   999999999999999    66655 5444433

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.59  E-value=4.2e-16  Score=161.00  Aligned_cols=129  Identities=24%  Similarity=0.254  Sum_probs=106.9

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||+||.. ...+++.||||++.+..      .....+|...+....+||||+++++++...+.+|+|||||+ 
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            47999999998874 56678899999776531      22345677666555589999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|..++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+.+
T Consensus        81 ~~L~~~~~~------~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  144 (318)
T cd05570          81 GDLMFHIQR------SGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCK  144 (318)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCe
Confidence            599988876      4568999999999999   889999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.59  E-value=4.4e-16  Score=160.62  Aligned_cols=128  Identities=25%  Similarity=0.244  Sum_probs=105.2

Q ss_pred             ccccccCCceEEEe-e---eecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          413 TEIAKGSNGTVVYE-G---IYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~---~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      +.||+|+||.||.. .   ..+|+.||+|++....     .....+|+..+.. ++||||+++++++...+..|+|||||
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAE-VNHPFIVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHh-CCCCCcccEEEEEEcCCEEEEEEcCC
Confidence            57999999998873 2   3568999999776432     2245578865544 49999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+.+
T Consensus        81 ~~~~L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  146 (318)
T cd05582          81 RGGDLFTRLSK------EVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSK  146 (318)
T ss_pred             CCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCc
Confidence            7 699999876      4568999999999999   899999999999999    88889888777766543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.59  E-value=6e-16  Score=157.03  Aligned_cols=134  Identities=25%  Similarity=0.209  Sum_probs=108.6

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||+||. .+..+++.||+|.+....      .....+|+..+..+ +||||+++++++...+..|+|||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV-NSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhc-CCCCEeeeeeeecCCCeEEEEEe
Confidence            77889999999999888 456679999999776431      12345788665554 99999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.+++....    ...+++..+..++.|+   |.|||+++++|||||    |++.+|...+..+.+.+
T Consensus        81 ~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05605          81 LMNGGDLKFHIYNMG----NPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAV  150 (285)
T ss_pred             ccCCCcHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCce
Confidence            997 59988886522    3458899999999999   889999999999999    78888887776665543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.59  E-value=1.8e-16  Score=167.21  Aligned_cols=135  Identities=18%  Similarity=0.283  Sum_probs=113.3

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce-EEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF-VYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~-~yLVm  480 (549)
                      .|...+++|+|+||.+++ +++.++..+++|.|...     ....+.+|+.. ++.++|||||.+++.|..++. .+|+|
T Consensus         5 ~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~l-is~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    5 NYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDL-LSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             hhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHH-HHhccCCCeeeeccchhcCCceEEEEE
Confidence            488999999999999877 68888899999987743     23356788855 455799999999999999988 99999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||+ |+|.+.|.+.+    ...++++.+..++.|+   +.|||+++|+|||||    ++..++..++-.++|++
T Consensus        84 ~Y~eGg~l~~~i~~~k----~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK  154 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQK----GVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAK  154 (426)
T ss_pred             eecCCCCHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhh
Confidence            9998 59999998844    4679999999999999   889999999999999    77777777766666543

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.59  E-value=4.8e-16  Score=154.72  Aligned_cols=137  Identities=23%  Similarity=0.246  Sum_probs=114.8

Q ss_pred             eeecccccccCCceEEEee-eec----CchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG-IYE----GRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-~~~----g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~y  477 (549)
                      |+....||+|.||.||++. ..+    ...+|+|.++.+     .+..+.||+ .|.+.++|||||.|..+|.. +..++
T Consensus        26 ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREi-aL~REl~h~nvi~Lv~Vfl~~d~~v~  104 (438)
T KOG0666|consen   26 YEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREI-ALLRELKHPNVISLVKVFLSHDKKVW  104 (438)
T ss_pred             hhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHH-HHHHHhcCCcchhHHHHHhccCceEE
Confidence            8888999999999999852 222    238999999965     355788999 45555599999999999887 77899


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC----CCCchhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD----GHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~----G~p~~~l~~Lm  546 (549)
                      |++||.+-+|.+.|+.++.... ..++...+..++.||   +.|||++-|+|||||    |+-.+    |..++.+++|.
T Consensus       105 l~fdYAEhDL~~II~fHr~~~~-~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGla  183 (438)
T KOG0666|consen  105 LLFDYAEHDLWHIIKFHRASKA-KQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLA  183 (438)
T ss_pred             EEehhhhhhHHHHHHHhccchh-ccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHH
Confidence            9999999999999998775433 578999999999999   789999999999999    66666    88888888887


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      |
T Consensus       184 R  184 (438)
T KOG0666|consen  184 R  184 (438)
T ss_pred             H
Confidence            6

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.59  E-value=6.5e-16  Score=160.56  Aligned_cols=133  Identities=19%  Similarity=0.159  Sum_probs=107.9

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.++||+|+||.||. ....+++.+|+|++.+.      ....+.+|+..+ ..++|+||+++++++.+.+..|+||
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l-~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL-VNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHH-hhCCCCCEeeEEEEEecCCEEEEEE
Confidence            388899999999999887 45667888999977542      112244566444 4559999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||. |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++.
T Consensus        81 ey~~~g~L~~~l~~~-----~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a  149 (332)
T cd05623          81 DYYVGGDLLTLLSKF-----EDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSC  149 (332)
T ss_pred             eccCCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchh
Confidence            9997 6999999762     2458888899999998   889999999999999    8888998887777654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.59  E-value=3.8e-16  Score=164.87  Aligned_cols=132  Identities=19%  Similarity=0.240  Sum_probs=110.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----eEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----FVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----~~y  477 (549)
                      |++.+.||+|+||.||.. +..+|+.||||++...     ....+.+|+..+..+ +||||+++++++...+     ..|
T Consensus         2 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           2 VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFF-KHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhC-CCCCcCCHhheecCCCccccceEE
Confidence            678899999999998874 5678999999987532     234567888666554 9999999999998776     799


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||||+.++|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+.+++
T Consensus        81 lv~e~~~~~l~~~~~~------~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~  151 (372)
T cd07853          81 VVTELMQSDLHKIIVS------PQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLAR  151 (372)
T ss_pred             EEeeccccCHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEecccccee
Confidence            9999999999988866      4568999999999999   899999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.59  E-value=4.7e-16  Score=159.50  Aligned_cols=133  Identities=19%  Similarity=0.211  Sum_probs=110.1

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |.+.+.||+|+||.||. ....+++.||+|.+....    .....+|+..+.. ++||||+++++++..++..|+||||+
T Consensus         8 y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   86 (309)
T cd07872           8 YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKD-LKHANIVTLHDIVHTDKSLTLVFEYL   86 (309)
T ss_pred             eEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHh-CCCCCcceEEEEEeeCCeEEEEEeCC
Confidence            88999999999999887 456678899999876432    2245678866555 49999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .++|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        87 ~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~  152 (309)
T cd07872          87 DKDLKQYMDDC-----GNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR  152 (309)
T ss_pred             CCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccce
Confidence            99999988762     2357888888899898   899999999999999    88888888777766543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.59  E-value=4.2e-16  Score=161.40  Aligned_cols=128  Identities=27%  Similarity=0.254  Sum_probs=105.2

Q ss_pred             ccccccCCceEEEee----eecCchhHHHHHHHHH-------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          413 TEIAKGSNGTVVYEG----IYEGRPVAVKRLVRAL-------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~----~~~g~~VAVK~i~~~~-------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.||+|+||.||.+.    ..+++.||+|.+.+..       .....+|+..|. .++||||+++++++..++..|+|||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~-~l~hp~iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILE-AVKHPFIVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHH-hCCCCchhceeeEEecCCeEEEEEe
Confidence            579999999988742    3468899999765421       223457886554 4599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+. |+|.+++..      .+.+.+..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+++++
T Consensus        81 ~~~~~~L~~~~~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (323)
T cd05584          81 YLSGGELFMHLER------EGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCK  148 (323)
T ss_pred             CCCCchHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCe
Confidence            998 599999977      4567888888888888   899999999999999    88999998888887765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=5.9e-16  Score=160.51  Aligned_cols=127  Identities=25%  Similarity=0.216  Sum_probs=104.1

Q ss_pred             ccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcC--CCCCeeEEeeeccCcceEEEEecccc-
Q 042769          415 IAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASD--QHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       415 LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l--~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ||+|+||+||+ .+..+++.||||++.+..      ......|...+....  +||||+++++++......|+|||||. 
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            79999999888 466789999999775431      112334554454444  79999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++.+.+
T Consensus        81 g~L~~~l~~------~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~  144 (330)
T cd05586          81 GELFWHLQK------EGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSK  144 (330)
T ss_pred             ChHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCc
Confidence            599999876      4568999999999999   889999999999999    88999988887777654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.58  E-value=8.5e-16  Score=166.40  Aligned_cols=138  Identities=17%  Similarity=0.129  Sum_probs=107.1

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC--------cceE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND--------KDFV  476 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--------~~~~  476 (549)
                      .+.|.+.+.||+|+||.||++ ...+++.||||++... .....+|+..|.. ++|||||++++++..        ..++
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-~~~~~~Ei~il~~-l~h~niv~l~~~~~~~~~~~~~~~~~l  142 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD-PQYKNRELLIMKN-LNHINIIFLKDYYYTECFKKNEKNIFL  142 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC-cchHHHHHHHHHh-cCCCCCcceeeeEeecccccCCCceEE
Confidence            345999999999999998884 5678899999977543 2234578866554 599999999887643        2357


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~Lmr  547 (549)
                      ++|||||+++|.+++....  .....+++..++.++.|+   |+|||+++|+|||||    |++.++ .+++..+++++
T Consensus       143 ~lvmE~~~~~l~~~~~~~~--~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~  219 (440)
T PTZ00036        143 NVVMEFIPQTVHKYMKHYA--RNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAK  219 (440)
T ss_pred             EEEEecCCccHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccch
Confidence            8999999999888876432  124568899999999998   899999999999999    777665 47777777665

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.58  E-value=9e-17  Score=170.54  Aligned_cols=132  Identities=25%  Similarity=0.316  Sum_probs=111.1

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ++|.-.+.||.|+||.||+ .+..+.+.||||++.-+      .-+.+++|+..|..+ +|||+|.+.|||......|||
T Consensus        26 klf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l-~HPntieYkgCyLre~TaWLV  104 (948)
T KOG0577|consen   26 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQL-RHPNTIEYKGCYLREHTAWLV  104 (948)
T ss_pred             HHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhc-cCCCcccccceeeccchHHHH
Confidence            4577789999999999999 58888999999988732      334678999776665 999999999999999999999


Q ss_pred             ecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          480 LERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       480 mE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ||||-|+-.+++.-++     +++.+..+..|+.+.   |.|||+.+.||||||    |+...|..++.+++
T Consensus       105 MEYClGSAsDlleVhk-----KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFG  171 (948)
T KOG0577|consen  105 MEYCLGSASDLLEVHK-----KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFG  171 (948)
T ss_pred             HHHHhccHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeecccc
Confidence            9999998777776643     578889999898887   889999999999999    88888876666554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.58  E-value=2.2e-15  Score=160.87  Aligned_cols=131  Identities=15%  Similarity=0.264  Sum_probs=105.3

Q ss_pred             CceeccCCCcccccc-ccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhcC
Q 042769            1 VSWTFGTGTPIYSSY-QAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKTA   67 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~s   67 (549)
                      ++|++..|+.+.+.| +++          |++..+.+|..+.+|.|||+|. +|++.|.+++..           .+.++
T Consensus        46 ~~W~~~~g~g~~~~~~~~s----------Pvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~  115 (394)
T PRK11138         46 TVWSTSVGDGVGDYYSRLH----------PAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG  115 (394)
T ss_pred             eeeEEEcCCCCccceeeec----------cEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc
Confidence            468888888764211 111          7787888888889999999999 999999998865           56678


Q ss_pred             CCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEE
Q 042769           68 PHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL  147 (549)
Q Consensus        68 P~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (549)
                      |++. +|.||+|+.++.+||+|++||+++|++..++..                           ...|...    .++|
T Consensus       116 ~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---------------------------~ssP~v~----~~~v  163 (394)
T PRK11138        116 VTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA---------------------------LSRPVVS----DGLV  163 (394)
T ss_pred             cEEE-CCEEEEEcCCCEEEEEECCCCCCcccccCCCce---------------------------ecCCEEE----CCEE
Confidence            9888 899999999999999999999999999886410                           0112121    2799


Q ss_pred             EEEcccceeecccCCCCCceeeeeee
Q 042769          148 FITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       148 ~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      |++..++.|+|+|+++|+++|++...
T Consensus       164 ~v~~~~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        164 LVHTSNGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             EEECCCCEEEEEEccCCCEeeeecCC
Confidence            99999999999999999999999875

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.58  E-value=5.9e-16  Score=162.75  Aligned_cols=131  Identities=17%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCS  486 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~Gs  486 (549)
                      .|++.+.||+|+||.||++ ...+++.||+|....   .....|+..+. .++||||+++++++......++|||++.|+
T Consensus        67 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~---~~~~~E~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  142 (357)
T PHA03209         67 GYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK---GTTLIEAMLLQ-NVNHPSVIRMKDTLVSGAITCMVLPHYSSD  142 (357)
T ss_pred             CcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc---cccHHHHHHHH-hCCCCCCcChhheEEeCCeeEEEEEccCCc
Confidence            3999999999999998874 556678999996442   23456885554 459999999999999999999999999999


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.++...+..+++.+
T Consensus       143 l~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  205 (357)
T PHA03209        143 LYTYLTKR-----SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQ  205 (357)
T ss_pred             HHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCcccc
Confidence            99998762     3568899999999998   899999999999999    88888888777666543

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.57  E-value=8.2e-16  Score=159.75  Aligned_cols=134  Identities=20%  Similarity=0.261  Sum_probs=112.0

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||+ ....++..+|+|.+...    ....+.+|++.|.++ +||||+++++++...+..++|||
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC-CCCCCCeEEEEEEECCEEEEEee
Confidence            3499999999999999887 46677889999977643    234577888766555 99999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.+++..      ...+++..+..++.|+   |.|||++ +|+|||||    |++.+|.+++..+.+++
T Consensus        84 ~~~~~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  152 (331)
T cd06649          84 HMDGGSLDQVLKE------AKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (331)
T ss_pred             cCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccc
Confidence            998 599999977      4568888999999998   8899985 69999999    88899988887777654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.57  E-value=7.4e-16  Score=163.25  Aligned_cols=140  Identities=22%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             eeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.+.||+|+||.||.. ..     .+++.||+|++...    ....+.+|+..+..+.+|+|||+++++|...+..|
T Consensus        39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~  118 (374)
T cd05106          39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVL  118 (374)
T ss_pred             HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeE
Confidence            3889999999999998763 22     23457999988642    23356789877766658999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC-----------------------------------------------------------
Q 042769          478 LSLERCT-CSLDDLIQTYSDS-----------------------------------------------------------  497 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~-----------------------------------------------------------  497 (549)
                      +|||||. |+|.++++.....                                                           
T Consensus       119 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (374)
T cd05106         119 VITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSK  198 (374)
T ss_pred             EeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccccc
Confidence            9999997 6999998653210                                                           


Q ss_pred             -----CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          498 -----SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       498 -----~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                           .....+++..++.++.|+   |+|||+++|+|||||    |++.++.+++..+.+.+
T Consensus       199 ~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~  260 (374)
T cd05106         199 DEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLAR  260 (374)
T ss_pred             chhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeee
Confidence                 011246777888999999   899999999999999    78888888777776654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.57  E-value=5.3e-17  Score=160.64  Aligned_cols=132  Identities=20%  Similarity=0.309  Sum_probs=115.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHH-HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |.+..+||+|+||.|+++ ++.+|+.+|+|.+.. ...+.+.+|+.+|+.+ +.|++|++||.|..+..+|||||||. |
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC-~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQC-KSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHc-CCchhhhhhhhhccCCceEeehhhcCCC
Confidence            888899999999998884 889999999998874 3566788999776655 99999999999999999999999997 8


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +..+.++-     .++.+++..+..++...   |+|||..+-||||||    |++.+|+.++..++.+
T Consensus       114 SiSDI~R~-----R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVA  176 (502)
T KOG0574|consen  114 SISDIMRA-----RRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVA  176 (502)
T ss_pred             cHHHHHHH-----hcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhcccc
Confidence            99999986     25689999999888876   899999999999999    9999999988877643

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.57  E-value=4.3e-16  Score=157.43  Aligned_cols=134  Identities=15%  Similarity=0.182  Sum_probs=108.0

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|++.+.||+|+||.||++ ...+++.||||++...     ..+...+|+..+.. ++||||+++++++...+..|+|||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRT-LKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHh-CCCccccchhhhEecCCEEEEEEe
Confidence            3889999999999998874 6667899999977643     22345678865544 599999999999999999999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+.+++.+.+...     ...+++..++.++.|+   |.|||+.+|+|||||    |++.+|..++..+.+.+
T Consensus        81 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~  148 (287)
T cd07848          81 YVEKNMLELLEEM-----PNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFAR  148 (287)
T ss_pred             cCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcc
Confidence            9987555555441     3468889999999999   889999999999999    78888887776666543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.57  E-value=9e-16  Score=153.85  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=105.8

Q ss_pred             eeecccccccCCceEEEe-ee---ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GI---YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~---~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |++.+.||+|+||.||.. ..   ..+..||+|.+...    ....+.+|+..+.. ++||||+++++++...+..++||
T Consensus         7 ~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~   85 (266)
T cd05064           7 IKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQ-FDHSNIVRLEGVITRGNTMMIVT   85 (266)
T ss_pred             eEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCcCeEEEEEecCCCcEEEE
Confidence            888999999999998763 22   34678999987643    12345678866655 49999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||++ |+|.+++...     ...+++..++.++.|+   |+|||+++++|||||    |++.++.+....+.+
T Consensus        86 e~~~~~~L~~~l~~~-----~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~  153 (266)
T cd05064          86 EYMSNGALDSFLRKH-----EGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRR  153 (266)
T ss_pred             EeCCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcc
Confidence            9998 5999998762     2468889999999999   899999999999999    788888776665543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.57  E-value=9e-16  Score=154.44  Aligned_cols=138  Identities=22%  Similarity=0.245  Sum_probs=112.7

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||+|+||.||+ .+..+|+.||+|++...    .......|+..+.+..+||||+++++++..+...|++|||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            388889999999999888 46678999999977643    1234556776666777999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|+|.+++.....  ....+++..+..++.|+   |+|||++ +++|||||    |++.++.+++..+.+.+
T Consensus        82 ~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~  152 (283)
T cd06617          82 MDTSLDKFYKKVYD--KGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISG  152 (283)
T ss_pred             hcccHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence            99999888875321  23568999999999999   8999987 99999999    88888888777666543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.57  E-value=1.4e-15  Score=159.35  Aligned_cols=128  Identities=20%  Similarity=0.203  Sum_probs=104.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |+..+.||+|+||.||+. ...+++.||||++...    ....+.+|+..+.. ++|+||+++++++...+.+|+|||||
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRD-VNHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHh-CCCCCcceeeeEeccCCeEEEEEecC
Confidence            788899999999998884 5667899999987532    23456788866655 49999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.+..          ...+..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.+
T Consensus       155 ~~~~L~~~~----------~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~  216 (353)
T PLN00034        155 DGGSLEGTH----------IADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSR  216 (353)
T ss_pred             CCCcccccc----------cCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccce
Confidence            8 4775432          24556777888888   899999999999999    88999988888777654

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.57  E-value=1e-15  Score=160.77  Aligned_cols=134  Identities=28%  Similarity=0.320  Sum_probs=108.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD----  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----  474 (549)
                      +-+.|++.+.||+|+||.||.. +..+|+.||||++...     ......+|+..+. .++||||+++++++....    
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~~~~~~~~~~~~~~   97 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLK-CVNHKNIISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHH-hCCCCCEeeeeeeeccCCCccc
Confidence            3345999999999999998884 6678999999987642     2345668886554 459999999999986543    


Q ss_pred             --eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          475 --FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       475 --~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                        ..|+||||+.++|.+.+..        .+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+++
T Consensus        98 ~~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~  169 (359)
T cd07876          98 FQDVYLVMELMDANLCQVIHM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL  169 (359)
T ss_pred             cceeEEEEeCCCcCHHHHHhc--------cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCC
Confidence              4799999999988887743        37788888899998   899999999999999    889999888887776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       170 a~  171 (359)
T cd07876         170 AR  171 (359)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.57  E-value=8.3e-16  Score=163.24  Aligned_cols=134  Identities=20%  Similarity=0.288  Sum_probs=111.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-------hh----hhHHHHHHHHhcC--CCCCeeEEeee
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-------HD----VAFKEIQNLIASD--QHPNIVRWYGV  469 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-------~~----~~~~Ei~~L~~~l--~HpNIVrl~g~  469 (549)
                      .+.+ |...+.+|.|+||.|.++ ++.+..+|+||.|.++.       ++    ..-.||++|..+-  .|+||++++++
T Consensus       559 k~s~-yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdf  637 (772)
T KOG1152|consen  559 KFSD-YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDF  637 (772)
T ss_pred             cccc-ceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhe
Confidence            4444 889999999999998885 67778899999888752       11    2336887765441  39999999999


Q ss_pred             ccCcceEEEEecccc-c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          470 ENDKDFVYLSLERCT-C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       470 ~~~~~~~yLVmE~~~-G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |+++++.||+||--. | +|+++|..      ...++|..+..++.|+   +++||+.+|||||||    .++.+|..++
T Consensus       638 FEddd~yyl~te~hg~gIDLFd~IE~------kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~kl  711 (772)
T KOG1152|consen  638 FEDDDYYYLETEVHGEGIDLFDFIEF------KPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKL  711 (772)
T ss_pred             eecCCeeEEEecCCCCCcchhhhhhc------cCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEE
Confidence            999999999999874 7 99999988      5679999999999999   889999999999999    8899998776


Q ss_pred             hhhh
Q 042769          541 LLLS  544 (549)
Q Consensus       541 ~l~~  544 (549)
                      ..++
T Consensus       712 idfg  715 (772)
T KOG1152|consen  712 IDFG  715 (772)
T ss_pred             eecc
Confidence            6543

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.57  E-value=4.4e-16  Score=165.45  Aligned_cols=137  Identities=22%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +...+.++||+|.||.|.++....+..||||.++...    ...+.+|+..|.++ +|||||+|+|+|..++.++||+||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqL-khPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRL-KHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhcc-CCCCeeEEEeeeecCCchHHHHHH
Confidence            3366788999999999988888778999999998642    34577899777666 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+ |+|.+|+..+-    ...+......+++.||   |+||.+.++|||||-    |++.+++.++..+++.|.
T Consensus       617 mEnGDLnqFl~ahe----apt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~  686 (807)
T KOG1094|consen  617 MENGDLNQFLSAHE----LPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRN  686 (807)
T ss_pred             HhcCcHHHHHHhcc----CcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccc
Confidence            97 89999998843    1224455667799999   999999999999998    999999999999988773

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.56  E-value=1.3e-15  Score=155.71  Aligned_cols=139  Identities=21%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             eeeecccccccCCceEEEeee-----------------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEGI-----------------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRW  466 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~-----------------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl  466 (549)
                      .|.+.++||+|+||.||.+..                 .++..||+|.+...    ....+.+|+..+.+ ++||||+++
T Consensus         6 ~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~   84 (304)
T cd05096           6 HLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSR-LKDPNIIRL   84 (304)
T ss_pred             hCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhh-cCCCCeeEE
Confidence            488889999999999887421                 12346899977642    23356788866555 499999999


Q ss_pred             eeeccCcceEEEEecccc-cchhhhhhhcccC-------------CcccccCchhhhHHhhhe---eecccceeEEEeec
Q 042769          467 YGVENDKDFVYLSLERCT-CSLDDLIQTYSDS-------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDL  529 (549)
Q Consensus       467 ~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~-------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDL  529 (549)
                      ++++...+..+++||||. |+|.+++......             .....+++..+..++.|+   |.|||+++|+||||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dl  164 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDL  164 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCc
Confidence            999999999999999997 5999998653211             111246667788899998   89999999999999


Q ss_pred             c----ccccCCCCchhhhhhhh
Q 042769          530 S----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       530 K----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |    |++.+|.+++..+++.+
T Consensus       165 kp~Nill~~~~~~kl~DfG~~~  186 (304)
T cd05096         165 ATRNCLVGENLTIKIADFGMSR  186 (304)
T ss_pred             chhheEEcCCccEEECCCccce
Confidence            9    88999988888777665

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=2.5e-16  Score=167.58  Aligned_cols=130  Identities=24%  Similarity=0.294  Sum_probs=111.6

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|....+||+|+.|.||. ....+++.||||++...   ..+..+.|+..|+.. +|+|||++++.|...+.+|+|||||
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~-~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDL-HHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhc-cchHHHHHHHHhcccceeEEEEeec
Confidence            377789999999999888 46778999999988754   344677999776665 9999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      + |+|.+.+..       ..++|.++..+++++   |+|||.++|||||||    |+..+|.-++-.++.
T Consensus       353 ~ggsLTDvVt~-------~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGF  415 (550)
T KOG0578|consen  353 EGGSLTDVVTK-------TRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGF  415 (550)
T ss_pred             CCCchhhhhhc-------ccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeee
Confidence            8 599999876       449999999999988   899999999999999    899999876665553

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.56  E-value=1.1e-15  Score=173.79  Aligned_cols=132  Identities=27%  Similarity=0.286  Sum_probs=111.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.+.++||+|+||.||++ ...+++.||||++....      ...+.+|+..+ +.++||||+++++++.....+|||||
T Consensus         6 y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~~~~~~~~~~~lVmE   84 (669)
T cd05610           6 FVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDAL-ALSKSPFIVHLYYSLQSANNVYLVME   84 (669)
T ss_pred             EEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHH-HhcCCCCcCeEEEEEEECCEEEEEEe
Confidence            899999999999998884 55678999999876432      23456677554 55699999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. ++|.+++..      .+.+++..++.++.|+   |+|||.++|||||||    |++.+|+.++..+.|.|
T Consensus        85 y~~g~~L~~li~~------~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          85 YLIGGDVKSLLHI------YGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            997 599999976      4568888999999999   899999999999999    88999988887777665

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.56  E-value=1.7e-15  Score=153.28  Aligned_cols=130  Identities=24%  Similarity=0.155  Sum_probs=103.6

Q ss_pred             ccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||+||. ....+++.||+|.+....      .+.+..|+..+. .++||||+++.+++......|+|||||+ |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~-~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILA-KVHSRFIVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHH-hCCCCcEeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            79999999888 466789999999876532      123456776554 4499999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.+++....  .....+++..+..++.|+   |.|||+++|+|||||    |++.+|...+..+.+.+
T Consensus        80 L~~~~~~~~--~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  145 (280)
T cd05608          80 LRYHIYNVD--EENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAV  145 (280)
T ss_pred             HHHHHHhcc--ccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccce
Confidence            988875422  123468899999999999   889999999999999    78888877766665543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.56  E-value=1.2e-15  Score=158.93  Aligned_cols=134  Identities=21%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||. .+..++..+|+|++...    ....+.+|++.+..+ +||||++++++|...++.|+|||
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC-CCCcccceeEEEEECCEEEEEEe
Confidence            3489999999999999888 46667888999876532    234567898766655 99999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+. |+|.+++..      .+.+++..+..++.|+   |.|||+. +|+|||||    |++.+|.+++..+.+.+
T Consensus        84 ~~~~~~L~~~l~~------~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~  152 (333)
T cd06650          84 HMDGGSLDQVLKK------AGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  152 (333)
T ss_pred             cCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcch
Confidence            997 599999977      4467888888999888   8899974 79999999    88889988777766554

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.56  E-value=2.1e-15  Score=165.06  Aligned_cols=137  Identities=18%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             eeeecccccccCCceEEEe-eeec-CchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYE-GRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~-g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|.+.+.||+|+||.||.+ ...+ ++.||+|.+...   ....+.+|+..|.. ++|||||++++++...+..||||||
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~-l~Hpniv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAA-CDHFGIVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHh-CCCCCEeEEEEEEEECCEEEEEEEC
Confidence            3999999999999998874 3444 678888865432   22345678866544 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |. |+|.++++...  .....+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+.+
T Consensus       147 ~~gg~L~~~l~~~~--~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~  217 (478)
T PTZ00267        147 GSGGDLNKQIKQRL--KEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSK  217 (478)
T ss_pred             CCCCCHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCce
Confidence            97 69999886522  123468888999999999   889999999999999    88999988888777654

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.56  E-value=3.9e-15  Score=147.76  Aligned_cols=121  Identities=23%  Similarity=0.253  Sum_probs=103.0

Q ss_pred             cceeeeee-cccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeecc----CcceEE
Q 042769          404 NVGKLFVS-NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEN----DKDFVY  477 (549)
Q Consensus       404 ~igk~y~~-~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~----~~~~~y  477 (549)
                      .|.+.|.+ ..+||-|-.|+|+.+ ++.+++++|+|++..  .+.+++|++.....-.|||||+++++|.    ....+.
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D--s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLL  135 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD--SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLL  135 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc--CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeE
Confidence            34444777 579999999998775 788999999999974  5668888877666669999999999976    345789


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +|||+|+ |.|++.|+.++    ...++|.++..++.||   +.|||+.+|.|||||
T Consensus       136 iVmE~meGGeLfsriq~~g----~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlK  188 (400)
T KOG0604|consen  136 IVMECMEGGELFSRIQDRG----DQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLK  188 (400)
T ss_pred             eeeecccchHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHHhcchhhccCC
Confidence            9999998 59999999854    5679999999999999   899999999999999

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.56  E-value=1.4e-15  Score=155.35  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=109.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |.+.+.||+|+||.||.. ...+++.||+|.+....    .....+|+..+..+ +||||+++++++...+..|+||||+
T Consensus         8 y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~nI~~~~~~~~~~~~~~lv~e~~   86 (301)
T cd07873           8 YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL-KHANIVTLHDIIHTEKSLTLVFEYL   86 (301)
T ss_pred             eEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhc-CCCCcceEEEEEecCCeEEEEEecc
Confidence            899999999999998884 56678999999876431    22456788666555 9999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .++|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++.
T Consensus        87 ~~~l~~~l~~~-----~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~  151 (301)
T cd07873          87 DKDLKQYLDDC-----GNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLA  151 (301)
T ss_pred             ccCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcch
Confidence            99999988762     2457888899999988   889999999999999    8888888777666554

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=4.7e-15  Score=158.66  Aligned_cols=132  Identities=25%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHHh------hhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH------DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~------~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|...+.||-|+||+|.+. ...+...+|+|.+.+...      .....|-.+|... +.+.||+||..|++.+.+|+||
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEA-Dn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEA-DNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhc-CCcceEEEEEEeccCCceEEEE
Confidence            3888999999999999884 556788999999887521      1223444445444 8999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||++ |++..+|.+      .+-|+|+.++.++.++   +++.|..|+||||||    |+|.+||.++-+++|-
T Consensus       709 dYIPGGDmMSLLIr------mgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIR------MGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC  776 (1034)
T ss_pred             eccCCccHHHHHHH------hccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeecccc
Confidence            9998 599999988      6789999999999988   889999999999999    9999999999988874

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.55  E-value=5.3e-15  Score=157.88  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=97.7

Q ss_pred             cccccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           29 SELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        29 ~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      |++..+.+|.++.+|.|||+|+ +|++.|.+.++..+.++|++. ||.||+++.++.+||+|++||+++|++........
T Consensus       116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            6677778888989999999999 999999999999899999999 99999999999999999999999999987531000


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      +.                      +...|...    .+.||++..++.|+|+|+++|+++|.+.++.
T Consensus       195 ~~----------------------~~~sP~v~----~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~  235 (394)
T PRK11138        195 LR----------------------GESAPATA----FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ  235 (394)
T ss_pred             cc----------------------CCCCCEEE----CCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence            00                      00122221    2689999999999999999999999987643

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.55  E-value=1.3e-15  Score=154.30  Aligned_cols=136  Identities=24%  Similarity=0.303  Sum_probs=106.4

Q ss_pred             eeeecccccccCCceEEEe-ee-ecCchhHHHHHHHHH-----hhhhHHHHHHHHh--cCCCCCeeEEeeecc-----Cc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-YEGRPVAVKRLVRAL-----HDVAFKEIQNLIA--SDQHPNIVRWYGVEN-----DK  473 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~--~l~HpNIVrl~g~~~-----~~  473 (549)
                      .|++.+.||+|+||.||++ +. .+++.||+|++....     .....+|+..+..  .++||||+++++++.     ..
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            4888899999999998884 33 346889999776421     1234566655433  347999999999875     34


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..++++|||+.++|.+++....    ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+++.
T Consensus        82 ~~~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~  157 (290)
T cd07862          82 TKLTLVFEHVDQDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  157 (290)
T ss_pred             CcEEEEEccCCCCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccce
Confidence            5689999999999999987632    3458889999999999   899999999999999    8889998888777665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       158 ~  158 (290)
T cd07862         158 R  158 (290)
T ss_pred             E
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.55  E-value=1.9e-15  Score=150.25  Aligned_cols=133  Identities=20%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||.||......+..+|+|.+...  ....+.+|+..+.. ++||||+++++++...+..+++|||++ |
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~iv~e~~~~~   84 (256)
T cd05114           6 LTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMK-LSHPKLVQLYGVCTQQKPLYIVTEFMENG   84 (256)
T ss_pred             cEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHH-CCCCCceeEEEEEccCCCEEEEEEcCCCC
Confidence            7788899999999988765555678999977643  23356778866655 499999999999999999999999997 6


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|.++++..     ...+++..+..++.|+   |.|||+++++|||||    +++.++.+++..+++.+
T Consensus        85 ~L~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~  148 (256)
T cd05114          85 CLLNYLRQR-----QGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTR  148 (256)
T ss_pred             cHHHHHHhC-----ccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCcc
Confidence            999998752     2357888889999888   899999999999999    78888877776666544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.55  E-value=5.8e-15  Score=156.33  Aligned_cols=133  Identities=14%  Similarity=0.207  Sum_probs=108.2

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeec
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLG   79 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~G   79 (549)
                      ++|+++.|+.+..++-.         ..|.+..+.+|.++.||.||++|+ +|+..|.++++..+.++|++. ++.||+|
T Consensus        42 ~~W~~~~~~~~~~~~~~---------~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~  111 (377)
T TIGR03300        42 QVWSASVGDGVGHYYLR---------LQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVG  111 (377)
T ss_pred             eeeEEEcCCCcCccccc---------cceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEE
Confidence            47999999887411000         017777888899999999999998 999999999999999999998 9999999


Q ss_pred             ceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecc
Q 042769           80 SKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSF  159 (549)
Q Consensus        80 sk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~  159 (549)
                      +.++.+|++|++||+++|++..++..                            .+++.+   ..+.||++..|+.|||+
T Consensus       112 ~~~g~l~ald~~tG~~~W~~~~~~~~----------------------------~~~p~v---~~~~v~v~~~~g~l~a~  160 (377)
T TIGR03300       112 TEKGEVIALDAEDGKELWRAKLSSEV----------------------------LSPPLV---ANGLVVVRTNDGRLTAL  160 (377)
T ss_pred             cCCCEEEEEECCCCcEeeeeccCcee----------------------------ecCCEE---ECCEEEEECCCCeEEEE
Confidence            99999999999999999998876410                            011111   12689999999999999


Q ss_pred             cCCCCCceeeeeeeh
Q 042769          160 EPNSDNVSWSMTVAE  174 (549)
Q Consensus       160 d~~~g~~~Wn~~~~~  174 (549)
                      |+++|+++|++....
T Consensus       161 d~~tG~~~W~~~~~~  175 (377)
T TIGR03300       161 DAATGERLWTYSRVT  175 (377)
T ss_pred             EcCCCceeeEEccCC
Confidence            999999999987653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.55  E-value=2.4e-15  Score=163.62  Aligned_cols=133  Identities=18%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +..|.+.+.||+|+||.||.+ ...+++.||||...   .....+|++.|.. ++|+|||++++++...+..+++||++.
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~---~~~~~~E~~iL~~-L~HpnIv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW---YASSVHEARLLRR-LSHPAVLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc---ccCHHHHHHHHHH-CCCCCCCcEEEEEEECCEEEEEEEccC
Confidence            445999999999999998884 56678999999643   2345688866555 599999999999999999999999999


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.++..++..+.+.+
T Consensus       244 ~~L~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~  308 (461)
T PHA03211        244 SDLYTYLGAR-----LRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAAC  308 (461)
T ss_pred             CCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCce
Confidence            9999998762     2468999999999999   899999999999999    88888888877777654

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.55  E-value=1.7e-15  Score=153.02  Aligned_cols=135  Identities=24%  Similarity=0.243  Sum_probs=107.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHh--cCCCCCeeEEeeeccC-----cce
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIA--SDQHPNIVRWYGVEND-----KDF  475 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~--~l~HpNIVrl~g~~~~-----~~~  475 (549)
                      |++.+.||+|+||.||++ ...+++.||+|.+....     .....+|+..+..  .++||||+++++++..     ...
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            788899999999998884 66789999999876431     1234466655433  2479999999998764     345


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+++|||+.++|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+++++
T Consensus        82 ~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~  156 (288)
T cd07863          82 VTLVFEHVDQDLRTYLDKVP----PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLAR  156 (288)
T ss_pred             EEEEEcccccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccc
Confidence            89999999999999987632    3458899999999999   889999999999999    88889888777766553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.54  E-value=3.2e-15  Score=166.25  Aligned_cols=130  Identities=25%  Similarity=0.293  Sum_probs=105.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeee-ccC------cceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGV-END------KDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~-~~~------~~~~y  477 (549)
                      .++.+.|.+|+|+.||.+ ....|..||+|++-..   ......+||..|..+.+|+|||.+++. ...      .-+++
T Consensus        39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Evl  118 (738)
T KOG1989|consen   39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVL  118 (738)
T ss_pred             EEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEE
Confidence            667789999999999995 4444599999988743   344677999888888789999999993 221      23689


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCCCchhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      |.||||. |.|.++|..+.    ...|++.++++|+.++   +.+||.+.  |||||||    |+..+|+-++-+
T Consensus       119 lLmEyC~gg~Lvd~mn~Rl----q~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCD  189 (738)
T KOG1989|consen  119 LLMEYCKGGSLVDFMNTRL----QTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCD  189 (738)
T ss_pred             eehhhccCCcHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCc
Confidence            9999998 69999998743    4569999999999999   89999876  9999999    888888654433

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.54  E-value=2.3e-15  Score=152.51  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=109.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.. ...+++.||+|.+....    .....+|+..+..+ +||||+++++++...+..|+||||+
T Consensus         7 y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   85 (291)
T cd07844           7 YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDL-KHANIVTLHDIIHTKKTLTLVFEYL   85 (291)
T ss_pred             eeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhC-CCcceeeEEEEEecCCeEEEEEecC
Confidence            899999999999998874 55678999999876432    12355788666555 9999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .++|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.++...+.+.
T Consensus        86 ~~~L~~~~~~~-----~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  150 (291)
T cd07844          86 DTDLKQYMDDC-----GGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLA  150 (291)
T ss_pred             CCCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccc
Confidence            99999988762     2367888999999998   889999999999999    8888888777766654

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.54  E-value=2.7e-15  Score=154.02  Aligned_cols=131  Identities=21%  Similarity=0.258  Sum_probs=109.6

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||+ ....++..+|+|.+...    ....+.+|++.+.++ +||||+++++++..++..|++|||+
T Consensus         3 ~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           3 FEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHEC-NSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             ceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEeeCCEEEEEeecc
Confidence            88899999999999887 46667888998876532    234567888776665 9999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + ++|.++++.      ...+++..+..++.|+   |.|||+ .+++|||||    |++.+|.++...+++.
T Consensus        82 ~~~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  147 (308)
T cd06615          82 DGGSLDQVLKK------AGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVS  147 (308)
T ss_pred             CCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCc
Confidence            8 599999987      4568889999999999   899997 689999999    7888888777666544

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.54  E-value=3.3e-15  Score=151.59  Aligned_cols=133  Identities=26%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||+||+ ....+++.+|+|.+....      .....+|+..+.. ++|+||+++++++..++..+++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~-l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEK-VNSQFVVNLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHH-cCCcCceeEEEEEecCCEEEEEEE
Confidence            66778999999999887 466779999999775431      2235678866655 499999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+. |+|.+++....    ...+++..+..++.|+   |.|||+++|+|||||    |++.++......+.++
T Consensus        81 ~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~  149 (285)
T cd05632          81 IMNGGDLKFHIYNMG----NPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLA  149 (285)
T ss_pred             eccCccHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcc
Confidence            998 59988886522    3468999999999999   889999999999999    7788887776666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.54  E-value=3.3e-15  Score=151.72  Aligned_cols=134  Identities=25%  Similarity=0.201  Sum_probs=108.5

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||.||+ ....+++.||||.+....      .....+|+..+. .++|+||+++++.+...+..|++||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~-~l~~~~i~~~~~~~~~~~~~~lv~e   80 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILE-KVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHH-hCCCCCeeeeeEEEecCCEEEEEEE
Confidence            67778999999999988 466789999999775431      223557886554 4599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++ |+|.+++....    ...+++..+..++.|+   |.|||+++|+|||||    |++.+|......+.+++
T Consensus        81 ~~~g~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~  150 (285)
T cd05630          81 LMNGGDLKFHIYHMG----EAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAV  150 (285)
T ss_pred             ecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence            997 59999886522    3458888999999998   889999999999999    78888887777666554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.54  E-value=1.2e-15  Score=163.23  Aligned_cols=129  Identities=23%  Similarity=0.252  Sum_probs=107.6

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      ..+...||+|+||+|| ++.+.| .||||.++..     ..+.+..|+..+.+. +|.||+-++|+|..... .||.-+|
T Consensus       394 v~l~~rIGsGsFGtV~-Rg~whG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkT-RH~NIlLFMG~~~~p~~-AIiTqwC  469 (678)
T KOG0193|consen  394 VLLGERIGSGSFGTVY-RGRWHG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKT-RHENILLFMGACMNPPL-AIITQWC  469 (678)
T ss_pred             hhccceecccccccee-eccccc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhc-chhhheeeehhhcCCce-eeeehhc
Confidence            5667899999999955 455665 6899988743     455678899777766 99999999999998887 8999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +| +|+.+|+..     ...|.....+.|+.|+   +.|||.++|||||||    ++++++..++-+++|+
T Consensus       470 eGsSLY~hlHv~-----etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLa  535 (678)
T KOG0193|consen  470 EGSSLYTHLHVQ-----ETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLA  535 (678)
T ss_pred             cCchhhhhccch-----hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccce
Confidence            98 999999872     3568888889999999   899999999999999    7888888877777764

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.53  E-value=3.8e-15  Score=150.53  Aligned_cols=127  Identities=21%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             ccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||.||+ ....+|+.||+|++....      ......|++.+..+ +||||+++++++....+.|+||||+. |+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKV-NSPFIVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhc-CCCcEEEEEEEEecCCeEEEEEecCCCCC
Confidence            79999999988 466779999999775431      22344677666555 99999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.++.+....+.+.
T Consensus        80 L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~  142 (277)
T cd05607          80 LKYHIYNVG----ERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLA  142 (277)
T ss_pred             HHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceee
Confidence            988886522    3357788888888888   899999999999999    8888888777766554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.53  E-value=2.8e-15  Score=152.16  Aligned_cols=133  Identities=25%  Similarity=0.273  Sum_probs=110.8

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||.. ...+++.||+|.+...      ......+|++.+.++ +||||+++++++...+..|++|
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI-RHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC-CCCCccceeeEEEcCCeEEEEE
Confidence            3888999999999998874 5567899999976542      233466788666555 8999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||++ ++|.+++..      ...+++..+..++.|+   |.|||+++++||||+    |++.+|.+++..+.+++
T Consensus        81 e~~~~~~L~~~~~~------~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~  149 (290)
T cd05580          81 EYVPGGELFSHLRK------SGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAK  149 (290)
T ss_pred             ecCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCcc
Confidence            9996 699999987      4568899999999988   889999999999999    88899988777666554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.53  E-value=1.3e-15  Score=158.68  Aligned_cols=135  Identities=21%  Similarity=0.291  Sum_probs=109.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      +.+.|++.+.||+|+||.||.+ +..+++.||||++...     ......+|+..+..+ +||||+++++++...     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHM-KHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhc-CCCchhhhhhhhcccccccc
Confidence            3455999999999999998884 5678899999987642     223456788666555 999999999987543     


Q ss_pred             -ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 -DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 -~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ...|++||++.++|.+++..       ..+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~  164 (343)
T cd07878          92 FNEVYLVTNLMGADLNNIVKC-------QKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGL  164 (343)
T ss_pred             cCcEEEEeecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcc
Confidence             35799999998899888754       458999999999999   889999999999999    889999888877776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       165 ~~  166 (343)
T cd07878         165 AR  166 (343)
T ss_pred             ce
Confidence            54

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.53  E-value=3.5e-15  Score=159.70  Aligned_cols=140  Identities=21%  Similarity=0.168  Sum_probs=107.3

Q ss_pred             eeeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.++||+|+||.||.+. .     ..+..||||++...    ..+.+.+|+..|..+..|||||+++++|.....+|
T Consensus        38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~  117 (400)
T cd05105          38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIY  117 (400)
T ss_pred             ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceE
Confidence            48888999999999987642 1     12346999988642    23456789977766645999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC-----------------------------------------------------------
Q 042769          478 LSLERCT-CSLDDLIQTYSDS-----------------------------------------------------------  497 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~-----------------------------------------------------------  497 (549)
                      ||||||+ |+|.++|......                                                           
T Consensus       118 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (400)
T cd05105         118 IITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEA  197 (400)
T ss_pred             EEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhh
Confidence            9999997 6999998763210                                                           


Q ss_pred             -------------------------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc
Q 042769          498 -------------------------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS  539 (549)
Q Consensus       498 -------------------------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~  539 (549)
                                                     .....+++..+..++.|+   |.|||+++|+|||||    |++.++..+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~k  277 (400)
T cd05105         198 SKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVK  277 (400)
T ss_pred             hhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEE
Confidence                                           001246677778888888   899999999999999    788887776


Q ss_pred             hhhhhhhh
Q 042769          540 PLLLSLMR  547 (549)
Q Consensus       540 ~~l~~Lmr  547 (549)
                      ...+.+.+
T Consensus       278 L~DfGla~  285 (400)
T cd05105         278 ICDFGLAR  285 (400)
T ss_pred             EEeCCcce
Confidence            66665544

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.53  E-value=3.5e-15  Score=154.54  Aligned_cols=126  Identities=20%  Similarity=0.091  Sum_probs=100.8

Q ss_pred             eccccccc--CCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          411 SNTEIAKG--SNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       411 ~~~~LG~G--~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.++||+|  +|++||+ ....+|+.||+|++....     .....+|+.. ++.++||||+++++++..++..|+||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~-l~~l~hpniv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHV-SKLFNHPNIVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHH-HHhcCCCCeeeEEEEEEECCEEEEEEec
Confidence            45789999  6777777 467789999999887532     2244567754 4555999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      |+ |+|.+++..+.    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.....
T Consensus        81 ~~~~~l~~~~~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~  143 (327)
T cd08227          81 MAYGSAKDLICTHF----MDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLS  143 (327)
T ss_pred             cCCCcHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEc
Confidence            98 69999987632    2458888999999998   899999999999999    77777765443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.53  E-value=2.2e-15  Score=157.78  Aligned_cols=134  Identities=27%  Similarity=0.328  Sum_probs=108.1

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      +.+.|++.+.||+|+||.||.+ +..+++.||||++...     ......+|+..+ +.++||||+++++++...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHH-HHhCCCchhceeeeeeccccccc
Confidence            3345999999999999998874 5677899999987642     233566788555 445999999999987643     


Q ss_pred             -ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 -DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 -~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ...|++||||+++|.+++..        .+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+++
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~  165 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGL  165 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcc
Confidence             35799999999988887754        37778888899998   889999999999999    889999888887777


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       166 ~~  167 (355)
T cd07874         166 AR  167 (355)
T ss_pred             cc
Confidence            65

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.53  E-value=3.8e-15  Score=150.08  Aligned_cols=134  Identities=24%  Similarity=0.276  Sum_probs=109.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.||.. ...+++.||+|.+....     .....+|+..+..+ +||||+++++++..+...|+||||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           2 YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL-QHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             ceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhc-CCCCEeeeEEEEeeCCeEEEEEec
Confidence            778899999999998874 55678999999876431     23456788665554 899999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.++|.+++....   ....+++..++.++.|+   |+|||+++++|||||    |++.+|...+..+.+.
T Consensus        81 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  148 (285)
T cd07861          81 LSMDLKKYLDSLP---KGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLA  148 (285)
T ss_pred             CCCCHHHHHhcCC---CCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccce
Confidence            9999998887532   13568899999999999   899999999999999    7888888777666543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.53  E-value=1.3e-15  Score=158.80  Aligned_cols=130  Identities=23%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHH--HHhcCCCCCeeEEeeeccCcc----eEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQN--LIASDQHPNIVRWYGVENDKD----FVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~--L~~~l~HpNIVrl~g~~~~~~----~~yLVmE~  482 (549)
                      .++.++||+|.||. |+++..+++.||||++.....+.+..|-.+  +. .++|+||+++++......    ..+||+||
T Consensus       212 l~l~eli~~Grfg~-V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp-~m~h~nIl~Fi~~ekr~t~~~~eywLVt~f  289 (534)
T KOG3653|consen  212 LQLLELIGRGRFGC-VWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLP-GMKHENILQFIGAEKRGTADRMEYWLVTEF  289 (534)
T ss_pred             hhhHHHhhcCccce-eehhhccCceeEEEecCHHHHHHHHhHHHHHhcc-CccchhHHHhhchhccCCccccceeEEeee
Confidence            56678999999997 566778889999999998877777766543  33 559999999999987655    79999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc---------eeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS---------VKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~---------~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      .+ |+|.+||..       ..+++....+++..+   |+|||+         ..|+|||||    |+++|+..-+.+++|
T Consensus       290 h~kGsL~dyL~~-------ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGL  362 (534)
T KOG3653|consen  290 HPKGSLCDYLKA-------NTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGL  362 (534)
T ss_pred             ccCCcHHHHHHh-------ccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccce
Confidence            96 999999987       458888888888877   999993         369999999    999999999988888


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       363 Al  364 (534)
T KOG3653|consen  363 AL  364 (534)
T ss_pred             eE
Confidence            64

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.53  E-value=4.4e-16  Score=152.57  Aligned_cols=130  Identities=20%  Similarity=0.251  Sum_probs=112.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      |.-.+.||.|..+.|..+ .+.+|..+|+|+|...           ..+...+|+.+|.+...||+|+.+.++|+.+.++
T Consensus        19 y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~   98 (411)
T KOG0599|consen   19 YEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDAFV   98 (411)
T ss_pred             cChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcchh
Confidence            666789999999977664 7788999999977632           2334568898999999999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ++|+|+|+ |.|+++|..      .-.+++..++++|+|+   ++|||.++|||||||    |+|.|-+.++.+++
T Consensus        99 FlVFdl~prGELFDyLts------~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFG  168 (411)
T KOG0599|consen   99 FLVFDLMPRGELFDYLTS------KVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFG  168 (411)
T ss_pred             hhhhhhcccchHHHHhhh------heeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccc
Confidence            99999997 899999987      6679999999999999   889999999999999    88888877766654

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.53  E-value=4.3e-15  Score=148.09  Aligned_cols=133  Identities=23%  Similarity=0.263  Sum_probs=107.4

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |.+.+.||+|+||.||......+..+|+|.+....  .+.+.+|+..+.. ++||||+++++++......|++|||+. |
T Consensus         6 ~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05113           6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMK-LSHEKLVQLYGVCTKQRPIYIVTEYMSNG   84 (256)
T ss_pred             eEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhc-CCCCCeeeEEEEEccCCCcEEEEEcCCCC
Confidence            88889999999999877544445569999776432  3356788866655 499999999999999999999999997 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|.+++...     ...+++..++.++.|+   |+|||+++++|||||    |++.++.+++..+.+.+
T Consensus        85 ~l~~~i~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~  148 (256)
T cd05113          85 CLLNYLREH-----GKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSR  148 (256)
T ss_pred             cHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccce
Confidence            999998762     2358888999999999   889999999999999    78888877776665543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.52  E-value=6.7e-15  Score=155.95  Aligned_cols=120  Identities=23%  Similarity=0.268  Sum_probs=99.6

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cchhhh
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSLDDL  490 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL~~~  490 (549)
                      .+-||.|+-|. |+.++..++.||||+++.-    -..+|..|+++ +|||||.+.|+|.....+|||||||. |-|...
T Consensus       129 LeWlGSGaQGA-VF~Grl~netVAVKKV~el----kETdIKHLRkL-kH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~V  202 (904)
T KOG4721|consen  129 LEWLGSGAQGA-VFLGRLHNETVAVKKVREL----KETDIKHLRKL-KHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEV  202 (904)
T ss_pred             hhhhccCcccc-eeeeeccCceehhHHHhhh----hhhhHHHHHhc-cCcceeeEeeeecCCceeEEeeeccccccHHHH
Confidence            35799999997 5568888999999988742    23466666555 99999999999999999999999997 899999


Q ss_pred             hhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          491 IQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       491 L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      |+.      ...++......+..+|   +.|||.++|||||||    |+.-+.-.++.++
T Consensus       203 Lka------~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDF  256 (904)
T KOG4721|consen  203 LKA------GRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDF  256 (904)
T ss_pred             Hhc------cCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccc
Confidence            988      5678888888888888   999999999999999    6665555555444

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.52  E-value=5e-15  Score=146.64  Aligned_cols=128  Identities=24%  Similarity=0.260  Sum_probs=103.9

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      +.||+|+||.||.. ...+++.+|+|.+...    ....+.+|+..+.. ++||||+++++++......|+||||+. ++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQ-YSHPNIVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEcCCCCeEEEEeeccCCc
Confidence            47999999998884 5668899999976532    23457788866554 599999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++...     ...+++..++.++.|+   |.|||+++++|||||    |++.+|.++...+.+.
T Consensus        80 L~~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  141 (252)
T cd05084          80 FLTFLRTE-----GPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMS  141 (252)
T ss_pred             HHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccC
Confidence            99998751     2357888889999998   889999999999999    7888887776666543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.52  E-value=3.8e-15  Score=156.56  Aligned_cols=121  Identities=20%  Similarity=0.220  Sum_probs=104.5

Q ss_pred             ceeeeee--cccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          405 VGKLFVS--NTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       405 igk~y~~--~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +...|++  .++||.|.||+||- .++.+|+.||||+|.+.     ...+.+.|+.+|..+ .||.||.+...|+..+.+
T Consensus       560 ~stvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l-~HPGiV~le~M~ET~erv  638 (888)
T KOG4236|consen  560 ISTVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNL-HHPGIVNLECMFETPERV  638 (888)
T ss_pred             HHHHHHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhc-CCCCeeEEEEeecCCceE
Confidence            3344665  68999999998776 68899999999988864     345678899777666 999999999999999999


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      ++|||-+.|++.+.|-.    ++.+++++.....++.||   |.|||.++|+|+|||
T Consensus       639 FVVMEKl~GDMLEMILS----sEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLK  691 (888)
T KOG4236|consen  639 FVVMEKLHGDMLEMILS----SEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLK  691 (888)
T ss_pred             EEEehhhcchHHHHHHH----hhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCC
Confidence            99999999998887765    467899999999999999   889999999999999

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.52  E-value=1.5e-14  Score=150.20  Aligned_cols=136  Identities=26%  Similarity=0.207  Sum_probs=117.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |..-++||+|+||.|+-+ ...+|+.+|+|++.+..      ...++.|-++|.. .+.+.||.|-..|++.+.+++||.
T Consensus       187 F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~k-V~s~FiVslaYAfeTkd~LClVLt  265 (591)
T KOG0986|consen  187 FRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEK-VSSPFIVSLAYAFETKDALCLVLT  265 (591)
T ss_pred             eeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHH-hccCcEEEEeeeecCCCceEEEEE
Confidence            788899999999998874 67899999999887653      2245667655544 488999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhcC
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRLV  549 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd~  549 (549)
                      .|+ |||.-+|..+.    ...+++..++.++.+|   |++||+.+||.||||    |+|..||..+.+|+|+-||
T Consensus       266 lMNGGDLkfHiyn~g----~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei  337 (591)
T KOG0986|consen  266 LMNGGDLKFHIYNHG----NPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEI  337 (591)
T ss_pred             eecCCceeEEeeccC----CCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEec
Confidence            998 59988887744    4579999999999999   999999999999999    9999999999999998765

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.52  E-value=5.3e-15  Score=169.21  Aligned_cols=140  Identities=24%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             eeecccccccCCceEEEeee--ecC----chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI--YEG----RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~--~~g----~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      -++.+.||+|+||.||..-.  ..|    ..||||.+.+.    ....+.+|. .+++.++|||||+++|+|.+....+|
T Consensus       694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea-~~m~~f~HpNiv~liGv~l~~~~~~i  772 (1025)
T KOG1095|consen  694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEA-LLMSKFDHPNIVSLIGVCLDSGPPLI  772 (1025)
T ss_pred             eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHH-HHHhcCCCcceeeEEEeecCCCCcEE
Confidence            56678999999999877322  122    34899988753    344677888 45566699999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCC-cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhcC
Q 042769          479 SLERCT-CSLDDLIQTYSDSS-CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRLV  549 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~-~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd~  549 (549)
                      ++|||. |||..||++.+... ....++..+.+.++.||   +.||+++++|||||-    |++.....++.+++|+|||
T Consensus       773 ~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDi  852 (1025)
T KOG1095|consen  773 LLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDI  852 (1025)
T ss_pred             EehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhh
Confidence            999997 69999999854332 13458888899999999   999999999999998    9999999999999999996

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.52  E-value=2.2e-15  Score=157.36  Aligned_cols=140  Identities=22%  Similarity=0.245  Sum_probs=108.0

Q ss_pred             eeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-ceE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-DFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-~~~  476 (549)
                      +|++.+.||+|+||.||++.      ..+++.||||++...    ....+.+|+..+.++.+||||+++++++... ..+
T Consensus         8 ~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~   87 (343)
T cd05103           8 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL   87 (343)
T ss_pred             HhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCce
Confidence            48899999999999988742      345789999988642    2335678998887776899999999987654 468


Q ss_pred             EEEecccc-cchhhhhhhcccCC---------------------------------------------------------
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSS---------------------------------------------------------  498 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~---------------------------------------------------------  498 (549)
                      +++||||. |+|.++++......                                                         
T Consensus        88 ~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (343)
T cd05103          88 MVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAE  167 (343)
T ss_pred             EEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhh
Confidence            99999997 69999987532100                                                         


Q ss_pred             ----cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          499 ----CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       499 ----~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                          ....++...+..++.|+   |+|||+++|+|||||    |++.++.+++..+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~  227 (343)
T cd05103         168 QEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLAR  227 (343)
T ss_pred             hhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEeccccc
Confidence                01235667778888888   889999999999999    88888888777766554

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.52  E-value=3.1e-15  Score=149.37  Aligned_cols=132  Identities=21%  Similarity=0.252  Sum_probs=108.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||.||+. ...+++.||+|++...   ......+|+..+. .++||||+++++++...+..|+||||+
T Consensus        10 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~-~~~h~~ii~~~~~~~~~~~~~iv~e~~   88 (267)
T cd06646          10 DYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVK-ECKHCNIVAYFGSYLSREKLWICMEYC   88 (267)
T ss_pred             hcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHH-hcCCCCeeeeeEEEEeCCEEEEEEeCC
Confidence            3899999999999998874 5677899999977532   2234567886554 459999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + ++|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.++...+.+.
T Consensus        89 ~~~~L~~~~~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~  153 (267)
T cd06646          89 GGGSLQDIYHV------TGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVA  153 (267)
T ss_pred             CCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccc
Confidence            8 599999876      4568889999999998   899999999999999    7888887776665543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.52  E-value=1.1e-15  Score=151.33  Aligned_cols=131  Identities=26%  Similarity=0.405  Sum_probs=108.7

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||+||. ....+++.||+|++....     .....+|+..+..+ +||||+++++++......+++||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRL-RHPNIVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHH-TBTTBCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccc-cccccccccccccccccccccccc
Confidence            67889999999999888 466778899999766431     11234577666666 999999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+ +|.+++..      ...+++..+..++.|+   |.+||+++++|||||    |++.+|......+.+.
T Consensus        80 ~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~  145 (260)
T PF00069_consen   80 CPGGSLQDYLQK------NKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSS  145 (260)
T ss_dssp             ETTEBHHHHHHH------HSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTT
T ss_pred             cccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            986 99999985      4668999999999999   889999999999999    7888888776666654

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.52  E-value=5.4e-15  Score=149.50  Aligned_cols=135  Identities=23%  Similarity=0.234  Sum_probs=107.7

Q ss_pred             eeeeecccccccCCceEEEe-----eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~  475 (549)
                      +.|++.+.||+|+||.||.+     +..+++.||+|.+...    ....+.+|+..+.. ++||||+++++++...  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRN-LYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHh-CCCCCeeeeeeEEecCCCCc
Confidence            34788899999999998764     2456889999987632    23456788876655 4999999999998775  56


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+++|||++ ++|.+++.+.     ...+++..+..++.|+   |+|||+++++|||||    |++.+|..+...+.+.+
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~  157 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRN-----KNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK  157 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCcccc
Confidence            899999997 5999998762     2357888999999998   899999999999999    77888887776666554

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.51  E-value=5.1e-15  Score=147.25  Aligned_cols=133  Identities=22%  Similarity=0.242  Sum_probs=108.2

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||.||.....++..+|+|.+.+.  ....+.+|+..+..+ +||||+++++++...+..|++|||++ +
T Consensus         6 ~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05059           6 LTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKL-SHPNLVQLYGVCTKQRPIFIVTEYMANG   84 (256)
T ss_pred             cchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEEEcCCCceEEEEecCCCC
Confidence            7888999999999988754345678999987643  123566788666554 99999999999999999999999997 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|.+++...     ...+++..+..++.|+   |.|||+++++|||||    +++.+|.++...+.+.+
T Consensus        85 ~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~  148 (256)
T cd05059          85 CLLNYLRER-----KGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLAR  148 (256)
T ss_pred             CHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccce
Confidence            999998762     2357888889999998   889999999999999    78888887777766554

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.51  E-value=7.9e-15  Score=145.98  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.++||+|+||.||+....+++.||+|.+...  ..+.+.+|+..+.. ++|+||+++++++...+..+++|||+. 
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   85 (261)
T cd05072           7 SIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKT-LQHDKLVRLYAVVTKEEPIYIITEYMAK   85 (261)
T ss_pred             HeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCCcEEEEecCCC
Confidence            38999999999999988865556778999977642  23456678866554 599999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.++++...    ...+++..+..++.|+   |+|||+++++|||||    |++.+|.+....+.+.+
T Consensus        86 ~~L~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~  151 (261)
T cd05072          86 GSLLDFLKSDE----GGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLAR  151 (261)
T ss_pred             CcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccce
Confidence            69999997632    3457778888888888   899999999999999    78888877766665543

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.51  E-value=4.8e-15  Score=155.92  Aligned_cols=133  Identities=26%  Similarity=0.315  Sum_probs=107.5

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc------
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK------  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~------  473 (549)
                      .+.|.+.+.||+|+||.||.+ +..+++.||||++...     ......+|+..+ +.++||||+++++++...      
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM-KCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHH-HhcCCCCccccceeeccccccccc
Confidence            345999999999999998874 5677899999988642     233566788555 555999999999987543      


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ...|+||||+.++|.+++..        .+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+++.
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a  173 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA  173 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCc
Confidence            35799999999998888754        36778888899998   889999999999999    8889998888777766


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       174 ~  174 (364)
T cd07875         174 R  174 (364)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.51  E-value=2.9e-15  Score=150.95  Aligned_cols=133  Identities=26%  Similarity=0.294  Sum_probs=110.0

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.||. ....+|+.||+|++....     .....+|+..+.. ++||||+++++++.+....|+++||
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHh-cCCCCeeeHHHHhccCCceEEEEec
Confidence            78889999999999887 466679999999876431     2245678866554 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +.++|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    +++.+|...+..+.+.+
T Consensus        81 ~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~  147 (284)
T cd07839          81 CDQDLKKYFDSC-----NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLAR  147 (284)
T ss_pred             CCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhh
Confidence            999999888652     3468999999999999   889999999999999    78888887777666544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.51  E-value=6.1e-15  Score=146.62  Aligned_cols=131  Identities=22%  Similarity=0.243  Sum_probs=108.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.+.||+|+||.||.. +..+++.||+|.+...        ....+.+|+..+.+ ++||||+++++++...+..+++
T Consensus         4 ~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~v   82 (263)
T cd06625           4 WRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKN-LQHERIVQYYGCLRDDETLSIF   82 (263)
T ss_pred             ccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHh-CCCCCeeeeEEEEccCCeEEEE
Confidence            888899999999998874 5677899999965421        12345678865555 5999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||++ ++|.+++..      ...+++..+..++.|+   |.|||+.+++||||+    +++.+|.+....+++.
T Consensus        83 ~e~~~~~~l~~~~~~------~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~  151 (263)
T cd06625          83 MEYMPGGSVKDQLKA------YGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGAS  151 (263)
T ss_pred             EEECCCCcHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccc
Confidence            99997 599999877      4468888899999998   889999999999999    8888888777766654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.51  E-value=7.3e-15  Score=147.06  Aligned_cols=133  Identities=23%  Similarity=0.202  Sum_probs=105.7

Q ss_pred             eeecccccccCCceEEEe-eeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |++.+.||+|+||.||+. ...++   ..+|+|.+...    ....+.+|+..+..+ +||||+++++++...+..|++|
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   84 (267)
T cd05066           6 IKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQF-DHPNIIHLEGVVTKSKPVMIVT   84 (267)
T ss_pred             eEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEecCCccEEEE
Confidence            888899999999998874 33333   36888877532    233567788666554 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||++ |+|.+++...     ...++...+..++.|+   |.|||+++++|||||    |++.++.+.+..+.+.+
T Consensus        85 e~~~~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~  154 (267)
T cd05066          85 EYMENGSLDAFLRKH-----DGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSR  154 (267)
T ss_pred             EcCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccc
Confidence            9997 5999999762     2457888889999888   889999999999999    78888877776665443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.51  E-value=6.8e-15  Score=161.78  Aligned_cols=139  Identities=23%  Similarity=0.274  Sum_probs=110.6

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----  474 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----  474 (549)
                      ++.|.+.+.||+|+||+||++ ...+|+.||||++...     ....+.+|+..+..+ +|+||++++..+...+     
T Consensus        31 ~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~-~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         31 AKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNC-DFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             CCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcC-CCCcEEEeecceecccccCcc
Confidence            345999999999999998884 6678999999987542     233466788666554 9999999988765332     


Q ss_pred             ---eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          475 ---FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       475 ---~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                         .+++||||++ |+|.++++...  .....+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~--~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DF  187 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRA--KTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDF  187 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEec
Confidence               4789999997 69999997632  123468899999999999   889999999999999    8899998888877


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      ++.|
T Consensus       188 Gls~  191 (496)
T PTZ00283        188 GFSK  191 (496)
T ss_pred             ccCe
Confidence            7654

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.51  E-value=8.5e-15  Score=146.08  Aligned_cols=132  Identities=20%  Similarity=0.231  Sum_probs=108.1

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH---------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA---------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~---------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |...+.||+|+||.||.....+++.+|+|.+...         ....+.+|++.+..+ +|+||+++++++...+..+++
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL-KHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhc-CCCCEeeEeeEeecCCeEEEE
Confidence            6778899999999988755567889999966521         123466788666555 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+. ++|.+++.+      ...+++..+..++.|+   |+|||+.+|+|+||+    +++++|.++...+.+++
T Consensus        81 ~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  150 (265)
T cd06631          81 MEFVPGGSISSILNR------FGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCAR  150 (265)
T ss_pred             EecCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhH
Confidence            99997 499999976      4568888999999998   889999999999999    78888887777665543

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.51  E-value=3.6e-15  Score=151.50  Aligned_cols=133  Identities=25%  Similarity=0.281  Sum_probs=108.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHHh--------hhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH--------DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~--------~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.+.||+|+||.||+. ...+++.||||++.....        ..+..|+..+.+ ++|+||+++++++.+.+..|+|
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQE-LKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhh-cCCCCChhhhheeecCCEEEEE
Confidence            778889999999998884 556789999998764321        234567765544 4899999999999999999999


Q ss_pred             ecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+.|+|.+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.+|...+..+.+.+
T Consensus        81 ~e~~~~~L~~~i~~~-----~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~  150 (298)
T cd07841          81 FEFMETDLEKVIKDK-----SIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLAR  150 (298)
T ss_pred             EcccCCCHHHHHhcc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeee
Confidence            999977999999761     1268899999999999   889999999999999    88888887776655543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.50  E-value=4.7e-15  Score=170.25  Aligned_cols=138  Identities=22%  Similarity=0.188  Sum_probs=109.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||.||.+ +..+|+.||+|++...      ..+++.+|+..+.. ++||||+++++++.+.+..|++||
T Consensus         4 YeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~-L~HPNIVkl~~v~~d~~~lyLVME   82 (932)
T PRK13184          4 YDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAAD-LIHPGIVPVYSICSDGDPVYYTMP   82 (932)
T ss_pred             eEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHh-CCCcCcCeEEEEEeeCCEEEEEEE
Confidence            899999999999998884 6677999999987642      23356788866554 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccC-----CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDS-----SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~-----~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++......     .....++...+..++.|+   |+|||+++|+|||||    |++.+|.+.+.++++.+
T Consensus        83 Y~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         83 YIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             cCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence            998 5999998752110     011234455677888888   889999999999999    88999988877776654

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.50  E-value=6e-15  Score=154.02  Aligned_cols=141  Identities=21%  Similarity=0.227  Sum_probs=108.5

Q ss_pred             eeeeecccccccCCceEEEe------eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE------GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~------~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~  475 (549)
                      ++|++.+.||+|+||.||.+      +..+++.||+|++...    ..+.+.+|+..+.++.+|+||++++++|.. ...
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            35899999999999998874      2234688999987632    234566888777776689999999998764 456


Q ss_pred             EEEEecccc-cchhhhhhhcccC-------------------------------------------------------Cc
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDS-------------------------------------------------------SC  499 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~-------------------------------------------------------~~  499 (549)
                      ++++|||+. |+|.+++......                                                       ..
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            899999998 5999998653210                                                       00


Q ss_pred             ccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          500 NSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       500 ~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ...+++..+..++.|+   |+|||+++|+|||||    |++.++..++..+.+++
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~  221 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLAR  221 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccch
Confidence            1257778888899998   899999999999999    88888887777766665

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.50  E-value=1.2e-14  Score=148.64  Aligned_cols=142  Identities=20%  Similarity=0.201  Sum_probs=109.4

Q ss_pred             eeeeeecccccccCCceEEEee-e-------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEG-I-------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~-~-------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.|.+.+.||+|+||.||... .       .++..||+|.+...    ....+.+|+..+..+.+||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            3448899999999999988642 1       23457999987642    2335668886665554899999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      ...|++|||+. |+|.+++...+...          ....++...+..++.|+   |+|||+++++|||||    |++.+
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~  173 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTEN  173 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCC
Confidence            99999999997 69999998743211          12346677788888888   899999999999999    78888


Q ss_pred             CCCchhhhhhhh
Q 042769          536 GHPSPLLLSLMR  547 (549)
Q Consensus       536 G~p~~~l~~Lmr  547 (549)
                      |.+++..+.+.+
T Consensus       174 ~~~kl~D~g~~~  185 (304)
T cd05101         174 NVMKIADFGLAR  185 (304)
T ss_pred             CcEEECCCccce
Confidence            887777766554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.50  E-value=8.5e-15  Score=162.10  Aligned_cols=137  Identities=23%  Similarity=0.299  Sum_probs=117.2

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----cceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVEND-----KDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----~~~~yLV  479 (549)
                      .|++.++||+|.+|.||+ +++.+++..|+|++...  ..+....|..+|+....|||++.+||+|..     ++.+|||
T Consensus        20 ~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLV   99 (953)
T KOG0587|consen   20 IFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLV   99 (953)
T ss_pred             ccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEE
Confidence            388999999999999988 68899999999988753  333455667678888899999999999863     5679999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||. |+.-++++...    ...+.|.++..|++.+   |.+||.+.+||||+|    |+..+|..+.+.+.+.++
T Consensus       100 MEfC~gGSVTDLVKn~~----g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQ  172 (953)
T KOG0587|consen  100 MEFCGGGSVTDLVKNTK----GNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ  172 (953)
T ss_pred             eeccCCccHHHHHhhhc----ccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeee
Confidence            99998 69999998855    5679999999999988   889999999999999    899999999988877654

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.50  E-value=8e-15  Score=148.66  Aligned_cols=134  Identities=19%  Similarity=0.178  Sum_probs=108.5

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHHh----hhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH----DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~----~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|.+.+.||+|+||.||.+ ...+|+.||+|++.....    ....+|+..+.. ++|+||+++++++...+..|+||||
T Consensus         6 ~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07870           6 SYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKG-LKHANIVLLHDIIHTKETLTFVFEY   84 (291)
T ss_pred             eeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHh-cCCCCEeEEEEEEecCCeEEEEEec
Confidence            4999999999999998874 567789999998864321    135678866555 5999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +.++|.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+.+..+++.+
T Consensus        85 ~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  151 (291)
T cd07870          85 MHTDLAQYMIQH-----PGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLAR  151 (291)
T ss_pred             ccCCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEecccccc
Confidence            998888877651     2346777888888888   889999999999999    78888887777666543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.50  E-value=8.5e-15  Score=147.41  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=110.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |+..+.||.|++|.||.+ ...+|+.||||.+....    .....+|+..+..+ +||||+++++++...+..++||||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           2 FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKEL-KHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             ceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhh-cCCCEeeeeeeEeeCCcEEEEEecC
Confidence            788899999999998884 55678999999776431    23456788666554 9999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|+|.+++....   ....+++..+..++.|+   |+|||+++++|||||    +++.+|......+.+++
T Consensus        81 ~~~l~~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~  148 (284)
T cd07836          81 DKDLKKYMDTHG---VRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLAR  148 (284)
T ss_pred             CccHHHHHHhcC---CCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhh
Confidence            999999887632   12458899999999999   889999999999999    78888877766665543

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.50  E-value=1e-14  Score=146.00  Aligned_cols=133  Identities=23%  Similarity=0.210  Sum_probs=101.5

Q ss_pred             ccccccCCceEEEeeee---cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYEGIY---EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~---~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ++||+|+||.||+....   ....+|+|.+...    ....+.+|+..+. .++||||+++++.+......|+||||+. 
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~-~l~h~nii~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYR-ELNHPNVLQCLGQCIESIPYLLVLEFCPL   79 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHH-hCCCCCcceEEEEECCCCceEEEEEeCCC
Confidence            36999999998874322   3456888876533    1234567886554 4599999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++...+.. .....++..+..++.|+   |+|||+++|+|||||    |++.++.+++..+.+.+
T Consensus        80 g~L~~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~  148 (269)
T cd05042          80 GDLKNYLRSNRGM-VAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLAL  148 (269)
T ss_pred             CcHHHHHHhcccc-ccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEecccccc
Confidence            6999999874311 11234567778888888   899999999999999    88888888777766543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.50  E-value=8.5e-15  Score=156.80  Aligned_cols=139  Identities=21%  Similarity=0.188  Sum_probs=106.1

Q ss_pred             eeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |.+.+.||+|+||.||.+.      ...++.||+|++...    ..+.+.+|+..|.++..|||||+++++|...+..++
T Consensus        39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~i  118 (401)
T cd05107          39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYI  118 (401)
T ss_pred             eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEE
Confidence            7788999999999988742      234568999988743    123566888777666459999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC------------------------------------------------------------
Q 042769          479 SLERCT-CSLDDLIQTYSDS------------------------------------------------------------  497 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~------------------------------------------------------------  497 (549)
                      |||||. |+|.++++..+..                                                            
T Consensus       119 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (401)
T cd05107         119 ITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGT  198 (401)
T ss_pred             EEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhh
Confidence            999997 6999999764310                                                            


Q ss_pred             --------------------------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          498 --------------------------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       498 --------------------------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                                                      .....+++..+..++.|+   |+|||+++++|||||    |++.++.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~  278 (401)
T cd05107         199 VKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLV  278 (401)
T ss_pred             hhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEE
Confidence                                            011234555667788888   889999999999999    77877777


Q ss_pred             chhhhhhhh
Q 042769          539 SPLLLSLMR  547 (549)
Q Consensus       539 ~~~l~~Lmr  547 (549)
                      +...+.+.+
T Consensus       279 kL~DfGla~  287 (401)
T cd05107         279 KICDFGLAR  287 (401)
T ss_pred             EEEecCcce
Confidence            776666543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.50  E-value=1.2e-14  Score=144.95  Aligned_cols=135  Identities=21%  Similarity=0.300  Sum_probs=108.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.. ...+++.||||.+..      .....+.+|+..+..+ +||||+++++++...+..+++||
T Consensus         4 ~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e   82 (267)
T cd08228           4 FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQL-NHPNVIKYLDSFIEDNELNIVLE   82 (267)
T ss_pred             eeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhC-CCcceeeeeeeEEECCeEEEEEE
Confidence            899999999999998874 567899999996542      1223456788665554 99999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+. |+|.+++.....  ....+++..+..++.|+   |.|||+++++|||||    |++.+|.+....+++.
T Consensus        83 ~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~  153 (267)
T cd08228          83 LADAGDLSQMIKYFKK--QKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             ecCCCcHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccc
Confidence            998 599988865321  12457888889999998   899999999999999    7888888777666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.50  E-value=1.3e-14  Score=146.39  Aligned_cols=134  Identities=25%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             eeeecccccccCCceEEEe-----eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~y  477 (549)
                      .|++.+.||+|+||.||..     +..+++.||+|++...   ....+.+|++.+.. ++||||+++++++..  ....+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           5 HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKS-LQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             cceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCCeeEEEEEEccCCCCceE
Confidence            4888899999999998873     2346889999987643   23356688876655 499999999998643  34689


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||||++ |+|.+++...     ...+++..+..++.|+   |+|||+++++|||||    |++.+|.++...+.+.+
T Consensus        84 lv~e~~~~~~L~~~l~~~-----~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~  156 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKH-----RERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTK  156 (284)
T ss_pred             EEEEecCCCCHHHHHHhc-----CcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccc
Confidence            9999997 6999999762     2357888899999998   899999999999999    88888888777666544

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.49  E-value=9e-15  Score=146.89  Aligned_cols=133  Identities=22%  Similarity=0.232  Sum_probs=107.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVmE  481 (549)
                      |++.+.||+|+||.||+. ...+++.||+|++....    .....+|+..+.++.+||||+++++++.+.  +..++|||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            567789999999998874 56678999999887532    123346887777776799999999999987  88999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++|+|.+++...     ...+++..++.++.|+   |+|||+++++|||||    +++. |..+...+.+.+
T Consensus        81 ~~~~~l~~~l~~~-----~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~  147 (282)
T cd07831          81 LMDMNLYELIKGR-----KRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCR  147 (282)
T ss_pred             cCCccHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEeccccc
Confidence            9999999888762     2468899999999998   889999999999999    6666 777666655543

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.49  E-value=1.9e-14  Score=144.05  Aligned_cols=131  Identities=26%  Similarity=0.322  Sum_probs=106.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-------------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-------------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-------------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      |...+.||.|+||.||.. ...+|+.+|+|.+...             ..+.+.+|+..+ +.++||||+++++++...+
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETL-KDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHH-HhcCCCCcceEEEEeccCC
Confidence            778889999999998874 5567899999976421             112345677555 4559999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..++||||+. |+|.++++.      .+.+++..+..++.|+   |.|||+++++||||+    +++.+|.+....+.+.
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~  155 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRT------YGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGIS  155 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccc
Confidence            9999999997 599999977      3568888899998888   889999999999999    7788887776655543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.4e-14  Score=164.87  Aligned_cols=133  Identities=27%  Similarity=0.377  Sum_probs=106.4

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeec-------------
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVE-------------  470 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~-------------  470 (549)
                      |+....||+|+||.||+ +++.+|+.||||+|.-.    ......+|+..| +.++||||||+|..+             
T Consensus       481 FEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~L-ArLnHpNVVRYysAWVEs~~~~~~~ei~  559 (1351)
T KOG1035|consen  481 FEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLL-ARLNHPNVVRYYSAWVESTAELTVLEIV  559 (1351)
T ss_pred             hHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhccCCcccccccc
Confidence            88899999999999999 69999999999998843    233577899555 556999999999750             


Q ss_pred             --------------------------------------------------------------------------------
Q 042769          471 --------------------------------------------------------------------------------  470 (549)
Q Consensus       471 --------------------------------------------------------------------------------  470 (549)
                                                                                                      
T Consensus       560 ~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e~~  639 (1351)
T KOG1035|consen  560 ASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSEGS  639 (1351)
T ss_pred             ccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccCCc
Confidence                                                                                            


Q ss_pred             -------------------cC-------cceEEEEeccccc-chhhhhhhcccCCccccc-CchhhhHHhhhe---eecc
Q 042769          471 -------------------ND-------KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVF-GEDQATRAMIEY---KLRL  519 (549)
Q Consensus       471 -------------------~~-------~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l-~~~~~~~i~~qi---L~yL  519 (549)
                                         ..       ...+||-||||+- .|.+++++      +... ....++++++||   |.|+
T Consensus       640 ~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~------N~~~~~~d~~wrLFreIlEGLaYI  713 (1351)
T KOG1035|consen  640 VILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRR------NHFNSQRDEAWRLFREILEGLAYI  713 (1351)
T ss_pred             cccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHh------cccchhhHHHHHHHHHHHHHHHHH
Confidence                               00       0247999999986 66666665      2222 467889999999   8899


Q ss_pred             cceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          520 DSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       520 H~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |++||||||||    +++++++.++=.++|+.|
T Consensus       714 H~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  714 HDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             HhCceeeccCCcceeEEcCCCCeeecccccchh
Confidence            99999999999    789998888888888765

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.49  E-value=8.7e-15  Score=146.16  Aligned_cols=134  Identities=22%  Similarity=0.170  Sum_probs=109.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      |.+.+.||+|+||.||+. ...+++.||+|++....  ...+.+|+..+.. ++||||+++++++......+++|||++ 
T Consensus         8 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (263)
T cd05052           8 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKE-IKHPNLVQLLGVCTREPPFYIITEFMTY   86 (263)
T ss_pred             eEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHh-CCCCChhheEEEEcCCCCcEEEEEeCCC
Confidence            788899999999998774 45668899999876432  2356778866655 499999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|.+++....    ...+++..++.++.|+   |+|||+++++|||||    |++.++.+.+..+.+++
T Consensus        87 ~~L~~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~  152 (263)
T cd05052          87 GNLLDYLRECN----RQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             CcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcccc
Confidence            69999987632    3457888888899998   899999999999999    78888887777666543

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.49  E-value=6.8e-15  Score=146.68  Aligned_cols=122  Identities=20%  Similarity=0.310  Sum_probs=101.8

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH---------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA---------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~---------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |+..+.||+|+||.||. .+..+++.||+|.+...         ....+.+|+..+.. ++|+||+++++++...+..++
T Consensus         2 ~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           2 WLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMAR-LNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             ccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHH-cCCCceehhhceeccCCeEEE
Confidence            67788999999999887 46678999999977632         13456678866655 599999999999999999999


Q ss_pred             Eeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          479 SLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       479 VmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +|||+.| +|.+++..      ...+++..+..++.|+   |.|||+++++|||||    +++.+|.
T Consensus        81 v~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~  141 (268)
T cd06630          81 FVEWMAGGSVSHLLSK------YGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQ  141 (268)
T ss_pred             EEeccCCCcHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCC
Confidence            9999985 99999976      4568889999999999   889999999999999    6666654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.49  E-value=1.2e-14  Score=149.04  Aligned_cols=138  Identities=22%  Similarity=0.242  Sum_probs=108.6

Q ss_pred             eeecccccccCCceEEEe-eeecCc--hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGR--PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~--~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||++ ...++.  .+|+|.+...    ....+.+|+..+.++.+||||+++++++...+..|++||
T Consensus         9 ~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e   88 (303)
T cd05088           9 IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIE   88 (303)
T ss_pred             ceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEE
Confidence            888899999999998885 444554  4577765532    233566788777776689999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          482 RCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      |++ |+|.++++.....          .....+++..++.++.|+   |+|||+++++|||||    |++.++.+++..+
T Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~df  168 (303)
T cd05088          89 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADF  168 (303)
T ss_pred             eCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCcc
Confidence            997 6999999763311          112357888899999998   899999999999999    8888888877766


Q ss_pred             hhh
Q 042769          544 SLM  546 (549)
Q Consensus       544 ~Lm  546 (549)
                      .+.
T Consensus       169 g~~  171 (303)
T cd05088         169 GLS  171 (303)
T ss_pred             ccC
Confidence            654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.49  E-value=1.8e-14  Score=157.58  Aligned_cols=133  Identities=23%  Similarity=0.206  Sum_probs=111.7

Q ss_pred             eeecccccccCCceEEEeee----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYEGI----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ..+.++||.|.||.|+...+    .....||||.++..    ....++.|..+| -..+||||++|.|+......+.||.
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM-GQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM-GQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc-ccCCCCcEEEEEEEEecCceeEEEh
Confidence            45567999999999887433    22467999999853    233567787555 4459999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+ |+|+.||+.+     .+.++..+...+++.|   ++||-++++|||||-    |+++|=-++..+++|.|
T Consensus       710 EyMENGsLDsFLR~~-----DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSR  779 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQN-----DGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSR  779 (996)
T ss_pred             hhhhCCcHHHHHhhc-----CCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEecccccee
Confidence            9996 9999999983     4668889999999998   999999999999998    99999999999999887

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.49  E-value=5.3e-15  Score=147.76  Aligned_cols=132  Identities=24%  Similarity=0.309  Sum_probs=107.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|.+.+.||+|+||.||.. ...+++.||+|.+...   ......+|+..+ +.++||||+++++++...+..|++||||
T Consensus        10 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~-~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645          10 DFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMM-KDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHH-HhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            3888899999999998874 5567899999976532   223456787554 4459999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + ++|.+++..      .+.+++..++.++.|+   |.|||+++++|||||    +++.+|......+++.
T Consensus        89 ~~~~L~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~  153 (267)
T cd06645          89 GGGSLQDIYHV------TGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVS  153 (267)
T ss_pred             CCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceee
Confidence            8 599999876      4568999999999998   889999999999999    7788887666655543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.49  E-value=5.9e-15  Score=146.64  Aligned_cols=132  Identities=22%  Similarity=0.211  Sum_probs=110.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||.|+||.||.. ...+++.||+|.+.+.      ....+.+|++.+.. ++||||+++++++......|++||
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQE-LNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             ceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHh-CCCCChHHHHHhhcCCCeEEEEEe
Confidence            788899999999998884 5567899999977643      23456678866554 599999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+.| +|.+++..      ...+++..+..++.|+   |.|||+++++|+||+    +++++|.+....+.+++
T Consensus        81 ~~~~~~L~~~l~~------~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~  148 (258)
T cd05578          81 LLLGGDLRYHLSQ------KVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIAT  148 (258)
T ss_pred             CCCCCCHHHHHHh------cCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeeccccc
Confidence            9975 99999977      3468889999999999   889999999999999    88888888777666553

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.49  E-value=1.6e-14  Score=148.80  Aligned_cols=133  Identities=25%  Similarity=0.270  Sum_probs=104.2

Q ss_pred             eeeecccccccCCceEEEe-eeecCc----hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|+..+.||+|+||.||+. ...+++    .||+|.+...    ..+.+.+|+..+ +.++||||+++++++... ..++
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM-ASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCCCeEEEEEcCC-Ccee
Confidence            3899999999999998874 333444    4899987632    234566777554 555999999999999865 5678


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++||+. |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.++.+++..+++.+
T Consensus        86 v~e~~~~g~l~~~l~~~-----~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~  157 (316)
T cd05108          86 ITQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             eeecCCCCCHHHHHHhc-----cccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccc
Confidence            999997 7999999862     2357788888899998   899999999999999    88888888777776654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.49  E-value=1.6e-14  Score=144.22  Aligned_cols=132  Identities=21%  Similarity=0.229  Sum_probs=106.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~y  477 (549)
                      |.+.+.||+|+||.||.. ...+++.||+|.+...        ....+.+|++.+.++ +||||+++++++.+.  ..++
T Consensus         4 ~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   82 (265)
T cd06652           4 WRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL-LHERIVQYYGCLRDPMERTLS   82 (265)
T ss_pred             ceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhc-CCCCeeeEEeEeccCCCceEE
Confidence            888899999999998873 5677899999976421        123456788666555 999999999988763  4688


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|||++ |+|.+++..      ...+++..+..++.|+   |+|||+++++|||||    |++.+|.++...+.+.+
T Consensus        83 ~v~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~  154 (265)
T cd06652          83 IFMEHMPGGSIKDQLKS------YGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASK  154 (265)
T ss_pred             EEEEecCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCcccc
Confidence            9999997 599999876      3457888889999988   899999999999999    88888888877766543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.49  E-value=8.3e-15  Score=147.47  Aligned_cols=133  Identities=24%  Similarity=0.289  Sum_probs=107.2

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|+..+.||+|+||.||+. ...+|+.||+|++....     .+.+.+|+..+.. ++||||+++++++......+++||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQ-LKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHh-CCCCCEeeeeeEEeeCCEEEEEEe
Confidence            3888999999999998874 55678999999775431     2235678866555 599999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+++ .|..++..      ...+++..++.++.|+   |+|||+++++|||||    +++.+|..++..+.+.+
T Consensus        81 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~  148 (286)
T cd07847          81 YCDHTVLNELEKN------PRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFAR  148 (286)
T ss_pred             ccCccHHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccce
Confidence            9986 56555544      3458899999999999   899999999999999    78888887777666543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.49  E-value=9.4e-15  Score=145.61  Aligned_cols=135  Identities=21%  Similarity=0.182  Sum_probs=109.7

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||+.....++.||+|.+....  .+.+.+|+..+.++ +||||+++++++...+..|++|||+. 
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~   85 (261)
T cd05068           7 SIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKL-RHPKLIQLYAVCTLEEPIYIVTELMKY   85 (261)
T ss_pred             heeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHC-CCCCccceeEEEecCCCeeeeeecccC
Confidence            388899999999999887544456789999876432  33566788666555 89999999999999999999999996 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|.+++....    ...+++..+..++.|+   |.|||+++++|||||    |++.+|.+....+.+.+
T Consensus        86 ~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  151 (261)
T cd05068          86 GSLLEYLQGGA----GRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLAR  151 (261)
T ss_pred             CcHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEE
Confidence            69999997622    2457888899999998   889999999999999    88888887777666543

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.49  E-value=1.9e-14  Score=147.38  Aligned_cols=139  Identities=21%  Similarity=0.206  Sum_probs=107.8

Q ss_pred             eeeecccccccCCceEEEe-ee-------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .|.+.+.||+|+||.||.. ..       .+...+|+|.+...    ....+.+|+..+..+.+||||+++++++...+.
T Consensus        19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~   98 (307)
T cd05098          19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP   98 (307)
T ss_pred             HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCc
Confidence            4999999999999998863 22       12356999988742    223466788766666589999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      .|++|||+. |+|.+++..++...          ....++...++.++.|+   |+|||+++++|||||    |++.+|.
T Consensus        99 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~  178 (307)
T cd05098          99 LYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNV  178 (307)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCc
Confidence            999999997 69999998743211          11347778888999998   899999999999999    7888887


Q ss_pred             Cchhhhhhh
Q 042769          538 PSPLLLSLM  546 (549)
Q Consensus       538 p~~~l~~Lm  546 (549)
                      ..+..+.+.
T Consensus       179 ~kL~dfg~a  187 (307)
T cd05098         179 MKIADFGLA  187 (307)
T ss_pred             EEECCCccc
Confidence            766655544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.49  E-value=9.2e-15  Score=145.00  Aligned_cols=134  Identities=20%  Similarity=0.284  Sum_probs=108.5

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||. .+..+++.+|+|.+..    ...+...+|+..+ +.++||||+++++++...+..|++|||+
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           2 YNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLL-AKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             ceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHH-HhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            78889999999999887 4667889999996642    1234566777555 4559999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      + |+|.+++....    ...+++..+..++.|+   |.|||+++|+|+|||    |++.+|......+.+++
T Consensus        81 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~  148 (255)
T cd08219          81 DGGDLMQKIKLQR----GKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSAR  148 (255)
T ss_pred             CCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcce
Confidence            7 59999887522    3457888999999999   899999999999999    78888877766665543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.49  E-value=1.4e-14  Score=146.84  Aligned_cols=132  Identities=22%  Similarity=0.173  Sum_probs=108.2

Q ss_pred             eeecccccccCCceEEEee----eecCchhHHHHHHHHH-------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG----IYEGRPVAVKRLVRAL-------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~----~~~g~~VAVK~i~~~~-------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      |++.+.||+|+||.||...    ..+|+.||+|++....       .+...+|+..+..+.+|+||+++++++..+...|
T Consensus         2 y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613           2 FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             ceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEE
Confidence            7788999999999988742    2478899999876431       2345678876766657999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +||||++ ++|.+++..      ...+++..+..++.|+   |.|||+.+++|||||    |++.+|.+.+..+.+.
T Consensus        82 lv~e~~~~~~L~~~l~~------~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~  152 (290)
T cd05613          82 LILDYINGGELFTHLSQ------RERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS  152 (290)
T ss_pred             EEEecCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccc
Confidence            9999998 599999976      4568888888888888   899999999999999    8888888777666554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.49  E-value=6.5e-15  Score=147.44  Aligned_cols=132  Identities=31%  Similarity=0.401  Sum_probs=105.1

Q ss_pred             ecccccccCCceEEEeeee-----cCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          411 SNTEIAKGSNGTVVYEGIY-----EGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~~~~-----~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.+.||.|+||.|+.+...     .+..|+||.++.    +..+.+.+|++.+.++ +||||++++|++...+..++|||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~g~~~~~~~~~lv~e   81 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL-RHPNIVKLYGFCIENEPLFLVME   81 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH-SBTTBE-EEEEEESSSSEEEEEE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccc-ccccccccccccccccccccccc
Confidence            4578999999998874332     367899998853    2245677888777666 99999999999998888999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.++|....    ...+++.....++.|+   |.|||+++++|+||+    |++.++.+++..+.+++
T Consensus        82 ~~~~g~L~~~L~~~~----~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~  151 (259)
T PF07714_consen   82 YCPGGSLDDYLKSKN----KEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSR  151 (259)
T ss_dssp             --TTEBHHHHHHHTC----TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGE
T ss_pred             ccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            997 79999999831    3568889999999999   899999999999999    78999988877776665

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.49  E-value=1.4e-14  Score=146.22  Aligned_cols=131  Identities=26%  Similarity=0.181  Sum_probs=104.5

Q ss_pred             eeecccccccCCceEEEe-----eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~y  477 (549)
                      |+..+.||+|+||+||..     ...+++.||+|.+...    ....+.+|++.+.++ +||||+++++++..  ....+
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   84 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL-YHENIVKYKGCCSEQGGKGLQ   84 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCCceEE
Confidence            488899999999998652     2346788999987643    233566788766554 99999999998765  34689


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|||++ |+|.+++..       ..+++.+++.++.|+   |.|||+++|+|||||    |++.++.+....+++.+
T Consensus        85 lv~e~~~~~~l~~~~~~-------~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~  155 (283)
T cd05080          85 LIMEYVPLGSLRDYLPK-------HKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  155 (283)
T ss_pred             EEecCCCCCCHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeeccccc
Confidence            9999998 599999876       348999999999998   889999999999999    78888887777666543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.48  E-value=8.7e-15  Score=147.52  Aligned_cols=133  Identities=24%  Similarity=0.281  Sum_probs=110.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+..+.||.|+||.||++ ...+++.||||++....     ...+.+|++.+.++ +||||+++++++...+..+++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           2 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             ceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhc-CCCCCcchhhhcccCCcEEEEeec
Confidence            788899999999998884 55678999999876431     23466788666555 999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.++|.+++....    ...+++..+..++.|+   |+|||+++++||||+    +++.+|.+....+.+.
T Consensus        81 ~~~~l~~~~~~~~----~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~  147 (284)
T cd07860          81 LHQDLKKFMDASP----LSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA  147 (284)
T ss_pred             cccCHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccch
Confidence            9889999887622    3568888999999998   899999999999999    8888888777666554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.48  E-value=1.4e-14  Score=146.86  Aligned_cols=137  Identities=22%  Similarity=0.243  Sum_probs=108.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce-----E
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF-----V  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~-----~  476 (549)
                      .|++.+.||+|+||.||+. ...+++.||+|.+....     ...+.+|+..+..+.+||||+++++++...+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            3888899999999998874 56678999999876542     13466788777776567999999999887665     8


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCchhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~~~l~~L  545 (549)
                      |++|||+.++|.+++...... ....+++..++.++.|+   |.|||+++|+|||||    +++. +|..++..+.+
T Consensus        82 ~lv~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          82 YLVFEYLDSDLKKFMDSNGRG-PGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EEEeeccCcCHHHHHHHhccc-CCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccc
Confidence            999999999999988763311 12458899999999999   899999999999999    6776 66665555544

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.48  E-value=9.4e-15  Score=151.57  Aligned_cols=134  Identities=19%  Similarity=0.275  Sum_probs=108.6

Q ss_pred             eeeeee-cccccccCCceEEEe-eeecCchhHHHHHHHHHhh-----------------hhHHHHHHHHhcCCCCCeeEE
Q 042769          406 GKLFVS-NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHD-----------------VAFKEIQNLIASDQHPNIVRW  466 (549)
Q Consensus       406 gk~y~~-~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~-----------------~~~~Ei~~L~~~l~HpNIVrl  466 (549)
                      .++|.. .+.||.|+||.||.. +..+++.||||.+......                 .+.+|+..+.. ++||||+++
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~   85 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE-IKHENIMGL   85 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHh-CCCcceeee
Confidence            344654 678999999998884 5667999999977543111                 25578866555 499999999


Q ss_pred             eeeccCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc
Q 042769          467 YGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS  539 (549)
Q Consensus       467 ~g~~~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~  539 (549)
                      ++++...+..|++|||+.|+|.+++..      ...+++..+..++.|+   |+|||+++++|||||    |++.+|...
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~l~~~l~~------~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~k  159 (335)
T PTZ00024         86 VDVYVEGDFINLVMDIMASDLKKVVDR------KIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICK  159 (335)
T ss_pred             eEEEecCCcEEEEEeccccCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEE
Confidence            999999999999999999999999876      4568899999999999   899999999999999    788888777


Q ss_pred             hhhhhhh
Q 042769          540 PLLLSLM  546 (549)
Q Consensus       540 ~~l~~Lm  546 (549)
                      ...+++.
T Consensus       160 l~dfg~~  166 (335)
T PTZ00024        160 IADFGLA  166 (335)
T ss_pred             ECCccce
Confidence            6666544

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.48  E-value=6.4e-15  Score=147.37  Aligned_cols=136  Identities=24%  Similarity=0.306  Sum_probs=109.5

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc------ceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDK------DFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~------~~~yL  478 (549)
                      .|++.+.||+|+||.||.. ...+++.||+|++...  ......+|+..+....+||||+++++++...      ...|+
T Consensus         7 ~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~i   86 (272)
T cd06637           7 IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWL   86 (272)
T ss_pred             hhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEE
Confidence            4888899999999998874 5567889999987543  1234667887676666899999999998642      46899


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||+. |+|.+++...+    ...+++..+..++.|+   |.|||+++|+|||||    +++.++.+....+.+++
T Consensus        87 v~e~~~~~~L~~~l~~~~----~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~  159 (272)
T cd06637          87 VMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  159 (272)
T ss_pred             EEEcCCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCce
Confidence            999997 59999987622    3458888899999998   899999999999999    88888888777776654

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.48  E-value=2e-14  Score=145.20  Aligned_cols=138  Identities=21%  Similarity=0.173  Sum_probs=107.0

Q ss_pred             eeecccccccCCceEEEee-----eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG-----IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-----~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.+.||+|+||.||+..     ..+++.+|+|.+...    ....+.+|+..+.+ ++||||+++++++......|++
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv   85 (283)
T cd05090           7 VRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAE-LHHPNIVCLLGVVTQEQPVCML   85 (283)
T ss_pred             ceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhh-CCCCCeeeEEEEEecCCceEEE
Confidence            7888999999999988742     345678999988632    22356678865555 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccC-----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          480 LERCT-CSLDDLIQTYSDS-----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~-----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |||+. |+|.+++......           .....+++..+..++.|+   |+|||+++++|||||    |++.++.++.
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl  165 (283)
T cd05090          86 FEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKI  165 (283)
T ss_pred             EEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEe
Confidence            99997 5999998642210           012346777888888888   899999999999999    8888887777


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+.+
T Consensus       166 ~dfg~~~  172 (283)
T cd05090         166 SDLGLSR  172 (283)
T ss_pred             ccccccc
Confidence            7666553

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.48  E-value=1.4e-14  Score=147.16  Aligned_cols=136  Identities=22%  Similarity=0.243  Sum_probs=109.7

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ..+.|++.+.||+|+||.||. .+..+++.+|+|.+...   ..+.+.+|+..+.. ++||||+++++++..+...|+||
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~   88 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILAT-CNHPYIVKLLGAFYWDGKLWIMI   88 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCcEeeeEEEEEeCCeEEEEE
Confidence            345599999999999999888 45667899999987643   23356678866544 59999999999999999999999


Q ss_pred             ccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||+.| +|..++...     ...+++..+..++.|+   |.|||+++++|||||    +++.+|...+..+.+.
T Consensus        89 e~~~~~~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~  157 (292)
T cd06644          89 EFCPGGAVDAIMLEL-----DRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVS  157 (292)
T ss_pred             ecCCCCcHHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccc
Confidence            99985 888777551     3458889999999998   889999999999999    7788887777666543

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.48  E-value=1.2e-14  Score=148.53  Aligned_cols=133  Identities=26%  Similarity=0.329  Sum_probs=109.2

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|.+.+.||+|+||.||+. +..+++.||+|.+...   ..+.+.+|+..+ +.++||||+++++++...+..|+||||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l-~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVM-RENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHH-HhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            44999999999999998774 5678999999977532   233456787555 445999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++ ++|.+++..       ..+++..+..++.|+   |.|||+.+++|||||    |++.+|.+....+.+++
T Consensus        98 ~~~~~L~~~~~~-------~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~  163 (297)
T cd06656          98 LAGGSLTDVVTE-------TCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCA  163 (297)
T ss_pred             cCCCCHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccce
Confidence            97 599999865       347788888888888   889999999999999    88888888777776543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.48  E-value=2.2e-14  Score=142.22  Aligned_cols=133  Identities=19%  Similarity=0.233  Sum_probs=109.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+..+.||+|+||.|+. ++..+++.+++|.+..     .....+.+|+..+.. ++|+||+++++++...+..+++|||
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           2 YIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSL-LQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             ceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHh-CCCCCeeEEEeEEecCCeEEEEEEe
Confidence            88899999999998876 5677889999996543     233456788866655 4999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+ |+|.+++....    ...+++..+..++.|+   |.|||+.+++||||+    +++.++.++...+.+.
T Consensus        81 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~  148 (256)
T cd08221          81 ANGGTLYDKIVRQK----GQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGIS  148 (256)
T ss_pred             cCCCcHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcce
Confidence            98 59999997632    3458888999999888   889999999999999    7788888777665543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.48  E-value=1e-14  Score=149.88  Aligned_cols=135  Identities=20%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             cccccccCCceEEEee-e--ecCchhHHHHHHHHH-hhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEEEEeccccc
Q 042769          412 NTEIAKGSNGTVVYEG-I--YEGRPVAVKRLVRAL-HDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVYLSLERCTC  485 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~-~--~~g~~VAVK~i~~~~-~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~yLVmE~~~G  485 (549)
                      +++||+|+||.||++. .  .+++.||+|.+.... .....+|+..+.+ ++||||+++++++..  ....|++|||+.+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRE-LKHPNVISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHh-cCCCCCcceeeeEecCCCcEEEEEEeccCC
Confidence            4689999999988853 2  356889999876432 2346789966655 499999999998853  4568999999999


Q ss_pred             chhhhhhhcccC---CcccccCchhhhHHhhhe---eecccceeEEEeecc----cc----ccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDS---SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW----KADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~---~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll----~~~G~p~~~l~~Lmr  547 (549)
                      +|.+++......   .....+++..++.++.|+   |+|||+++|+|||||    |+    +.+|..++..+++++
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCcee
Confidence            999888653211   112358888999999999   899999999999999    56    345666666665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.48  E-value=1.3e-14  Score=148.46  Aligned_cols=137  Identities=23%  Similarity=0.218  Sum_probs=108.4

Q ss_pred             eeecccccccCCceEEEe-eee--cCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIY--EGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~--~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~y  477 (549)
                      |.+.+.||+|+||.||.. ...  +++.||+|.+...      ......+|+..+.. ++||||+++++++...  ...|
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRE-LKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHh-cCCCCccceEEEEeCCCCceEE
Confidence            778889999999998884 445  6899999988762      12355678865544 5999999999999988  7899


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc----CCCCchhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA----DGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~----~G~p~~~l~~Lm  546 (549)
                      +||||++++|.+++..+... ....+++..++.++.|+   |.|||+++|+|||||    |++.    +|..++..+.+.
T Consensus        81 lv~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQA-KRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccC-CCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            99999998888887653311 12368889999999999   889999999999999    7888    676666666554


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       160 ~  160 (316)
T cd07842         160 R  160 (316)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.48  E-value=4.9e-14  Score=155.18  Aligned_cols=139  Identities=15%  Similarity=0.102  Sum_probs=101.5

Q ss_pred             eeeeecccccccCCceEEEeee--ecCchh------------------HHHHHHHH--HhhhhHHHHHHHHhcCCCCCee
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGI--YEGRPV------------------AVKRLVRA--LHDVAFKEIQNLIASDQHPNIV  464 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~--~~g~~V------------------AVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIV  464 (549)
                      +.|++.++||+|+||+||++..  ..+...                  +.|.+...  ....+.+|+..|..+ +|||||
T Consensus       148 ~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l-~HpnIv  226 (501)
T PHA03210        148 AHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRL-NHENIL  226 (501)
T ss_pred             hccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhC-CCCCcC
Confidence            3499999999999999987421  111111                  22222211  223466888666554 999999


Q ss_pred             EEeeeccCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          465 RWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       465 rl~g~~~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      ++++++...+..|+++|++.++|.+++..... ..........++.++.|+   |+|||+++|||||||    |++.+|.
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~-~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~  305 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYDFDLYSFMYDEAF-DWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGK  305 (501)
T ss_pred             cEeEEEEECCeeEEEEeccccCHHHHHhhccc-cccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC
Confidence            99999999999999999999999888765221 011223355677888888   899999999999999    8899999


Q ss_pred             Cchhhhhhhh
Q 042769          538 PSPLLLSLMR  547 (549)
Q Consensus       538 p~~~l~~Lmr  547 (549)
                      .++..+++.+
T Consensus       306 vkL~DFGla~  315 (501)
T PHA03210        306 IVLGDFGTAM  315 (501)
T ss_pred             EEEEeCCCce
Confidence            8888877765

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.48  E-value=1.2e-14  Score=144.73  Aligned_cols=134  Identities=20%  Similarity=0.182  Sum_probs=106.6

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|++.++||+|+||.||++...+++.||+|.+....  ...+.+|+..+.+ ++||||+++++++. .+..+++|||+.
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQ-LQHPRLVRLYAVVT-QEPIYIITEYME   83 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHh-cCCcCeeeEEEEEc-cCCcEEEEEcCC
Confidence            4488899999999999888766678899999877532  2356778865544 49999999999874 457899999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                       |+|.+++....    ...+++..+..++.|+   |+|||+.+++|||||    +++.++......+.+.
T Consensus        84 ~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~  149 (260)
T cd05067          84 NGSLVDFLKTPE----GIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLA  149 (260)
T ss_pred             CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcce
Confidence             69999987622    3467888888888888   899999999999999    7888877666655543

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.48  E-value=1.1e-14  Score=144.83  Aligned_cols=132  Identities=21%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      |++.+.||.|+||.||......++.+|+|.+....   ...+.+|+..+..+ +||||+++++++......+++|||++ 
T Consensus         8 y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~~~   86 (261)
T cd05148           8 FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRL-RHKHLISLFAVCSVGEPVYIITELMEK   86 (261)
T ss_pred             HHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcC-CCcchhheeeeEecCCCeEEEEeeccc
Confidence            88899999999999887544448899999887542   34566788665554 99999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |+|.++++...    ...+++..+..++.|+   |+|||+++++|||||    |++.++..+...+.+
T Consensus        87 ~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~  150 (261)
T cd05148          87 GSLLAFLRSPE----GQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGL  150 (261)
T ss_pred             CCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccc
Confidence            59999997632    3457888899999988   889999999999999    778887766655443

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.48  E-value=1.1e-14  Score=151.35  Aligned_cols=135  Identities=24%  Similarity=0.282  Sum_probs=108.9

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----c
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----D  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----~  474 (549)
                      +++.|++.+.||+|+||.||. .+..+|+.||+|.+...    ......+|+..+..+ +||||+++++++...     .
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~~   81 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRF-KHENIIGILDIIRPPSFESFN   81 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhC-CCCCcCchhheeecccccccc
Confidence            455699999999999999887 46778999999987532    233456788655554 899999999876543     3


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ..|+++||+.++|.+++..       ..+++..+..++.|+   |+|||+++|+|||||    |++.+|...+..+.+.+
T Consensus        82 ~~~lv~e~~~~~l~~~~~~-------~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~  154 (336)
T cd07849          82 DVYIVQELMETDLYKLIKT-------QHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             eEEEEehhcccCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECccccee
Confidence            5899999999999888754       458899999999998   889999999999999    78888888777666554

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.48  E-value=2.1e-14  Score=143.40  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=105.1

Q ss_pred             eeecccccccCCceEEEeee-e---cCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce----
Q 042769          409 FVSNTEIAKGSNGTVVYEGI-Y---EGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF----  475 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~-~---~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~----  475 (549)
                      |.+.+.||+|+||.||.... .   ++..||+|++...     ....+.+|+..+.. ++||||+++++++.....    
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKD-FDHPNVMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHh-CCCCCeeeEEeeeccCCccccC
Confidence            45678999999999877432 2   3478999987642     22356678865554 599999999998765443    


Q ss_pred             --EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          476 --VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       476 --~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                        .+++|||++ |+|..++...........+++..+..++.|+   |.|||+++++|||||    |+++++.+++..+.+
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  159 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGL  159 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccc
Confidence              799999997 6999998664322233468888899999998   899999999999999    788888877776665


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       160 ~~  161 (273)
T cd05035         160 SK  161 (273)
T ss_pred             ee
Confidence            43

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.48  E-value=2.2e-14  Score=144.73  Aligned_cols=139  Identities=26%  Similarity=0.332  Sum_probs=107.5

Q ss_pred             eeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeecc-----CcceEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVEN-----DKDFVY  477 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~-----~~~~~y  477 (549)
                      .+.|++.+.||+|+||.||+ ....+++.+|+|.+...  ....+.+|+..+.++.+||||+++++++.     .....+
T Consensus        17 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~   96 (286)
T cd06638          17 SDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLW   96 (286)
T ss_pred             ccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEE
Confidence            34499999999999999887 46677899999977642  12345678866666657999999999873     445789


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++|||++ |+|.+++....  .....+++..+..++.|+   |.|||+++++|||||    +++.+|.+.+..+.+.
T Consensus        97 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~  171 (286)
T cd06638          97 LVLELCNGGSVTDLVKGFL--KRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVS  171 (286)
T ss_pred             EEEeecCCCCHHHHHHHhh--ccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCce
Confidence            9999997 59999876422  113457888888899888   889999999999999    7888887766655543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.48  E-value=2.6e-14  Score=148.42  Aligned_cols=142  Identities=20%  Similarity=0.194  Sum_probs=108.3

Q ss_pred             eeeeeecccccccCCceEEEe-eee-------cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIY-------EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~-------~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      ...|.+.+.||+|+||.||.+ ...       .+..||+|.+...    ....+.+|+..+.++.+||||+++++++...
T Consensus        11 ~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (334)
T cd05100          11 RTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   90 (334)
T ss_pred             HhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC
Confidence            345899999999999998874 221       1236888876632    2345678887666665899999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      +..+++|||++ |+|.+++.......          ....++...+..++.|+   |.|||+++++|||||    |++.+
T Consensus        91 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~  170 (334)
T cd05100          91 GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTED  170 (334)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCC
Confidence            99999999997 69999997632110          12246667777888888   889999999999999    78888


Q ss_pred             CCCchhhhhhhh
Q 042769          536 GHPSPLLLSLMR  547 (549)
Q Consensus       536 G~p~~~l~~Lmr  547 (549)
                      +..++..+.+.|
T Consensus       171 ~~~kL~Dfg~~~  182 (334)
T cd05100         171 NVMKIADFGLAR  182 (334)
T ss_pred             CcEEECCcccce
Confidence            887777766655

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.47  E-value=2.3e-14  Score=142.56  Aligned_cols=136  Identities=21%  Similarity=0.291  Sum_probs=109.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||+. ...+|+.||+|.++..      ......+|+..+.+. +|+||+++++++...+..+++|
T Consensus         3 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~-~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           3 NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL-DHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             ceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhC-CCCCeeeeeeeeecCCeEEEEE
Confidence            3889999999999998874 5558999999976531      234567888666555 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||++ |+|.+++....  .....+++..+..++.|+   |.|||+.+++|||||    +++.+|......+.+.
T Consensus        82 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~  153 (267)
T cd08224          82 ELADAGDLSRMIKHFK--KQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             ecCCCCCHHHHHHHhc--ccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEecccee
Confidence            9998 59999987532  123457888899999988   889999999999999    7888887776665543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.47  E-value=1.8e-14  Score=144.59  Aligned_cols=137  Identities=21%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             eeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |+..+.||+|+||.||.+. .     ...+.+|+|.+...    ..+.+.+|++.+.++ +||||+++++++......|+
T Consensus         7 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~l   85 (275)
T cd05046           7 LQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL-SHKNVVRLLGLCREAEPHYM   85 (275)
T ss_pred             ceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhc-CCcceeeeEEEECCCCcceE
Confidence            8888999999999988742 2     23467888877642    234567888766555 99999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC---CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDS---SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~---~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|||++ |+|.+++......   .....+++..+..++.|+   |+|||+++|+|||||    |++.+|.+....+.+.
T Consensus        86 v~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~  164 (275)
T cd05046          86 ILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLS  164 (275)
T ss_pred             EEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccc
Confidence            999998 6999999763210   001258899999999999   899999999999999    7888888776665543

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.47  E-value=2.9e-14  Score=142.71  Aligned_cols=131  Identities=21%  Similarity=0.159  Sum_probs=104.2

Q ss_pred             eeecccccccCCceEEEe-eeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |++.+.||+|+||.||++ ...++   ..||||.+...    ....+..|+..+.. ++||||+++++++......+++|
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           6 VKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQ-FDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             eEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCcCcceEEEEECCCCceEEEE
Confidence            788899999999998874 33333   35999987642    23356678865554 59999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||++ |+|.+++...     .+.+++..++.++.|+   |.|||+++++|||||    |++.++.++...+.+
T Consensus        85 e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~  152 (269)
T cd05065          85 EFMENGALDSFLRQN-----DGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGL  152 (269)
T ss_pred             ecCCCCcHHHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCcc
Confidence            9997 5999998762     2457888899999988   899999999999999    777777766655443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.47  E-value=1.5e-14  Score=148.32  Aligned_cols=137  Identities=20%  Similarity=0.163  Sum_probs=108.4

Q ss_pred             eeeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|.+.+.||+|+||.||...      ..++..||+|++...    ..+.+.+|+..+.++.+||||+++++++...+..
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            449999999999999987742      223567999977643    2335678887766665899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++|||+. |+|.++++...    ...+++..+..++.|+   |+|||+++|+|||||    |++.++......+.+.+
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~----~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKR----ESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccc
Confidence            99999997 69999997622    2337888999999998   889999999999999    77777776666655543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.47  E-value=1.6e-14  Score=144.42  Aligned_cols=132  Identities=22%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             eeecccccccCCceEEEeee-e---cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYEGI-Y---EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~-~---~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |++.+.||+|+||.||+... .   +...||||.+...    ....+.+|+..+.. ++||||+++++++...+..+++|
T Consensus         6 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~iv~   84 (266)
T cd05033           6 VTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQ-FDHPNIIRLEGVVTKSRPVMIIT   84 (266)
T ss_pred             ceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHh-CCCCCcceEeEEEecCCceEEEE
Confidence            88889999999999887422 2   2457899977642    22345678866544 49999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||++ |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.++.+....+.+.
T Consensus        85 e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~  153 (266)
T cd05033          85 EYMENGSLDKFLREN-----DGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLS  153 (266)
T ss_pred             EcCCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchh
Confidence            9997 5999999762     2468888999999998   889999999999999    7888888777766654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.47  E-value=1.1e-14  Score=146.18  Aligned_cols=138  Identities=24%  Similarity=0.235  Sum_probs=110.3

Q ss_pred             eeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |.+.+.||+|+||.||++..      .+++.||+|.+...    ..+.+.+|++.+.. ++||||+++++++......++
T Consensus         7 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~l   85 (280)
T cd05049           7 IVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTN-FQHENIVKFYGVCTEGDPPIM   85 (280)
T ss_pred             hhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHh-cCCCCchheeeEEecCCCeEE
Confidence            88889999999999887422      33578999987643    23456788866555 599999999999999999999


Q ss_pred             Eecccc-cchhhhhhhccc--------CCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          479 SLERCT-CSLDDLIQTYSD--------SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~--------~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      +|||++ |+|.++++....        ......+++..+..++.|+   |+|||+++++|||||    |++.+|.+++..
T Consensus        86 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d  165 (280)
T cd05049          86 VFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGD  165 (280)
T ss_pred             EEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECC
Confidence            999997 599999986431        1223457888888999998   889999999999999    888888888777


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +.+.+
T Consensus       166 ~g~~~  170 (280)
T cd05049         166 FGMSR  170 (280)
T ss_pred             cccce
Confidence            76654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.47  E-value=2.1e-14  Score=150.47  Aligned_cols=135  Identities=27%  Similarity=0.328  Sum_probs=109.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~----  473 (549)
                      .+.+.|+..+.||+|+||.||.+ +..+|+.||+|++.+.     ....+.+|+..+. .++||||+++++++...    
T Consensus        13 ~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~-~l~h~~iv~~~~~~~~~~~~~   91 (353)
T cd07850          13 TVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMK-LVNHKNIIGLLNVFTPQKSLE   91 (353)
T ss_pred             hhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHH-hcCCCCCcceeeeeccCCCcc
Confidence            34556999999999999998884 6678999999987632     2335567886554 45999999999987644    


Q ss_pred             --ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          474 --DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       474 --~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                        ...|+|||||.++|.+.+..        .+++..+..++.|+   |+|||+++|+|||||    |++.+|......++
T Consensus        92 ~~~~~~lv~e~~~~~l~~~~~~--------~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg  163 (353)
T cd07850          92 EFQDVYLVMELMDANLCQVIQM--------DLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG  163 (353)
T ss_pred             ccCcEEEEEeccCCCHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCc
Confidence              35799999999999988865        27888888899998   889999999999999    88899988777766


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +.+
T Consensus       164 ~~~  166 (353)
T cd07850         164 LAR  166 (353)
T ss_pred             cce
Confidence            554

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.47  E-value=1.9e-14  Score=146.74  Aligned_cols=140  Identities=21%  Similarity=0.237  Sum_probs=108.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCc--hhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGR--PVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~--~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.+.||+|+||.||.. ...++.  .+|+|.++.    ...+.+.+|+..+.++.+||||+++++++...+..|++|
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~   82 (297)
T cd05089           3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAI   82 (297)
T ss_pred             cceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEE
Confidence            3888899999999998774 333443  457776653    123456788877767668999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          481 ERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      ||++ |+|.+++.......          ....+++..++.++.|+   |+|||+++|+|||||    |++.++.+++..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~d  162 (297)
T cd05089          83 EYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIAD  162 (297)
T ss_pred             EecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEECC
Confidence            9997 69999997632111          12357888889999998   899999999999999    788888887777


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +++.+
T Consensus       163 fg~~~  167 (297)
T cd05089         163 FGLSR  167 (297)
T ss_pred             cCCCc
Confidence            76653

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.47  E-value=1.1e-14  Score=149.44  Aligned_cols=139  Identities=22%  Similarity=0.207  Sum_probs=114.3

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      +.....+ |....+||+|+||+|.++ .+.+.+.+|||++++..      .+....|-+.|.-.-+-|.+++|+.+|+.-
T Consensus       344 d~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTm  422 (683)
T KOG0696|consen  344 DRIKATD-FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTM  422 (683)
T ss_pred             cceeecc-cceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhh
Confidence            3445555 999999999999998884 56678999999999751      222334554443333678999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +.+|+||||++ |+|.-.|+.      .+.+.+..+..++.+|   |=+||+++||.||||    |+|.+||.++..+++
T Consensus       423 DRLyFVMEyvnGGDLMyhiQQ------~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGm  496 (683)
T KOG0696|consen  423 DRLYFVMEYVNGGDLMYHIQQ------VGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGM  496 (683)
T ss_pred             hheeeEEEEecCchhhhHHHH------hcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeeccc
Confidence            99999999998 599998988      6779999999999998   779999999999999    799999999988776


Q ss_pred             h
Q 042769          546 M  546 (549)
Q Consensus       546 m  546 (549)
                      -
T Consensus       497 c  497 (683)
T KOG0696|consen  497 C  497 (683)
T ss_pred             c
Confidence            4

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.47  E-value=1.4e-14  Score=145.82  Aligned_cols=132  Identities=25%  Similarity=0.249  Sum_probs=108.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||.||.. ...+++.+|+|.+...   ..+.+.+|+..+.++ +||||+++++.+......|+||||+
T Consensus         6 ~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611           6 IWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSEC-KHPNIVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             HHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhC-CCCceeEEEEEEecCCeEEEEeecc
Confidence            3888999999999998874 4557889999976532   234566788665554 8999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +| +|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    +++.+|......+.+
T Consensus        85 ~~~~L~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~  149 (280)
T cd06611          85 DGGALDSIMLEL-----ERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGV  149 (280)
T ss_pred             CCCcHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCcc
Confidence            85 999988762     2468999999999999   889999999999999    778888777665544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-14  Score=140.60  Aligned_cols=139  Identities=22%  Similarity=0.221  Sum_probs=114.9

Q ss_pred             eeeeeecccccccCCceEEE-eeeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----ceE
Q 042769          406 GKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----DFV  476 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----~~~  476 (549)
                      +++|.+.+.||+|+|+.|++ ++..+++.+|+|++.-   +..+.+.+|+... ++++||||++++++...+     .+.
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~-rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNH-RKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHH-HhhCCcchHHHHHHHHHhhccCceeE
Confidence            46699999999999999988 6899999999998874   3455678999665 455999999999987543     359


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||+++|.. |+|.+.++..+.  +...+++.+++.++.++   |++||+..  ++|||||    |+...|.|...+++=|
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~--kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~  176 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKI--KGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSA  176 (302)
T ss_pred             EEEeehhccccHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCc
Confidence            99999986 999999988653  34479999999999999   99999988  9999999    6666788877776655


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       177 ~  177 (302)
T KOG2345|consen  177 T  177 (302)
T ss_pred             c
Confidence            4

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.47  E-value=2.5e-14  Score=142.68  Aligned_cols=131  Identities=25%  Similarity=0.294  Sum_probs=105.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      |.+...||+|+||.||.. +..+++.+|+|.+...            ..+.+.+|+..+.. ++||||+++++++...+.
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKE-LQHENIVQYLGSSLDADH   80 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHh-cCCCCeeeEEEEEEeCCc
Confidence            667789999999998874 5567889999966421            12345677755544 499999999999999999


Q ss_pred             EEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          476 VYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       476 ~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+++|||++| +|.+++..      ...+++..+..++.|+   |+|||+++++||||+    |++.++.+....+++.
T Consensus        81 ~~lv~e~~~~~~L~~~l~~------~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~  153 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNN------YGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGIS  153 (267)
T ss_pred             cEEEEEecCCCCHHHHHHh------ccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCC
Confidence            9999999975 99999977      4568888889999998   899999999999999    7788887776665544

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.47  E-value=7.3e-14  Score=153.26  Aligned_cols=142  Identities=12%  Similarity=0.171  Sum_probs=100.4

Q ss_pred             CceeccCCCc------cccccccceeeeeccccccccccceeeecC---------Ccchhhhccc-cccccCCcchhh--
Q 042769            1 VSWTFGTGTP------IYSSYQAPVQATVDQDNASELTNSFFIDCG---------EDWGLYAHGL-LGRMKLPQSIDD--   62 (549)
Q Consensus         1 ~~W~f~tg~~------i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~ly~~~~-~g~~~~~~~~~~--   62 (549)
                      ++|+|.++++      |.|+              |.+..+.+|.++         .+|.||++|+ +|+++|.|.+..  
T Consensus       132 ~~W~~~~~~~~~~~~~i~ss--------------P~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         132 QVWKFGNNDQVPPGYTMTGA--------------PTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             EeeeecCCCCcCcceEecCC--------------CEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            4799999887      5566              777777777765         3688999999 999999998741  


Q ss_pred             -------------------hhhcCCCcc-cccceeecceee------------------EEEEEEccccceeeecCCCCC
Q 042769           63 -------------------YVKTAPHIT-EEGAVTLGSKTT------------------TVFVLEAKTGRLIRTYGSPHS  104 (549)
Q Consensus        63 -------------------~v~~sP~~~-~dg~v~~Gsk~~------------------~~~~vda~tG~~~~~~~~~~~  104 (549)
                                         .|.++|++. .+|.||+|+-++                  ++||||++||+++|+++....
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence                               244678875 478999998554                  899999999999999986421


Q ss_pred             Cccccc-hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          105 SSTLQN-EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       105 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                        ..+. +....+.+.+          -...+-..     ..+||++..++.|+|||++||+++|...+.
T Consensus       278 --~~~~~~~~s~p~~~~----------~~~~~g~~-----~~~V~~g~~~G~l~ald~~tG~~~W~~~~~  330 (488)
T cd00216         278 --DLWDYDGPNQPSLAD----------IKPKDGKP-----VPAIVHAPKNGFFYVLDRTTGKLISARPEV  330 (488)
T ss_pred             --CCcccccCCCCeEEe----------ccccCCCe-----eEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence              0111 0111110000          00001000     147999999999999999999999999876

The alignment model contains an 8-bladed beta-propeller.

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.47  E-value=1.8e-14  Score=142.39  Aligned_cols=133  Identities=25%  Similarity=0.249  Sum_probs=108.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |.+.+.||+|+||.||.. ...+++.||+|.+...     ....+.+|+..+.. ++||||+++++++...+..|++|||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           2 FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAK-LDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             ceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHh-cCCCCeehheeeeccCCEEEEEEEe
Confidence            777889999999998874 5567899999976532     33456678866555 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++ ++|.+++....    ...+++..+..++.|+   |.|||+++++|||||    +++.++.+.+..+.+.
T Consensus        81 ~~~~~L~~~l~~~~----~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~  148 (256)
T cd08529          81 AENGDLHKLLKMQR----GRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVA  148 (256)
T ss_pred             CCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccc
Confidence            97 59999998732    3468888888898888   889999999999999    7888888777666543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.47  E-value=9.8e-15  Score=151.64  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=109.4

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccC----cc
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVEND----KD  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~  474 (549)
                      +++.|++.+.||+|+||.||.. ...+|+.||+|++....     ...+.+|+..|.. ++||||+++++++..    ..
T Consensus         3 ~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~   81 (334)
T cd07855           3 VGSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRH-FKHDNIIAIRDILRPPGADFK   81 (334)
T ss_pred             hhhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHh-cCCCCccCHHHhccccCCCCc
Confidence            3455999999999999998874 66779999999877531     2345678865544 489999999998763    34


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|+||||+.|+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+.+.
T Consensus        82 ~~~lv~e~~~~~l~~~~~~------~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~  154 (334)
T cd07855          82 DVYVVMDLMESDLHHIIHS------DQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMA  154 (334)
T ss_pred             eEEEEEehhhhhHHHHhcc------CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccc
Confidence            6899999999999999876      4558999999999999   889999999999999    8889988877766543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.47  E-value=1.9e-14  Score=147.39  Aligned_cols=135  Identities=24%  Similarity=0.301  Sum_probs=109.5

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.|...+.||+|+||.||.. ...+++.||+|.+...      ....+.+|+..+..+ +||||+++++++...+..|+
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l-~h~niv~~~~~~~~~~~~~l   92 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQL-RHPNTIEYKGCYLREHTAWL   92 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEEeCCeEEE
Confidence            345888999999999998874 5567899999976532      233566888665554 99999999999999999999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||||+.|+|.+++...     ...+++..+..++.|+   |.|||+++++||||+    +++.+|.+++..+.++
T Consensus        93 v~e~~~g~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~  162 (307)
T cd06607          93 VMEYCLGSASDILEVH-----KKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSA  162 (307)
T ss_pred             EHHhhCCCHHHHHHHc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcc
Confidence            9999999988887652     2458889999999998   889999999999999    7888887776655543

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.47  E-value=2.5e-14  Score=146.42  Aligned_cols=130  Identities=20%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||+ .+..+++.||+|.+....      ...+.+|+..+. .++||||+++++.+..++..|++||
T Consensus         3 y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~-~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           3 FETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILT-FAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             ceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHH-hCCCCCeeeeEEEEecCCEEEEEEe
Confidence            88889999999999887 466778999999776432      224557775554 4599999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |+.| +|.+++..      .+.+++..+..++.|+   |.|||+++++|||||    |++.+|......+.+
T Consensus        82 ~~~g~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~  147 (305)
T cd05609          82 YVEGGDCATLLKN------IGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGL  147 (305)
T ss_pred             cCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCC
Confidence            9985 99999976      4568888888888888   889999999999999    788887766655443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.47  E-value=3.1e-14  Score=144.35  Aligned_cols=140  Identities=22%  Similarity=0.230  Sum_probs=109.6

Q ss_pred             eeeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.+.||+|+||.||... .     .....+|+|.+...    ....+.+|+..+..+.+|+||+++++++...+..+
T Consensus        13 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~   92 (293)
T cd05053          13 RLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLY   92 (293)
T ss_pred             HeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeE
Confidence            38889999999999988742 2     22367899977642    22346678866655548999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc
Q 042769          478 LSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS  539 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~  539 (549)
                      ++|||+. |+|.++++.....          .....+++..+..++.|+   |.|||+++|+|||||    |++.+|.++
T Consensus        93 li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~k  172 (293)
T cd05053          93 VVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMK  172 (293)
T ss_pred             EEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCeEE
Confidence            9999997 6999999753210          123468888889999998   899999999999999    788888887


Q ss_pred             hhhhhhhh
Q 042769          540 PLLLSLMR  547 (549)
Q Consensus       540 ~~l~~Lmr  547 (549)
                      ...+++.+
T Consensus       173 L~Dfg~~~  180 (293)
T cd05053         173 IADFGLAR  180 (293)
T ss_pred             eCcccccc
Confidence            77776654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.47  E-value=1.8e-14  Score=143.15  Aligned_cols=134  Identities=21%  Similarity=0.189  Sum_probs=108.5

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|.+.+.||+|+||.||+....+++.+|||.+...  ....+.+|+..+.. ++||||+++++++......+++|||+.
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKK-LRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhh-CCCCCEeeeeeeeecCCceEEEEeccC
Confidence            448999999999999988755556678999987743  23356788866655 599999999999998889999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ++|.+++....    ...+++..+..++.|+   |.|||+++++|||||    +++.+|..+...+.+
T Consensus        85 ~~~L~~~i~~~~----~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~  149 (261)
T cd05034          85 KGSLLDFLKSGE----GKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGL  149 (261)
T ss_pred             CCCHHHHHhccc----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECcccc
Confidence             59999997622    3457888889999888   889999999999999    788888777665543

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.46  E-value=3.9e-14  Score=141.19  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=94.4

Q ss_pred             ccccccCCceEEEe-eee-------cCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          413 TEIAKGSNGTVVYE-GIY-------EGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~-------~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.||+|+||.||+. ...       ....+|+|.+....   .+.+..|+. +++.++||||+++++++......++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~-~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAAS-MMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHH-HHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            46999999998874 222       24569999887542   234455664 4455699999999999999899999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                      ||+ |+|.++++..     ...+++..+..++.|+   |.|||+++|+|||||    |++.++..
T Consensus        80 ~~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~  139 (258)
T cd05078          80 YVKFGSLDTYLKKN-----KNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDR  139 (258)
T ss_pred             cCCCCcHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEeccccc
Confidence            998 5999999762     2357888888999999   899999999999999    77776654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.46  E-value=2e-14  Score=146.33  Aligned_cols=138  Identities=18%  Similarity=0.134  Sum_probs=106.3

Q ss_pred             eeeecccccccCCceEEEeee-----------------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEGI-----------------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRW  466 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~-----------------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl  466 (549)
                      .|++.+.||+|+||.||....                 .++..+|+|.+...    ....+.+|+..+..+ +|+||+++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~   84 (296)
T cd05095           6 RLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRL-KDPNIIRL   84 (296)
T ss_pred             hceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCcceE
Confidence            488999999999999887311                 12346888887643    234567888666555 99999999


Q ss_pred             eeeccCcceEEEEecccc-cchhhhhhhcccCC-----cccccCchhhhHHhhhe---eecccceeEEEeecc----ccc
Q 042769          467 YGVENDKDFVYLSLERCT-CSLDDLIQTYSDSS-----CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK  533 (549)
Q Consensus       467 ~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~~-----~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~  533 (549)
                      ++++...+..+++|||+. |+|.+++.......     ....+++..+..++.|+   |+|||+++++|||||    |++
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~  164 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVG  164 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEc
Confidence            999999999999999997 69999997743211     11346677889999998   899999999999999    778


Q ss_pred             cCCCCchhhhhhh
Q 042769          534 ADGHPSPLLLSLM  546 (549)
Q Consensus       534 ~~G~p~~~l~~Lm  546 (549)
                      .++...+..+++.
T Consensus       165 ~~~~~~l~dfg~~  177 (296)
T cd05095         165 KNYTIKIADFGMS  177 (296)
T ss_pred             CCCCEEeccCccc
Confidence            8887776665554

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=2.4e-15  Score=146.04  Aligned_cols=133  Identities=23%  Similarity=0.327  Sum_probs=112.7

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--------c
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--------D  474 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--------~  474 (549)
                      |+...+||+|.||.|++ +...+|+.||+|++..+.     ...+.+|+..| ..++|+|++.+++.|...        .
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL-~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHH-HHhcchhHHHHHHHHhhccCCcccccc
Confidence            77888999999999888 577889999999777542     23577899665 555999999999988642        3


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+||||++|+.+|.-+|..     ....++...+..++.++   |.|+|+..|+|||+|    |++.+|--.+.+++|+|
T Consensus        98 t~ylVf~~cehDLaGlLsn-----~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar  172 (376)
T KOG0669|consen   98 TFYLVFDFCEHDLAGLLSN-----RKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLAR  172 (376)
T ss_pred             eeeeeHHHhhhhHHHHhcC-----ccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeecccccc
Confidence            5899999999999999866     23679999999999998   889999999999999    89999999999999887

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.46  E-value=2.3e-14  Score=146.27  Aligned_cols=132  Identities=24%  Similarity=0.328  Sum_probs=108.1

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.+.||+|+||.||.. ...+++.+|+|.+...   ..+...+|+..+.. ++||||+++++.+......|+||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~-~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHh-CCCCCEeeEEEEEEeCCEEEEeecc
Confidence            45999999999999998774 5677899999977642   23356678865554 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +. ++|.+++..       ..+++..+..++.|+   |.|||+++|+|||||    |++.+|.+.+..+.+.
T Consensus        99 ~~~~~L~~~~~~-------~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~  163 (296)
T cd06654          99 LAGGSLTDVVTE-------TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFC  163 (296)
T ss_pred             cCCCCHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccc
Confidence            97 599999865       347788888999988   899999999999999    7888887776666543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.46  E-value=2.4e-14  Score=142.76  Aligned_cols=135  Identities=22%  Similarity=0.323  Sum_probs=108.8

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.. ...+++.+|||.+...      ....+.+|+..+.. ++||||+++++++...+..+++||
T Consensus         4 y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~~v~e   82 (267)
T cd08229           4 FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ-LNHPNVIKYYASFIEDNELNIVLE   82 (267)
T ss_pred             hhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHH-ccCCchhhhhheeEeCCeEEEEEE
Confidence            888899999999998874 5678999999965431      23356678865555 499999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |++| +|.+++....  .....+++..+..++.|+   |.|||+++++|+|||    +++.+|......+++.
T Consensus        83 ~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~  153 (267)
T cd08229          83 LADAGDLSRMIKHFK--KQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             ecCCCCHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhh
Confidence            9984 9999887522  123457888999999998   889999999999999    7888888777766543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=2.7e-14  Score=142.08  Aligned_cols=127  Identities=25%  Similarity=0.284  Sum_probs=102.5

Q ss_pred             ccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||++ ...+++.||+|.+.+..      ......|...+....+||||+++++++...+..|++|||++ 
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            57999999998884 55678999999776431      11234455445566689999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|.++++.      ...+++.++..++.|+   |.|||+.+++||||+    |++.++.+++..+.+
T Consensus        82 ~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~  143 (260)
T cd05611          82 GDCASLIKT------LGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGL  143 (260)
T ss_pred             CCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeeccc
Confidence            599999976      4568899999999999   889999999999999    778888776655544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.46  E-value=1.6e-14  Score=150.34  Aligned_cols=136  Identities=22%  Similarity=0.301  Sum_probs=110.5

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      +.+.|.+.+.||+|+||.||. .+..+++.||||.+...     ......+|+..+.. ++||||+++++++...     
T Consensus         3 ~~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~ni~~~~~~~~~~~~~~~   81 (337)
T cd07858           3 VDTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRH-LDHENVIAIKDIMPPPHREAF   81 (337)
T ss_pred             cccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHh-cCCCCccchHHheeccccccc
Confidence            344599999999999999887 46678999999987642     22345678866555 4999999999987654     


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ...|++|||+.++|.+++..      ...+++..+..++.|+   |.|||+++++|||||    |++.+|..++..+.++
T Consensus        82 ~~~~lv~e~~~~~L~~~~~~------~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~  155 (337)
T cd07858          82 NDVYIVYELMDTDLHQIIRS------SQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLA  155 (337)
T ss_pred             CcEEEEEeCCCCCHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccc
Confidence            34899999999999999876      4568999999999999   889999999999999    7888888877776665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       156 ~  156 (337)
T cd07858         156 R  156 (337)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=1.7e-14  Score=148.20  Aligned_cols=133  Identities=23%  Similarity=0.249  Sum_probs=108.2

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|+..+.||+|+||.||.+ ...+++.||+|.+...      ....+..|++.+.. ++||||+++++++......|++|
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILAT-LDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHh-CCCCCchhheeeeecCCEEEEEE
Confidence            3888999999999998884 5557899999977643      22345677765544 48999999999999999999999


Q ss_pred             ccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          481 ERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       481 E~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||+.| +|.+++....    ...+++..+..++.|+   |+|||+.+++|||||    +++.+|......+.+
T Consensus        81 e~~~~~~L~~~~~~~~----~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~  149 (316)
T cd05574          81 DYCPGGELFRLLQRQP----GKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDL  149 (316)
T ss_pred             EecCCCCHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecch
Confidence            99975 9999987622    3568889999999998   899999999999999    788888776665554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.46  E-value=1.5e-14  Score=146.70  Aligned_cols=132  Identities=26%  Similarity=0.319  Sum_probs=107.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVm  480 (549)
                      |+..+.||+|+||.||.+ ...+++.+|+|.++...     ...+.+|+..+..+ +||||+++++++...  ...|++|
T Consensus         7 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~lv~   85 (293)
T cd07843           7 YEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKL-QHPNIVTVKEVVVGSNLDKIYMVM   85 (293)
T ss_pred             hhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhc-CCCCEEEEEEEEEecCCCcEEEEe
Confidence            888999999999998874 55678899999776431     12345788666555 899999999998877  8899999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||+.++|.+++....     ..+++..++.++.|+   |+|||+++++|||||    |++.+|.+....+++.
T Consensus        86 e~~~~~L~~~~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~  153 (293)
T cd07843          86 EYVEHDLKSLMETMK-----QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLA  153 (293)
T ss_pred             hhcCcCHHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCce
Confidence            999999999887622     358999999999999   899999999999999    7888887776665543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.46  E-value=3.8e-14  Score=143.77  Aligned_cols=139  Identities=22%  Similarity=0.230  Sum_probs=109.4

Q ss_pred             eeeecccccccCCceEEEee------eecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|.+.+.||+|+||+||+..      ..++..+|+|.+...   ....+.+|++.+.++ +||||+++++++...+..++
T Consensus         6 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           6 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNL-QHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEecCCccEE
Confidence            38889999999999988742      123456888887642   234567888766555 99999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC-------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDS-------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~-------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      +|||++ |+|.+++..+...       .....+++..+..++.|+   |+|||+++++|||||    |++.+|...+..+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~df  164 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDF  164 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccC
Confidence            999997 6999999764311       112358889999999999   889999999999999    7888888777766


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .+.+
T Consensus       165 g~~~  168 (288)
T cd05093         165 GMSR  168 (288)
T ss_pred             Cccc
Confidence            6544

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.46  E-value=3.4e-14  Score=146.21  Aligned_cols=140  Identities=21%  Similarity=0.212  Sum_probs=108.4

Q ss_pred             eeeecccccccCCceEEEe-ee-------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .|.+.+.||+|+||.||.. +.       .....+|+|.+...    ....+.+|+..+..+.+||||+++++++...+.
T Consensus        13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~   92 (314)
T cd05099          13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGP   92 (314)
T ss_pred             HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCc
Confidence            4888999999999998873 21       12456888877642    223466788666666579999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      .|++|||+. |+|.+++......          .....++...+..++.|+   |.|||+++++|||||    |++.+|.
T Consensus        93 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~  172 (314)
T cd05099          93 LYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNV  172 (314)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCc
Confidence            999999997 6999999764311          012347777888888888   889999999999999    7888888


Q ss_pred             Cchhhhhhhh
Q 042769          538 PSPLLLSLMR  547 (549)
Q Consensus       538 p~~~l~~Lmr  547 (549)
                      .++..+.+++
T Consensus       173 ~kL~Dfg~~~  182 (314)
T cd05099         173 MKIADFGLAR  182 (314)
T ss_pred             EEEccccccc
Confidence            7777666654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.46  E-value=2.7e-14  Score=149.18  Aligned_cols=135  Identities=23%  Similarity=0.292  Sum_probs=109.0

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD----  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----  474 (549)
                      +.+.|++.+.||+|+||.||+. ...+++.||||++...     ....+.+|+..+..+ +||||+++++++....    
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-KHENVIGLLDVFTPDLSLDR   91 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc-CCCCccceeeeecCCccccc
Confidence            4556999999999999998884 5678999999987532     223466788666555 9999999999987553    


Q ss_pred             --eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          475 --FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       475 --~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                        ..++||||+.++|.+++..       ..+++..++.++.|+   |+|||+.+|+|||||    |++.+|.+....+++
T Consensus        92 ~~~~~lv~e~~~~~l~~~~~~-------~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~  164 (343)
T cd07880          92 FHDFYLVMPFMGTDLGKLMKH-------EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL  164 (343)
T ss_pred             cceEEEEEecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccc
Confidence              4689999997799888754       358899999999999   889999999999999    788888877776666


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       165 ~~  166 (343)
T cd07880         165 AR  166 (343)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.46  E-value=3.5e-14  Score=142.28  Aligned_cols=132  Identities=23%  Similarity=0.196  Sum_probs=99.6

Q ss_pred             ccccccCCceEEEee---eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYEG---IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~---~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||+..   ..++..+|+|.+...    ....+.+|+..+.. ++||||+++++++......++||||++ 
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~   79 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRS-LQHSNLLQCLGQCTEVTPYLLVMEFCPL   79 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHh-CCCCCEeeEEEEEcCCCCcEEEEECCCC
Confidence            369999999987742   234567899977642    22346678865554 499999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+|.++++..+. .....+++..+..++.|+   |+|||+++++|||||    |++.++.++...+.+.
T Consensus        80 g~L~~~l~~~~~-~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~  147 (269)
T cd05087          80 GDLKGYLRSCRK-AELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLS  147 (269)
T ss_pred             CcHHHHHHHhhh-cccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCcccc
Confidence            699999976331 112235566777888888   899999999999999    7777777766665544

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.46  E-value=4.4e-14  Score=141.33  Aligned_cols=132  Identities=21%  Similarity=0.241  Sum_probs=106.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~y  477 (549)
                      |+..+.||+|+||.||.. ...+++.||+|++...        ....+.+|+..+..+ +||||+++++++..  ....+
T Consensus         4 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           4 WRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL-QHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             ccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHc-CCCCeeeEEEEEEcCCCCEEE
Confidence            788899999999998874 5677899999976531        123466788665554 99999999998865  35789


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|||++ ++|.+++..      ...+++...+.++.|+   |+|||+++|+|||||    +++.++.+....+++.+
T Consensus        83 l~~e~~~~~~L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~  154 (266)
T cd06651          83 IFMEYMPGGSVKDQLKA------YGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (266)
T ss_pred             EEEeCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcc
Confidence            9999998 599999976      3457888888999988   899999999999999    88888887777666543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.45  E-value=2.7e-14  Score=146.44  Aligned_cols=135  Identities=19%  Similarity=0.178  Sum_probs=101.2

Q ss_pred             cccccccCCceEEEeee---ecCchhHHHHHHHHH-hhhhHHHHHHHHhcCCCCCeeEEeeecc--CcceEEEEeccccc
Q 042769          412 NTEIAKGSNGTVVYEGI---YEGRPVAVKRLVRAL-HDVAFKEIQNLIASDQHPNIVRWYGVEN--DKDFVYLSLERCTC  485 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~---~~g~~VAVK~i~~~~-~~~~~~Ei~~L~~~l~HpNIVrl~g~~~--~~~~~yLVmE~~~G  485 (549)
                      +.+||+|+||.||++..   .+++.||+|.+.... .....+|+..+.. ++||||+++++++.  .+...|++|||+.+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRE-LKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHh-CCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            35899999999888532   356789999876432 2346688866655 59999999999874  45678999999999


Q ss_pred             chhhhhhhcccC---CcccccCchhhhHHhhhe---eecccceeEEEeecc----cc----ccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDS---SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW----KADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~---~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll----~~~G~p~~~l~~Lmr  547 (549)
                      +|.+++......   .....+++..++.++.|+   |.|||+++|+|||||    |+    +.+|..++..+++.+
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence            998888643211   112357888889999999   899999999999999    55    455666666666553

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.45  E-value=3.6e-14  Score=141.91  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=101.3

Q ss_pred             eecccccccCCceEEEee-eecCc--hhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc------ce
Q 042769          410 VSNTEIAKGSNGTVVYEG-IYEGR--PVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK------DF  475 (549)
Q Consensus       410 ~~~~~LG~G~fG~V~~~~-~~~g~--~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~------~~  475 (549)
                      .+++.||+|+||.||... ..+++  .+|+|.++.     ...+.+.+|+..+..+ +||||+++++++...      ..
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEF-DHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEccCCcccCCCC
Confidence            456799999999987743 33343  588887653     2234566788666554 999999999976432      24


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+++|||+. |+|.+++...+.......+++..+..++.|+   |+|||+++|+|||||    |++.++.+....+++.+
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  160 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSK  160 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCccc
Confidence            789999997 6999888543221223457888899999998   899999999999999    88888888877766543

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.45  E-value=1.8e-14  Score=146.80  Aligned_cols=135  Identities=24%  Similarity=0.295  Sum_probs=106.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD----  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----  474 (549)
                      +++ |++.+.||+|+||.||.+ ...+++.||||++....     .....+|+..+.+ ++||||+++++++....    
T Consensus        11 ~~~-y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~   88 (310)
T cd07865          11 VSK-YEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQL-LKHENVVNLIEICRTKATPYN   88 (310)
T ss_pred             hhh-eEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHh-CCCCCccceEEEEeccccccc
Confidence            344 999999999999998884 55679999999775421     1234578865544 49999999999876544    


Q ss_pred             ----eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          475 ----FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       475 ----~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                          ..++||||+.++|.+++...     ...+++..++.++.|+   |+|||+++++|||||    |++.+|.+++..+
T Consensus        89 ~~~~~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~df  163 (310)
T cd07865          89 RYKGSFYLVFEFCEHDLAGLLSNK-----NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADF  163 (310)
T ss_pred             CCCceEEEEEcCCCcCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcC
Confidence                45999999999998888651     2358899999999999   899999999999999    7888887777665


Q ss_pred             hhh
Q 042769          544 SLM  546 (549)
Q Consensus       544 ~Lm  546 (549)
                      .+.
T Consensus       164 g~~  166 (310)
T cd07865         164 GLA  166 (310)
T ss_pred             CCc
Confidence            544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.45  E-value=3.1e-14  Score=143.39  Aligned_cols=138  Identities=22%  Similarity=0.183  Sum_probs=107.7

Q ss_pred             eeecccccccCCceEEEeee-e-----cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI-Y-----EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~-~-----~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |++.+.||+|+||.||.... .     ....||+|.+...    ....+.+|+..+.. ++||||+++++++......|+
T Consensus         7 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~-l~h~~i~~~~~~~~~~~~~~~   85 (283)
T cd05048           7 VRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSD-LQHPNIVCLLGVCTKEQPTCM   85 (283)
T ss_pred             cchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHh-cCCcccceEEEEEcCCCceEE
Confidence            88889999999999887432 2     2367999988643    23346678866555 599999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCc----------ccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          479 SLERCT-CSLDDLIQTYSDSSC----------NSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~----------~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      +|||+. |+|.+++........          ...+++..+..++.|+   |.|||+++++|||||    |++.++.+.+
T Consensus        86 ~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L  165 (283)
T cd05048          86 LFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKI  165 (283)
T ss_pred             EEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEE
Confidence            999997 699999987432111          1457788888999998   889999999999999    7888888777


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+.+
T Consensus       166 ~dfg~~~  172 (283)
T cd05048         166 SDFGLSR  172 (283)
T ss_pred             CCCccee
Confidence            7666544

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.45  E-value=3.2e-14  Score=143.63  Aligned_cols=117  Identities=13%  Similarity=0.071  Sum_probs=90.6

Q ss_pred             cccccCCceEEEeee-e------------------------cCchhHHHHHHHHHh---hhhHHHHHHHHhcCCCCCeeE
Q 042769          414 EIAKGSNGTVVYEGI-Y------------------------EGRPVAVKRLVRALH---DVAFKEIQNLIASDQHPNIVR  465 (549)
Q Consensus       414 ~LG~G~fG~V~~~~~-~------------------------~g~~VAVK~i~~~~~---~~~~~Ei~~L~~~l~HpNIVr  465 (549)
                      .||+|+||.||.... .                        ....||+|.+.....   ..+.+|+ .+++.++||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~-~~~~~l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETA-SLMSQVSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHH-HHHhcCCCCCeee
Confidence            699999999886321 1                        113578887765422   2344555 3456669999999


Q ss_pred             EeeeccCcceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          466 WYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       466 l~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      +++++......++|||||+ |+|..++..     ..+.+++.++..++.|+   |+|||+++|+|||||    |++.+|
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~-----~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~  154 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRK-----EKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLG  154 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccC
Confidence            9999999999999999998 589888865     23468889999999999   899999999999999    666544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.45  E-value=3.2e-14  Score=142.68  Aligned_cols=139  Identities=17%  Similarity=0.089  Sum_probs=107.1

Q ss_pred             eeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|.+.+.||+|+||.||.. ..     .++..||+|.+...    ....+.+|+..+.. ++||||+++++++......|
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05032           7 KITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSTGQPTL   85 (277)
T ss_pred             HeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHh-CCCCceeEEEEEEcCCCCcE
Confidence            3888899999999998763 22     23478999987632    12345678866555 59999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCC----cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSS----CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~----~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|||+. |+|.+++.......    ....+++..+..++.|+   |.|||+++++|||||    |++.+|.++...+.+
T Consensus        86 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~  165 (277)
T cd05032          86 VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGM  165 (277)
T ss_pred             EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCccc
Confidence            9999997 69999997633111    12346777888888898   889999999999999    888888877766665


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       166 ~~  167 (277)
T cd05032         166 TR  167 (277)
T ss_pred             ch
Confidence            44

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.45  E-value=3e-14  Score=142.47  Aligned_cols=133  Identities=18%  Similarity=0.185  Sum_probs=104.8

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|.+.++||+|+||.||.........||+|++....  ...+.+|++.+..+ +||||+++++++.. ...|++|||+. 
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~~~~~-~~~~lv~e~~~~   84 (262)
T cd05071           7 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSE-EPIYIVTEYMSK   84 (262)
T ss_pred             HeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhC-CCCCcceEEEEECC-CCcEEEEEcCCC
Confidence            489999999999999887533344569999887532  23567888766554 99999999998754 55799999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+|.+++....    ...+++..+..++.|+   |+|||+++++|||||    |++.+|.+.+..+++.
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~  149 (262)
T cd05071          85 GSLLDFLKGEM----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA  149 (262)
T ss_pred             CcHHHHHhhcc----ccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCce
Confidence            59999997622    2357888889999998   889999999999999    7788887776666554

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.45  E-value=3.4e-14  Score=140.33  Aligned_cols=127  Identities=23%  Similarity=0.280  Sum_probs=101.7

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cch
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSL  487 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL  487 (549)
                      ++||+|+||.||+....+++.+|+|.+...    ....+.+|+..+.. ++||||+++++++......+++|||+. |+|
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQ-YDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHh-CCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            379999999988865567888999977643    22346678866555 599999999999999999999999997 599


Q ss_pred             hhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          488 DDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       488 ~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      .+++...     ...+++..+..++.|+   |.|||+++++|||||    +++.++.+....+.+
T Consensus        80 ~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~  139 (250)
T cd05085          80 LSFLRKK-----KDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGM  139 (250)
T ss_pred             HHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCcc
Confidence            9988652     2357788888888888   889999999999999    778888766665543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.45  E-value=2.6e-14  Score=143.86  Aligned_cols=131  Identities=24%  Similarity=0.288  Sum_probs=107.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.||++ ...+|+.||+|++....     ...+.+|+..+..+ +||||+++++++......|+||||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQAC-QHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhC-CCCCCcceeeEEecCCeeEEEecc
Confidence            788899999999998874 55678999999776432     23566788665555 899999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +.++|.+++...     ...+++..++.++.|+   |+|||+.+++|+|||    +++.+|......+.+
T Consensus        81 ~~~~L~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~  145 (286)
T cd07832          81 MPSDLSEVLRDE-----ERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGL  145 (286)
T ss_pred             cCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeee
Confidence            966999998762     2468899999999998   889999999999999    777777766555543

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.45  E-value=3.6e-14  Score=147.44  Aligned_cols=135  Identities=19%  Similarity=0.256  Sum_probs=108.6

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~  476 (549)
                      .+++.|++.+.||+|+||.||.. +..+++.||+|++.+.     ......+|+..+..+ +||||+++++++.. ....
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~   85 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHL-RHENIISLSDIFISPLEDI   85 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhc-CCCCeeeEeeeEecCCCcE
Confidence            35666999999999999998884 6778999999977542     233566788665554 99999999998865 5578


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |++|||+.++|.++++.       ..+++..+..++.|+   |.|||+++|+|||||    |++.+|.+.+..+++.
T Consensus        86 ~lv~e~~~~~L~~~~~~-------~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~  155 (328)
T cd07856          86 YFVTELLGTDLHRLLTS-------RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLA  155 (328)
T ss_pred             EEEeehhccCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccc
Confidence            99999998899888764       347777888888888   889999999999999    7888888777666544

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.45  E-value=3.8e-14  Score=142.68  Aligned_cols=141  Identities=18%  Similarity=0.105  Sum_probs=105.3

Q ss_pred             eeeeeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ++.|++.+.||+|+||.||... .     .+++.||+|.+...    ....+.+|+..+.. ++||||+++++++.....
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~-l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHh-CCCCCeeeEEEEEcCCCC
Confidence            3458999999999999987632 1     23567999987532    22345678865554 599999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCc----ccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSC----NSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~----~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      .++||||+. |+|.++++..+....    ...++...+..++.|+   |.|||+.+++|||||    |+++++..+...+
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~df  163 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDF  163 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCC
Confidence            999999997 699999976331100    1234556677777787   889999999999999    7888887776665


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .+.+
T Consensus       164 g~~~  167 (277)
T cd05062         164 GMTR  167 (277)
T ss_pred             CCcc
Confidence            5543

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.44  E-value=2.3e-14  Score=142.76  Aligned_cols=132  Identities=19%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||+.....+..+|+|.+...  ..+.+.+|+..+.+ ++|+||+++++++. ....|++|||+. 
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~~~~~~~-~~~~~lv~e~~~~   84 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKK-LRHDKLVQLYAVVS-EEPIYIVTEYMSK   84 (260)
T ss_pred             HhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHh-cCCCceEEEEeEEC-CCCcEEEEEecCC
Confidence            48888999999999988865556778999987743  22356788866655 49999999999885 456899999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|.+++....    ...+++..+..++.|+   |.|||+++++|||||    +++.++.++...+.+
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~  148 (260)
T cd05070          85 GSLLDFLKDGE----GRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGL  148 (260)
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCcee
Confidence            59999987622    3457888899999998   889999999999999    778877766665554

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.44  E-value=5.5e-14  Score=141.65  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=106.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|++.+.||+|+||.||.+ ...+++.||+|++....     ...+.+|++.+..+ +|+||+++++++...+..+++||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQL-RHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhc-CCCCeeehhheEEECCEEEEEEe
Confidence            3889999999999998874 55678999999887532     23567888666555 89999999999999999999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+++++.+.+...     ...+++..+..++.|+   |.|||+.+++||||+    +++.+|..++..+.+.
T Consensus        81 ~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~  147 (288)
T cd07833          81 YVERTLLELLEAS-----PGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFA  147 (288)
T ss_pred             cCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecc
Confidence            9987544443331     3458889999999998   889999999999999    7788888776665543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.44  E-value=4.7e-14  Score=142.12  Aligned_cols=131  Identities=24%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|+..+.||+|+||.||.. ...+++.+|+|.+...    ....+.+|+..+. .++||||+++++++..+...|+||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS-QCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHH-hcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            4778889999999998874 5567889999976532    2334567776554 45999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +. ++|.+++..       ..+++..+..++.|+   +.|||+++++|+|||    +++.+|.+....+.+.
T Consensus        84 ~~~~~l~~~i~~-------~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~  148 (277)
T cd06641          84 LGGGSALDLLEP-------GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA  148 (277)
T ss_pred             CCCCcHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccc
Confidence            97 599988865       357888889999988   889999999999999    7888887766665544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.44  E-value=2.1e-14  Score=144.71  Aligned_cols=132  Identities=23%  Similarity=0.271  Sum_probs=106.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|++.+.||+|+||.||.+ ...+++.||+|++....     .+.+.+|+..+.. ++||||+++++++...+..|++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQ-LRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHh-cCCcchhhHHHhcccCCeEEEEEe
Confidence            3888899999999998874 44568999999876532     2345678865555 599999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+++ +|..+...      ...+++..+..++.|+   |.|||+.+++||||+    +++++|.+....+.+.
T Consensus        81 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~  147 (286)
T cd07846          81 FVDHTVLDDLEKY------PNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFA  147 (286)
T ss_pred             cCCccHHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeee
Confidence            9986 66665544      3458889999999998   889999999999999    7888887766655543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.44  E-value=1.5e-14  Score=145.55  Aligned_cols=133  Identities=24%  Similarity=0.220  Sum_probs=107.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|+..+.||+|+||.||.. ...+++.||+|.+...    ..+.+.+|+..+.+ ++||||+++++++..+...|+|||
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYITRYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHc-CCCCccHhhhcccccCCceEEEEE
Confidence            34778889999999998874 5567889999977632    23356678865544 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+. ++|.+++..       ..+++..+..++.|+   +.|||+++++|+||+    +++.+|.+....+.+++
T Consensus        83 ~~~~~~L~~~~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~  149 (277)
T cd06642          83 YLGGGSALDLLKP-------GPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAG  149 (277)
T ss_pred             ccCCCcHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccc
Confidence            998 599988854       357888888899888   889999999999999    78888887776666543

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.44  E-value=5.1e-14  Score=141.35  Aligned_cols=135  Identities=24%  Similarity=0.271  Sum_probs=104.5

Q ss_pred             ccccccCCceEEEe-eeecCc--hhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          413 TEIAKGSNGTVVYE-GIYEGR--PVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g~--~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +.||+|+||.||.. ...++.  .+|+|.+..    ...+.+.+|++.+.++.+||||+++++++...+..|++|||+. 
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            36899999998874 334454  467887663    2234566888777666689999999999999999999999997 


Q ss_pred             cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++......          .....+++..+..++.|+   |+|||+++++|||||    |++.++.++...++|.+
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~  160 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR  160 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCcc
Confidence            6999999763311          112347788889999988   899999999999999    88888887777776653

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.44  E-value=3e-14  Score=141.34  Aligned_cols=133  Identities=26%  Similarity=0.317  Sum_probs=108.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||.||.. ...+++.+|+|.+...   ..+.+.+|+..+.. ++||||+++++++......|++|||+
T Consensus         4 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           4 DYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKE-CRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             ceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHh-CCCCChhceEEEEEeCCEEEEEEeCC
Confidence            4889999999999998874 5567788999976532   23456778865544 59999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .| +|.+++...     ...+++..+..++.|+   |.|||+++++|||||    +++.+|.++...+.+.
T Consensus        83 ~~~~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  148 (262)
T cd06613          83 GGGSLQDIYQVT-----RGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVS  148 (262)
T ss_pred             CCCcHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccc
Confidence            85 999988762     2568899999999998   889999999999999    7888888777666543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.44  E-value=4.5e-14  Score=142.91  Aligned_cols=128  Identities=23%  Similarity=0.213  Sum_probs=101.5

Q ss_pred             cccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHH--HHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          414 EIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQ--NLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       414 ~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~--~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      .||+|+||.||.. ...+++.+|+|.+.+..      .....+|..  .+....+||||+.+++++...+..++||||+.
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999998874 55678999999765421      112223332  23344589999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++..      .+.+++..+..++.|+   |+|||+++|+|||||    |++.+|..+...+.+.+
T Consensus        81 ~~~L~~~i~~------~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~  145 (279)
T cd05633          81 GGDLHYHLSQ------HGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (279)
T ss_pred             CCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcce
Confidence             599998876      4568999999999999   899999999999999    88888888777777654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.44  E-value=3e-14  Score=152.09  Aligned_cols=134  Identities=22%  Similarity=0.164  Sum_probs=109.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      ..+..+||-|.||.||-. -+.....||||.++..  ..+.+++|...| +.++|||+|+|+|+|..+..+|||.|||. 
T Consensus       269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvM-KeikHpNLVqLLGVCT~EpPFYIiTEfM~y  347 (1157)
T KOG4278|consen  269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM-KEIKHPNLVQLLGVCTHEPPFYIITEFMCY  347 (1157)
T ss_pred             eeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHH-HhhcCccHHHHhhhhccCCCeEEEEecccC
Confidence            455679999999997652 2334578999999875  345688888555 55599999999999999999999999985 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+||+.|.    ...++.-..+.++.||   ++||..+++|||||-    |+.+|.-.+..+++|.|
T Consensus       348 GNLLdYLRecn----r~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsR  413 (1157)
T KOG4278|consen  348 GNLLDYLRECN----RSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSR  413 (1157)
T ss_pred             ccHHHHHHHhc----hhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhh
Confidence            99999999865    3456666777888899   999999999999998    89998888888777765

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.44  E-value=2.5e-14  Score=145.49  Aligned_cols=134  Identities=25%  Similarity=0.255  Sum_probs=107.3

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-------
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD-------  474 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-------  474 (549)
                      .|++.+.||+|+||.||+. ...+|+.||+|++....     .....+|++.+..+ +||||+++++++....       
T Consensus         8 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~~~~~~~~~~~~~~~~~   86 (302)
T cd07864           8 KFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQL-NHRNIVNLKEIVTDKQDALDFKK   86 (302)
T ss_pred             hhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhC-CCCCeeeeeheecCcchhhhccc
Confidence            3889999999999998884 55678999999876431     12345788665555 9999999999987655       


Q ss_pred             ---eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          475 ---FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       475 ---~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                         ..|+++||++++|.+++...     ...+++..++.++.|+   |+|||+.+|+|||||    +++.++..++..+.
T Consensus        87 ~~~~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg  161 (302)
T cd07864          87 DKGAFYLVFEYMDHDLMGLLESG-----LVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFG  161 (302)
T ss_pred             cCCcEEEEEcccCccHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccc
Confidence               79999999999888887651     2468899999999999   899999999999999    78888877776665


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       162 ~~~  164 (302)
T cd07864         162 LAR  164 (302)
T ss_pred             ccc
Confidence            543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.44  E-value=6.8e-14  Score=142.06  Aligned_cols=132  Identities=21%  Similarity=0.227  Sum_probs=103.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|++|.||+. ...+|+.||+|.+....     ...+.+|+..+..+ +||||+++++++......|+||||
T Consensus         4 y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   82 (294)
T PLN00009          4 YEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEM-QHGNIVRLQDVVHSEKRLYLVFEY   82 (294)
T ss_pred             eEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhc-cCCCEeeEEEEEecCCeEEEEEec
Confidence            888999999999998874 55678999999886532     23456788666555 999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLLLSL  545 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l~~L  545 (549)
                      ++++|.+++....    ...+++..+..++.|+   |+|||+++++|||||    +++.+ +..++..+.+
T Consensus        83 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~  149 (294)
T PLN00009         83 LDLDLKKHMDSSP----DFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGL  149 (294)
T ss_pred             ccccHHHHHHhCC----CCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEccccc
Confidence            9989988886522    2235677788888888   899999999999999    66643 3444544443

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.44  E-value=3.6e-14  Score=144.47  Aligned_cols=138  Identities=20%  Similarity=0.163  Sum_probs=104.2

Q ss_pred             eeeecccccccCCceEEEee-ee------------cC--chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEee
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-IY------------EG--RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYG  468 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~~------------~g--~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g  468 (549)
                      +|++.+.||+|+||.||.+. ..            ++  ..||+|.+...    ....+.+|++.+.++ +||||+++++
T Consensus         6 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~   84 (295)
T cd05097           6 QLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRL-KNPNIIRLLG   84 (295)
T ss_pred             hCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCcCeEEE
Confidence            48899999999999988732 11            12  34889877642    233566888766554 9999999999


Q ss_pred             eccCcceEEEEecccc-cchhhhhhhcccC------CcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          469 VENDKDFVYLSLERCT-CSLDDLIQTYSDS------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       469 ~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      ++......++|||||. ++|.+++......      .....+++..+..++.|+   |+|||+++++|||||    |++.
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~  164 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGN  164 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcC
Confidence            9999999999999997 5999998652100      011235677788888888   899999999999999    7888


Q ss_pred             CCCCchhhhhhh
Q 042769          535 DGHPSPLLLSLM  546 (549)
Q Consensus       535 ~G~p~~~l~~Lm  546 (549)
                      ++.+++..+.+.
T Consensus       165 ~~~~kl~dfg~~  176 (295)
T cd05097         165 HYTIKIADFGMS  176 (295)
T ss_pred             CCcEEecccccc
Confidence            887776665554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.44  E-value=5.5e-14  Score=141.65  Aligned_cols=134  Identities=23%  Similarity=0.263  Sum_probs=105.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCc----hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ..|++.+.||+|+||.||+. ...+|+    .+|+|.+...    ....+.+|+..+.++ +||||+++++++.. ...+
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASV-DHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhC-CCCCcceEEEEEec-CceE
Confidence            34888999999999998874 333443    5888877643    233566788666554 99999999999987 7889


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|||+. |+|.+++...     ...+++..+..++.|+   |+|||+++++|||||    |++.++.+....+.+++
T Consensus        85 ~v~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~  157 (279)
T cd05057          85 LITQLMPLGCLLDYVRNH-----KDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (279)
T ss_pred             EEEecCCCCcHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccc
Confidence            9999997 6999998762     2358889999999999   899999999999999    78888877766665543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.44  E-value=5.7e-14  Score=140.04  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=104.7

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|.+...||+|+||.||+.....+..+|+|++...  ..+.+.+|+..+.. ++||||+++++++.. +..+++|||+. 
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~-~~~~~v~e~~~~   84 (260)
T cd05069           7 SLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKK-LRHDKLVPLYAVVSE-EPIYIVTEFMGK   84 (260)
T ss_pred             HeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHh-CCCCCeeeEEEEEcC-CCcEEEEEcCCC
Confidence            38888999999999988754444557899977643  22356678866555 599999999998854 56889999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.++++...    ...+++..+..++.|+   |.|||+.+++|||||    |++.++.+.+..+++.+
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~  150 (260)
T cd05069          85 GSLLDFLKEGD----GKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLAR  150 (260)
T ss_pred             CCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccce
Confidence            59999997622    2347788888899888   889999999999999    78888887776666543

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.2e-14  Score=155.23  Aligned_cols=132  Identities=22%  Similarity=0.222  Sum_probs=108.9

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|.+...||.|+||+||++ .+.++-..|.|.|...   ..+...-||.+|..+ +||+||+|++.|...+.++|+.||
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~C-dHP~ivkLl~ayy~enkLwiliEF  110 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAEC-DHPVIVKLLSAYYFENKLWILIEF  110 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcC-CChHHHHHHHHHhccCceEEEEee
Confidence            34778889999999999984 6777778888988743   344567888666554 899999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      |.| -....+-.     ....|+++++..++.|+   |.|||+++|||||||    |+..+|...+..++
T Consensus       111 C~GGAVDaimlE-----L~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFG  175 (1187)
T KOG0579|consen  111 CGGGAVDAIMLE-----LGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFG  175 (1187)
T ss_pred             cCCchHhHHHHH-----hccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeeccc
Confidence            985 67666665     24679999999999998   889999999999999    88888887776654

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.44  E-value=3.9e-14  Score=144.71  Aligned_cols=133  Identities=24%  Similarity=0.313  Sum_probs=109.3

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.+.||.|+||.||.. +..+++.||+|.+...   ..+.+.+|+..+. .++||||+++++++......|+|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMK-ELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHH-hcCCCceeeeeeeEecCceEEEEEEe
Confidence            45999999999999998874 6678999999977542   2334567885554 45999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +. ++|.+++..       ..+++..+..++.|+   |.|||+++++|||||    +++.+|.+.+..+.+.+
T Consensus        98 ~~~~~L~~~~~~-------~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~  163 (296)
T cd06655          98 LAGGSLTDVVTE-------TCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCA  163 (296)
T ss_pred             cCCCcHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccch
Confidence            97 599988865       358889999999988   889999999999999    78888887777665543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.44  E-value=4.2e-14  Score=142.68  Aligned_cols=133  Identities=22%  Similarity=0.237  Sum_probs=107.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |++.+.||+|+||.||+. ...++..+|+|.+...   ......+|+..+..+ +||||+++++++......|++|||+.
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l-~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASC-DHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHC-CCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            677889999999998874 5566788888876532   233456788655554 99999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|..++..     ....+++..+..++.|+   |.|||+.+++|||||    |++.+|......+.+++
T Consensus        86 ~~~l~~~~~~-----~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~  151 (282)
T cd06643          86 GGAVDAVMLE-----LERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSA  151 (282)
T ss_pred             CCcHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccc
Confidence             588887764     13468889999999998   889999999999999    78888887777666543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.44  E-value=5.3e-14  Score=142.16  Aligned_cols=132  Identities=20%  Similarity=0.211  Sum_probs=101.3

Q ss_pred             eeecccccccCCceEEEe-eeecCc----hhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.+.||+|+||.||.. ...+++    .+|+|.+....    ...+..|+..+ +.++||||+++++++.. ...+++
T Consensus         9 ~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l-~~l~h~~iv~~~~~~~~-~~~~~i   86 (279)
T cd05111           9 LRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAM-GSLDHAYIVRLLGICPG-ASLQLV   86 (279)
T ss_pred             ceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHH-hcCCCCCcceEEEEECC-CccEEE
Confidence            888899999999998774 334454    47788775321    22334455344 45599999999999864 457789


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||+. |+|.+++...     ...+++..+..++.|+   |+|||+++++|||||    |++.++.++...+++.+
T Consensus        87 ~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~  157 (279)
T cd05111          87 TQLSPLGSLLDHVRQH-----RDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVAD  157 (279)
T ss_pred             EEeCCCCcHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccce
Confidence            99997 7999999762     2458888999999999   899999999999999    88888888877776554

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.43  E-value=4.7e-14  Score=142.17  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=107.5

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccC------cceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVEND------KDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~------~~~~yLV  479 (549)
                      |++.+.||+|+||.||. ....+++.+|+|++...  .......|+..+....+||||+++++++..      ....|++
T Consensus        18 ~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv   97 (282)
T cd06636          18 FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLV   97 (282)
T ss_pred             hhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEE
Confidence            88889999999999888 45667899999976532  223456777666666689999999999853      4578999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||. |+|.+++...+    ...+++..+..++.|+   |.|||+.+|+|||||    +++.+|...+..+.+++
T Consensus        98 ~e~~~~~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~  169 (282)
T cd06636          98 MEFCGAGSVTDLVKNTK----GNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  169 (282)
T ss_pred             EEeCCCCcHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchh
Confidence            99997 59999987633    3457788888888888   899999999999999    78888887776665543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.43  E-value=8.4e-14  Score=138.02  Aligned_cols=132  Identities=21%  Similarity=0.347  Sum_probs=106.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.+|. .+..+|+.||+|++...     ....+.+|+..+.. ++||||+++++++...+..|+||||
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSN-MKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHh-CCCCCeeeeEeeecCCCeEEEEEec
Confidence            78889999999999887 46677899999966532     23356778866554 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +. ++|.+++....    ...+++..+..++.|+   |.|||+++++|+||+    |++.++......+.+
T Consensus        81 ~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~  147 (256)
T cd08218          81 CEGGDLYKKINAQR----GVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGI  147 (256)
T ss_pred             CCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccc
Confidence            97 59999987622    2357888888999998   889999999999999    777777766555443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.43  E-value=3.3e-14  Score=142.32  Aligned_cols=134  Identities=25%  Similarity=0.210  Sum_probs=110.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|.+.+.||+|+||.||.. ...+++.||+|++...      ......+|...+..+.+||||+++++++...+..+++|
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            3888899999999998874 5567899999977642      12345677766655533999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++. ++|.+++..      ...+++..+..++.|+   |.|||+++++|+||+    +++.+|+.....+.+++
T Consensus        82 e~~~~~~L~~~l~~------~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~  150 (280)
T cd05581          82 EYAPNGELLQYIRK------YGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAK  150 (280)
T ss_pred             cCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCcccc
Confidence            9996 699999987      4468999999999999   889999999999999    78888887777666543

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.43  E-value=5.4e-14  Score=142.64  Aligned_cols=140  Identities=17%  Similarity=0.116  Sum_probs=104.4

Q ss_pred             eeeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|++.+.||+|+||.||.. ..     ..+..||+|.+...    ....+.+|+..+ +.++||||+++++++......
T Consensus         6 ~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           6 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVM-KGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHH-HhCCCCCeeeEEEEEcCCCCc
Confidence            34889999999999998873 22     12457999976532    122355677555 445999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCc----ccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSC----NSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~----~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      |++|||+. |+|.++++.......    ...++...+..++.|+   |.|||+++|+|||||    |++.++.+....+.
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg  164 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG  164 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCC
Confidence            99999997 699999976332111    1234556677888888   899999999999999    78888877776666


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +.|
T Consensus       165 ~~~  167 (288)
T cd05061         165 MTR  167 (288)
T ss_pred             ccc
Confidence            544

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.43  E-value=3.3e-14  Score=147.74  Aligned_cols=136  Identities=26%  Similarity=0.315  Sum_probs=107.6

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFV  476 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~  476 (549)
                      +.+.|++.+.||+|+||.||.. ...+|+.+|+|++...     ......+|+..+.++.+||||+++++++...  ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            4445999999999999998774 4557889999977532     2234567886554444999999999987643  368


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+||||+.++|.+++..      . .+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+.+.+
T Consensus        85 ~lv~e~~~~~L~~~~~~------~-~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~  155 (337)
T cd07852          85 YLVFEYMETDLHAVIRA------N-ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLAR  155 (337)
T ss_pred             EEEecccccCHHHHHhc------C-CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchh
Confidence            99999999999998866      2 57778888888888   899999999999999    88899888777666544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.43  E-value=1.6e-13  Score=150.67  Aligned_cols=133  Identities=17%  Similarity=0.267  Sum_probs=102.4

Q ss_pred             CceeccCC--CccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhh--------hhcCCC
Q 042769            1 VSWTFGTG--TPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDY--------VKTAPH   69 (549)
Q Consensus         1 ~~W~f~tg--~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~--------v~~sP~   69 (549)
                      +.|+|.++  ..+.++              |.+..+.+|.++.|+.|||+|+ +|+++|.+++...        +...++
T Consensus        41 ~~W~~~~~~~~~~~~s--------------Pvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~  106 (488)
T cd00216          41 VAWTFSTGDERGQEGT--------------PLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVA  106 (488)
T ss_pred             eeEEEECCCCCCcccC--------------CEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcE
Confidence            47999998  567777              8888888888989999999999 9999999988653        222233


Q ss_pred             cccc-cceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEE
Q 042769           70 ITEE-GAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLF  148 (549)
Q Consensus        70 ~~~d-g~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  148 (549)
                      +. + +.||+|+.++.+||+|++||+++|++.....-       ..               .....+++.+.   .++||
T Consensus       107 ~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~-------~~---------------~~~i~ssP~v~---~~~v~  160 (488)
T cd00216         107 YW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQV-------PP---------------GYTMTGAPTIV---KKLVI  160 (488)
T ss_pred             Ec-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCc-------Cc---------------ceEecCCCEEE---CCEEE
Confidence            44 5 89999999999999999999999999886410       00               00011222321   27899


Q ss_pred             EEcc---------cceeecccCCCCCceeeeeee
Q 042769          149 ITRT---------DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       149 i~r~---------d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      +|..         ++.|+|||++||+++|++.+.
T Consensus       161 vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~  194 (488)
T cd00216         161 IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT  194 (488)
T ss_pred             EeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence            9874         578999999999999999885

The alignment model contains an 8-bladed beta-propeller.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.43  E-value=6.1e-14  Score=138.90  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=91.9

Q ss_pred             ccccccCCceEEEe-eeecC----------chhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          413 TEIAKGSNGTVVYE-GIYEG----------RPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~g----------~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.||+|+||.||.. ...++          ..+++|.+....  ...+.+|+..+ +.++||||+++++++.. ...++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLM-SQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHH-HcCCCcchhheeeEEec-CCcEEE
Confidence            46999999998774 33333          357888776442  34556777555 55599999999999888 778999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      |||+. |+|.+++....     ..+++..+..++.|+   |+|||+++|+|||||    |++.++
T Consensus        79 ~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~  138 (259)
T cd05037          79 EEYVKFGPLDVFLHREK-----NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYG  138 (259)
T ss_pred             EEcCCCCcHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCc
Confidence            99997 69999998722     268888899999998   899999999999999    777776

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.43  E-value=4.4e-14  Score=140.17  Aligned_cols=133  Identities=25%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||.+ ...|+.||+|.+....  .+.+.+|+..+..+ +|+||+++++++......+++|||++ 
T Consensus         7 ~~~~~~~ig~g~~g~v~~~-~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~~~~   84 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLG-DYRGQKVAVKCLKDDSTAAQAFLAEASVMTTL-RHPNLVQLLGVVLQGNPLYIVTEYMAK   84 (256)
T ss_pred             hccceeeeecCCCceEEEE-EecCcEEEEEEeccchhHHHHHHHHHHHHHhc-CCcceeeeEEEEcCCCCeEEEEEecCC
Confidence            3888899999999987653 4568999999887542  34567888665554 99999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++|.++++...    ...+++..+..++.|+   |.|||+++++|||||    +++.+|......+.+.
T Consensus        85 ~~L~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~  149 (256)
T cd05039          85 GSLVDYLRSRG----RAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLA  149 (256)
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccc
Confidence            59999997622    2368899999999999   889999999999999    7888887766655543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.43  E-value=4.5e-14  Score=142.54  Aligned_cols=128  Identities=22%  Similarity=0.226  Sum_probs=103.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.++||+|+||.||+. +..+++.||+|.+...    ....+.+|+..+.. ++||||+++++++...+..+++|||+
T Consensus         3 ~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           3 IQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYK-CDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             chheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHh-CCCCCeeeEEEEEEECCEEEEEEecC
Confidence            778889999999998884 6678899999977532    23346678866544 49999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++ +|..+.          .+++..+..++.|+   |.|||+++|+|||||    |++.+|.+.+..+++.+
T Consensus        82 ~~~~l~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~  143 (279)
T cd06619          82 DGGSLDVYR----------KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVST  143 (279)
T ss_pred             CCCChHHhh----------cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcce
Confidence            85 775432          35677888888888   889999999999999    88899888877766543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.43  E-value=5.1e-14  Score=139.56  Aligned_cols=132  Identities=23%  Similarity=0.303  Sum_probs=105.7

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||.||+.....++.+|+|.+....  ...+.+|++.+..+ +||||+++++++......+++|||+. |
T Consensus         6 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~~~~~   84 (256)
T cd05112           6 LTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKL-SHPKLVQLYGVCTERSPICLVFEFMEHG   84 (256)
T ss_pred             eEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhC-CCCCeeeEEEEEccCCceEEEEEcCCCC
Confidence            78889999999999887544557789999776431  23567788666554 99999999999999999999999998 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|.+++...     ...+++..+..++.|+   |+|||+++++|||||    +++.++......+.+.
T Consensus        85 ~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~  147 (256)
T cd05112          85 CLSDYLRAQ-----RGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMT  147 (256)
T ss_pred             cHHHHHHhC-----ccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcce
Confidence            999998762     2457888888888888   889999999999999    7777776666555543

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.43  E-value=6.5e-14  Score=139.92  Aligned_cols=132  Identities=22%  Similarity=0.239  Sum_probs=105.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHH--------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~y  477 (549)
                      |.+.+.||+|+||.||.. ...+++.||+|.+..        .....+.+|+..+..+ +||||+++++++.+.  ...+
T Consensus         4 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l-~h~~i~~~~~~~~~~~~~~~~   82 (264)
T cd06653           4 WRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL-RHDRIVQYYGCLRDPEEKKLS   82 (264)
T ss_pred             eeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHc-CCCCcceEEEEEEcCCCCEEE
Confidence            888999999999998874 567789999996531        1223566788665555 999999999998654  4688


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|||++ ++|.+++..      ...+++..+..++.|+   |.|||+++++|||||    +++.+|.+....+.+.+
T Consensus        83 ~v~e~~~~~~L~~~~~~------~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~  154 (264)
T cd06653          83 IFVEYMPGGSIKDQLKA------YGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASK  154 (264)
T ss_pred             EEEEeCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccc
Confidence            9999997 599999876      4457888899999998   889999999999999    78888877766665543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.43  E-value=4.8e-14  Score=145.39  Aligned_cols=134  Identities=25%  Similarity=0.318  Sum_probs=108.4

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|...+.||+|+||.||+. ...++..+|+|++...      ....+.+|+..+..+ +|||++++++++......|+|
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv  103 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRI-KHPNSIEYKGCYLREHTAWLV  103 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhC-CCCCEEEEEEEEeeCCeEEEE
Confidence            34778889999999998874 5667899999987532      223466788665554 999999999999999999999


Q ss_pred             ecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||+.|+|.+++...     ...+++..+..++.|+   |.|||+++|+||||+    +++.+|.+....+.++
T Consensus       104 ~e~~~g~l~~~~~~~-----~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~  172 (317)
T cd06635         104 MEYCLGSASDLLEVH-----KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSA  172 (317)
T ss_pred             EeCCCCCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCc
Confidence            999999988887652     3458888999999988   899999999999999    7788887777666554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.43  E-value=2.9e-14  Score=140.96  Aligned_cols=131  Identities=26%  Similarity=0.294  Sum_probs=105.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |+..+.||+|+||.||.+ ...+++.||+|.+...        ....+.+|+..+.. ++|+||+++++++......|++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~-~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSK-LQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHh-cCCCCchheeeeEecCCeEEEE
Confidence            667789999999998875 4457889999965431        23356678865544 5999999999999999999999


Q ss_pred             eccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||++| +|.+++..      ...+++..+..++.|+   |.|||+.+++||||+    +++.++.+++..+.+.
T Consensus        81 ~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~  149 (258)
T cd06632          81 LELVPGGSLAKLLKK------YGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMA  149 (258)
T ss_pred             EEecCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccc
Confidence            999985 99999977      3457888888888888   889999999999999    7788887776665543

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>PHA02988 hypothetical protein; Provisional

Probab=99.43  E-value=5e-14  Score=143.24  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=102.5

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceEEEEecc
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFVYLSLER  482 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~yLVmE~  482 (549)
                      ..||+|++|.||. +..+|+.||||.+....      .+.+.+|+..|.++ +||||+++++++.+    ....+++|||
T Consensus        26 ~~i~~g~~~~v~~-~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYK-GIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRI-DSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEE-EEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhc-CCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            5789999998554 56789999999887531      23455888666555 99999999999876    4578999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+ |+|.+++..      ...+++.....++.|+   |.|||+ .+++|||||    |++.+|.++...+++.+
T Consensus       104 ~~~g~L~~~l~~------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~  171 (283)
T PHA02988        104 CTRGYLREVLDK------EKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEK  171 (283)
T ss_pred             CCCCcHHHHHhh------CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHh
Confidence            98 599999977      4467888888999888   889997 489999999    88899988877766654

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.43  E-value=6.5e-14  Score=142.27  Aligned_cols=138  Identities=24%  Similarity=0.260  Sum_probs=108.0

Q ss_pred             eeecccccccCCceEEEee------eecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.+.||+|+||.||...      ..++..+|+|.+...   ..+.+.+|++.+.+ ++||||+++++++...+..++|
T Consensus         7 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv   85 (291)
T cd05094           7 IVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTN-LQHEHIVKFYGVCGDGDPLIMV   85 (291)
T ss_pred             eEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhc-CCCCCcceEEEEEccCCceEEE
Confidence            8888999999999988742      134556888877643   22456788866555 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          480 LERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      |||++ ++|.+++..+...          .....+++..++.++.|+   |+|||+++|+|||||    |++.++..+..
T Consensus        86 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~  165 (291)
T cd05094          86 FEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIG  165 (291)
T ss_pred             EecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEEC
Confidence            99997 6999999763310          112347888899999999   889999999999999    88888887777


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+.+.+
T Consensus       166 dfg~a~  171 (291)
T cd05094         166 DFGMSR  171 (291)
T ss_pred             CCCccc
Confidence            666543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.43  E-value=2.6e-14  Score=144.38  Aligned_cols=134  Identities=23%  Similarity=0.234  Sum_probs=107.8

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.. ...+++.||+|.+...    ....+.+|+..+.. ++||||+++++++...+..|++||||
T Consensus         3 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           3 IEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHK-AVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHh-cCCCcHHhhhhheecCCeEEEEEeec
Confidence            788899999999998874 5567899999976532    23456688866655 49999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +| +|.+++....   ....+++..+..++.|+   |.|||+ ++|+|||||    |++.+|......+++.
T Consensus        82 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  150 (286)
T cd06622          82 DAGSLDKLYAGGV---ATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVS  150 (286)
T ss_pred             CCCCHHHHHHhcc---ccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCc
Confidence            85 9988887621   12368899999999998   889996 699999999    7788887776665543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.43  E-value=6.9e-14  Score=138.51  Aligned_cols=131  Identities=21%  Similarity=0.267  Sum_probs=102.8

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||. .+..+++.||+|++...     ..+...+|+..+ +.++|+|++++++.+.. ....|++||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l-~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           2 YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLL-SQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             ceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHH-HhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            78899999999999887 45667889999977543     123455677555 44599999999988764 446899999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      |++ ++|.+++....    ...+++..+..++.|+   ++|||+++++|||||    +++.++...+..+.
T Consensus        81 ~~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~  147 (257)
T cd08223          81 FCEGGDLYHKLKEQK----GKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLG  147 (257)
T ss_pred             ccCCCcHHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEeccc
Confidence            998 59999987632    3458889999999998   889999999999999    77777766555444

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.43  E-value=5.6e-14  Score=142.50  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=105.6

Q ss_pred             eeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |++.+.||+|+||.||+.. .     .....+|+|.+...    ....+.+|+..+.. ++||||+++++++...+..++
T Consensus         2 ~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           2 LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQ-VNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             ccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhh-CCCCCEeeEEEEEecCCCcEE
Confidence            7788999999999988732 1     12356888876532    23456788866554 599999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC------------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----cc
Q 042769          479 SLERCT-CSLDDLIQTYSDS------------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW  532 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~------------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll  532 (549)
                      +|||+. |+|.+++......                  .....+++..+..++.|+   |+|||+++++|||||    |+
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill  160 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLV  160 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEE
Confidence            999998 6999998763211                  112347778888999998   889999999999999    78


Q ss_pred             ccCCCCchhhhhhhh
Q 042769          533 KADGHPSPLLLSLMR  547 (549)
Q Consensus       533 ~~~G~p~~~l~~Lmr  547 (549)
                      +.++.+++..+.+.+
T Consensus       161 ~~~~~~kl~dfg~~~  175 (290)
T cd05045         161 AEGRKMKISDFGLSR  175 (290)
T ss_pred             cCCCcEEeccccccc
Confidence            888877776666543

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.43  E-value=3.5e-14  Score=143.58  Aligned_cols=131  Identities=18%  Similarity=0.267  Sum_probs=106.9

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||+||. ....+|+.||+|++...    ....+.+|++.+..+ +||||+++++++......|+||||+
T Consensus         7 ~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~   85 (284)
T cd06620           7 LETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHEC-RSPYIVSFYGAFLNENNICMCMEFM   85 (284)
T ss_pred             HHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHc-CCCCcceEeeeEecCCEEEEEEecC
Confidence            88889999999999887 45567889999865532    234566888766555 9999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + |+|.+++..      .+.+++..+..++.|+   |.|||+ .+++|||||    +++.++.+....+.+.
T Consensus        86 ~~~~L~~~~~~------~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~  151 (284)
T cd06620          86 DCGSLDRIYKK------GGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVS  151 (284)
T ss_pred             CCCCHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcc
Confidence            8 599988876      4568888999999888   889996 689999999    7788877766665544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.43  E-value=2.1e-13  Score=144.46  Aligned_cols=136  Identities=15%  Similarity=0.112  Sum_probs=99.3

Q ss_pred             cccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhcCCCcccccceeecceeeEEEEEEcccccee
Q 042769           29 SELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLI   96 (549)
Q Consensus        29 ~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~   96 (549)
                      |.+..+.+|.+..+|.+|++|. +|.+.|.+.+..           .+.++|.+. +|.||+++.++.+|++|++||+++
T Consensus       186 p~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       186 PVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             CEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEE
Confidence            5565667788889999999999 999999876532           145789887 899999999999999999999999


Q ss_pred             eecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee-eehh
Q 042769           97 RTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT-VAEI  175 (549)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~-~~~~  175 (549)
                      |+......                             ..+..    ..+.||++..|+.|+++|+.+|+++|+.+ ....
T Consensus       265 W~~~~~~~-----------------------------~~p~~----~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~  311 (377)
T TIGR03300       265 WKRDASSY-----------------------------QGPAV----DDNRLYVTDADGVVVALDRRSGSELWKNDELKYR  311 (377)
T ss_pred             EeeccCCc-----------------------------cCceE----eCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence            98864320                             11111    12799999999999999999999999984 4433


Q ss_pred             hhhhhccccCCcccccccccc-ccc
Q 042769          176 GYAFLCQDFENPFIGATMNTS-YEL  199 (549)
Q Consensus       176 ~a~~~~~~~~~~~~~~~~~~~-~~l  199 (549)
                      ....|... ++..++.+.++. +.+
T Consensus       312 ~~ssp~i~-g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       312 QLTAPAVV-GGYLVVGDFEGYLHWL  335 (377)
T ss_pred             ccccCEEE-CCEEEEEeCCCEEEEE
Confidence            33444442 223343344444 444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.43  E-value=7e-14  Score=139.14  Aligned_cols=125  Identities=25%  Similarity=0.272  Sum_probs=99.0

Q ss_pred             cccccCCceEEEe---eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          414 EIAKGSNGTVVYE---GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       414 ~LG~G~fG~V~~~---~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +||+|+||.||..   ...++..+|+|++...     ..+.+.+|+..+ +.++||||+++++++.. +..+++|||++ 
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVM-QQLDNPYIVRMIGICEA-ESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHH-HhCCCCCcceEEEEEcC-CCcEEEEecCCC
Confidence            6899999998873   3456788999987632     233566777555 44599999999998864 46789999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+|.+++..      ...+++..+..++.|+   |+|||+++|+|||||    |++.++..+...+.+.
T Consensus        80 ~~L~~~l~~------~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~  142 (257)
T cd05116          80 GPLNKFLQK------NKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLS  142 (257)
T ss_pred             CcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccc
Confidence            699999976      4468899999999999   889999999999999    7788877666665544

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.43  E-value=7.7e-14  Score=139.39  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=104.7

Q ss_pred             eeeecccccccCCceEEEe-eeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      .|+..+.||+|+||.||+. ...++   ..+|+|.+...    ..+.+..|+..+ +.++||||+++++++...+..|++
T Consensus         6 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           6 HITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIM-GQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH-hcCCCCCeeEEEEEEccCCCcEEE
Confidence            3778899999999998874 33333   36899887643    233566788555 455999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||++ ++|.+++...     ...+++..+..++.|+   |+|||+.+++|||||    |++.++...+..+.+.
T Consensus        85 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~  154 (268)
T cd05063          85 TEYMENGALDKYLRDH-----DGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLS  154 (268)
T ss_pred             EEcCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccc
Confidence            99998 5999998762     2457888899999988   899999999999999    7777777666655544

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.42  E-value=3.6e-14  Score=145.42  Aligned_cols=132  Identities=28%  Similarity=0.363  Sum_probs=106.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHHh-----hhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH-----DVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~-----~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVm  480 (549)
                      |++.+.||+|+||.||+. ...+|+.||+|.+.....     ....+|+..+.++ +|+||+++++++...  +..++||
T Consensus         9 y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~lv~   87 (309)
T cd07845           9 FEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNL-RHPNIVELKEVVVGKHLDSIFLVM   87 (309)
T ss_pred             eeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhC-CCCCCcceEEEEecCCCCeEEEEE
Confidence            999999999999998874 566799999998764321     1345788666554 999999999998755  4689999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||+.++|.+++...     ...+++..+..++.|+   |+|||+++++|||||    |++.+|...+..+.+.
T Consensus        88 e~~~~~l~~~l~~~-----~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~  155 (309)
T cd07845          88 EYCEQDLASLLDNM-----PTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLA  155 (309)
T ss_pred             ecCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcccee
Confidence            99999999888762     2468889999999999   889999999999999    7888887666655543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.42  E-value=6.5e-14  Score=141.56  Aligned_cols=128  Identities=23%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             cccccCCceEEEe-eeecCchhHHHHHHHHHh------hhhHHHHH--HHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          414 EIAKGSNGTVVYE-GIYEGRPVAVKRLVRALH------DVAFKEIQ--NLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       414 ~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~------~~~~~Ei~--~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      .||+|+||.||.. +..+++.||+|.+.+...      .....|..  .+.+...||||+++++++...+..|+||||+.
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            4899999998874 566789999997764311      11223321  23334589999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++..      .+.+++..+..++.|+   |.|||+.+|+|||||    |++.++..++..+++.+
T Consensus        81 g~~L~~~l~~------~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~  145 (278)
T cd05606          81 GGDLHYHLSQ------HGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLAC  145 (278)
T ss_pred             CCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCcc
Confidence             599888866      4568999999999998   889999999999999    78888887777776654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.42  E-value=3.1e-14  Score=143.24  Aligned_cols=135  Identities=21%  Similarity=0.307  Sum_probs=109.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||+||.. ...+++.||+|++....    .....+|+..+.++.+||||+++++++..++..|+||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            567789999999998774 44568899999877542    1234568877766634999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|+|.+++....    ...+++..+..++.|+   |.|||+++++|+||+    +++.+|.+....+++++
T Consensus        81 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~  147 (283)
T cd07830          81 EGNLYQLMKDRK----GKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAR  147 (283)
T ss_pred             CCCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccce
Confidence            889999887622    2468889999999999   889999999999999    78888888877766553

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.42  E-value=4.8e-14  Score=142.95  Aligned_cols=138  Identities=20%  Similarity=0.147  Sum_probs=106.5

Q ss_pred             eeecccccccCCceEEEe-eee----------------cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIY----------------EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWY  467 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~----------------~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~  467 (549)
                      |++.+.||+|+||.||+. ...                .+..||+|.+...    ..+.+.+|++.+..+ +||||++++
T Consensus         7 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~   85 (296)
T cd05051           7 LNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRL-SDPNIARLL   85 (296)
T ss_pred             CcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhc-CCCCEeEEE
Confidence            888999999999998873 222                1245788877643    234566788666555 999999999


Q ss_pred             eeccCcceEEEEecccc-cchhhhhhhcccC-----CcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          468 GVENDKDFVYLSLERCT-CSLDDLIQTYSDS-----SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       468 g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~-----~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      +++..++..+++||++. ++|.+++......     .....+++..++.++.|+   |+|||+++++|||||    |++.
T Consensus        86 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~  165 (296)
T cd05051          86 GVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGK  165 (296)
T ss_pred             EEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecC
Confidence            99999999999999997 5999999773311     011257888899999998   899999999999999    7777


Q ss_pred             CCCCchhhhhhhh
Q 042769          535 DGHPSPLLLSLMR  547 (549)
Q Consensus       535 ~G~p~~~l~~Lmr  547 (549)
                      ++......+.+.+
T Consensus       166 ~~~~~l~dfg~~~  178 (296)
T cd05051         166 NYTIKIADFGMSR  178 (296)
T ss_pred             CCceEEcccccee
Confidence            7777666665543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.42  E-value=1.1e-13  Score=139.29  Aligned_cols=128  Identities=20%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             eeeecccccccCCceEEEe-eee-----cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIY-----EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~-----~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|.+.+.||+|+||.||+. ...     ++..||+|.+...    ....+.+|+..+.. ++|+||+++++++......+
T Consensus         7 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~   85 (277)
T cd05036           7 SITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSK-FNHQNIVRLIGVSFERLPRF   85 (277)
T ss_pred             HcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEccCCCcE
Confidence            3888899999999998874 333     5678899976532    22346678865544 59999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCC-cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          478 LSLERCT-CSLDDLIQTYSDSS-CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~-~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      ++|||+. |+|.+++...+... ....+++..+..++.|+   |+|||+++++|||||    |++.+|
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~  153 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKG  153 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccC
Confidence            9999997 59999998744211 11357888889999999   899999999999999    676655

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.42  E-value=6.8e-14  Score=139.45  Aligned_cols=134  Identities=19%  Similarity=0.127  Sum_probs=104.9

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .+.|++.+.||+|+||.||+.....+..+|+|.+...  ..+.+.+|+..+.. ++|+||+++++++.. ...|++|||+
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~-~~~~~v~e~~   82 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKT-LQHDKLVKLHAVVTK-EPIYIITEFM   82 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHh-cCCCCcceEEEEEcC-CCeEEEEEeC
Confidence            3448999999999999988865556677999977642  23456788866555 599999999999887 7789999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      + |+|.+++....    ...++...+..++.|+   |.|||+.+++|||||    +++.++.++...+.+
T Consensus        83 ~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~  148 (260)
T cd05073          83 AKGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGL  148 (260)
T ss_pred             CCCcHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcc
Confidence            7 69999997632    3346777788888888   889999999999999    777777666555443

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.42  E-value=7.4e-14  Score=140.15  Aligned_cols=130  Identities=20%  Similarity=0.154  Sum_probs=97.2

Q ss_pred             cccccCCceEEEeeeecCc---hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          414 EIAKGSNGTVVYEGIYEGR---PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       414 ~LG~G~fG~V~~~~~~~g~---~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      +||+|+||.||+....++.   .+++|.+...    ....+.+|+..+ +.++||||+++++++......|++||||. |
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~-~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPY-RILQHPNILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHH-hccCCcchhheEEEecCCCccEEEEecCCCC
Confidence            6999999998875433333   3445544422    233566777444 45599999999999999999999999998 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|.+++.....  ....+++..+..++.|+   |+|||+++++|||||    |++.+|..+...+++.
T Consensus        81 ~L~~~l~~~~~--~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~  146 (268)
T cd05086          81 DLKSYLSQEQW--HRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIG  146 (268)
T ss_pred             cHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccc
Confidence            99999976321  12345666777888888   899999999999999    8888888777776653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.42  E-value=6.6e-14  Score=138.91  Aligned_cols=131  Identities=25%  Similarity=0.317  Sum_probs=104.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      |++.+.||+|+||.||. +..+++.||+|.+... ..+.+.+|+..+.. ++||||+++++++..+ ..+++|||+. |+
T Consensus         8 ~~~~~~lg~g~~g~v~~-~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~   84 (254)
T cd05083           8 LTLGEIIGEGEFGAVLQ-GEYTGQKVAVKNIKCDVTAQAFLEETAVMTK-LHHKNLVRLLGVILHN-GLYIVMELMSKGN   84 (254)
T ss_pred             ceeeeeeccCCCCceEe-cccCCCceEEEeecCcchHHHHHHHHHHHHh-CCCCCcCeEEEEEcCC-CcEEEEECCCCCC
Confidence            88899999999998765 4568889999987643 23356778866544 5999999999998765 4799999998 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++....    ...+++..+..++.|+   |.|||+++++|||||    |++.+|.+....+.++
T Consensus        85 L~~~l~~~~----~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~  147 (254)
T cd05083          85 LVNFLRTRG----RALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLA  147 (254)
T ss_pred             HHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccc
Confidence            999997632    2357888888888888   889999999999999    7888888777666544

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.42  E-value=5.6e-14  Score=145.61  Aligned_cols=124  Identities=21%  Similarity=0.183  Sum_probs=98.3

Q ss_pred             cccccc--CCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          413 TEIAKG--SNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G--~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ..||+|  +||+||. .+..+|+.||+|++...     ..+.+.+|+. +.+.++||||+++++++...+..+++|||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~-~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVV-LSHFFRHPNIMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHH-HHHhCCCCCcceEeeeEecCCceEEEEeccc
Confidence            467777  8888887 46678999999987642     1234556764 4555699999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                       |+|.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..+..
T Consensus        83 ~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~  143 (328)
T cd08226          83 YGSANSLLKTYF----PEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLS  143 (328)
T ss_pred             CCCHHHHHHhhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEe
Confidence             59999988732    2358888888999998   899999999999999    77777655443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.42  E-value=6.3e-14  Score=138.55  Aligned_cols=133  Identities=24%  Similarity=0.331  Sum_probs=109.5

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|+..+.||+|+||.||.. ...+++.+|+|.+.... .+.+.+|+..+.++ +||||+++++++......|+++||+. 
T Consensus         4 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~l~~e~~~~   82 (256)
T cd06612           4 VFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQC-DSPYIVKYYGSYFKNTDLWIVMEYCGA   82 (256)
T ss_pred             cchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhC-CCCcEeeeeeeeecCCcEEEEEecCCC
Confidence            4888999999999998874 44558899999776442 45677888766555 99999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++|.+++...     ...+++..+..++.|+   |.|||+.+++||||+    +++.+|.+....+.+.
T Consensus        83 ~~L~~~l~~~-----~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~  146 (256)
T cd06612          83 GSVSDIMKIT-----NKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVS  146 (256)
T ss_pred             CcHHHHHHhC-----ccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccc
Confidence            4999998752     3468889999999998   889999999999999    7788887776655543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=6.2e-15  Score=152.77  Aligned_cols=132  Identities=24%  Similarity=0.268  Sum_probs=109.4

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      ..|...++||+|+||.||+ .+..+++.||+|++..+.    .+...+|+..| +.++++||.++|+.+.....++++||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~L-s~~~~~~it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVL-SQCDSPNITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHH-HhcCcchHHhhhhheeecccHHHHHH
Confidence            3477779999999999888 478899999999988653    23566788555 44599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||. |++.++++.      ...+.+..+..+++++   |.|||..+.+|||||    |+..+|..+..++..
T Consensus        92 y~~gGsv~~lL~~------~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgV  157 (467)
T KOG0201|consen   92 YCGGGSVLDLLKS------GNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGV  157 (467)
T ss_pred             HhcCcchhhhhcc------CCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecce
Confidence            998 599999987      4445888888888887   889999999999999    777778777766553

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.42  E-value=7.4e-14  Score=137.78  Aligned_cols=134  Identities=26%  Similarity=0.235  Sum_probs=106.0

Q ss_pred             ccccccCCceEEEe-eeec---CchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          413 TEIAKGSNGTVVYE-GIYE---GRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~---g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.||+|+||.||.+ ....   +..||+|.+....    ...+.+|+..+..+ +|+||+++++++......+++|||++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL-GHPNVVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhc-CCCChheeeeeecCCCceEEEEEecc
Confidence            47999999998874 3333   7889999887542    34566788666555 79999999999999999999999996


Q ss_pred             -cchhhhhhhcccC---CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDS---SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~---~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++......   .....+++..+..++.|+   |+|||+++++|||||    +++.+|.+.+..+.+.+
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~  153 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSR  153 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEccccccc
Confidence             6999999873100   002568999999999998   889999999999999    88888887777665543

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=8.3e-14  Score=139.82  Aligned_cols=131  Identities=21%  Similarity=0.168  Sum_probs=112.3

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHHh------hhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALH------DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~------~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.+.++||+|+|++|+. +.+.+.+.+|+|+++++..      +-.+.|-....+..+||.+|-|+.||+.+..+++|.|
T Consensus       252 f~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvie  331 (593)
T KOG0695|consen  252 FDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIE  331 (593)
T ss_pred             ceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEE
Confidence            99999999999999887 5778899999999998632      1234455455566699999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |++ |+|.-.+++      +..++++.++.+...|   |.|||++|||.||||    |+|..||.++...++
T Consensus       332 yv~ggdlmfhmqr------qrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygm  397 (593)
T KOG0695|consen  332 YVNGGDLMFHMQR------QRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGM  397 (593)
T ss_pred             EecCcceeeehhh------hhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccch
Confidence            998 599888887      5679999999999998   789999999999999    899999988776554

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.42  E-value=5.6e-14  Score=145.80  Aligned_cols=133  Identities=23%  Similarity=0.276  Sum_probs=107.6

Q ss_pred             eeecccccccCCceEEEe-eeec--CchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYE--GRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFV  476 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~--g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~  476 (549)
                      |.+.+.||+|+||.||.. ...+  +..||+|++...     ..+...+|+..+.++.+||||+++++++..    ...+
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            788899999999998874 4445  788999987642     133466788777776579999999987532    2458


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+++|++.++|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+.+..+++.+
T Consensus        82 ~~~~e~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          82 YLYEELMEADLHQIIRS------GQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             EEEEecccCCHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence            89999999999999876      4568899999999999   899999999999999    88889888877776654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.42  E-value=7.6e-14  Score=140.61  Aligned_cols=132  Identities=22%  Similarity=0.244  Sum_probs=103.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCc----hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|+..+.||+|+||.||+. ...+++    .||+|.+...    ....+.+|+..+. .++||||+++++++.. ...++
T Consensus         8 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~-~~~~~~i~~~~~~~~~-~~~~l   85 (279)
T cd05109           8 ELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMA-GVGSPYVCRLLGICLT-STVQL   85 (279)
T ss_pred             heeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHH-hcCCCCCceEEEEEcC-CCcEE
Confidence            4888999999999998874 344554    4789977532    2334556775554 4599999999999875 45779


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|||++ |+|.++++..     ...+++..+..++.|+   |+|||+++|+|||||    |++.++.+++..+.++
T Consensus        86 ~~~~~~~g~l~~~l~~~-----~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~  156 (279)
T cd05109          86 VTQLMPYGCLLDYVREN-----KDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLA  156 (279)
T ss_pred             EEEcCCCCCHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCce
Confidence            999997 6999998762     2458889999999999   889999999999999    7788888777666554

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.42  E-value=7.7e-14  Score=140.54  Aligned_cols=127  Identities=23%  Similarity=0.168  Sum_probs=102.0

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||+||.+ ...+|+.||+|.+....      ...+.+|+..+.. ++||||+++++.+...+..|+||||++ ++
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEK-VSSRFIVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHh-CCCCCEeeeeeEEecCCeEEEEEecCCCCc
Confidence            689999998884 55678999999765421      2234568766544 489999999999999999999999998 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++....    ...+++..+..++.|+   |.|||+++++||||+    |++.+|.+....+.+.
T Consensus        80 L~~~l~~~~----~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~  142 (277)
T cd05577          80 LKYHIYNVG----EPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLA  142 (277)
T ss_pred             HHHHHHHcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcch
Confidence            999987632    2368888999998888   889999999999999    7888887777666544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.42  E-value=5.4e-14  Score=141.65  Aligned_cols=131  Identities=25%  Similarity=0.240  Sum_probs=106.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|+..+.||+|+||.||.. +..+++.||+|.+...    ....+.+|+..+.. ++||||+++++++.++...|+||||
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQ-CDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEECCEEEEEEec
Confidence            4778889999999998884 5667889999976532    23356678765544 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +. |+|.+++..       +.+++..+..++.|+   |+|||+++++|+||+    +++.+|.+.+..+.++
T Consensus        84 ~~~~~L~~~i~~-------~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~  148 (277)
T cd06640          84 LGGGSALDLLRA-------GPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVA  148 (277)
T ss_pred             CCCCcHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccc
Confidence            97 599998865       347888888888888   889999999999999    7888888777666654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.42  E-value=8.6e-14  Score=138.91  Aligned_cols=126  Identities=21%  Similarity=0.207  Sum_probs=98.7

Q ss_pred             cccccCCceEEEee---eecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          414 EIAKGSNGTVVYEG---IYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       414 ~LG~G~fG~V~~~~---~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      .||+|+||.||...   ..++..||+|.+....    .+.+.+|+..+.+ ++||||+++++++.. ...++||||++ |
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~-l~h~~ii~~~~~~~~-~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQ-LDNPYIVRMIGVCEA-EALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHh-cCCCCeEEEEEEEcC-CCeEEEEEeCCCC
Confidence            48999999987632   2345679999776432    2346688866555 599999999999864 56899999997 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +|.+++...     ...+++..++.++.|+   |.|||+++++|||||    |++.++.++...+.++
T Consensus        80 ~L~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~  142 (257)
T cd05115          80 PLNKFLSGK-----KDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLS  142 (257)
T ss_pred             CHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCcc
Confidence            999998752     3468899999999999   889999999999999    7788887777666554

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.42  E-value=6.9e-14  Score=141.58  Aligned_cols=138  Identities=21%  Similarity=0.134  Sum_probs=106.7

Q ss_pred             eeeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|+..+.||+|+||.||....      .++..||+|.+...    ....+.+|+..+ +.++||||+++++++......+
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l-~~l~h~~iv~~~~~~~~~~~~~   84 (288)
T cd05050           6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM-AEFDHPNIVKLLGVCAVGKPMC   84 (288)
T ss_pred             hceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHH-HhcCCCchheEEEEEcCCCccE
Confidence            388889999999999887422      25678999987643    223466788655 4459999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC----------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc
Q 042769          478 LSLERCT-CSLDDLIQTYSDS----------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK  533 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~----------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~  533 (549)
                      ++|||+. |+|.+++......                .....+++..+..++.|+   |.|||+++++|||||    |++
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~  164 (288)
T cd05050          85 LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVG  164 (288)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEec
Confidence            9999998 5999999753211                111246777888899988   899999999999999    778


Q ss_pred             cCCCCchhhhhhh
Q 042769          534 ADGHPSPLLLSLM  546 (549)
Q Consensus       534 ~~G~p~~~l~~Lm  546 (549)
                      .+|...+..+.+.
T Consensus       165 ~~~~~~l~dfg~~  177 (288)
T cd05050         165 ENMVVKIADFGLS  177 (288)
T ss_pred             CCCceEECccccc
Confidence            8887776666543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.41  E-value=6.1e-14  Score=138.43  Aligned_cols=133  Identities=21%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             eecccccccCCceEEEe-eeec----CchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          410 VSNTEIAKGSNGTVVYE-GIYE----GRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       410 ~~~~~LG~G~fG~V~~~-~~~~----g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ++.+.||.|+||.||.+ ....    +..||+|.+....    ...+..|+..+..+ +|+||+++++++...+..|++|
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKL-DHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhc-CCCchheEEEEEcCCCeeEEEE
Confidence            45678999999998874 3333    3889999887432    33566788766666 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+. ++|.+++....    ...+++..+..++.|+   |+|||+.+++|||||    +++.+|......+.+.+
T Consensus        81 e~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~  151 (258)
T smart00219       81 EYMEGGDLLDYLRKNR----PKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSR  151 (258)
T ss_pred             eccCCCCHHHHHHhhh----hccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCce
Confidence            9998 59999997622    1228899999999999   889999999999999    78888876666655543

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.41  E-value=8.6e-14  Score=138.04  Aligned_cols=131  Identities=20%  Similarity=0.253  Sum_probs=110.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|++|.||+. ...+++.||+|++...    ....+.+|+..+..+ +|+||+++++++......+++|||+
T Consensus         3 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           3 LERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSC-ESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             ceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhc-CCCCeeeEEEEEccCCeEEEEEEec
Confidence            788899999999998884 5567999999977654    234566788666555 8999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + ++|.+++..      ...+++..+..++.|+   |+|||+ ++++||||+    +++.+|.+.+..+.+.
T Consensus        82 ~~~~L~~~l~~------~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~  147 (264)
T cd06623          82 DGGSLADLLKK------VGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGIS  147 (264)
T ss_pred             CCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccc
Confidence            8 699999987      3568899999999998   889999 999999999    7888887776665544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.41  E-value=6.5e-14  Score=146.44  Aligned_cols=136  Identities=22%  Similarity=0.302  Sum_probs=108.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~----  473 (549)
                      .+.+.|.+.+.||+|+||.||.. ...+++.||+|++...     ......+|+..+.+ ++||||+++++++...    
T Consensus        14 ~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~-l~h~~iv~~~~~~~~~~~~~   92 (345)
T cd07877          14 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH-MKHENVIGLLDVFTPARSLE   92 (345)
T ss_pred             hccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHH-cCCCcccceeeeeeeccccc
Confidence            34456999999999999998874 5677999999987532     12345678865555 4999999999987543    


Q ss_pred             --ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          474 --DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       474 --~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                        ...|++++++.++|.++++.       ..+++..+..++.|+   |+|||+++|+|||||    +++.+|......+.
T Consensus        93 ~~~~~~lv~~~~~~~L~~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg  165 (345)
T cd07877          93 EFNDVYLVTHLMGADLNNIVKC-------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFG  165 (345)
T ss_pred             ccccEEEEehhcccCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccc
Confidence              34789999998899888764       358889999999998   889999999999999    78888888777766


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       166 ~~~  168 (345)
T cd07877         166 LAR  168 (345)
T ss_pred             ccc
Confidence            654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.41  E-value=4.3e-14  Score=140.39  Aligned_cols=131  Identities=23%  Similarity=0.371  Sum_probs=107.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+..+.||+|+||.||.. ...+++.||+|.+...     ....+..|+..+..+ +|+||+++++++...+..++++||
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL-KHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhC-CCCChhheeeeEecCCEEEEEEec
Confidence            788899999999998774 4557889999976633     234566788665555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +. ++|.+++..      ...+++..+..++.|+   |+|||+++++||||+    +++.+|.+....+.++
T Consensus        81 ~~~~~L~~~~~~------~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~  146 (264)
T cd06626          81 CSGGTLEELLEH------GRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCA  146 (264)
T ss_pred             CCCCcHHHHHhh------cCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccc
Confidence            98 599999876      3457888888998888   899999999999999    7888887776665544

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PTZ00284 protein kinase; Provisional

Probab=99.41  E-value=7.8e-14  Score=152.05  Aligned_cols=126  Identities=15%  Similarity=0.140  Sum_probs=97.2

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHh-----cCCCCCeeEEeeeccCc-ceE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIA-----SDQHPNIVRWYGVENDK-DFV  476 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~-----~l~HpNIVrl~g~~~~~-~~~  476 (549)
                      .+.|++.++||+|+||+||++ +..+++.||||+++..  .......|++.+..     ...|++|+++++++... .+.
T Consensus       128 ~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~  207 (467)
T PTZ00284        128 TQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHM  207 (467)
T ss_pred             CCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceE
Confidence            345999999999999999884 6677899999987531  22233445544322     23456799999888754 578


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCC
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGH  537 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~  537 (549)
                      |+|||++.++|.+++.+      .+.+++..+..++.|+   |+|||. .+|||||||    |++.+|.
T Consensus       208 ~iv~~~~g~~l~~~l~~------~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~  270 (467)
T PTZ00284        208 CIVMPKYGPCLLDWIMK------HGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDT  270 (467)
T ss_pred             EEEEeccCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCc
Confidence            99999998899999877      4568999999999999   899997 699999999    7776653

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.41  E-value=1.3e-13  Score=138.20  Aligned_cols=119  Identities=15%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             ccccccCCceEEEeeee-------------cCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          413 TEIAKGSNGTVVYEGIY-------------EGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~-------------~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.||+|+||.||..-..             ....+|+|.+....   ...+.+|+. +++.++||||+++++++..+...
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~-~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETAS-MMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHH-HHHhCCCCCEeeEEEEEecCCCC
Confidence            36899999998763211             12357888766432   223445654 44556999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +++|||++ |+|..++...     ...+++.++..++.|+   |+|||+++|+|||||    |++.+|.
T Consensus        80 ~lv~e~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~  143 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRK-----SDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGI  143 (262)
T ss_pred             EEEEecccCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCc
Confidence            99999998 5888887651     3458889999999999   899999999999999    7766553

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.41  E-value=3.8e-14  Score=142.79  Aligned_cols=133  Identities=23%  Similarity=0.289  Sum_probs=108.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||.|++|.||+. ...+|+.||+|++....     ...+.+|+..+..+ +||||+++++++...+..|++|||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKEL-NHPNIVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhc-CCCCccCHhheeccCCeEEEEEec
Confidence            566789999999998874 56689999999876431     23456788665554 999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++++|.+++....    ...+++..+..++.|+   |+|||+++++||||+    +++.+|.+.+..+.+.
T Consensus        80 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~  146 (283)
T cd07835          80 LDLDLKKYMDSSP----LTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLA  146 (283)
T ss_pred             cCcCHHHHHhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccc
Confidence            9889999987622    2368899999999998   899999999999999    7888887776665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.41  E-value=1.1e-13  Score=137.63  Aligned_cols=133  Identities=26%  Similarity=0.313  Sum_probs=104.8

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeec-cCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVE-NDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~-~~~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||.||+. ...|+.+|+|.+... ..+.+.+|+..+.. ++|+||+++++++ ......|++|||++ |
T Consensus         8 ~~~~~~lg~g~~~~v~~~-~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~   85 (256)
T cd05082           8 LKLLQTIGKGEFGDVMLG-DYRGNKVAVKCIKNDATAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   85 (256)
T ss_pred             CeeeeeecccCCCeEEEE-EEcCCcEEEEEeCCCchHHHHHHHHHHHHh-CCCCCeeeEEEEEEcCCCceEEEEECCCCC
Confidence            888899999999987663 456888999977643 23356678865554 5999999999975 45567899999997 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|.++++...    ...+++..+..++.|+   |+|||+++++|||||    +++.+|.++...+.+.+
T Consensus        86 ~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~  150 (256)
T cd05082          86 SLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTK  150 (256)
T ss_pred             cHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccce
Confidence            9999987622    2347788888999888   899999999999999    78888887776665543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.41  E-value=2.2e-14  Score=146.31  Aligned_cols=131  Identities=24%  Similarity=0.302  Sum_probs=106.3

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|.....||+|+||.||.. +..++..||||.+...   ..+.+.+|+..+.. ++||||+++++.+...+..|++|||+
T Consensus        23 ~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          23 YLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRD-YHHENVVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             HHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHh-CCCCcHHHHHHheecCCeEEEEEeCC
Confidence            3555678999999998874 5567889999976532   23356688866554 59999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +| +|.+++..       +.+++..+..++.|+   |.|||+++|+|||||    +++.+|.+.+..+.+.
T Consensus       102 ~~~~L~~~~~~-------~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~  165 (292)
T cd06658         102 EGGALTDIVTH-------TRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFC  165 (292)
T ss_pred             CCCcHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcch
Confidence            85 88888754       357888999999998   889999999999999    7888888877766654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.41  E-value=6.1e-14  Score=140.88  Aligned_cols=133  Identities=27%  Similarity=0.329  Sum_probs=109.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVm  480 (549)
                      |++.+.||.|+||.||+. ...+++.+|+|++....     .....+|+..+..+ +||||+++++++...  +..++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL-RHPNIVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhc-cCCCeeeheeeEecCCCCcEEEEe
Confidence            567789999999998884 55568999999887542     23456788665554 899999999999888  8899999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||++++|.+++...     ...+++..++.++.|+   |+|||+.+++|+|||    |++.+|.+.+..+++++
T Consensus        80 e~~~~~l~~~~~~~-----~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~  148 (287)
T cd07840          80 EYMDHDLTGLLDSP-----EVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLAR  148 (287)
T ss_pred             ccccccHHHHHhcc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEcccccee
Confidence            99999999988762     2468899999999998   899999999999999    88999988777666544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.41  E-value=3e-14  Score=145.63  Aligned_cols=132  Identities=25%  Similarity=0.290  Sum_probs=107.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|.....||+|+||.||.. +..+++.||+|.+...   ..+.+.+|+..+.. ++||||+++++++...+..|++|||+
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD-YQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHh-CCCCchhhhhhheeeCCeEEEEEecC
Confidence            3556678999999998874 5667899999987532   23356678865554 49999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      + ++|.+++..       ..+++..++.++.|+   |.|||+++++|||||    |++.+|.+++..+.+++
T Consensus       101 ~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~  165 (297)
T cd06659         101 QGGALTDIVSQ-------TRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCA  165 (297)
T ss_pred             CCCCHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHh
Confidence            8 588887654       357888999999998   889999999999999    88999988888777654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.41  E-value=6.1e-14  Score=140.83  Aligned_cols=133  Identities=24%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             eeeecccccccCCceEEEee-----eecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-----IYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-----~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~  476 (549)
                      .|++.+.||+|+||.||...     ..+++.+|||.+....    ...+.+|+..+.. ++||||+++++++..  ....
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~-l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRT-LDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHh-CCCCChheEEeeeecCCCCce
Confidence            37778899999999987742     2347889999887432    3456788866655 499999999999877  5579


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +++|||++ ++|.+++....     ..+++..+..++.|+   |+|||+++++|||||    |++.++.+.+..+.+.
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  156 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHR-----DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLA  156 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCc-----cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccc
Confidence            99999997 59999997622     358888899999998   899999999999999    7888887777666544

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.41  E-value=2.2e-13  Score=136.01  Aligned_cols=123  Identities=22%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             ccccccCCceEEEe-eee------cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          413 TEIAKGSNGTVVYE-GIY------EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~------~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.||+|+||.||.. ...      .++.+|+|.+...    ....+.+|+..+. .++||||+++++++...+..+++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~-~l~h~~i~~~~~~~~~~~~~~~v~e   79 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMS-NFNHPNIVKLLGVCLLNEPQYIIME   79 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHH-hcCCCCeeeEeeeecCCCCeEEEEe
Confidence            36999999998763 221      2368999988643    2335667886554 4599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCC-cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          482 RCT-CSLDDLIQTYSDSS-CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~-~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      |++ |+|.+++....... ....+++..+..++.|+   |+|||+++++|||||    |++.++
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~  143 (269)
T cd05044          80 LMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKG  143 (269)
T ss_pred             ccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCC
Confidence            997 59999997643211 22347778888898888   889999999999999    677666

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.41  E-value=5.6e-14  Score=139.85  Aligned_cols=132  Identities=20%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |+..+.||.|+||.||.. ...+++.+|+|++...    ....+.+|+..+..+ +||||+++++++......++++||+
T Consensus         3 ~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           3 LEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKC-NSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             chHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHC-CCCchhhhheeeecCCEEEEEEEec
Confidence            778889999999998884 5567899999977643    233567888666555 7999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      . ++|.+++....     ..+++..+..++.|+   |.|||+ .+++|||||    +++.+|......+.++
T Consensus        82 ~~~~L~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~  148 (265)
T cd06605          82 DGGSLDKILKEVQ-----GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVS  148 (265)
T ss_pred             CCCcHHHHHHHcc-----CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence            8 59999998721     568888889999998   889999 999999999    7888887766655543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.41  E-value=1.4e-13  Score=159.12  Aligned_cols=123  Identities=18%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             cceeeeeecccccccCCceEEE-eeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cce
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDF  475 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~  475 (549)
                      .+.+ |++.+.||+|+||+||+ ....+++.+|+|.+..     .....+..|+..|.. ++|||||+++++|..  ...
T Consensus        11 ~l~~-YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~-L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266         11 RLNE-YEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRE-LKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccCC-EEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHH-cCCCCcCeEEEEEEecCCCE
Confidence            3444 99999999999999988 4667788999987653     223456789866555 599999999998754  457


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-------eEEEeecc
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-------KVIIRDLS  530 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-------~IIHRDLK  530 (549)
                      +|||||||. |+|.++|..+..  ....+++..++.++.||   |.|||..       +|||||||
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~--~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLK  152 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYK--MFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLK  152 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCc
Confidence            999999998 599999976321  13468999999999999   8999984       49999999

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.40  E-value=1.3e-13  Score=136.25  Aligned_cols=128  Identities=24%  Similarity=0.254  Sum_probs=102.3

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cch
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSL  487 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL  487 (549)
                      ++||+|+||.||......++.||+|++...    ....+.+|+..+. .++||||+++++++......+++|||+. ++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~-~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILK-QYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHH-hCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            479999999988754444899999987643    2335667886554 4599999999999999999999999997 599


Q ss_pred             hhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          488 DDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       488 ~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.++..++..+.+.
T Consensus        80 ~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~  140 (251)
T cd05041          80 LTFLRKK-----KNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMS  140 (251)
T ss_pred             HHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeecccc
Confidence            9998762     2356777888888887   889999999999999    8888887777666544

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.40  E-value=7.7e-14  Score=140.90  Aligned_cols=139  Identities=22%  Similarity=0.204  Sum_probs=108.0

Q ss_pred             eeeecccccccCCceEEEee------eecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|...++||+|+||.||...      ..++..+|+|.+...   ....+.+|++.+.. ++|+||+++++++......++
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTV-LQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhc-CCCCCCceEEEEEecCCceEE
Confidence            37778999999999988742      224567888876532   23457788865554 499999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC---------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          479 SLERCT-CSLDDLIQTYSDS---------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~---------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      +|||+. |+|.+++..+...         .....+++..+..++.|+   |+|||+++++|||||    |++.++.+...
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~  164 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIG  164 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEEC
Confidence            999997 6999999864311         011347888889999998   889999999999999    78888888777


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+++.+
T Consensus       165 dfg~~~  170 (280)
T cd05092         165 DFGMSR  170 (280)
T ss_pred             CCCcee
Confidence            766654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.40  E-value=9.5e-14  Score=139.64  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=98.8

Q ss_pred             eeeccc--ccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          409 FVSNTE--IAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       409 y~~~~~--LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      |++.+.  ||+|+||.||.. ...+++.+|+|.+........  |+.......+||||+++++++...+..|+||||++ 
T Consensus        16 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~--e~~~~~~~~~h~~iv~~~~~~~~~~~~~iv~e~~~~   93 (267)
T PHA03390         16 CEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI--EPMVHQLMKDNPNFIKLYYSVTTLKGHVLIMDYIKD   93 (267)
T ss_pred             hccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh--hHHHHHHhhcCCCEEEEEEEEecCCeeEEEEEcCCC
Confidence            555444  599999999884 667789999998775432222  22222222379999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLS  544 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~  544 (549)
                      |+|.+++..      ...+++..+..++.|+   |.|||+.+++|||||    +++.++ ......+.
T Consensus        94 ~~L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg  155 (267)
T PHA03390         94 GDLFDLLKK------EGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYG  155 (267)
T ss_pred             CcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCc
Confidence            599999977      3478999999999999   889999999999999    777776 54444433

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.40  E-value=1.3e-13  Score=139.75  Aligned_cols=138  Identities=23%  Similarity=0.331  Sum_probs=107.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----ceEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----DFVYL  478 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----~~~yL  478 (549)
                      +.|.+.+.||+|+||.||.. ...+++.+|+|.+...  ......+|+..+.++.+||||+++++++...     ...|+
T Consensus        22 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~l  101 (291)
T cd06639          22 DTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWL  101 (291)
T ss_pred             CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEE
Confidence            34999999999999998874 5567899999987642  2234567887776666899999999998643     35899


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||||++ |+|.++++...  .....+++..++.++.|+   |+|||+++++|||||    +++.+|.+.+..+.+.
T Consensus       102 v~ey~~~~sL~~~~~~~~--~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~  175 (291)
T cd06639         102 VLELCNGGSVTELVKGLL--ICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVS  175 (291)
T ss_pred             EEEECCCCcHHHHHHHhh--hcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccc
Confidence            999997 59999886421  113468888999999998   889999999999999    7788887766655543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.40  E-value=1.1e-13  Score=138.52  Aligned_cols=129  Identities=19%  Similarity=0.232  Sum_probs=100.9

Q ss_pred             cccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          412 NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ...||+|+||.||.. ...+++.||+|.+...   ..+.+.+|+..+ +.++|+||+++++++...+..++++||+. ++
T Consensus        13 ~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   91 (268)
T cd06624          13 RVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALH-SYLKHRNIVQYLGSDSENGFFKIFMEQVPGGS   91 (268)
T ss_pred             eEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHH-HhcCCCCeeeeeeeeccCCEEEEEEecCCCCC
Confidence            358999999998774 4567888999976642   233566888655 44599999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCccccc--CchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVF--GEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l--~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~~~l~~Lm  546 (549)
                      |.+++....     ..+  ++..+..++.|+   |.|||+++|+|||||    +++. ++.+.+..+.++
T Consensus        92 L~~~l~~~~-----~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~  156 (268)
T cd06624          92 LSALLRSKW-----GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTS  156 (268)
T ss_pred             HHHHHHHhc-----ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhh
Confidence            999997621     234  677778888888   889999999999999    6655 566666665554

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=99.40  E-value=2.6e-13  Score=154.39  Aligned_cols=148  Identities=17%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             CceeccCCCccc------cccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhhhh--------
Q 042769            1 VSWTFGTGTPIY------SSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVK--------   65 (549)
Q Consensus         1 ~~W~f~tg~~i~------ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~--------   65 (549)
                      +.|+|+||+...      ..+|+          .|.+..+.+|.|+.++.|||+|+ +|+++|.|+....+.        
T Consensus       166 ~aWt~~tGd~~~~~~~~~~~~e~----------TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~c  235 (764)
T TIGR03074       166 VAWTYHTGDLKTPDDPGEATFQA----------TPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTC  235 (764)
T ss_pred             EEEEEECCCcccccccccccccc----------CCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence            469999997542      12222          28888889999999999999999 999999999865432        


Q ss_pred             ------------------cCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHH
Q 042769           66 ------------------TAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQ  127 (549)
Q Consensus        66 ------------------~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (549)
                                        ++|.+. ++.||+|+-|+.+|||||+||+++|+|...+.-+  +..            +..+
T Consensus       236 RGvay~~~p~~~~~~~~~~~p~~~-~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vd--l~~------------~~g~  300 (764)
T TIGR03074       236 RGVSYYDAPAAAAGPAAPAAPADC-ARRIILPTSDARLIALDADTGKLCEDFGNNGTVD--LTA------------GMGT  300 (764)
T ss_pred             cceEEecCCccccccccccccccc-CCEEEEecCCCeEEEEECCCCCEEEEecCCCcee--eec------------ccCc
Confidence                              346666 7899999999999999999999999998754110  000            0000


Q ss_pred             HHh--hccCccccccccCceEEEEEcc----------cceeecccCCCCCceeeeeeehhh
Q 042769          128 LVK--SGLTNTAELQHKEPYLLFITRT----------DYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       128 ~~~--~~~~~~~~~~~~~~~~v~i~r~----------d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      .-.  -..++++.+.   .++||||..          ++.|+|+|++||+++|++..+.-.
T Consensus       301 ~~~g~~~~ts~P~V~---~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~  358 (764)
T TIGR03074       301 TPPGYYYPTSPPLVA---GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPD  358 (764)
T ss_pred             CCCcccccccCCEEE---CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCC
Confidence            000  0113344432   379999964          689999999999999999987433

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.40  E-value=7.6e-14  Score=140.07  Aligned_cols=132  Identities=24%  Similarity=0.232  Sum_probs=108.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +|++.+.||.|+||.||.. ...+++.||+|.+...    ....+.+|+..+.. ++||||+++++++......|+++||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQ-CRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHH-cCCCCeeeeeEEEEECCeEEEEEEe
Confidence            3788899999999998874 5567899999977643    22345678865544 4899999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +. ++|.+++..       ..+++..+..++.|+   |.|||+++++||||+    +++.+|.+....+.+.+
T Consensus        81 ~~~~~L~~~~~~-------~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~  146 (274)
T cd06609          81 CGGGSCLDLLKP-------GKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSG  146 (274)
T ss_pred             eCCCcHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccce
Confidence            97 599999876       268889999999998   889999999999999    88888887777665543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.40  E-value=8.2e-14  Score=141.01  Aligned_cols=133  Identities=22%  Similarity=0.195  Sum_probs=107.0

Q ss_pred             eeecccccccCCceEEEee----eecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG----IYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~----~~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      |++.+.||+|+||.||+..    ..+++.||||.+.+.       ......+|+..+.+..+||||+++++++......|
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            7788899999999988732    245788999876532       12345678877777657999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||||+. |+|.+++..      ...+++..++.++.|+   |.|||+.+++|||||    |++.+|.+....+.+.+
T Consensus        82 lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~  153 (288)
T cd05583          82 LILDYVNGGELFTHLYQ------REHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSK  153 (288)
T ss_pred             EEEecCCCCcHHHHHhh------cCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccc
Confidence            9999997 599999876      4468888888888888   899999999999999    78888877766665544

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.40  E-value=1.4e-13  Score=136.86  Aligned_cols=134  Identities=23%  Similarity=0.216  Sum_probs=107.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||.|+||+||.. ...++..+|+|++...    ....+.+|+..+. .++|+||+++++.+...+..|++||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~-~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMS-QCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHH-hcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            3888999999999998874 3457888999977532    2345667886554 45999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++ ++|.++++...   ....+++..+..++.|+   |.|||+++++|||||    ++++++...+..+.+
T Consensus        81 ~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~  148 (267)
T cd06610          81 LSGGSLLDIMKSSY---PRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGV  148 (267)
T ss_pred             cCCCcHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccch
Confidence            97 59999997632   12458888999999998   889999999999999    778887766655544

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.40  E-value=2.9e-14  Score=154.25  Aligned_cols=133  Identities=26%  Similarity=0.333  Sum_probs=108.8

Q ss_pred             eeecccccccCCceEEEeeeec---C--chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYE---G--RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~---g--~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ..+.++||+|+||. ++++.++   |  -.||||+++..    ....+++|+..|.++ +|||+|||||+..+ ..+.||
T Consensus       112 i~l~e~LG~GsFgv-V~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L-~H~hliRLyGvVl~-qp~mMV  188 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGV-VKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKL-QHPHLIRLYGVVLD-QPAMMV  188 (1039)
T ss_pred             HHHHHHhcCcceee-EeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhc-cCcceeEEeeeecc-chhhHH
Confidence            56678999999995 6655544   3  36899988743    355789999777666 99999999999987 677899


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||+|+ |+|.+.|++..    ...|.......|+.||   |+||..+++|||||-    |+-.--..++.+++|||-
T Consensus       189 ~ELaplGSLldrLrka~----~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRa  261 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKAK----KAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRA  261 (1039)
T ss_pred             hhhcccchHHHHHhhcc----ccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceec
Confidence            99998 79999998832    5567778888999999   999999999999998    666666677779999984

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.39  E-value=1.4e-13  Score=139.09  Aligned_cols=138  Identities=22%  Similarity=0.283  Sum_probs=107.4

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |+..+.||+|+||.||. ....+++.+|+|.+...    ....+.+|+..+.+..+||||+++++++......+++|||+
T Consensus         6 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~   85 (288)
T cd06616           6 LKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELM   85 (288)
T ss_pred             hHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecc
Confidence            56678999999999887 46677899999987653    23356678877777756999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .++|.++...... .....+++..+..++.|+   |+|||+ .+++|||||    |++.+|.+++..+.+.+
T Consensus        86 ~~~l~~l~~~~~~-~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  156 (288)
T cd06616          86 DISLDKFYKYVYE-VLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISG  156 (288)
T ss_pred             cCCHHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhH
Confidence            8766554332100 113568888999999988   889997 599999999    88888888877776654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.39  E-value=1.6e-13  Score=138.08  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=107.7

Q ss_pred             eeeeecccccccCCceEEEeeeec-----CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYE-----GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~-----g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~  476 (549)
                      +.|++.+.||+|+||.||+.....     +..||+|++...    ....+.+|+..+..+ +||||+++++++.. ....
T Consensus         6 ~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           6 DRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGL-SHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCCCC
Confidence            448899999999999988743222     678899877632    233466788665555 99999999998665 5678


Q ss_pred             EEEecccc-cchhhhhhhcccC--CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDS--SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~--~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++++||+. |+|.+++......  .....+++..+..++.|+   |+|||+++++|||||    |++.++.+++..+.+.
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~  164 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALS  164 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCc
Confidence            99999997 6999999764321  112458888999999998   899999999999999    7888888877766665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      |
T Consensus       165 ~  165 (280)
T cd05043         165 R  165 (280)
T ss_pred             c
Confidence            4

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.39  E-value=1.1e-13  Score=141.14  Aligned_cols=131  Identities=26%  Similarity=0.346  Sum_probs=105.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|.+.+.||+|+||.||.. ...+++.||+|.+...   ..+.+.+|+..+.. ++||||+++++++...+..|+|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~-l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRE-NKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhh-cCCCCeeehhheeeeCCcEEEEEec
Confidence            34889999999999998774 5567889999977532   23356678865544 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++ ++|.+++.+       ..+++..+..++.|+   |.|||+++++|||||    +++.+|.+....+.+
T Consensus        98 ~~~~~L~~~~~~-------~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~  161 (293)
T cd06647          98 LAGGSLTDVVTE-------TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF  161 (293)
T ss_pred             CCCCcHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcc
Confidence            97 599999865       347788888888888   889999999999999    777777766665543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.39  E-value=1.4e-13  Score=138.78  Aligned_cols=138  Identities=22%  Similarity=0.229  Sum_probs=105.6

Q ss_pred             eeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |.+.+.||+|+||.||....      ..++.||+|++...    ....+.+|+. +...++||||+++++++......++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~-~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAM-MRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHH-HHhcCCCCCcCeEEEEEcCCCceEE
Confidence            77789999999999887422      23578999988743    1234556774 4455699999999999999999999


Q ss_pred             Eecccc-cchhhhhhhccc----------CCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          479 SLERCT-CSLDDLIQTYSD----------SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~----------~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      ++||+. ++|.+++.....          ......+++..+..++.|+   |+|||+++|+|||||    |++.++..+.
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl  165 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKI  165 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEe
Confidence            999997 599999853210          0112347777888889998   899999999999999    7888888877


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+++.|
T Consensus       166 ~Dfg~~~  172 (283)
T cd05091         166 SDLGLFR  172 (283)
T ss_pred             ccccccc
Confidence            7776654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.39  E-value=1.2e-13  Score=137.62  Aligned_cols=125  Identities=24%  Similarity=0.320  Sum_probs=101.8

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||.|+||.||.. ...+++.+|+|.+.+.      ..+.+.+|+..+.. ++||||+++++.+.+....|++|||+. ++
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEE-CNHPFIVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHh-CCCCCEeeeeeeEEcCCccEEEEecCCCCc
Confidence            799999998874 5556899999977643      22356678865544 499999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++.+      ...+++..+..++.|+   |.|||+++++|+||+    +++.+|.+.+..+.+.
T Consensus        80 L~~~l~~------~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~  140 (262)
T cd05572          80 LWTILRD------RGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFA  140 (262)
T ss_pred             HHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcc
Confidence            9999977      3458888888898888   889999999999999    7888887776665543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.39  E-value=7.7e-14  Score=165.01  Aligned_cols=121  Identities=22%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      +...++||+|+||.||+. ...+++.||||++.... .....|++.+.+ ++|||||+++++|...+..|+|||||+ |+
T Consensus       692 ~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~l~~-l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~  769 (968)
T PLN00113        692 LKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN-SIPSSEIADMGK-LQHPNIVKLIGLCRSEKGAYLIHEYIEGKN  769 (968)
T ss_pred             CCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc-cccHHHHHHHhh-CCCCCcceEEEEEEcCCCCEEEEeCCCCCc
Confidence            455678999999998874 45789999999886432 223456655544 499999999999999999999999997 69


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eeccc---ceeEEEeecc----ccccCCCCch
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD---SVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH---~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |.++++.         +++..+..++.|+   |+|||   +.+|+|||||    |++.++.+..
T Consensus       770 L~~~l~~---------l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~  824 (968)
T PLN00113        770 LSEVLRN---------LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL  824 (968)
T ss_pred             HHHHHhc---------CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEE
Confidence            9999864         6778888999988   89999   6799999999    7777776653

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.39  E-value=8.9e-14  Score=138.59  Aligned_cols=137  Identities=24%  Similarity=0.289  Sum_probs=108.2

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc------eEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD------FVY  477 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~------~~y  477 (549)
                      +.|++.+.||+|+||.||.. ...+++.+|+|++...  ..+.+.+|+..+.+..+|+||+++++++....      ..|
T Consensus         6 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~   85 (275)
T cd06608           6 GIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLW   85 (275)
T ss_pred             hheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEE
Confidence            34999999999999998874 5567889999977642  23456788877777668999999999986544      489


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|||+. ++|.+++....  .....+++..+..++.|+   |.|||+++++||||+    +++.+|.+....+.+
T Consensus        86 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          86 LVMELCGGGSVTDLVKGLR--KKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEcCCCCcHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCcc
Confidence            9999998 49999887522  113468889999999988   899999999999999    778888776655543

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.39  E-value=2.2e-13  Score=136.45  Aligned_cols=131  Identities=19%  Similarity=0.178  Sum_probs=101.6

Q ss_pred             eeecccccccCCceEEEeee-ec---CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYEGI-YE---GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~-~~---g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |.+.+.||+|+||.||.+.. ..   ...||+|.....    ..+.+.+|+..+..+ +||||+++++++.+ ...|++|
T Consensus         8 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~-~~~~lv~   85 (270)
T cd05056           8 ITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQF-DHPHIVKLIGVITE-NPVWIVM   85 (270)
T ss_pred             ceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhC-CCCchhceeEEEcC-CCcEEEE
Confidence            77889999999999887422 22   346888876632    234566788655544 99999999999875 4578999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||++ |+|.+++...     ...+++..+..++.|+   |+|||+++++|||||    |++.+|.+....+++.
T Consensus        86 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~  154 (270)
T cd05056          86 ELAPLGELRSYLQVN-----KYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLS  154 (270)
T ss_pred             EcCCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCcee
Confidence            9997 6999999762     2357888889999888   899999999999999    7888887766665544

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=3.9e-13  Score=142.69  Aligned_cols=137  Identities=16%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ++.|++.+.||+|+.+.||+.-..+.+.+|+|++...     ..+.+..|+..|.++.+|.+||+|+++...++++||||
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvm  439 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVM  439 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEe
Confidence            5669999999999999988866667788998877743     23356789988888889999999999999999999999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc---ccccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS---LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK---Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||-+.||.++|++..     ..++.-.++.+..|+   +.++|+.||||.|||   ++--.|.-++.+++.+.
T Consensus       440 E~Gd~DL~kiL~k~~-----~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVkG~LKLIDFGIA~  507 (677)
T KOG0596|consen  440 ECGDIDLNKILKKKK-----SIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVKGRLKLIDFGIAN  507 (677)
T ss_pred             ecccccHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEeeeEEeeeechhc
Confidence            999999999998833     222223666666666   779999999999999   66677777777766553

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.38  E-value=1.1e-13  Score=136.70  Aligned_cols=123  Identities=21%  Similarity=0.278  Sum_probs=100.1

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+..+.||+|+||.||. .+..+++.+|+|.+...     ....+.+|+..+.. ++||||+++++.+...+..++||||
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           2 YEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKL-LSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             ceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhh-CCCCchhheeeeEecCCEEEEEEec
Confidence            78889999999999887 46678899999976542     23356678866555 4999999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      ++| +|.+++....    ...+++..+..++.|+   |.|||+++++|||||    +++.++
T Consensus        81 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~  138 (256)
T cd08220          81 APGGTLAEYIQKRC----NSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHK  138 (256)
T ss_pred             CCCCCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC
Confidence            985 9999997632    3357888889998888   889999999999999    665444

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.38  E-value=7.9e-14  Score=142.09  Aligned_cols=134  Identities=23%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--------
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--------  473 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--------  473 (549)
                      .|.+.+.||+|+||.||.. ...+++.+|+|++....     .....+|++.+..+ +||||+++++++...        
T Consensus         9 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~   87 (311)
T cd07866           9 DYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKL-KHPNVVPLIDMAVERPDKSKRKR   87 (311)
T ss_pred             cEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhc-CCCCccchhhheecccccccccC
Confidence            3999999999999998874 56678999999775321     12456788766554 999999999886433        


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..+|++|||+.++|...+...     ...+++..+..++.|+   |.|||+++|+|||||    |++++|.+....+.+.
T Consensus        88 ~~~~lv~~~~~~~l~~~~~~~-----~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~  162 (311)
T cd07866          88 GSVYMVTPYMDHDLSGLLENP-----SVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLA  162 (311)
T ss_pred             ceEEEEEecCCcCHHHHHhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccc
Confidence            357999999998888887651     3468999999999999   889999999999999    8889998877766655


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       163 ~  163 (311)
T cd07866         163 R  163 (311)
T ss_pred             h
Confidence            4

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.38  E-value=2.4e-13  Score=135.20  Aligned_cols=127  Identities=22%  Similarity=0.239  Sum_probs=99.7

Q ss_pred             ccccccCCceEEEe-eeec---CchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          413 TEIAKGSNGTVVYE-GIYE---GRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~-~~~~---g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ++||+|+||.||++ ...+   +..+|+|.+....    .+.+.+|+..+.. +.||||+++++++.. ...+++|||+.
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQ-LDHPCIVRLIGVCKG-EPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHh-cCCCCeeeEEEEEcC-CceEEEEEeCC
Confidence            47999999998763 2222   3789999877432    2356678866655 499999999998864 46799999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++..      ...+++..+..++.|+   |+|||..+++|||||    |++.+|..+...+.+.+
T Consensus        79 ~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~  143 (257)
T cd05060          79 LGPLLKYLKK------RREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSR  143 (257)
T ss_pred             CCcHHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccc
Confidence             699999987      3468889999999998   889999999999999    78888877776665443

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.38  E-value=3.7e-13  Score=134.53  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=106.1

Q ss_pred             eeecccccccCCceEEEe-eee-cCchhHHHHHHHH-------------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIY-EGRPVAVKRLVRA-------------LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~-~g~~VAVK~i~~~-------------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      |++.+.||+|+||.||.. ... .++.+|+|.+...             ......+|+..+.+.++||||+++++++...
T Consensus         2 y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   81 (269)
T cd08528           2 YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLEN   81 (269)
T ss_pred             chhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccC
Confidence            778889999999998874 333 4688999976521             1223556776676677999999999999999


Q ss_pred             ceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhh
Q 042769          474 DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       474 ~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      +..+++|||+.| +|.+++....  .....+++..++.++.|+   |.|||+ .+++|||||    |++.+|.+....+.
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg  159 (269)
T cd08528          82 DRLYIVMDLIEGAPLGEHFNSLK--EKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFG  159 (269)
T ss_pred             CeEEEEEecCCCCcHHHHHHHHH--hccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEeccc
Confidence            999999999985 9988886422  123458888899999998   889995 789999999    78888877776665


Q ss_pred             hh
Q 042769          545 LM  546 (549)
Q Consensus       545 Lm  546 (549)
                      ++
T Consensus       160 ~~  161 (269)
T cd08528         160 LA  161 (269)
T ss_pred             ce
Confidence            44

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=1.5e-13  Score=135.24  Aligned_cols=131  Identities=26%  Similarity=0.319  Sum_probs=107.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|++|.||.. ...+++.||+|.+...     ..+.+.+|++.+.++ +|||++++++++......+++|||
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNL-KHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhC-CCCCccEEEEEEEeCCEEEEEEec
Confidence            778899999999998884 5567889999977643     233566788665555 999999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.+ +|.+++..      ...+++..+..++.|+   |.|||+++++|||||    +++.+|......+.++
T Consensus        81 ~~~~~L~~~~~~------~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~  146 (254)
T cd06627          81 AENGSLRQIIKK------FGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVA  146 (254)
T ss_pred             CCCCcHHHHHHh------ccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccc
Confidence            985 99999877      3568899999999998   889999999999999    7777777666655544

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.38  E-value=9.7e-14  Score=143.40  Aligned_cols=130  Identities=23%  Similarity=0.273  Sum_probs=108.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----eEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----FVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----~~y  477 (549)
                      |++.+.||.|+||.||+. ...+++.||+|++...     ..+.+.+|+..+..+ +||||+++++++....     ..|
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHL-RHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhc-CCcchhhhhhhhcccCcccccceE
Confidence            788899999999998884 5566899999977643     233566788666555 8999999999988775     789


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|||++++|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+.+..+.+
T Consensus        81 lv~e~~~~~l~~~l~~------~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~  149 (330)
T cd07834          81 IVTELMETDLHKVIKS------PQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGL  149 (330)
T ss_pred             EEecchhhhHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCc
Confidence            9999999999999876      4478899999999998   889999999999999    888888877765554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.38  E-value=1.9e-13  Score=138.17  Aligned_cols=135  Identities=26%  Similarity=0.310  Sum_probs=110.0

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      ..+.|+..+.||+|+||.||.. ...+++.+|+|.+....  ...+.+|++.+.. ++|+||+++++++......|+++|
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKD-CKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHH-CCCCCeeEEEEEEEECCEEEEEEe
Confidence            3444888899999999998773 44468899999776432  3456788865544 499999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |++ ++|.+++..+.     ..++...+..++.|+   |.|||+.+++|+||+    +++.+|.++...+.+
T Consensus        96 ~~~~~~L~~~l~~~~-----~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~  162 (286)
T cd06614          96 YMDGGSLTDIITQNF-----VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGF  162 (286)
T ss_pred             ccCCCcHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccch
Confidence            998 59999998721     268888999999998   899999999999999    788888877665544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.38  E-value=8.4e-14  Score=137.81  Aligned_cols=124  Identities=29%  Similarity=0.331  Sum_probs=101.3

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||.||.. ...+|+.+|+|.+...      ......+|+..+... +||||+++++++......|++|||+. ++
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~-~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQA-QSPYVVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhC-CCcchhHHHHheecCcEEEEEEecCCCCc
Confidence            689999998884 5556899999977643      233566777555444 89999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |.+++.+      ...+++..+..++.|+   |+|||+++++||||+    +++.+|......+++
T Consensus        80 L~~~l~~------~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~  139 (265)
T cd05579          80 LASLLEN------VGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGL  139 (265)
T ss_pred             HHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEeccc
Confidence            9999977      3468899999999999   889999999999999    788888776655544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.38  E-value=1.1e-13  Score=145.66  Aligned_cols=126  Identities=19%  Similarity=0.152  Sum_probs=90.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eee-cCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeE-EeeeccC
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIY-EGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVR-WYGVEND  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~-~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVr-l~g~~~~  472 (549)
                      .+...|.+.+.||+|+||+||++ ... +++.+|||++...        ....+.+|++.|..+ +|+||+. ++++   
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L-~h~~iv~~l~~~---   90 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTV-RGIGVVPQLLAT---   90 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhc-cCCCCCcEEEEc---
Confidence            34444999999999999998885 443 5777899875421        233567899766555 9999884 5543   


Q ss_pred             cceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeec-c----ccccCCCCchhhh
Q 042769          473 KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDL-S----LWKADGHPSPLLL  543 (549)
Q Consensus       473 ~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDL-K----Ll~~~G~p~~~l~  543 (549)
                       +..|||||||.| +|. .+..      ..   .   ..++.|+   |.|||+++|+|||| |    |++.+|.+.+.++
T Consensus        91 -~~~~LVmE~~~G~~L~-~~~~------~~---~---~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDF  156 (365)
T PRK09188         91 -GKDGLVRGWTEGVPLH-LARP------HG---D---PAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDF  156 (365)
T ss_pred             -CCcEEEEEccCCCCHH-HhCc------cc---h---HHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEEC
Confidence             357999999986 775 2211      11   1   2344444   89999999999999 8    7888888888877


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .|++
T Consensus       157 GlA~  160 (365)
T PRK09188        157 QLAS  160 (365)
T ss_pred             ccce
Confidence            7765

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.38  E-value=1.9e-13  Score=137.44  Aligned_cols=133  Identities=26%  Similarity=0.315  Sum_probs=104.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHh--cCCCCCeeEEeeeccCcce-----
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIA--SDQHPNIVRWYGVENDKDF-----  475 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~--~l~HpNIVrl~g~~~~~~~-----  475 (549)
                      |++.+.||+|+||.||+. ...+++.||+|++...     ......+|+..+..  .++||||+++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            567789999999998884 4556899999988632     12234466654433  3379999999999988776     


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      .+++|||++++|.+++....    ...+++..++.++.|+   |.|||+++++|+||+    |++.+|..++..+.+
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~----~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~  153 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCP----KPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGL  153 (287)
T ss_pred             eEEEehhcccCHHHHHHHcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCc
Confidence            99999999999999887632    2358889999999998   899999999999999    788888777665544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.37  E-value=4.3e-13  Score=148.18  Aligned_cols=133  Identities=14%  Similarity=0.199  Sum_probs=102.7

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhc
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKT   66 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~   66 (549)
                      +.|+|++|+.  +.|+              |.+.++.+|.++.++.|||+|+ +|++.|.|+...           .+.+
T Consensus        49 ~~W~~~~g~~~g~~st--------------Pvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r  114 (527)
T TIGR03075        49 PAWTFSLGKLRGQESQ--------------PLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR  114 (527)
T ss_pred             EEEEEECCCCCCcccC--------------CEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc
Confidence            4699999863  4555              8888888888888999999999 999999988742           2345


Q ss_pred             CCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceE
Q 042769           67 APHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYL  146 (549)
Q Consensus        67 sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (549)
                      +|++. +|.||+|+.++.++||||+||+++|++...+...                       ....++++.+.   .++
T Consensus       115 g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~-----------------------~~~~tssP~v~---~g~  167 (527)
T TIGR03075       115 GVALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA-----------------------GYTITAAPLVV---KGK  167 (527)
T ss_pred             cceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccc-----------------------cccccCCcEEE---CCE
Confidence            57777 8899999999999999999999999987743100                       00012223321   278


Q ss_pred             EEEEcc------cceeecccCCCCCceeeeeeeh
Q 042769          147 LFITRT------DYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       147 v~i~r~------d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      ||++..      ++.|+|||++||+++|++.+..
T Consensus       168 Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p  201 (527)
T TIGR03075       168 VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP  201 (527)
T ss_pred             EEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence            999875      7899999999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=8.5e-14  Score=146.19  Aligned_cols=137  Identities=20%  Similarity=0.252  Sum_probs=113.4

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.+ ++....||-|+||.|=+ +.......+|+|++++.+      .+....|-++|+.+ +.|.||+||..|.++.+
T Consensus       417 v~l~d-l~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~-~s~fIvrLYrTfrd~ky  494 (732)
T KOG0614|consen  417 VKLSD-LKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMEC-RSDFIVRLYRTFRDSKY  494 (732)
T ss_pred             cchhh-hhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhc-CchHHHHHHHHhccchh
Confidence            34444 66778999999999855 333344479999999752      33456777667776 79999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||.||-|- |.|...|++      ++.+.+..++.++..+   ++|||+++||.||||    |++.+|++++++++.++
T Consensus       495 vYmLmEaClGGElWTiLrd------Rg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAK  568 (732)
T KOG0614|consen  495 VYMLMEACLGGELWTILRD------RGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAK  568 (732)
T ss_pred             hhhhHHhhcCchhhhhhhh------cCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHH
Confidence            999999995 699999998      6789999998888777   789999999999999    89999999999887664

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.37  E-value=2.3e-13  Score=134.61  Aligned_cols=136  Identities=24%  Similarity=0.302  Sum_probs=106.7

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeecc--CcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEN--DKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~--~~~~~yLVm  480 (549)
                      |++.+.||.|+||.||+ .+..+++.+|+|.+...     ..+....|+..+.. ++||||+++++++.  .....|++|
T Consensus         2 y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           2 YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRE-LKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             ceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHh-cCCCccceeeeeeecCCCCEEEEEe
Confidence            77889999999999887 46678899999976532     23355678865544 49999999999775  345689999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-----ceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-----SVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-----~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||++ ++|.+++....  .....+++..++.++.|+   |.|||     +.+++|||||    +++.+|..+...+.+++
T Consensus        81 e~~~~~~L~~~l~~~~--~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~  158 (265)
T cd08217          81 EYCEGGDLAQLIQKCK--KERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAK  158 (265)
T ss_pred             hhccCCCHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccc
Confidence            9997 59999997642  123568888999999988   88999     8999999999    78888887776666544

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=8.9e-14  Score=150.20  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=94.1

Q ss_pred             cccccCCceEEE-eeeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cchh
Q 042769          414 EIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSLD  488 (549)
Q Consensus       414 ~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL~  488 (549)
                      +||+|.||+||- +++.+...+|||.|....   .+-...|| .|-+.++|.|||+++|++..++++-|.||-++ |+|.
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEI-aLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLS  660 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEI-ALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLS  660 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHH-HHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHH
Confidence            799999999877 577888899999888643   23355677 55666699999999999999999999999998 5999


Q ss_pred             hhhhhcccCCccccc--CchhhhHHhhhe---eecccceeEEEeecc
Q 042769          489 DLIQTYSDSSCNSVF--GEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       489 ~~L~~~~~~~~~~~l--~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      ++|+..     =+++  .+..+..+..||   |.|||++.|||||||
T Consensus       661 sLLrsk-----WGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIK  702 (1226)
T KOG4279|consen  661 SLLRSK-----WGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIK  702 (1226)
T ss_pred             HHHHhc-----cCCCccchhHHHHHHHHHHHHhhhhhhcceeecccc
Confidence            999873     2445  777888999999   889999999999999

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.37  E-value=4.5e-13  Score=140.48  Aligned_cols=139  Identities=19%  Similarity=0.149  Sum_probs=111.7

Q ss_pred             cccchhhhhhcCcCCccceee-----eeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCC
Q 042769          388 PFLDLNKLVRGGAQGRNVGKL-----FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQ  459 (549)
Q Consensus       388 ~~~~~~~~~~~~~~~~~igk~-----y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~  459 (549)
                      .+++.+....+......||+.     |.+.++||.|.|++|+++ +....+.||+|+.+..  ..+.+..||..|.+.-.
T Consensus        54 eqE~~~dY~kGGYHpV~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~  133 (590)
T KOG1290|consen   54 EQEDPEDYRKGGYHPVRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVRE  133 (590)
T ss_pred             cccChhhhhcCCCceeeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence            445566666666665566544     668999999999999884 8888999999988743  45677889977665322


Q ss_pred             ----C---CCeeEEeeeccC----cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ceeE
Q 042769          460 ----H---PNIVRWYGVEND----KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKV  524 (549)
Q Consensus       460 ----H---pNIVrl~g~~~~----~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~I  524 (549)
                          |   .+||+|++.|..    ..++|||+|++..+|..+|+.+    ..+.++...++.|++|+   |.||| .++|
T Consensus       134 ~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s----~YrGlpl~~VK~I~~qvL~GLdYLH~ecgI  209 (590)
T KOG1290|consen  134 GDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYS----NYRGLPLSCVKEICRQVLTGLDYLHRECGI  209 (590)
T ss_pred             cCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHh----CCCCCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence                3   379999999874    4579999999998999999983    36789999999999999   88999 6899


Q ss_pred             EEeecc
Q 042769          525 IIRDLS  530 (549)
Q Consensus       525 IHRDLK  530 (549)
                      ||-|||
T Consensus       210 IHTDlK  215 (590)
T KOG1290|consen  210 IHTDLK  215 (590)
T ss_pred             cccCCC
Confidence            999999

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.37  E-value=2.7e-13  Score=138.76  Aligned_cols=132  Identities=25%  Similarity=0.283  Sum_probs=101.9

Q ss_pred             eeecccccccCCceEEEe-eeecCc----hhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |+..+.||+|+||.||.. ...+|+    .+|+|.+....    ...+.+|+..+ +.++||||+++++++... ..+++
T Consensus         9 ~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~-~~l~h~niv~~~~~~~~~-~~~~v   86 (303)
T cd05110           9 LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIM-ASMDHPHLVRLLGVCLSP-TIQLV   86 (303)
T ss_pred             ceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHH-HhCCCCCcccEEEEEcCC-Cceee
Confidence            788899999999998874 444554    46888776431    22455777554 445999999999998764 46789


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||++ |+|.+++..+     ...+++..+..++.|+   |+|||+++|+|||||    |++.++..++..+++.+
T Consensus        87 ~e~~~~g~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          87 TQLMPHGCLLDYVHEH-----KDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             ehhcCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccc
Confidence            99997 7999998762     2357888889999998   899999999999999    77788877776666543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.37  E-value=1.3e-13  Score=143.87  Aligned_cols=135  Identities=22%  Similarity=0.312  Sum_probs=110.0

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce---
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF---  475 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~---  475 (549)
                      +++.|+..+.||+|+||.||.. ...+++.||||++...     ......+|+..+..+ +||||+++++++.....   
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM-DHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhc-cCCCHHHHHHHhhccccccc
Confidence            4556999999999999998874 5567899999987532     233456788666554 99999999998876654   


Q ss_pred             ---EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          476 ---VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       476 ---~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                         .|+|+||+.++|.+++..       ..+++..+..++.|+   |+|||+++|+|||||    +++.+|...+..+.+
T Consensus        92 ~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~  164 (343)
T cd07851          92 FQDVYLVTHLMGADLNNIVKC-------QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGL  164 (343)
T ss_pred             cccEEEEEecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccc
Confidence               899999998899998865       458899999999998   889999999999999    788888877776665


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       165 ~~  166 (343)
T cd07851         165 AR  166 (343)
T ss_pred             cc
Confidence            54

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.37  E-value=2.1e-13  Score=134.90  Aligned_cols=124  Identities=20%  Similarity=0.352  Sum_probs=101.0

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |.+.+.||+|+||.||. ....+|..+|+|.+...     ..+.+.+|++.+.. ++|+||+++++.+......|+++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~-~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAK-MKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             ceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHh-CCCCChhhhhheeccCCeEEEEEec
Confidence            78889999999999887 45667889999977643     23356688866544 4999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +. ++|.+++....    ...+++..+..++.|+   |.|||+++++|||||    +++.++.
T Consensus        81 ~~~~~L~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~  139 (257)
T cd08225          81 CDGGDLMKRINRQR----GVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGM  139 (257)
T ss_pred             CCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCC
Confidence            97 59999987622    2357888888999888   889999999999999    6666653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.37  E-value=1.8e-13  Score=137.37  Aligned_cols=130  Identities=22%  Similarity=0.257  Sum_probs=104.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcC--CCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASD--QHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l--~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |+..+.||+|+||.||.+ ...+++.||+|.+...    ....+.+|+..+..+.  .||||+++++++......|++||
T Consensus         3 y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e   82 (277)
T cd06917           3 YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIME   82 (277)
T ss_pred             hhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEe
Confidence            778889999999998884 5577899999987532    2334667776555442  49999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |+.| +|.++++.       ..+++..+..++.|+   |.|||+.+|+||||+    +++.+|......+.+
T Consensus        83 ~~~~~~L~~~~~~-------~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~  147 (277)
T cd06917          83 YAEGGSVRTLMKA-------GPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGV  147 (277)
T ss_pred             cCCCCcHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCc
Confidence            9975 99998865       358888899999888   889999999999999    777777766555443

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.37  E-value=1.4e-13  Score=141.82  Aligned_cols=135  Identities=24%  Similarity=0.304  Sum_probs=106.5

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+.|...+.||+|+||+||.. ...+++.||+|++...      ....+.+|+..+..+ +|||++++++++.+....|
T Consensus        19 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~   97 (313)
T cd06633          19 PEEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQL-KHPNTIEYKGCYLKEHTAW   97 (313)
T ss_pred             HHHHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhC-CCCCCccEEEEEEeCCEEE
Confidence            3344677788999999998874 5567899999977532      123456788665554 9999999999999999999


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++|||+.|+|.+++...     ...+++..+..++.|+   |.|||+++++|||||    +++.+|..+...+.+
T Consensus        98 lv~e~~~~~l~~~l~~~-----~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~  167 (313)
T cd06633          98 LVMEYCLGSASDLLEVH-----KKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGS  167 (313)
T ss_pred             EEEecCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCC
Confidence            99999999988888652     3457888888898888   889999999999999    777777665554443

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.37  E-value=2.4e-13  Score=133.52  Aligned_cols=130  Identities=27%  Similarity=0.329  Sum_probs=106.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVm  480 (549)
                      |...+.||+|++|.||.. ...+++.|++|.+....     .+.+.+|+..+.++ +||||+++++++...  ...++++
T Consensus         2 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           2 WTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL-QHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             ceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHc-CCCCEeeEEEEEecCCCCeEEEEE
Confidence            677889999999998874 45578999999776542     44566788666554 899999999999988  8899999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||++ ++|.+++..      ...+++..+..++.|+   |.|||+.+++|+||+    +++.+|......+..
T Consensus        81 e~~~~~~L~~~~~~------~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~  147 (260)
T cd06606          81 EYVSGGSLSSLLKK------FGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGC  147 (260)
T ss_pred             EecCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccccc
Confidence            9996 599999987      3378889999999998   889999999999999    777777766655543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.36  E-value=2.2e-13  Score=134.46  Aligned_cols=120  Identities=22%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             cCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cchhhhhhhcc
Q 042769          418 GSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSLDDLIQTYS  495 (549)
Q Consensus       418 G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~  495 (549)
                      |.||.||. .+..+++.||+|++....  ...+|...+... .||||+++++++...+..|++|||+. |+|.+++..  
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~--~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS--EYSRERLTIIPH-CVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK--   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh--hhhhHHHHHHhc-CCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH--
Confidence            88999888 577889999999987642  223444333333 79999999999999999999999998 599999876  


Q ss_pred             cCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          496 DSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       496 ~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                          ...+++..+..++.|+   |+|||+++|+|||||    +++.+|..+...+.+.
T Consensus        79 ----~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~  132 (237)
T cd05576          79 ----FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRW  132 (237)
T ss_pred             ----hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccch
Confidence                3458899999999998   899999999999999    8888888777666543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.36  E-value=1.6e-13  Score=139.74  Aligned_cols=134  Identities=23%  Similarity=0.288  Sum_probs=107.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.. ...+++.||||++...    ......+|+..+.....||||+++++++......|++|||+
T Consensus        17 ~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~   96 (296)
T cd06618          17 LENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELM   96 (296)
T ss_pred             heeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeecc
Confidence            888999999999998874 4456899999987642    22345567766666657999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .++|.+++...     ...+++..+..++.|+   |+|||+ .+|+||||+    |++.+|.+++..+.+.+
T Consensus        97 ~~~l~~l~~~~-----~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~  163 (296)
T cd06618          97 STCLDKLLKRI-----QGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISG  163 (296)
T ss_pred             CcCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccch
Confidence            88887777652     2367888888899998   889997 699999999    78888887777666543

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.36  E-value=2.2e-13  Score=138.02  Aligned_cols=134  Identities=22%  Similarity=0.307  Sum_probs=104.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~yLVmE  481 (549)
                      |+..+.||.|++|.||.. ...+++.+|+|.+...    ....+.+|++.+.. ++||||++++++|..  ...+|++||
T Consensus         3 ~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           3 IVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKS-CKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             eEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHh-CCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            788899999999998874 5567899999977642    23457788866544 599999999998854  346899999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |++ ++|.+++.....  ....+++..+..++.|+   |.|||+.+++||||+    +++.++.+.+..+.+
T Consensus        82 ~~~~~~L~~~l~~~~~--~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~  151 (287)
T cd06621          82 YCEGGSLDSIYKKVKK--RGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGV  151 (287)
T ss_pred             ecCCCCHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccc
Confidence            997 599888765221  23457888888999988   889999999999999    777777666555544

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.36  E-value=1.1e-12  Score=141.53  Aligned_cols=134  Identities=24%  Similarity=0.217  Sum_probs=101.4

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhH---HHHHH--H--HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce--
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVA---VKRLV--R--ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF--  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VA---VK~i~--~--~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~--  475 (549)
                      ++......+||+|+|-+||++ +..+|-+||   ||.=.  +  ...+++..|++. ++.++|||||++|.++.+...  
T Consensus        39 gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~l-LKsL~H~NIirfy~SW~d~~n~~  117 (632)
T KOG0584|consen   39 GRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHL-LKSLKHPNIIRFYDSWVDTDNKT  117 (632)
T ss_pred             CceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHH-HccCCCCceeeeeeheecCCCce
Confidence            444556789999999998884 777888888   33211  1  134567789954 555699999999999987654  


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce--eEEEeecc----cc-ccCCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV--KVIIRDLS----LW-KADGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~--~IIHRDLK----Ll-~~~G~p~~~l~~  544 (549)
                      +.+|+|++. |+|..|++++      +.+....+..+++||   |.|||++  .|||||||    ++ -..|..++=+|+
T Consensus       118 in~iTEL~TSGtLr~Y~kk~------~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLG  191 (632)
T KOG0584|consen  118 INFITELFTSGTLREYRKKH------RRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLG  191 (632)
T ss_pred             eeeeeecccCCcHHHHHHHh------ccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchh
Confidence            889999997 8999999994      457778899999999   8899965  69999999    33 344556655555


Q ss_pred             hh
Q 042769          545 LM  546 (549)
Q Consensus       545 Lm  546 (549)
                      |+
T Consensus       192 LA  193 (632)
T KOG0584|consen  192 LA  193 (632)
T ss_pred             HH
Confidence            44

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.36  E-value=1.1e-13  Score=138.79  Aligned_cols=130  Identities=24%  Similarity=0.290  Sum_probs=106.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |...+.||.|++|.||.. ...+++.+|+|++....     .....+|+..+..+ +|+||+++++++......+++|||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL-NHPNIIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHh-cCCCcchHHHhhccCCCEEEEEec
Confidence            456678999999998874 55678999999776432     23556788666555 899999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      +.++|.+++...     ...+++..+..++.|+   |.|||+.+|+|+|||    +++.+|.+....+.
T Consensus        80 ~~~~l~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~  143 (283)
T cd05118          80 MDTDLYKLIKDR-----QRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFG  143 (283)
T ss_pred             cCCCHHHHHHhh-----cccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeee
Confidence            999999988762     2468889999999998   889999999999999    78888877665544

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.36  E-value=1.3e-13  Score=143.82  Aligned_cols=132  Identities=26%  Similarity=0.301  Sum_probs=102.5

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--------
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--------  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--------  473 (549)
                      +.+|.+.+.||.|+||.||.. ...+|+.||+|.+...   ......+|+..+..+ +||||+++++++...        
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~   82 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRL-DHDNIVKVYEVLGPSGSDLTEDV   82 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhc-CCCcchhhHhhhccccccccccc
Confidence            455999999999999998874 6677899999977543   233466788766555 999999999876654        


Q ss_pred             ------ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCc
Q 042769          474 ------DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPS  539 (549)
Q Consensus       474 ------~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~  539 (549)
                            ...|++|||+.++|.+++..       ..+++..++.++.|+   |.|||+.+|+|||||    |++. ++.++
T Consensus        83 ~~~~~~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~k  155 (342)
T cd07854          83 GSLTELNSVYIVQEYMETDLANVLEQ-------GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLK  155 (342)
T ss_pred             ccccccceEEEEeecccccHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEE
Confidence                  35799999999999888754       358899999999999   889999999999999    6653 33444


Q ss_pred             hhhhhh
Q 042769          540 PLLLSL  545 (549)
Q Consensus       540 ~~l~~L  545 (549)
                      ...+++
T Consensus       156 l~dfg~  161 (342)
T cd07854         156 IGDFGL  161 (342)
T ss_pred             ECCccc
Confidence            444433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.35  E-value=1.1e-13  Score=158.48  Aligned_cols=136  Identities=24%  Similarity=0.313  Sum_probs=110.5

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ...+.-+++-+..||.|.||.||-+ +..+|...|||-++-..     ...+.+|. .+...++|||+|++||+....+.
T Consensus      1230 lsnV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm-~vlE~lnHpNlV~YyGVEvHRek 1308 (1509)
T KOG4645|consen 1230 LSNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEM-KVLEGLNHPNLVRYYGVEVHREK 1308 (1509)
T ss_pred             hccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHH-HHHHhccCccccccCceeecHHH
Confidence            3455556788889999999999885 77889999999877432     22455666 45567799999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ++|.||||. |+|.++++.      .+..++-..+.+..|+   +.|||+.||||||||    |++.+|--+..+++
T Consensus      1309 v~IFMEyC~~GsLa~ll~~------gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFG 1379 (1509)
T KOG4645|consen 1309 VYIFMEYCEGGSLASLLEH------GRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFG 1379 (1509)
T ss_pred             HHHHHHHhccCcHHHHHHh------cchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeeccc
Confidence            999999997 699999977      4457777778888888   889999999999999    88888855544443

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.35  E-value=3.1e-13  Score=135.22  Aligned_cols=137  Identities=20%  Similarity=0.152  Sum_probs=100.1

Q ss_pred             eeecccccccCCceEEEee----eecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----
Q 042769          409 FVSNTEIAKGSNGTVVYEG----IYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----  474 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~----~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----  474 (549)
                      |.+.+.||+|+||.||...    ..+++.||||++...     ..+.+.+|+..+. .++||||+++++++....     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~-~l~h~~i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMK-EFDHPNVIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHh-cCCCCCcceEEEEEccCCCCCcc
Confidence            5667899999999988742    235788999977642     2335668886554 459999999999875432     


Q ss_pred             -eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          475 -FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       475 -~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ..++++||+. |+|.+++...........+++..+..++.|+   |+|||+++|+|||||    |++.++......+.+
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~  159 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGL  159 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccc
Confidence             2478899997 6998887542211122347788889999998   899999999999999    777777766555544


Q ss_pred             h
Q 042769          546 M  546 (549)
Q Consensus       546 m  546 (549)
                      .
T Consensus       160 ~  160 (273)
T cd05074         160 S  160 (273)
T ss_pred             c
Confidence            3

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.35  E-value=3.8e-13  Score=133.37  Aligned_cols=129  Identities=28%  Similarity=0.266  Sum_probs=101.5

Q ss_pred             ccccccCCceEEEee-ee-cC--chhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          413 TEIAKGSNGTVVYEG-IY-EG--RPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~-~~-~g--~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.||+|+||.||+.. .. .+  ..||+|.+....    .+.+.+|+..+.++ +||||+++++.+.. ...+++|||++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSL-DHENLIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhc-CCCCccceeEEEcC-CeEEEEEEecC
Confidence            468999999988742 22 23  368999887542    33566788666555 99999999999988 88999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++....    ...+++..++.++.|+   |+|||+++++|||||    |++.+|..+...+++.+
T Consensus        79 ~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~  145 (257)
T cd05040          79 LGSLLDRLRKDA----LGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMR  145 (257)
T ss_pred             CCcHHHHHHhcc----cccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccc
Confidence             69999998732    1457888999999998   899999999999999    78888877777665543

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.34  E-value=3.7e-13  Score=133.82  Aligned_cols=129  Identities=22%  Similarity=0.145  Sum_probs=96.6

Q ss_pred             ccccccCCceEEEee-e---ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeecc-CcceEEEEeccc
Q 042769          413 TEIAKGSNGTVVYEG-I---YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEN-DKDFVYLSLERC  483 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~-~---~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~-~~~~~yLVmE~~  483 (549)
                      +.||+|+||.||++. .   ..+..+|+|++...    ....+.+|+..+ +.++||||+++++++. .++..+++|||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   79 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIM-KDFSHPNVLSLLGICLPSEGSPLVVLPYM   79 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHH-ccCCCCCcceEEEEeecCCCCcEEEEecC
Confidence            468999999988742 2   23457999977532    233556787544 5569999999999765 455689999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.++.++...+.+.+
T Consensus        80 ~~~~L~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~  146 (262)
T cd05058          80 KHGDLRNFIRSE-----THNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLAR  146 (262)
T ss_pred             CCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccc
Confidence            7 6999999762     2335566677788888   899999999999999    88888887776666554

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.34  E-value=5.5e-13  Score=130.42  Aligned_cols=133  Identities=32%  Similarity=0.413  Sum_probs=108.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |...+.||+|++|.||.. ...+++.+++|++...   ......+|+..+.. ++|+||+++++++......++++||++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~-l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKK-CKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHh-CCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            778889999999998874 4457889999987654   23456788865544 489999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       ++|.+++...     ...+++..+..++.|+   |.|||.++++||||+    +++.+|...+..+.+++
T Consensus        81 ~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~  146 (253)
T cd05122          81 GGSLKDLLKST-----NQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSA  146 (253)
T ss_pred             CCcHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccc
Confidence             5999998772     1468889999999988   889999999999999    77888877666665543

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.34  E-value=3.4e-13  Score=144.51  Aligned_cols=132  Identities=19%  Similarity=0.186  Sum_probs=105.4

Q ss_pred             eeecccccccCCceEEEe---eeec--CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE---GIYE--GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~---~~~~--g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ..+.++||.|-||.||..   ....  .-.||||..+..    ..+.+..|...| +.++|||||+|+|+|.. ..+|||
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iM-rnfdHphIikLIGv~~e-~P~Wiv  468 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIM-RNFDHPHIIKLIGVCVE-QPMWIV  468 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHH-HhCCCcchhheeeeeec-cceeEE
Confidence            455689999999998752   2212  346899988753    455678888555 55599999999999975 568999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+++ |.|.+||+..     ...++......++.|+   |.|||++++|||||-    |+.+.-=.++.+++|.|
T Consensus       469 mEL~~~GELr~yLq~n-----k~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR  539 (974)
T KOG4257|consen  469 MELAPLGELREYLQQN-----KDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSR  539 (974)
T ss_pred             EecccchhHHHHHHhc-----cccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhh
Confidence            99998 9999999983     3568888899999999   999999999999998    77777666777777766

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.34  E-value=1.7e-13  Score=137.37  Aligned_cols=132  Identities=23%  Similarity=0.326  Sum_probs=107.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |+..+.||+|.||.||.. ...+++.+|+|.+....     .+....|+..+... +|+||+++++++...+..+++|||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKEL-KHPNIVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhc-CCCCHHHHHhhhhcCCceEEEecC
Confidence            456788999999998874 55678999999887532     23455787655544 899999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++++|.+++....     ..+++..+..++.|+   |.|||+++|+||||+    +++.+|..++..+.+.
T Consensus        80 ~~~~l~~~i~~~~-----~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~  145 (282)
T cd07829          80 CDMDLKKYLDKRP-----GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA  145 (282)
T ss_pred             cCcCHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcc
Confidence            9999999998721     468899999999998   889999999999999    7778787776665543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.34  E-value=4.7e-13  Score=131.74  Aligned_cols=134  Identities=22%  Similarity=0.298  Sum_probs=107.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |.+.+.||.|+||.||.. ...+++.+|+|++...     ....+.+|++.+..+ +|||++++++.+......++++|+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           2 YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL-NHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             ceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhc-CCCChhheEEEEecCCEEEEEEEe
Confidence            788899999999998874 5567899999987643     234566788666555 899999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ++| +|.+++.....  ....+++..+..++.|+   |.|||+++++|+||+    +++.++......+.+
T Consensus        81 ~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~  149 (258)
T cd08215          81 ADGGDLSQKIKKQKK--EGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGI  149 (258)
T ss_pred             cCCCcHHHHHHHhhc--cCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccc
Confidence            985 99999987321  13568899999999998   889999999999999    777777665554443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.34  E-value=3.1e-13  Score=137.92  Aligned_cols=130  Identities=24%  Similarity=0.294  Sum_probs=104.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |....+||+|+||.||.. ...+++.||+|.+...   ....+.+|+..+. .++|+||+++++++...+..|++|||++
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~~~  100 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMR-DYQHENVVEMYNSYLVGDELWVVMEFLE  100 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHH-hcCCcchhheeeEEEeCCEEEEEEecCC
Confidence            333468999999998874 5567899999976521   2335667886554 4599999999999999999999999998


Q ss_pred             c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      + +|.+++..       ..+++..+..++.|+   |+|||+.+++|||||    +++.+|......++++
T Consensus       101 ~~~L~~~~~~-------~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~  163 (292)
T cd06657         101 GGALTDIVTH-------TRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFC  163 (292)
T ss_pred             CCcHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccc
Confidence            5 88887754       347888889999998   889999999999999    8888888777766654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.33  E-value=5.4e-13  Score=135.34  Aligned_cols=130  Identities=26%  Similarity=0.339  Sum_probs=104.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |...+.||+|++|.||+. ...+++.+|+|++...   ..+.+.+|+..+. .++||||+++++++...+..++++||+.
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~-~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMR-DYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHH-HcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            445579999999998874 4567889999966422   2334667886554 4599999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                       ++|.+++..       ..+++..+..++.|+   |+|||+++++||||+    +++.+|......+.++
T Consensus       100 ~~~L~~~~~~-------~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~  162 (285)
T cd06648         100 GGALTDIVTH-------TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFC  162 (285)
T ss_pred             CCCHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccc
Confidence             599998865       347888888999988   889999999999999    7888887776665544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.33  E-value=7.8e-14  Score=150.54  Aligned_cols=135  Identities=23%  Similarity=0.275  Sum_probs=114.6

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++...+|.|+||.||+ +++.+++..|+|.++.+   .......|+ .+++-++|||||.++|.+...+..++.|||
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei-~~~~dc~h~nivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEI-GMLRDCRHPNIVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccce-eeeecCCCcChHHHHhhhhhhcCcEEEEEe
Confidence            4488899999999999998 68899999999999865   334456788 455666999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |. |+|.+.-+-      .+.+++.++...++..   |.|||+++-+|||||    |+...|..+..+++-..+
T Consensus        94 cgggslQdiy~~------TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaq  161 (829)
T KOG0576|consen   94 CGGGSLQDIYHV------TGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQ  161 (829)
T ss_pred             cCCCcccceeee------cccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhh
Confidence            98 599888766      6789999999998887   889999999999999    888888887776654433

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.32  E-value=3.9e-13  Score=137.79  Aligned_cols=129  Identities=19%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             ecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          411 SNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      +++.+|.|+++.|+ ++..+++.||||++...     ....+.+|+..+..+ +||||+++++++...+..|++||||+ 
T Consensus         6 i~~~~~~~~~v~~~-~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l-~h~~i~~~~~~~~~~~~~~~~~e~~~~   83 (314)
T cd08216           6 IGKCFEDLMIVHLA-KHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL-QHPNILPYVTSFIVDSELYVVSPLMAY   83 (314)
T ss_pred             hhHhhcCCceEEEE-EecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhc-CCcchhhhhheeecCCeEEEEEeccCC
Confidence            33444555554322 45668999999986532     234677888666554 99999999999999999999999998 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |+|.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|..+...+.+
T Consensus        84 ~~l~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~  147 (314)
T cd08216          84 GSCEDLLKTHF----PEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRY  147 (314)
T ss_pred             CCHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCcc
Confidence            69999998632    3458888999999998   899999999999999    788878766554443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.32  E-value=3.3e-13  Score=140.83  Aligned_cols=133  Identities=23%  Similarity=0.306  Sum_probs=105.6

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----  474 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----  474 (549)
                      .+.|...+.||+|+||.||.. ...+|+.||||++.+.     ....+.+|+..+.. ++||||+++++++....     
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~-l~h~niv~~~~~~~~~~~~~~~   92 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKH-MQHENVIGLLDVFTSAVSGDEF   92 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHh-cCCCCccchhheecccccCCCC
Confidence            345999999999999998874 5667999999987642     12345678866555 49999999999986543     


Q ss_pred             -eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 -FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 -~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                       ..|++|||+.++|.+++.        ..+++..+..++.|+   |+|||+++++|||||    |++.+|.++...+.++
T Consensus        93 ~~~~lv~e~~~~~l~~~~~--------~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~  164 (342)
T cd07879          93 QDFYLVMPYMQTDLQKIMG--------HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLA  164 (342)
T ss_pred             ceEEEEecccccCHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCC
Confidence             469999999888776652        247888889999998   899999999999999    8888888887777665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       165 ~  165 (342)
T cd07879         165 R  165 (342)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.32  E-value=1.1e-13  Score=133.17  Aligned_cols=123  Identities=20%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHHh-----------------------------hhhHHHHHHHHhcCCCCC
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH-----------------------------DVAFKEIQNLIASDQHPN  462 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~-----------------------------~~~~~Ei~~L~~~l~HpN  462 (549)
                      ...||+|+||.||.+...+|+.||||+++....                             ....+|+..|.++ .+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRL-VTAG   80 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHH-HHCC
Confidence            368999999999886444899999998754310                             0112477666555 5555


Q ss_pred             eeEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecc-cceeEEEeecc----ccc
Q 042769          463 IVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRL-DSVKVIIRDLS----LWK  533 (549)
Q Consensus       463 IVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yL-H~~~IIHRDLK----Ll~  533 (549)
                      +.....+...  ..+|||||++| +|...+..      ...+++..+..++.|+   |.|| |+.+|+|||||    |++
T Consensus        81 v~~p~~~~~~--~~~iVmE~i~g~~l~~~~~~------~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~  152 (190)
T cd05147          81 IPCPEPILLK--SHVLVMEFIGDDGWAAPRLK------DAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH  152 (190)
T ss_pred             CCCCcEEEec--CCEEEEEEeCCCCCcchhhh------cCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE
Confidence            4322221111  23799999986 55444322      3468888899999987   8898 79999999999    665


Q ss_pred             cCCCCchhhhh
Q 042769          534 ADGHPSPLLLS  544 (549)
Q Consensus       534 ~~G~p~~~l~~  544 (549)
                       +|.....++.
T Consensus       153 -~~~v~LiDFG  162 (190)
T cd05147         153 -DGKLYIIDVS  162 (190)
T ss_pred             -CCcEEEEEcc
Confidence             4665555444

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.31  E-value=4.6e-13  Score=137.52  Aligned_cols=133  Identities=25%  Similarity=0.307  Sum_probs=105.7

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|...+.||+|+||.||+. ...+++.+|+|.+...      ....+.+|+..+.. ++|+|++++++++......++|
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv   93 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTIQYRGCYLREHTAWLV   93 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHh-CCCCCcccEEEEEEcCCeeEEE
Confidence            33777889999999998874 5567888999876421      22345678865555 4999999999999999999999


Q ss_pred             ecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          480 LERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       480 mE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |||+.|+|.+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.+|.+....+.+
T Consensus        94 ~e~~~~~l~~~~~~~-----~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~  161 (308)
T cd06634          94 MEYCLGSASDLLEVH-----KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGS  161 (308)
T ss_pred             EEccCCCHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCccc
Confidence            999999988887652     3457888889999888   889999999999999    778888766665544

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.31  E-value=1.6e-13  Score=131.80  Aligned_cols=113  Identities=18%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--eEEEEeccccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--FVYLSLERCTC  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--~~yLVmE~~~G  485 (549)
                      |++.+++|+|.|++|+- ....++++++||++++-....+.+|+.+|..+..|||||+|++...+..  ...||+||++.
T Consensus        40 Yeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n  119 (338)
T KOG0668|consen   40 YEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNN  119 (338)
T ss_pred             HHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhcc
Confidence            99999999999999766 3557789999999998777789999999999988999999999988765  46799999975


Q ss_pred             -chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          486 -SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       486 -sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                       +...+...         ++...++.++.|+   |.|||++||+|||+|
T Consensus       120 ~Dfk~ly~t---------l~d~dIryY~~elLkALdyCHS~GImHRDVK  159 (338)
T KOG0668|consen  120 TDFKQLYPT---------LTDYDIRYYIYELLKALDYCHSMGIMHRDVK  159 (338)
T ss_pred             ccHHHHhhh---------hchhhHHHHHHHHHHHHhHHHhcCcccccCC
Confidence             76665543         7888999999999   889999999999999

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.31  E-value=4.5e-13  Score=132.27  Aligned_cols=133  Identities=23%  Similarity=0.264  Sum_probs=104.6

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.||. ....+++.+|+|.+...     ......+|+..+..+ +|+||+++++++......|++|||
T Consensus         2 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           2 FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASV-NHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             ceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhC-CCCCchhhhhhhccCCEEEEEehh
Confidence            78889999999999887 46677889999976643     223455777666555 899999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ++| +|.+++....  .....+++..+..++.|+   |.|||+.+++||||+    +++.++..+...+.
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g  148 (256)
T cd08530          81 APFGDLSKAISKRK--KKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLG  148 (256)
T ss_pred             cCCCCHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeecc
Confidence            975 9999987632  112457888888998888   889999999999999    66776665555443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.31  E-value=7.9e-14  Score=153.13  Aligned_cols=132  Identities=23%  Similarity=0.241  Sum_probs=103.8

Q ss_pred             eeecccccccCCceEEEeee-ec----CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGI-YE----GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~-~~----g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ....++||+|+||+||+... -.    +-+||+|++...    ....++.|..+| +.++|||++||+++|.... +-||
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~m-asldHpnl~RLLgvc~~s~-~qlv  775 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRM-ASLDHPNLLRLLGVCMLST-LQLV  775 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHH-hcCCCchHHHHhhhcccch-HHHH
Confidence            33457999999999876321 12    457899977753    344566777454 5569999999999998776 7789


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|++ |.|.+|++.++     ..+.....+.+..||   |.|||.++++||||-    |+++-.+.+.-++.|++
T Consensus       776 tq~mP~G~LlDyvr~hr-----~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~  846 (1177)
T KOG1025|consen  776 TQLMPLGCLLDYVREHR-----DNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAK  846 (1177)
T ss_pred             HHhcccchHHHHHHHhh-----ccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhh
Confidence            99998 79999999854     567888889999999   999999999999998    88887777776666543

>PRK10345 hypothetical protein; Provisional

Probab=99.30  E-value=6.1e-13  Score=130.00  Aligned_cols=122  Identities=14%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcC----CCCCeeEEeeeccCcc---eEE-EEe
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASD----QHPNIVRWYGVENDKD---FVY-LSL  480 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l----~HpNIVrl~g~~~~~~---~~y-LVm  480 (549)
                      .+.||+|+||.||. +..++.. +||++...   ......+|+..+..+.    .||||++++|+++++.   .++ +||
T Consensus         7 ~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~   84 (210)
T PRK10345          7 QSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIA   84 (210)
T ss_pred             cceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEe
Confidence            57999999998775 6556555 58866643   3446789997776653    5899999999998874   444 789


Q ss_pred             cccc---cchhhhhhhcccCCcccccCchhhhHHhhhe----eecccceeEEEeecc----ccccC--CCCchhhhh
Q 042769          481 ERCT---CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY----KLRLDSVKVIIRDLS----LWKAD--GHPSPLLLS  544 (549)
Q Consensus       481 E~~~---GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi----L~yLH~~~IIHRDLK----Ll~~~--G~p~~~l~~  544 (549)
                      ||+.   |+|.+++.+       ..+++.  ..++.|+    ++|||+++|+|||||    |++.+  +...++|++
T Consensus        85 e~~G~~~~tL~~~l~~-------~~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiD  152 (210)
T PRK10345         85 DFDGKPSITLTEFAEQ-------CRYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCD  152 (210)
T ss_pred             cCCCCcchhHHHHHHc-------ccccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEE
Confidence            9943   599999965       235444  2334444    489999999999999    66643  333444443

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.28  E-value=2.1e-12  Score=131.83  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=95.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeec---CchhHHHHHHHHH--------------hhhhHHHHHHHHhcCCCCCeeE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYE---GRPVAVKRLVRAL--------------HDVAFKEIQNLIASDQHPNIVR  465 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~---g~~VAVK~i~~~~--------------~~~~~~Ei~~L~~~l~HpNIVr  465 (549)
                      ..++.|++.++||+|+||.||+. ...+   +..+|+|......              ......++..+ ..+.|+||++
T Consensus         9 i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~h~~i~~   87 (294)
T PHA02882          9 ITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNI-HNIDHLGIPK   87 (294)
T ss_pred             cCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHh-ccCCCCCCCc
Confidence            34456999999999999998874 3333   4455555322110              00111222222 3458999999


Q ss_pred             EeeeccCcc----eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          466 WYGVENDKD----FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       466 l~g~~~~~~----~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      +++++....    ..+++||++..++.+++..      ....++..+..++.|+   |+|||+++|+|||||    |++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~  161 (294)
T PHA02882         88 YYGCGSFKRCRMYYRFILLEKLVENTKEIFKR------IKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDG  161 (294)
T ss_pred             EEEeeeEecCCceEEEEEEehhccCHHHHHHh------hccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC
Confidence            999765443    4578889887777777655      2335677788899988   889999999999999    8888


Q ss_pred             CCCCchhhhhhhh
Q 042769          535 DGHPSPLLLSLMR  547 (549)
Q Consensus       535 ~G~p~~~l~~Lmr  547 (549)
                      ++.+.+.++++++
T Consensus       162 ~~~~~l~DFGla~  174 (294)
T PHA02882        162 NNRGYIIDYGIAS  174 (294)
T ss_pred             CCcEEEEEcCCce
Confidence            8888877777754

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.28  E-value=5.9e-13  Score=131.12  Aligned_cols=125  Identities=29%  Similarity=0.305  Sum_probs=100.5

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ||+|+||.||.. ...+++.+|+|.+....      ...+..|+..+ +.++||||+++++.+......|++||++. ++
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNIL-SRINHPFIVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHH-HHcCCCcHHHHHHHeecCCeeEEEEecCCCCc
Confidence            699999998874 44568899999776532      23566777554 45589999999999999999999999996 69


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |.+++..      ...+++..+..++.|+   |.|||+++++|+||+    +++.+|......+.++
T Consensus        80 L~~~l~~------~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~  140 (250)
T cd05123          80 LFSHLSK------EGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLA  140 (250)
T ss_pred             HHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcc
Confidence            9999987      4468889999999988   889999999999999    7777776655554443

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=3.1e-13  Score=132.71  Aligned_cols=132  Identities=19%  Similarity=0.271  Sum_probs=107.5

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----eEE
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----FVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----~~y  477 (549)
                      .+-.+.||-|+||.|+- .+-.+|+.||+|++..-     ...+.++|+. |+...+|.|+...++...-..     ++|
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~k-mLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIK-MLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHH-HHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            34457999999996544 47788999999988742     3557889994 556669999999998876443     589


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++.|+|..+|...|-.      ...++.+.+.-++.||   |.|||+.+|+|||||    |+++|---++-.++|+|
T Consensus       134 V~TELmQSDLHKIIVS------PQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLAR  204 (449)
T KOG0664|consen  134 VLTELMQSDLHKIIVS------PQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLAR  204 (449)
T ss_pred             HHHHHHHhhhhheecc------CCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEeccccccc
Confidence            9999999999999877      6789999999999999   889999999999999    67777666666777776

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=8e-13  Score=136.85  Aligned_cols=130  Identities=23%  Similarity=0.305  Sum_probs=103.8

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH--H--------HhhhhHHHHHHHHhcCCCCCeeEEeee
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--A--------LHDVAFKEIQNLIASDQHPNIVRWYGV  469 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~  469 (549)
                      +-..+.++|-+..+||+|+|+.||++ ++...+.||||+-..  .        ....+.+|..+.. .++||.||++|++
T Consensus       457 DHptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHK-eLDHpRIVKlYDy  535 (775)
T KOG1151|consen  457 DHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHK-ELDHPRIVKLYDY  535 (775)
T ss_pred             cCcchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhh-ccCcceeeeeeee
Confidence            45677788999999999999998885 778889999995432  1        2335678885554 4599999999999


Q ss_pred             cc-CcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccce--eEEEeecc---ccccCCC
Q 042769          470 EN-DKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV--KVIIRDLS---LWKADGH  537 (549)
Q Consensus       470 ~~-~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~--~IIHRDLK---Ll~~~G~  537 (549)
                      |. +.+.+|-|+|||+| +|.-||+.      ..-+++..++.|+.||   |.||.+.  .|||-|||   ++..+|.
T Consensus       536 fslDtdsFCTVLEYceGNDLDFYLKQ------hklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~Gt  607 (775)
T KOG1151|consen  536 FSLDTDSFCTVLEYCEGNDLDFYLKQ------HKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGT  607 (775)
T ss_pred             eeeccccceeeeeecCCCchhHHHHh------hhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCc
Confidence            87 45568999999998 89999988      4568999999999999   8899854  69999999   4444443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.27  E-value=8.9e-12  Score=132.02  Aligned_cols=136  Identities=15%  Similarity=0.264  Sum_probs=106.0

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh--hhhcCCCccccccee
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD--YVKTAPHITEEGAVT   77 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~--~v~~sP~~~~dg~v~   77 (549)
                      ++|+++.+....-.|..|.         |+..++.++.+..||.|||+|+ .|..+|.+....  ..-++|.+..||.||
T Consensus        45 ~~W~~~~~~~~~~~~~~~~---------~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~  115 (370)
T COG1520          45 LLWSVSLGSGGGGIYAGPA---------PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIY  115 (370)
T ss_pred             eeeeeecccCccceEeccc---------cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEE
Confidence            4688764443333333231         3666777888889999999999 788899999985  678888888899999


Q ss_pred             ecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceee
Q 042769           78 LGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQ  157 (549)
Q Consensus        78 ~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~  157 (549)
                      +|+.++.+|++|+.||+++|++..+. +                         +....++.+   ..++||+++.|++|+
T Consensus       116 ~g~~~g~~y~ld~~~G~~~W~~~~~~-~-------------------------~~~~~~~v~---~~~~v~~~s~~g~~~  166 (370)
T COG1520         116 VGSWDGKLYALDASTGTLVWSRNVGG-S-------------------------PYYASPPVV---GDGTVYVGTDDGHLY  166 (370)
T ss_pred             EecccceEEEEECCCCcEEEEEecCC-C-------------------------eEEecCcEE---cCcEEEEecCCCeEE
Confidence            99999999999999999999998863 0                         112223333   238999999999999


Q ss_pred             cccCCCCCceeeeeeeh
Q 042769          158 SFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       158 a~d~~~g~~~Wn~~~~~  174 (549)
                      |+|+.+|+.+|++.+..
T Consensus       167 al~~~tG~~~W~~~~~~  183 (370)
T COG1520         167 ALNADTGTLKWTYETPA  183 (370)
T ss_pred             EEEccCCcEEEEEecCC
Confidence            99999999999988765

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.27  E-value=1.1e-12  Score=130.59  Aligned_cols=119  Identities=23%  Similarity=0.271  Sum_probs=91.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHH--------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.+.||+|+||.||.. ....+..+++|.++.        .....+.+|+..+ +.++||||+++++++.+....+++
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLL-SKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHH-HhCCCCcHHHHHHHHhcCCceEEE
Confidence            788899999999998873 444444454443332        1122455677544 445999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      |||+. ++|.+++.....  ....+++..++.++.|+   |.|||+++++|+|||
T Consensus        81 ~e~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~  133 (260)
T cd08222          81 TEYCEGRDLDCKLEELKH--TGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLK  133 (260)
T ss_pred             EEeCCCCCHHHHHHHHhh--cccccCHHHHHHHHHHHHHHHHHHHHcCccccCCC
Confidence            99998 599988875321  23468899999999998   889999999999999

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.26  E-value=6.6e-13  Score=127.53  Aligned_cols=125  Identities=22%  Similarity=0.146  Sum_probs=87.9

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHH-----------------------------hhhhHHHHHHHHhcCCCCC
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----------------------------HDVAFKEIQNLIASDQHPN  462 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----------------------------~~~~~~Ei~~L~~~l~HpN  462 (549)
                      ...||+|+||.||++...+|+.||||+++...                             .....+|+..+.++ .|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRL-YEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHH-HhCC
Confidence            46899999999988644489999999766421                             01123577666554 7787


Q ss_pred             eeEEeeeccCcceEEEEeccccc-chhhh-hhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----cc
Q 042769          463 IVRWYGVENDKDFVYLSLERCTC-SLDDL-IQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LW  532 (549)
Q Consensus       463 IVrl~g~~~~~~~~yLVmE~~~G-sL~~~-L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll  532 (549)
                      |.....+...  ..||||||++| ++... +..       ..+++..+..++.|+   +.+||. +||+|||||    |+
T Consensus        81 i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~-------~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll  151 (190)
T cd05145          81 VPVPEPILLK--KNVLVMEFIGDDGSPAPRLKD-------VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILY  151 (190)
T ss_pred             CCCceEEEec--CCEEEEEEecCCCchhhhhhh-------ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEE
Confidence            6433332222  24899999986 34332 322       356777888898888   889999 999999999    66


Q ss_pred             ccCCCCchhhhhhhh
Q 042769          533 KADGHPSPLLLSLMR  547 (549)
Q Consensus       533 ~~~G~p~~~l~~Lmr  547 (549)
                      + +|.+.+.++++++
T Consensus       152 ~-~~~~~liDFG~a~  165 (190)
T cd05145         152 H-DGKPYIIDVSQAV  165 (190)
T ss_pred             E-CCCEEEEEcccce
Confidence            6 8888888777665

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.21  E-value=2.6e-12  Score=122.02  Aligned_cols=134  Identities=23%  Similarity=0.300  Sum_probs=109.7

Q ss_pred             eeecccccccCCceEE-EeeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVV-YEGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~-~~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      ..-...||+|+||.|- +++..+|+..|+|++...    ...+.++|+...++...+|.+|++||.+.....++|.||.|
T Consensus        48 L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M  127 (282)
T KOG0984|consen   48 LVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELM  127 (282)
T ss_pred             hhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHh
Confidence            4445789999999873 478999999999988854    23456788888888889999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      .-||..+-+..-  ...+.++|..+-+++..+   |.|||+ ..+||||+|    |++.+|+.+.-+++
T Consensus       128 ~tSldkfy~~v~--~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFG  194 (282)
T KOG0984|consen  128 DTSLDKFYRKVL--KKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFG  194 (282)
T ss_pred             hhhHHHHHHHHH--hcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccc
Confidence            988877755421  235678898888888877   889995 689999999    99999998776554

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.17  E-value=3.4e-11  Score=123.45  Aligned_cols=123  Identities=18%  Similarity=0.153  Sum_probs=104.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH--HHhhhhHHHHHHHHhcCCC-C----CeeEEeeeccCcce
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--ALHDVAFKEIQNLIASDQH-P----NIVRWYGVENDKDF  475 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--~~~~~~~~Ei~~L~~~l~H-p----NIVrl~g~~~~~~~  475 (549)
                      .+..+|.+.+.+|+|.||.|+.+ +..++..||||+++.  ...+.+.-|++.|.++..+ |    -+|++.++|...++
T Consensus        86 ~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   86 ILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            34566999999999999998774 666699999999984  3456677888877776433 3    38899999999999


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +|||+|.+.-|+.++|..+.    ..+++...++.+..|+   ++|||+.+++|-|||
T Consensus       166 iCivfellG~S~~dFlk~N~----y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLK  219 (415)
T KOG0671|consen  166 ICIVFELLGLSTFDFLKENN----YIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLK  219 (415)
T ss_pred             eEEEEeccChhHHHHhccCC----ccccchHHHHHHHHHHHHHHHHHHhcceeecCCC
Confidence            99999999889999998833    5679999999999999   889999999999999

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.17  E-value=7.6e-12  Score=140.84  Aligned_cols=141  Identities=21%  Similarity=0.214  Sum_probs=115.5

Q ss_pred             eeecccccccCCceEEEe---eeec-----CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          409 FVSNTEIAKGSNGTVVYE---GIYE-----GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~---~~~~-----g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ..+.+.||+|+||.|++.   +...     ...||||.++..    ..+.+..|+..|.....||||+.++|+|...+.+
T Consensus       298 l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~  377 (609)
T KOG0200|consen  298 LKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPL  377 (609)
T ss_pred             ccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCce
Confidence            344569999999998773   2211     457999988754    2346778998888888999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcc-cC--Ccc-------cccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          477 YLSLERCT-CSLDDLIQTYS-DS--SCN-------SVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~-~~--~~~-------~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                      ++|+|||. |+|.++++.++ ..  ...       ..++..+...++.||   ++||+++++|||||-    |+..+...
T Consensus       378 ~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~  457 (609)
T KOG0200|consen  378 YVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKVI  457 (609)
T ss_pred             EEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCEE
Confidence            99999997 89999999865 00  011       238888999999999   999999999999998    88999889


Q ss_pred             chhhhhhhhcC
Q 042769          539 SPLLLSLMRLV  549 (549)
Q Consensus       539 ~~~l~~Lmrd~  549 (549)
                      ++..++|+||+
T Consensus       458 kIaDFGlar~~  468 (609)
T KOG0200|consen  458 KIADFGLARDH  468 (609)
T ss_pred             EEccccceecc
Confidence            99999999975

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.17  E-value=8.9e-12  Score=119.99  Aligned_cols=131  Identities=29%  Similarity=0.400  Sum_probs=105.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |.+.+.||.|++|.||.. ...+++.+|+|.+...    ....+.+|+..+... +|+|++++++++......++++|++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~-~~~~i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKL-KHPNIVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhC-CCCChhhheeeeecCCceEEEEecc
Confidence            456689999999998874 4445889999988754    344667788766555 9999999999999989999999999


Q ss_pred             cc-chhhhhhhcccCCcccc-cCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSV-FGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~-l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+ +|.+++..      ... +++..+..++.++   +.+||.++++|+||+    +++.++......+.++
T Consensus        80 ~~~~L~~~~~~------~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~  145 (225)
T smart00221       80 EGGDLFDYLRK------KGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLA  145 (225)
T ss_pred             CCCCHHHHHHh------cccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCcee
Confidence            86 99999987      223 7788888888888   889999999999999    7777776665555544

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.16  E-value=7.9e-12  Score=137.04  Aligned_cols=139  Identities=14%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             eeecccccccCCceEEEee-----------------eecCchhHHHHHHHHH---h--------------hhhHHHHHHH
Q 042769          409 FVSNTEIAKGSNGTVVYEG-----------------IYEGRPVAVKRLVRAL---H--------------DVAFKEIQNL  454 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-----------------~~~g~~VAVK~i~~~~---~--------------~~~~~Ei~~L  454 (549)
                      |.+.++||+|+||.||+..                 ...++.||||++....   .              +....|+..+
T Consensus       147 F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l  226 (507)
T PLN03224        147 FQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMC  226 (507)
T ss_pred             ceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHH
Confidence            9999999999999987631                 1235679999875321   0              1122344333


Q ss_pred             HhcCCCCC-----eeEEeeeccC--------cceEEEEecccc-cchhhhhhhcccCC------------------cccc
Q 042769          455 IASDQHPN-----IVRWYGVEND--------KDFVYLSLERCT-CSLDDLIQTYSDSS------------------CNSV  502 (549)
Q Consensus       455 ~~~l~HpN-----IVrl~g~~~~--------~~~~yLVmE~~~-GsL~~~L~~~~~~~------------------~~~~  502 (549)
                      .++ +|.+     +++++++|..        .+..+|||||+. |+|.++++......                  ....
T Consensus       227 ~~l-~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~  305 (507)
T PLN03224        227 AKI-KRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDK  305 (507)
T ss_pred             HHh-hcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccccc
Confidence            333 4544     4677777643        356899999997 69999987522100                  0112


Q ss_pred             cCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          503 FGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       503 l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +++..++.++.|+   |.|||+++|+|||||    |++.++.+++..+.+.++
T Consensus       306 ~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~  358 (507)
T PLN03224        306 RDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVD  358 (507)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccc
Confidence            3456677788888   889999999999999    788888888887777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=99.15  E-value=4.9e-11  Score=131.91  Aligned_cols=165  Identities=18%  Similarity=0.252  Sum_probs=106.6

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----hhhcCCCccccc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----YVKTAPHITEEG   74 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----~v~~sP~~~~dg   74 (549)
                      ++|+|..+.+....   +........+.+++..+.+|.++.|+.|||+|+ +|++.|.+.+.+     .+.++|++. +|
T Consensus        91 ~lW~~~~~~~~~~~---~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g  166 (527)
T TIGR03075        91 ELWKYDPKLPDDVI---PVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG  166 (527)
T ss_pred             eeeEecCCCCcccc---cccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC
Confidence            47888876542211   000000011235677777888889999999999 999999998753     477899999 88


Q ss_pred             ceeecce------eeEEEEEEccccceeeecCCCCCCcc-ccc------hhhhccccccc--ccchHHHHhhccCccccc
Q 042769           75 AVTLGSK------TTTVFVLEAKTGRLIRTYGSPHSSST-LQN------EEQKSASYKHD--KVNNEQLVKSGLTNTAEL  139 (549)
Q Consensus        75 ~v~~Gsk------~~~~~~vda~tG~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  139 (549)
                      .||+|+-      ++.++|+|++||+++|++.+-..... ...      ++-....-.++  +......|.+...++.  
T Consensus       167 ~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~--  244 (527)
T TIGR03075       167 KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE--  244 (527)
T ss_pred             EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC--
Confidence            9999964      68999999999999999988531100 000      00000000000  0012233434444443  


Q ss_pred             cccCceEEEEEccc-----c-----------eeecccCCCCCceeeeeeehh
Q 042769          140 QHKEPYLLFITRTD-----Y-----------TLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       140 ~~~~~~~v~i~r~d-----~-----------~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                          .++|||+...     +           .|.|+|++||+++|.|.....
T Consensus       245 ----~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~  292 (527)
T TIGR03075       245 ----TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPH  292 (527)
T ss_pred             ----CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCC
Confidence                3899999843     3           799999999999999977544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.15  E-value=4e-12  Score=125.06  Aligned_cols=124  Identities=16%  Similarity=0.237  Sum_probs=102.2

Q ss_pred             cCCccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeee-ccCcce
Q 042769          400 AQGRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGV-ENDKDF  475 (549)
Q Consensus       400 ~~~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~-~~~~~~  475 (549)
                      .....+.+.|.+.+.||+|.||.+.+ +++.+++.+++|.+.+.  ....+.+|+..-..+-.|.||+.-|++ |+..+.
T Consensus        17 l~kv~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~   96 (378)
T KOG1345|consen   17 LKKVDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDA   96 (378)
T ss_pred             ccccchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCce
Confidence            34445556699999999999999877 58888999999988764  244677898665556579999988765 788888


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      ..+++|||+ |+|.+-+..       .++.|....+++.|+   +.|||++++||||||
T Consensus        97 YvF~qE~aP~gdL~snv~~-------~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK  148 (378)
T KOG1345|consen   97 YVFVQEFAPRGDLRSNVEA-------AGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLK  148 (378)
T ss_pred             EEEeeccCccchhhhhcCc-------ccccHHHHHHHHHHHHHHHHHhhccchhhcccc
Confidence            999999998 899887755       457888889999998   889999999999999

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=99.15  E-value=3.5e-11  Score=127.53  Aligned_cols=118  Identities=21%  Similarity=0.326  Sum_probs=91.9

Q ss_pred             ccccc-ceeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCC
Q 042769           29 SELTN-SFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        29 ~~~~~-~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      |.+.. +.+++++.||.||++|. +|.++|.++.+. +.-.+|++..||+||+++.++++|+||+.||+.+|++..+.+ 
T Consensus       106 ~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-  184 (370)
T COG1520         106 PILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-  184 (370)
T ss_pred             ceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-
Confidence            55444 55999999999999999 999999999999 444444555599999999889999999999999999888641 


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc--cceeecccCCCCCceeeeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT--DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~--d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                        +....+.++                     ..   ..+.||++..  ++.++|+|+++|..+|+..+.
T Consensus       185 --~~~~~~~~~---------------------~~---~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~  228 (370)
T COG1520         185 --LSLSIYGSP---------------------AI---ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVS  228 (370)
T ss_pred             --cccccccCc---------------------ee---ecceEEEecCCCcceEEEEEccCCcEeeeeeee
Confidence              111111111                     11   2379999998  789999999999999995433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.15  E-value=1.4e-11  Score=121.10  Aligned_cols=116  Identities=21%  Similarity=0.371  Sum_probs=91.0

Q ss_pred             ccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeee-cCCCCCCcccc
Q 042769           32 TNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRT-YGSPHSSSTLQ  109 (549)
Q Consensus        32 ~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~-~~~~~~~~~~~  109 (549)
                      ..+.+|.++.++.||++|+ +|+..|.++.++.+...|.+. ++.||+++.++.++++|++||+++|+ .........+.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec-ccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            4555777789999999998 999999999999888989777 88899999999999999999999999 45532100000


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                                          .+  ..+...    .+.+|++..++.|+++|+++|+++|++.+..
T Consensus       114 --------------------~~--~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen  114 --------------------SS--SSPAVD----GDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             ------------------------SEEEEE----TTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             --------------------cc--cCceEe----cCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence                                00  011111    2689999999999999999999999998855

...

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=99.13  E-value=6.1e-11  Score=135.22  Aligned_cols=160  Identities=13%  Similarity=0.187  Sum_probs=107.2

Q ss_pred             CceeccCCCcccccccccee-----eee-----ccc--cccccccceeeecCCcchhhhccc-cccccCCcchhh-----
Q 042769            1 VSWTFGTGTPIYSSYQAPVQ-----ATV-----DQD--NASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----   62 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~-----~~~-----~~~--~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----   62 (549)
                      ++|+|..+.++.+.+|.-..     -+.     .++  .+|++....+|.++.|+.|||+|+ +|+..|.|..+.     
T Consensus       216 ~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~  295 (764)
T TIGR03074       216 EKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLT  295 (764)
T ss_pred             EEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeee
Confidence            47999998887654432110     000     000  125666777888999999999999 999999987643     


Q ss_pred             -----------hhhcCCCcccccceeecce----------eeEEEEEEccccceeeecCCCCCC-c-cccchhhhccccc
Q 042769           63 -----------YVKTAPHITEEGAVTLGSK----------TTTVFVLEAKTGRLIRTYGSPHSS-S-TLQNEEQKSASYK  119 (549)
Q Consensus        63 -----------~v~~sP~~~~dg~v~~Gsk----------~~~~~~vda~tG~~~~~~~~~~~~-~-~~~~~~~~~~~~~  119 (549)
                                 .+.++|+|. +|+||+|+.          .+.++|+|++||+++|++.+.... + ..+.++.-    .
T Consensus       296 ~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~----~  370 (764)
T TIGR03074       296 AGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETY----T  370 (764)
T ss_pred             cccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEe----c
Confidence                       257889999 999999964          689999999999999999875311 1 11111110    0


Q ss_pred             ccccchHHHHhhccCccccccccCceEEEEEc------------------ccceeecccCCCCCceeeeeeeh
Q 042769          120 HDKVNNEQLVKSGLTNTAELQHKEPYLLFITR------------------TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r------------------~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      .   +...-|.+...++.      .++||++.                  ....|.|+|++||+++|.+.+..
T Consensus       371 ~---gg~n~W~~~s~D~~------~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~  434 (764)
T TIGR03074       371 R---NTPNSWSVASYDEK------LGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH  434 (764)
T ss_pred             c---CCCCccCceEEcCC------CCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence            0   12222333333432      26888853                  24589999999999999997753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.12  E-value=2.8e-11  Score=113.85  Aligned_cols=127  Identities=31%  Similarity=0.490  Sum_probs=102.3

Q ss_pred             ccccCCceEEEe-eeecCchhHHHHHHHHHh----hhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cchh
Q 042769          415 IAKGSNGTVVYE-GIYEGRPVAVKRLVRALH----DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CSLD  488 (549)
Q Consensus       415 LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~----~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL~  488 (549)
                      ||+|.+|.||.. ...+++.+++|++.....    +.+.+|++.+..+ +|++|+++++++......+++||++. ++|.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL-NHPNIVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhc-CCCCeeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            689999998774 334589999998886533    5677898766555 99999999999999999999999998 5999


Q ss_pred             hhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCchhhhhhhh
Q 042769          489 DLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPSPLLLSLMR  547 (549)
Q Consensus       489 ~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~~~l~~Lmr  547 (549)
                      +++....     ..++...+..++.++   +++||+++++|+||+    +++. ++++....+.+++
T Consensus        80 ~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~  141 (215)
T cd00180          80 DLLKENE-----GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSK  141 (215)
T ss_pred             HHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence            9987621     357888888888888   889999999999999    6666 6776666665554

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.12  E-value=1.6e-12  Score=127.57  Aligned_cols=135  Identities=25%  Similarity=0.281  Sum_probs=102.8

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .+-...||.|+||+|++ .++.+|+.+|||+|+..    ...+++.|....++.-+.||||++||.+..++..||.||+|
T Consensus        66 Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELM  145 (361)
T KOG1006|consen   66 LQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELM  145 (361)
T ss_pred             HHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHH
Confidence            44457899999999877 68899999999988843    24467789888888879999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ceeEEEeecc----ccccCCCCchhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      .-||..+-+..- .-....++|..+-.+....   |.||- ..+|||||+|    |+|..|..++-.++
T Consensus       146 d~SlDklYk~vy-~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFG  213 (361)
T KOG1006|consen  146 DISLDKLYKRVY-SVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFG  213 (361)
T ss_pred             hhhHHHHHHHHH-HHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeeccc
Confidence            876654433210 0113456666655555444   77887 6799999999    89998887765544

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.11  E-value=1.9e-11  Score=122.73  Aligned_cols=134  Identities=28%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc---
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD---  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~---  474 (549)
                      .+..+|...+.+|.|+- .|+.+ +...++.||+|++...     ...++.+|+ .++..++|+||++++.+|.-..   
T Consensus        14 tv~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel-~l~~~v~~~nii~l~n~ftP~~~l~   91 (369)
T KOG0665|consen   14 TVPKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYREL-KLMKCVNHKNIISLLNVFTPQKTLE   91 (369)
T ss_pred             eeeeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhh-hhhhhhcccceeeeeeccCccccHH
Confidence            45566888999999988 45553 6778999999988754     344678999 4555669999999999987544   


Q ss_pred             ---eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          475 ---FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       475 ---~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                         ..|+|||+|.++|.+.+..        .+....+..++.|+   ++|||+.+|+|||||    ++..+..-++..+.
T Consensus        92 ~~~e~y~v~e~m~~nl~~vi~~--------elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg  163 (369)
T KOG0665|consen   92 EFQEVYLVMELMDANLCQVILM--------ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFG  163 (369)
T ss_pred             HHHhHHHHHHhhhhHHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccch
Confidence               4899999999999998864        36777888999998   789999999999999    77777777777777


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      |+|
T Consensus       164 ~ar  166 (369)
T KOG0665|consen  164 LAR  166 (369)
T ss_pred             hhc
Confidence            665

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.10  E-value=2.6e-11  Score=131.29  Aligned_cols=128  Identities=27%  Similarity=0.287  Sum_probs=100.9

Q ss_pred             eeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          406 GKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ...|.+...+|.|+|+.|-+ ....+++..|+|++.+. .....+|+..+....+||||+.+.+.+.+..+.|+|||.++
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~-~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR-ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheecccc-ccccccccchhhhhcCCCcceeecceecCCceeeeeehhcc
Confidence            44488888899999998766 47788999999999876 34556777666666699999999999999999999999998


Q ss_pred             c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc-ccCCCCchh
Q 042769          485 C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW-KADGHPSPL  541 (549)
Q Consensus       485 G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll-~~~G~p~~~  541 (549)
                      | -|.+.+..      ...+. ..+..+++|+   +.|||++|+||||||    |+ ++.|+-.+.
T Consensus       400 g~ell~ri~~------~~~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrlt  458 (612)
T KOG0603|consen  400 GGELLRRIRS------KPEFC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLT  458 (612)
T ss_pred             ccHHHHHHHh------cchhH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEE
Confidence            5 55555555      22233 6777888888   889999999999999    66 466654433

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.10  E-value=2e-11  Score=118.48  Aligned_cols=122  Identities=21%  Similarity=0.155  Sum_probs=99.0

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ..+++ |.+.++||.|+||.+|. .+...|.+||||.-... ...+...|......+.....|.+++.+.....+-.|||
T Consensus        12 iv~gk-y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   12 IVGGK-YKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             eeccc-eEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            34455 99999999999999998 58889999999965533 34466677755444434567888888888888889999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      |++..+|.+++..|.     ..++...++.++-|+   ++|+|.+++||||||
T Consensus        91 dLLGPsLEdLfnfC~-----R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIK  138 (341)
T KOG1163|consen   91 DLLGPSLEDLFNFCS-----RRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIK  138 (341)
T ss_pred             eccCccHHHHHHHHh-----hhhhHHhHHHHHHHHHHHHHHHHhhccccccCC
Confidence            999889888887743     568888888899998   889999999999999

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.06  E-value=2.3e-11  Score=135.72  Aligned_cols=137  Identities=15%  Similarity=0.087  Sum_probs=88.5

Q ss_pred             eeecccccccCCceEEEe-eeec----CchhHHHHHHHHHhh-hhHHHHHHHHhcCCCCCeeEEeee------ccCcceE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYE----GRPVAVKRLVRALHD-VAFKEIQNLIASDQHPNIVRWYGV------ENDKDFV  476 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~----g~~VAVK~i~~~~~~-~~~~Ei~~L~~~l~HpNIVrl~g~------~~~~~~~  476 (549)
                      |++.++||+|+||.||+. ...+    ++.||+|++...... ....|.  +... .+.+++.+...      .......
T Consensus       134 y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~--l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  210 (566)
T PLN03225        134 FVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNER--VRRA-CPNSCADFVYGFLEPVSSKKEDEY  210 (566)
T ss_pred             eEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHH--HHhh-chhhHHHHHHhhhcccccccCCce
Confidence            999999999999998884 4455    789999977542111 111111  1111 22222222211      2456679


Q ss_pred             EEEecccc-cchhhhhhhcccCC--------------cccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSS--------------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~--------------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      +|||||+. ++|.+++.......              ......+..+..++.|+   |+|||+++|+|||||    |++.
T Consensus       211 ~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~  290 (566)
T PLN03225        211 WLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSE  290 (566)
T ss_pred             EEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeC
Confidence            99999997 59999987521000              00011233456788888   889999999999999    7775


Q ss_pred             -CCCCchhhhhhhhc
Q 042769          535 -DGHPSPLLLSLMRL  548 (549)
Q Consensus       535 -~G~p~~~l~~Lmrd  548 (549)
                       ++..++.+++++++
T Consensus       291 ~~~~~KL~DFGlA~~  305 (566)
T PLN03225        291 GSGSFKIIDLGAAAD  305 (566)
T ss_pred             CCCcEEEEeCCCccc
Confidence             67888888888764

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.06  E-value=2.3e-11  Score=125.96  Aligned_cols=119  Identities=19%  Similarity=0.231  Sum_probs=100.5

Q ss_pred             ccceeeeeecccccccCCceEEEe-eee---cCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIY---EGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~---~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ..+.+.|...++||.|+|++||.. ...   .++.||+|.+... ...+...|++.|-.+..+.||+.+.+++..++...
T Consensus        32 p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~  111 (418)
T KOG1167|consen   32 PFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVA  111 (418)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeE
Confidence            345556888999999999998873 333   5789999988865 34567899988888889999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +||||++ .+..++...         ++...++.+++.+   |.++|.+||||||||
T Consensus       112 ivlp~~~H~~f~~l~~~---------l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiK  159 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRS---------LSLAEIRWYLRNLLKALAHLHKNGIVHRDIK  159 (418)
T ss_pred             EEecccCccCHHHHHhc---------CCHHHHHHHHHHHHHHhhhhhccCccccCCC
Confidence            9999998 478887766         6677888888877   899999999999999

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.02  E-value=1.1e-10  Score=117.93  Aligned_cols=135  Identities=19%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             CCccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHH-HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVR-ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~-~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      ....+|-.|.++++||+|+||.++. .++.+++.||||.-.. +...++..|.....-+...++|...|.+-....+-.|
T Consensus        22 ~~~~VG~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiL  101 (449)
T KOG1165|consen   22 GVLMVGPHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNIL  101 (449)
T ss_pred             CceEecccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhh
Confidence            3456787899999999999997666 6889999999995543 3345677888776556578999999999888888889


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |||++.-+|.++..-|.     ..|+...+..++.|+   ++|+|++.+|.||||    |+..-|.+..
T Consensus       102 VidLLGPSLEDLFD~Cg-----R~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~  165 (449)
T KOG1165|consen  102 VIDLLGPSLEDLFDLCG-----RRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDA  165 (449)
T ss_pred             hhhhhCcCHHHHHHHhc-----CcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCC
Confidence            99999878877776543     579999999999999   889999999999999    7766555543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.02  E-value=2.8e-10  Score=111.03  Aligned_cols=156  Identities=12%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeec
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLG   79 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~G   79 (549)
                      ++|+..++.=|-.|   |-+.-.+      . ...++.||..+.+-|+|+ +|+++|.--.+.-+..||++. ..-|.+|
T Consensus         1 ~rW~vd~~kCVDas---pLVV~~d------s-kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv-gdfVV~G   69 (354)
T KOG4649|consen    1 MRWAVDLRKCVDAS---PLVVCND------S-KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV-GDFVVLG   69 (354)
T ss_pred             CceeccchhhccCC---cEEEecC------C-ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE-CCEEEEE
Confidence            57999998888877   3322111      1 234688999999999999 999999999999999999999 6669999


Q ss_pred             ceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecc
Q 042769           80 SKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSF  159 (549)
Q Consensus        80 sk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~  159 (549)
                      .+.+-+|.++.+||+.+|.|...+.        -...               +..++      +.++||+|+.|+++||+
T Consensus        70 Cy~g~lYfl~~~tGs~~w~f~~~~~--------vk~~---------------a~~d~------~~glIycgshd~~~yal  120 (354)
T KOG4649|consen   70 CYSGGLYFLCVKTGSQIWNFVILET--------VKVR---------------AQCDF------DGGLIYCGSHDGNFYAL  120 (354)
T ss_pred             EccCcEEEEEecchhheeeeeehhh--------hccc---------------eEEcC------CCceEEEecCCCcEEEe
Confidence            9999999999999999999988641        1110               01111      23899999999999999


Q ss_pred             cCCCCCceeeeeeehhhhhhhccccCCcccccccccc
Q 042769          160 EPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTS  196 (549)
Q Consensus       160 d~~~g~~~Wn~~~~~~~a~~~~~~~~~~~~~~~~~~~  196 (549)
                      |+++-.-.|+-+-+.-.-+.|+++.-..++++..-++
T Consensus       121 D~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G  157 (354)
T KOG4649|consen  121 DPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAG  157 (354)
T ss_pred             cccccceEEecccCCceeccceecCCCceEEEEeccc
Confidence            9999999999999999999999987444444444333

>smart00090 RIO RIO-like kinase

Probab=99.01  E-value=4.9e-11  Score=118.84  Aligned_cols=128  Identities=20%  Similarity=0.053  Sum_probs=87.8

Q ss_pred             eeeeeecccccccCCceEEEee--eecCchhHHHHHHHHH---------------------------hhhhHHHHHHHHh
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEG--IYEGRPVAVKRLVRAL---------------------------HDVAFKEIQNLIA  456 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~--~~~g~~VAVK~i~~~~---------------------------~~~~~~Ei~~L~~  456 (549)
                      |..|.+.+.||+|+||.||.+.  ..+|+.||||++....                           .....+|+..+.+
T Consensus        27 ~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~  106 (237)
T smart00090       27 GILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQR  106 (237)
T ss_pred             CchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            4458888999999999988864  6789999999765321                           0123468877766


Q ss_pred             cCCC--CCeeEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee-EEEeec
Q 042769          457 SDQH--PNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK-VIIRDL  529 (549)
Q Consensus       457 ~l~H--pNIVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~-IIHRDL  529 (549)
                      + .+  ..+.++++.    ...+|||||++| +|..++..      ...+....+..++.|+   +.+||..+ ++||||
T Consensus       107 L-~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~------~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Di  175 (237)
T smart00090      107 L-YEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLK------DVEPEEEEEFELYDDILEEMRKLYKEGELVHGDL  175 (237)
T ss_pred             H-HhcCCCCCeeeEe----cCceEEEEEecCCcccccccc------cCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCC
Confidence            6 33  334445543    234899999997 66655422      2334555667788888   88999999 999999


Q ss_pred             c----ccccCCCCchhhhhh
Q 042769          530 S----LWKADGHPSPLLLSL  545 (549)
Q Consensus       530 K----Ll~~~G~p~~~l~~L  545 (549)
                      |    |++ ++.+....+.+
T Consensus       176 kp~NIli~-~~~i~LiDFg~  194 (237)
T smart00090      176 SEYNILVH-DGKVVIIDVSQ  194 (237)
T ss_pred             ChhhEEEE-CCCEEEEEChh
Confidence            9    666 66655544443

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.01  E-value=8e-11  Score=116.27  Aligned_cols=120  Identities=9%  Similarity=-0.012  Sum_probs=87.7

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHH------hhh------hHHHHHHHHhcCCCCCeeEEeeecc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL------HDV------AFKEIQNLIASDQHPNIVRWYGVEN  471 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~------~~~------~~~Ei~~L~~~l~HpNIVrl~g~~~  471 (549)
                      .+...|...++||.|+||.|+.... +++.+|+|.+.+..      ...      ..+|++.+.++ .||+|..+..++.
T Consensus        28 ~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL-~~~GI~~~~d~~~  105 (232)
T PRK10359         28 FLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV-RSEGLASLNDFYL  105 (232)
T ss_pred             HhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH-HHCCCCcceEeee
Confidence            3455599999999999999988544 57789999887531      111      35777666666 9999999988755


Q ss_pred             Cc--------ceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhheeecccceeEEEeecc----ccccCC
Q 042769          472 DK--------DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       472 ~~--------~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      ..        ...+|+|||++| +|.++..          +++. ...-+.+.|..||+.|++|||+|    |++.+|
T Consensus       106 ~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~----------~~~~-~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g  172 (232)
T PRK10359        106 LAERKTLRYAHTYIMLIEYIEGVELNDMPE----------ISED-VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG  172 (232)
T ss_pred             ecccccccccCCeEEEEEEECCccHHHhhh----------ccHH-HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC
Confidence            33        358999999998 8877632          2222 22333344899999999999999    677776

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.00  E-value=1.6e-10  Score=112.32  Aligned_cols=122  Identities=20%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             eecccccccCCceEEEeeeecCchhHHHHHHHHH-------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          410 VSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       410 ~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .....|++|+||+|++.+. .+++++.+.+....       ...+.+|++.|.++-.|++|++++++    ...|++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEee
Confidence            3456899999999987554 66777766554321       12467899888877567889999886    346999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhheeecccceeEEEeec-c----ccccCCCCchhhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL-S----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~IIHRDL-K----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.| +|.+.+..       ..   .....-+.++|.+||++||+|||| |    |++.+|++.+.++.++
T Consensus        80 I~G~~L~~~~~~-------~~---~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A  139 (218)
T PRK12274         80 LAGAAMYQRPPR-------GD---LAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLA  139 (218)
T ss_pred             ecCccHHhhhhh-------hh---HHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCc
Confidence            987 67544321       11   111122233488999999999999 6    7888898877665543

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.94  E-value=7.8e-11  Score=116.17  Aligned_cols=131  Identities=18%  Similarity=0.244  Sum_probs=102.2

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .+....||.|+.|.|+. +.+.+|..+|||.+.+.    ...+++..+..+...-++|.||+.+|+|..+..++|.||.|
T Consensus        94 l~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelM  173 (391)
T KOG0983|consen   94 LENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELM  173 (391)
T ss_pred             hhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHH
Confidence            45567899999999877 57788999999998864    34466777766666657899999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ceeEEEeecc----ccccCCCCchhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ..-+..++++     ..++++|..+-.+...+   |.||. .++|||||+|    |+|..|+.+.-.++
T Consensus       174 s~C~ekLlkr-----ik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFG  237 (391)
T KOG0983|consen  174 STCAEKLLKR-----IKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFG  237 (391)
T ss_pred             HHHHHHHHHH-----hcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeeccc
Confidence            7545555544     13457777776666655   77887 5789999999    99999987776554

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=98.93  E-value=2.2e-10  Score=110.97  Aligned_cols=121  Identities=34%  Similarity=0.432  Sum_probs=96.3

Q ss_pred             CCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc-chhhhhh
Q 042769          419 SNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQ  492 (549)
Q Consensus       419 ~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~  492 (549)
                      +||.||.. ...+|+.+|+|++....    .+.+.+|++.+..+ +|+||+++++++......++++|++.+ +|.+++.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l-~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKL-KHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhC-CCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            47887774 44468899999887432    35667888666555 999999999999998999999999986 9999987


Q ss_pred             hcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          493 TYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       493 ~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .      ...++...+..++.++   +.|||+.+++|+||+    +++.+|......+.++
T Consensus        80 ~------~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~  134 (244)
T smart00220       80 K------RGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLA  134 (244)
T ss_pred             h------ccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccce
Confidence            6      2237888888888888   889999999999999    7777777666655544

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.91  E-value=1.5e-09  Score=111.60  Aligned_cols=141  Identities=15%  Similarity=0.139  Sum_probs=104.9

Q ss_pred             eeeecccccccCCceEEEe---e--e-ecCchhHHHHHHHHHh----hhhHHHHHHHHhcCCCCCeeEEeeeccCc-ceE
Q 042769          408 LFVSNTEIAKGSNGTVVYE---G--I-YEGRPVAVKRLVRALH----DVAFKEIQNLIASDQHPNIVRWYGVENDK-DFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~---~--~-~~g~~VAVK~i~~~~~----~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-~~~  476 (549)
                      ++++..++-+|.||.||+.   .  . .+.+.|-+|.++...+    ..++.|-..+ .-..|||+..+.+++... ...
T Consensus       285 Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~ll-y~~sH~nll~V~~V~ie~~~~P  363 (563)
T KOG1024|consen  285 RVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLL-YGASHPNLLSVLGVSIEDYATP  363 (563)
T ss_pred             heechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHH-hcCcCCCccceeEEEeeccCcc
Confidence            3777889999999998773   1  1 2246788898886532    2455676444 444899999999987654 457


Q ss_pred             EEEecccc-cchhhhhhhcccCC--cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSS--CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~--~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.++.+++ |+|..|++.|+...  ..+.++..+...++.|+   ++|||..+|||.||-    ++|..-+.++-+-.|.
T Consensus       364 ~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLS  443 (563)
T KOG1024|consen  364 FVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALS  443 (563)
T ss_pred             eEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEeccchhc
Confidence            78888887 89999999766332  33457777788888898   899999999999998    7887766666677777


Q ss_pred             hcC
Q 042769          547 RLV  549 (549)
Q Consensus       547 rd~  549 (549)
                      ||.
T Consensus       444 RDL  446 (563)
T KOG1024|consen  444 RDL  446 (563)
T ss_pred             ccc
Confidence            773

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.90  E-value=3.8e-10  Score=109.29  Aligned_cols=120  Identities=16%  Similarity=0.148  Sum_probs=84.6

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHH-----------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.||+|++|.||.. ...|..+++|.....           ......+|+..+..+ .|++|.....++......+++||
T Consensus         2 ~~l~~G~~~~vy~~-~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLG-DFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRA-RKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEE-eeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCeEEEEeCCCCEEEEE
Confidence            57999999987664 347788888853311           122456788666554 78887766666666677899999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      |++| +|.+++...      .   . ....++.++   |.+||+.+++|||++    |++ ++.+...++.+
T Consensus        80 ~~~G~~L~~~~~~~------~---~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~  140 (211)
T PRK14879         80 YIEGEPLKDLINSN------G---M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGL  140 (211)
T ss_pred             EeCCcCHHHHHHhc------c---H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCc
Confidence            9986 999888651      1   1 555666666   889999999999999    565 66655555443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.88  E-value=6.8e-10  Score=115.48  Aligned_cols=119  Identities=23%  Similarity=0.230  Sum_probs=94.3

Q ss_pred             eeeecccccccCCceEEEe-eeec-CchhHHHHHHHHH---hhhhHHHHHHHHhcC---CCCCeeEEeeec-cCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYE-GRPVAVKRLVRAL---HDVAFKEIQNLIASD---QHPNIVRWYGVE-NDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~-g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l---~HpNIVrl~g~~-~~~~~~yL  478 (549)
                      .|.+.+.||+|+||.||.. ...+ ...+|+|......   ...+..|...+..+.   ..+++.++++.. ....+-||
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            4999999999999998884 3333 3578888655431   114667776666653   236889999888 58889999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      ||+++..+|.++...+.    .+.++...+.+++.|+   |++||+.|++|||||
T Consensus        99 VM~l~G~sL~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiK  149 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNP----PGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIK  149 (322)
T ss_pred             EEeccCccHHHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcC
Confidence            99999889999876632    4679999999999999   889999999999999

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.87  E-value=2.4e-10  Score=120.85  Aligned_cols=130  Identities=18%  Similarity=0.224  Sum_probs=107.7

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCC-----CCCeeEEeeeccCcc
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQ-----HPNIVRWYGVENDKD  474 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~-----HpNIVrl~g~~~~~~  474 (549)
                      ..+..+|.+....|+|-|++|+.+ +...|+.||||+|...  .....++|+++|.++..     --|+++|+..|...+
T Consensus       428 E~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hkn  507 (752)
T KOG0670|consen  428 ELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKN  507 (752)
T ss_pred             hhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcc
Confidence            445566999999999999999884 7777899999999854  44567789988766531     237899999999999


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      ++|||+|-+.-+|.+.|++++   .+-+|....++.|+.|+   |..|-.++|+|.|||    |+++.
T Consensus       508 HLClVFE~LslNLRevLKKyG---~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~  572 (752)
T KOG0670|consen  508 HLCLVFEPLSLNLREVLKKYG---RNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNES  572 (752)
T ss_pred             eeEEEehhhhchHHHHHHHhC---cccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccC
Confidence            999999999999999999865   35678889999999999   778999999999999    55543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.86  E-value=9.9e-10  Score=107.94  Aligned_cols=100  Identities=19%  Similarity=0.319  Sum_probs=77.6

Q ss_pred             Ccchhhhccc-cccccCCcchhhhhhcCC--CcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhccc
Q 042769           41 EDWGLYAHGL-LGRMKLPQSIDDYVKTAP--HITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSAS  117 (549)
Q Consensus        41 ~d~~ly~~~~-~g~~~~~~~~~~~v~~sP--~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~  117 (549)
                      |+|.|+++|+ +|++.|.+.+++-...-+  .+..+|.||+++.++.+|++|++||+++|++..++...           
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------   69 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-----------   69 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-----------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-----------
Confidence            5899999999 999999998744232222  23249999999999999999999999999998854100           


Q ss_pred             ccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                                      ..+..    ..+.||++..|+.|+++|.++|+++|.+.
T Consensus        70 ----------------~~~~~----~~~~v~v~~~~~~l~~~d~~tG~~~W~~~  103 (238)
T PF13360_consen   70 ----------------GAPVV----DGGRVYVGTSDGSLYALDAKTGKVLWSIY  103 (238)
T ss_dssp             ----------------SGEEE----ETTEEEEEETTSEEEEEETTTSCEEEEEE
T ss_pred             ----------------ceeee----cccccccccceeeeEecccCCcceeeeec
Confidence                            01111    12789999999999999999999999963

...

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.83  E-value=7.1e-10  Score=106.49  Aligned_cols=117  Identities=18%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             cccccCCceEEEeeeecCchhHHHHHHHH-----------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       414 ~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .||+|+||.||.. ..+|..+++|.....           ...+..+|+..+..+ .|+++.....++......+++|||
T Consensus         1 ~ig~G~~~~vy~~-~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLG-DFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRA-RKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEe-ecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEECCCCEEEEEE
Confidence            4899999987664 367888888864321           123455788666554 666544333333445567899999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++| +|.+++..      ...       .++.|+   |.+||+.+++|||++    |++ ++.+...++.++
T Consensus        79 ~~g~~l~~~~~~------~~~-------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a  136 (199)
T TIGR03724        79 IEGKPLKDVIEE------GND-------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLG  136 (199)
T ss_pred             ECCccHHHHHhh------cHH-------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCC
Confidence            986 89888755      111       444444   889999999999999    565 666665555443

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.83  E-value=1.5e-09  Score=120.57  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHH----------HH-HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRL----------VR-ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i----------~~-~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      |...+.||+|+||.||+ +...++.+++|+.          .. ...+...+|+..+..+ +|++|+....++......+
T Consensus       335 ~~~~~~iG~G~~g~Vy~-~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~p~~~~~~~~~~~  412 (535)
T PRK09605        335 KIPDHLIGKGAEADIKK-GEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEA-RRAGVPTPVIYDVDPEEKT  412 (535)
T ss_pred             cCccceeccCCcEEEEE-EeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhh-cccCCCeeEEEEEeCCCCE
Confidence            45578999999999776 3344444444321          11 0123466788666554 9999988777777777789


Q ss_pred             EEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||||++| +|.+++..              ...++.|+   |.|||+.+++|||||    |+ .++.+...++.+.+
T Consensus       413 lv~E~~~g~~L~~~l~~--------------~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~  475 (535)
T PRK09605        413 IVMEYIGGKDLKDVLEG--------------NPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGK  475 (535)
T ss_pred             EEEEecCCCcHHHHHHH--------------HHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccc
Confidence            99999985 99888753              23445555   899999999999999    55 67777777666654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.81  E-value=4.4e-10  Score=108.41  Aligned_cols=122  Identities=19%  Similarity=0.065  Sum_probs=84.5

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH-------------------------hhhhHHHHHHHHhcCCCC--
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-------------------------HDVAFKEIQNLIASDQHP--  461 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-------------------------~~~~~~Ei~~L~~~l~Hp--  461 (549)
                      |.+.+.||+|+||.||.....+|+.||||++....                         .....+|+..+.++ .|+  
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKAL-YEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHH-HHcCC
Confidence            67778999999999887655579999999533210                         11245677555554 555  


Q ss_pred             CeeEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc
Q 042769          462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK  533 (549)
Q Consensus       462 NIVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~  533 (549)
                      .+++.++.    ...+++|||++| +|..+...            .....++.++   +.++|+.+|+|||||    |++
T Consensus        96 ~v~~~~~~----~~~~lv~e~~~g~~L~~~~~~------------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~  159 (198)
T cd05144          96 PVPKPIDW----NRHAVVMEYIDGVELYRVRVL------------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVD  159 (198)
T ss_pred             CCCceeec----CCceEEEEEeCCcchhhcccc------------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEc
Confidence            44455443    345899999986 77654321            2233444555   789999999999999    788


Q ss_pred             cCCCCchhhhhhhh
Q 042769          534 ADGHPSPLLLSLMR  547 (549)
Q Consensus       534 ~~G~p~~~l~~Lmr  547 (549)
                      .++.+.+..+.+|+
T Consensus       160 ~~~~~~liDfg~~~  173 (198)
T cd05144         160 DDEKIYIIDWPQMV  173 (198)
T ss_pred             CCCcEEEEECCccc
Confidence            89989888887774

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.81  E-value=5.6e-09  Score=102.06  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=116.0

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccc-cceee
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEE-GAVTL   78 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~d-g~v~~   78 (549)
                      ++|.---|..|.+|              +.+-.+++..|-..|.||.++- +|.+-|.|.+.+-|...|....| |.+|.
T Consensus        45 ~~We~ilg~RiE~s--------------a~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIyc  110 (354)
T KOG4649|consen   45 LIWEAILGVRIECS--------------AIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYC  110 (354)
T ss_pred             EEeehhhCceeeee--------------eEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEE
Confidence            47888889999999              7788888777779999999999 99999999999999999988766 58999


Q ss_pred             cceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeec
Q 042769           79 GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQS  158 (549)
Q Consensus        79 Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a  158 (549)
                      ||.|+++||+|++|-.-+|+-+-++..-                      ++|. +++.      ++-||+..+.+.|-|
T Consensus       111 gshd~~~yalD~~~~~cVykskcgG~~f----------------------~sP~-i~~g------~~sly~a~t~G~vla  161 (354)
T KOG4649|consen  111 GSHDGNFYALDPKTYGCVYKSKCGGGTF----------------------VSPV-IAPG------DGSLYAAITAGAVLA  161 (354)
T ss_pred             ecCCCcEEEecccccceEEecccCCcee----------------------ccce-ecCC------CceEEEEeccceEEE
Confidence            9999999999999999999977665210                      1111 1211      278999999999999


Q ss_pred             ccCCCC--Cceeeeeeehhhhhh-hcccc
Q 042769          159 FEPNSD--NVSWSMTVAEIGYAF-LCQDF  184 (549)
Q Consensus       159 ~d~~~g--~~~Wn~~~~~~~a~~-~~~~~  184 (549)
                      +.++++  .+.|.++.+.-.-++ +|...
T Consensus       162 vt~~~~~~~~~w~~~~~~PiF~splcv~~  190 (354)
T KOG4649|consen  162 VTKNPYSSTEFWAATRFGPIFASPLCVGS  190 (354)
T ss_pred             EccCCCCcceehhhhcCCccccCceeccc
Confidence            999999  999999988776555 66653

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=1.7e-09  Score=124.47  Aligned_cols=127  Identities=21%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             cCcCCccceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhh--HHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          398 GGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVA--FKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       398 ~~~~~~~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~--~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ...+...-+..|.+.+.||+|+||+||++...+|+.||+|.=++.....+  ..++..-++..--+.|.++..++...+.
T Consensus       689 ~~~~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~  768 (974)
T KOG1166|consen  689 PNTEFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNA  768 (974)
T ss_pred             ccceeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCc
Confidence            33444555677999999999999999996555599999997665432211  1122110111123456677777777888


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      -+||+||.+ |+|.+++..      .+.+++..+..+..|+   +++||.++|||+|||
T Consensus       769 S~lv~ey~~~Gtlld~~N~------~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiK  821 (974)
T KOG1166|consen  769 SVLVSEYSPYGTLLDLINT------NKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIK  821 (974)
T ss_pred             ceeeeeccccccHHHhhcc------CCCCCchhhhHHHHHHHHHHHHHHhcceecccCC
Confidence            899999998 899999985      6678888899998888   889999999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.59  E-value=7.6e-09  Score=98.22  Aligned_cols=124  Identities=19%  Similarity=0.113  Sum_probs=78.8

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHHh-----hh----------------------hHHHHHHHHhcCCC-CCe
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH-----DV----------------------AFKEIQNLIASDQH-PNI  463 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~-----~~----------------------~~~Ei~~L~~~l~H-pNI  463 (549)
                      .+.||+|+||.||.+...+|+.||||++.....     ..                      ...|...+.....+ ..+
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            468999999999886445799999996653210     00                      12344333333222 234


Q ss_pred             eEEeeeccCcceEEEEeccccc-chh-hhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccc
Q 042769          464 VRWYGVENDKDFVYLSLERCTC-SLD-DLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWK  533 (549)
Q Consensus       464 Vrl~g~~~~~~~~yLVmE~~~G-sL~-~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~  533 (549)
                      .+.+++.    ..+++|||++| .+. ..+....       . ...+..++.++   +.++|. .+|+|||||    +++
T Consensus        82 ~~~~~~~----~~~lv~e~~~g~~~~~~~l~~~~-------~-~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~  149 (187)
T cd05119          82 PKPIDLN----RHVLVMEFIGGDGIPAPRLKDVR-------L-LEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD  149 (187)
T ss_pred             CceEecC----CCEEEEEEeCCCCccChhhhhhh-------h-cccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE
Confidence            4444432    35899999986 332 2232210       1 15566777777   789998 999999999    666


Q ss_pred             cCCCCchhhhhhhhc
Q 042769          534 ADGHPSPLLLSLMRL  548 (549)
Q Consensus       534 ~~G~p~~~l~~Lmrd  548 (549)
                       ++.+....+.+|+.
T Consensus       150 -~~~~~liDfg~a~~  163 (187)
T cd05119         150 -DGKVYIIDVPQAVE  163 (187)
T ss_pred             -CCcEEEEECccccc
Confidence             88888888877764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.59  E-value=3.6e-08  Score=97.65  Aligned_cols=131  Identities=29%  Similarity=0.381  Sum_probs=95.6

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCC-CeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHP-NIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~Hp-NIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.+...||.|+||.||.....  ..+|+|.+....      ...+.+|+..+..+ .|+ +|+++++++......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASL-NHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHc-cCCcceeeEEEEEecCCEEEEEEe
Confidence            567789999999887664322  667777666432      33466777655555 666 89999999987777899999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLSL  545 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~L  545 (549)
                      ++.| +|.+++......   ..+.......++.|+   +.|+|..+++|||+|    |++.++ ......+.+
T Consensus        79 ~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~  148 (384)
T COG0515          79 YVDGGSLEDLLKKIGRK---GPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGL  148 (384)
T ss_pred             cCCCCcHHHHHHhcccc---cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCc
Confidence            9985 888777652100   268888999999999   679999999999999    666666 344444443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.56  E-value=1.3e-08  Score=101.49  Aligned_cols=93  Identities=20%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHhcCCCCCe--eEEeeeccCc-ce---EEEEeccccc--chhhhhhhcccCCcccccCchhhhHHhhhee
Q 042769          445 DVAFKEIQNLIASDQHPNI--VRWYGVENDK-DF---VYLSLERCTC--SLDDLIQTYSDSSCNSVFGEDQATRAMIEYK  516 (549)
Q Consensus       445 ~~~~~Ei~~L~~~l~HpNI--Vrl~g~~~~~-~~---~yLVmE~~~G--sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL  516 (549)
                      ..+.+|+..+..+ +|++|  ++.+++.... ..   .++|||+++|  +|.+++..       ..+++..... +.+.|
T Consensus        85 ~r~~rE~~ll~~L-~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~-------~~l~~~~~~~-i~~~l  155 (239)
T PRK01723         85 TRAFAEFRLLAQL-YEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQE-------APLSEEQWQA-IGQLI  155 (239)
T ss_pred             hHHHHHHHHHHHH-HhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhc-------CCCCHHHHHH-HHHHH
Confidence            3567888665554 77664  6677664332 22   3599999985  88888754       2344443222 23348


Q ss_pred             ecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          517 LRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       517 ~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+||++||+|||||    |++.+|.+.+.++..|
T Consensus       156 ~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~  189 (239)
T PRK01723        156 ARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRG  189 (239)
T ss_pred             HHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCc
Confidence            99999999999999    7888887666666654

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=1.6e-07  Score=101.30  Aligned_cols=157  Identities=12%  Similarity=0.160  Sum_probs=104.7

Q ss_pred             ceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhhhh---------------
Q 042769            2 SWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVK---------------   65 (549)
Q Consensus         2 ~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~---------------   65 (549)
                      -|+|+||+-=-+-    -....+.++-|-...+.+|.|.--..+||+|+ +|++||+|....--.               
T Consensus       187 AWty~TGD~k~~~----d~~e~t~e~tPLkvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~  262 (773)
T COG4993         187 AWTYRTGDVKQPE----DPGETTNEVTPLKVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGA  262 (773)
T ss_pred             eEEEecCcccCCC----CcccccccccceEECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceeccc
Confidence            4999999832211    11111223347777888899989999999999 999999998743222               


Q ss_pred             -----cCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCcccccc
Q 042769           66 -----TAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQ  140 (549)
Q Consensus        66 -----~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (549)
                           .|||-.   .||++--|.++.|+||+||+..|+|...++.+...+=.....++.            ..++++++.
T Consensus       263 a~a~~k~pc~~---rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y------------~~tS~p~~~  327 (773)
T COG4993         263 AKADAKSPCPR---RIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLY------------YGTSPPEFG  327 (773)
T ss_pred             ccccccCCCce---eEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeE------------eecCCCccc
Confidence                 245444   499999999999999999999999998774432221000100000            123444441


Q ss_pred             ccCceEEEEEc----------ccceeecccCCCCCceeeeeeehhhhhhh
Q 042769          141 HKEPYLLFITR----------TDYTLQSFEPNSDNVSWSMTVAEIGYAFL  180 (549)
Q Consensus       141 ~~~~~~v~i~r----------~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~  180 (549)
                         ...++|++          .-+.++++|-.+|++.|++..+.-.-..+
T Consensus       328 ---~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p  374 (773)
T COG4993         328 ---VKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAP  374 (773)
T ss_pred             ---ceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCC
Confidence               24455553          34678999999999999999987764443

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.43  E-value=5.9e-08  Score=86.96  Aligned_cols=124  Identities=13%  Similarity=0.092  Sum_probs=81.4

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHH-hhhhHHHHHHHHhcCCC-CCeeEEeeeccCcceEEEEeccccc-chh
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-HDVAFKEIQNLIASDQH-PNIVRWYGVENDKDFVYLSLERCTC-SLD  488 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-~~~~~~Ei~~L~~~l~H-pNIVrl~g~~~~~~~~yLVmE~~~G-sL~  488 (549)
                      .+.||+|.++.||.... .+..+++|...... .....+|+..+..+-++ .++++++.++...+..+++|||+.| .+.
T Consensus         3 ~~~i~~g~~~~v~~~~~-~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~   81 (155)
T cd05120           3 IKLLKGGLTNRVYLLGT-KDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLD   81 (155)
T ss_pred             ceecccccccceEEEEe-cCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecc
Confidence            46799999998776433 34778888776432 23566788666555333 6899999988888889999999986 554


Q ss_pred             hhhhhcccCCcccccCchhhhHHhhheeecccc---eeEEEeecc----ccccCCCCchhhhhhh
Q 042769          489 DLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDS---VKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       489 ~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~---~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+ ..         .........+.+.+.+||.   .+++|+|++    |++..+......+.++
T Consensus        82 ~~-~~---------~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~  136 (155)
T cd05120          82 EV-SE---------EEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYA  136 (155)
T ss_pred             cC-CH---------HHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccc
Confidence            33 11         0111122223333778886   589999999    6666566655555444

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.31  E-value=1.6e-07  Score=101.83  Aligned_cols=131  Identities=17%  Similarity=0.088  Sum_probs=80.2

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHHHHHhh-------------------------------------------hhH
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHD-------------------------------------------VAF  448 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~-------------------------------------------~~~  448 (549)
                      .+.||.|++|.||.+...+|+.||||+..+...+                                           .+.
T Consensus       122 ~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       122 EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            3579999999999887778999999965431000                                           122


Q ss_pred             HHHHHHHh---cCCCCCeeEEeeecc-CcceEEEEeccccc-chhhhhhhcccCCcccccCchhhh-HHhhheeecccce
Q 042769          449 KEIQNLIA---SDQHPNIVRWYGVEN-DKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQAT-RAMIEYKLRLDSV  522 (549)
Q Consensus       449 ~Ei~~L~~---~l~HpNIVrl~g~~~-~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~-~i~~qiL~yLH~~  522 (549)
                      +|..++..   ..+|.+-+.+-.++. .....+|||||++| +|.++.....     .......+. .++..++..+|..
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~-----~~~~~~~ia~~~~~~~l~ql~~~  276 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDE-----AGLDRKALAENLARSFLNQVLRD  276 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHh-----cCCCHHHHHHHHHHHHHHHHHhC
Confidence            33333222   223333333333332 23457899999987 8888765311     111112222 2222236778999


Q ss_pred             eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          523 KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       523 ~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++|+|++    +++.+|.....++++++
T Consensus       277 g~~H~D~hPgNilv~~~g~i~liDfG~~~  305 (437)
T TIGR01982       277 GFFHADLHPGNIFVLKDGKIIALDFGIVG  305 (437)
T ss_pred             CceeCCCCcccEEECCCCcEEEEeCCCee
Confidence            99999999    78888888777777665

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=98.19  E-value=4.1e-07  Score=64.75  Aligned_cols=40  Identities=20%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             ccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccc
Q 042769           52 GRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKT   92 (549)
Q Consensus        52 g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~t   92 (549)
                      |+++|.++++..+.++|++. ||.||+|+.++++||+|++|
T Consensus         1 G~~~W~~~~~~~~~~~~~v~-~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen    1 GKVLWSYDTGGPIWSSPAVA-GGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             S-EEEEEE-SS---S--EEC-TSEEEEE-TTSEEEEEETT-
T ss_pred             CceeEEEECCCCcCcCCEEE-CCEEEEEcCCCEEEEEeCCC
Confidence            68899999999999999999 99999999999999999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.08  E-value=4.6e-07  Score=105.49  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=58.3

Q ss_pred             CC-CCeeEEeeec-------cCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEe
Q 042769          459 QH-PNIVRWYGVE-------NDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIR  527 (549)
Q Consensus       459 ~H-pNIVrl~g~~-------~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHR  527 (549)
                      +| +||.++++.|       ...+.++++||++.++|.++|..     ....+++..++.++.||   |.|||+++||||
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~-----~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHr  104 (793)
T PLN00181         30 SHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDN-----PDRSVDAFECFHVFRQIVEIVNAAHSQGIVVH  104 (793)
T ss_pred             hHHHHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhc-----ccccccHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence            55 5777777776       33346788999998999999975     13458999999999999   889999999999


Q ss_pred             ecc----ccccCC
Q 042769          528 DLS----LWKADG  536 (549)
Q Consensus       528 DLK----Ll~~~G  536 (549)
                      |||    |++..|
T Consensus       105 DlKP~NiLl~~~~  117 (793)
T PLN00181        105 NVRPSCFVMSSFN  117 (793)
T ss_pred             cCCchhEEEcccC
Confidence            999    665433

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.08  E-value=5.2e-07  Score=98.39  Aligned_cols=128  Identities=22%  Similarity=0.205  Sum_probs=99.1

Q ss_pred             cccccCCceEEEe----eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          414 EIAKGSNGTVVYE----GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       414 ~LG~G~fG~V~~~----~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ++|+|+||.|++.    +...|..+|+|.+++..     ......|-..+....+||.+|++...++.+...++++++..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            4799999998763    34557899999887641     11233454455566569999999999999999999999997


Q ss_pred             c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      | +|...+..      ...+.+.....+...+   ++++|+.+|+|||+|    +++.+||.....++|-|
T Consensus        81 gg~lft~l~~------~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglsk  145 (612)
T KOG0603|consen   81 GGDLFTRLSK------EVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSK  145 (612)
T ss_pred             cchhhhcccc------CCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhh
Confidence            4 88887766      4556677776666666   789999999999997    89999998877776643

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.06  E-value=3.9e-07  Score=100.69  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             eeecccccccCCceEEEeeeec-CchhHHHHHHHHHh-------------------------------------hh----
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYE-GRPVAVKRLVRALH-------------------------------------DV----  446 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~-g~~VAVK~i~~~~~-------------------------------------~~----  446 (549)
                      |+. +.||+|++|+||.+...+ |+.||||++.+...                                     ..    
T Consensus       122 fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~E  200 (537)
T PRK04750        122 FDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDE  200 (537)
T ss_pred             cCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHh
Confidence            554 689999999998865554 99999996653210                                     01    


Q ss_pred             --hHHHHHHHHh---cCCCCCeeEEeeeccC-cceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhheeecc
Q 042769          447 --AFKEIQNLIA---SDQHPNIVRWYGVEND-KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRL  519 (549)
Q Consensus       447 --~~~Ei~~L~~---~l~HpNIVrl~g~~~~-~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yL  519 (549)
                        +.+|..++.+   ...+.+.+.+-.++.+ ....+||||||.| .|.++-.-.........+.+..+..++.|+    
T Consensus       201 lD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi----  276 (537)
T PRK04750        201 LDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV----  276 (537)
T ss_pred             hCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH----
Confidence              1233322222   2234444444333332 3456799999987 786642210000011134444455555554    


Q ss_pred             cceeEEEeecc----ccccCC----CCchhhhhhhh
Q 042769          520 DSVKVIIRDLS----LWKADG----HPSPLLLSLMR  547 (549)
Q Consensus       520 H~~~IIHRDLK----Ll~~~G----~p~~~l~~Lmr  547 (549)
                      ...|++|+|+|    +++.+|    .-..+++++|.
T Consensus       277 f~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg  312 (537)
T PRK04750        277 FRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVG  312 (537)
T ss_pred             HhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEE
Confidence            46899999999    777777    44445555554

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=1.3e-06  Score=98.07  Aligned_cols=122  Identities=20%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             ecccccccCCceEEEe-eeecCchhHHHHHH----HH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          411 SNTEIAKGSNGTVVYE-GIYEGRPVAVKRLV----RA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~----~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ....+|.|++|.|+.. .......++.|...    ..     .......|+ .+-..+.|||++..+..+......+-.|
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~-~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEF-CIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhhe-eecccccCCchhhhHHHHhhcccchhhh
Confidence            4679999999965543 33334445555433    11     111133454 3445669999998888888777777779


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS  539 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~  539 (549)
                      |||+++|+.++..      ...++...+..++.|+   ++|||..||.|||+|    |+..+|.-+
T Consensus       401 E~~~~Dlf~~~~~------~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lk  460 (601)
T KOG0590|consen  401 EYCPYDLFSLVMS------NGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILK  460 (601)
T ss_pred             hcccHHHHHHHhc------ccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceE
Confidence            9999899999977      4568889999999999   699999999999999    667777433

>PF01011 PQQ: PQQ enzyme repeat family

Probab=97.99  E-value=5.3e-06  Score=58.41  Aligned_cols=30  Identities=27%  Similarity=0.566  Sum_probs=28.2

Q ss_pred             cceeecceeeEEEEEEccccceeeecCCCC
Q 042769           74 GAVTLGSKTTTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        74 g~v~~Gsk~~~~~~vda~tG~~~~~~~~~~  103 (549)
                      |.||+|+.++.+||+|++||+++|+|....
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            579999999999999999999999999865

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=97.94  E-value=7.7e-06  Score=55.32  Aligned_cols=32  Identities=41%  Similarity=0.773  Sum_probs=29.1

Q ss_pred             CCcccccceeecceeeEEEEEEccccceeeec
Q 042769           68 PHITEEGAVTLGSKTTTVFVLEAKTGRLIRTY   99 (549)
Q Consensus        68 P~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~   99 (549)
                      |++..||.||+|+.++.++|+|++||+++|++
T Consensus         1 ~~~~~~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CcEEECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            45666899999999999999999999999986

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.87  E-value=2.2e-05  Score=85.20  Aligned_cols=106  Identities=21%  Similarity=0.325  Sum_probs=77.6

Q ss_pred             cCCcchhhh----------hhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcc-ccchhhhccccccccc
Q 042769           55 KLPQSIDDY----------VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST-LQNEEQKSASYKHDKV  123 (549)
Q Consensus        55 ~~~~~~~~~----------v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  123 (549)
                      .|.|++++.          -+.+|.+. ++++|+-.-..++||+||+||+++|+|.-.-.+|. .+---|...++-.+++
T Consensus       187 AWty~TGD~k~~~d~~e~t~e~tPLkv-gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a  265 (773)
T COG4993         187 AWTYRTGDVKQPEDPGETTNEVTPLKV-GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKA  265 (773)
T ss_pred             eEEEecCcccCCCCcccccccccceEE-CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccc
Confidence            477777552          25699999 99999999999999999999999999987654331 1211355554554332


Q ss_pred             chHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhh
Q 042769          124 NNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY  177 (549)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a  177 (549)
                      .++      .-|+        ..||+...|..|.|+|++||++-|.|  ++-.+
T Consensus       266 ~~k------~pc~--------~rIflpt~DarlIALdA~tGkvc~~F--a~~Ga  303 (773)
T COG4993         266 DAK------SPCP--------RRIFLPTADARLIALDADTGKVCWSF--ANKGA  303 (773)
T ss_pred             ccc------CCCc--------eeEEeecCCceEEEEeCCCCcEehee--ccCce
Confidence            222      1243        68999999999999999999999996  44444

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.84  E-value=7e-06  Score=85.34  Aligned_cols=80  Identities=25%  Similarity=0.294  Sum_probs=64.2

Q ss_pred             CCCCCeeEEeeeccC---------------------------cceEEEEecccccchhhhhhhcccCCcccccCchhhhH
Q 042769          458 DQHPNIVRWYGVEND---------------------------KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATR  510 (549)
Q Consensus       458 l~HpNIVrl~g~~~~---------------------------~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~  510 (549)
                      -+|||||+++++|.+                           ...+|+||..+..+|.+|+..       ...+....+.
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~-------~~~s~r~~~~  345 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWT-------RHRSYRTGRV  345 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhc-------CCCchHHHHH
Confidence            489999999998642                           235899999999999999986       3456666777


Q ss_pred             Hhhhe---eecccceeEEEeecc----c--cccCCCCchhhhh
Q 042769          511 AMIEY---KLRLDSVKVIIRDLS----L--WKADGHPSPLLLS  544 (549)
Q Consensus       511 i~~qi---L~yLH~~~IIHRDLK----L--l~~~G~p~~~l~~  544 (549)
                      ++.|+   +.|||.+||.|||+|    |  +|.|+-|..++.+
T Consensus       346 ~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaD  388 (598)
T KOG4158|consen  346 ILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVAD  388 (598)
T ss_pred             HHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcc
Confidence            88888   669999999999999    3  4788888777543

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.61  E-value=1.7e-05  Score=76.87  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCC-CCeeEEeeeccCcceEEEEecccccc-hh-hhhhhcccCCcccccCchhhhHHhhhe---eecc-c
Q 042769          448 FKEIQNLIASDQH-PNIVRWYGVENDKDFVYLSLERCTCS-LD-DLIQTYSDSSCNSVFGEDQATRAMIEY---KLRL-D  520 (549)
Q Consensus       448 ~~Ei~~L~~~l~H-pNIVrl~g~~~~~~~~yLVmE~~~Gs-L~-~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yL-H  520 (549)
                      .+|+..|.++-.. -++.+.+++    ..-+|||||+.|+ +. ..++.       ..+++.....+..++   |..| |
T Consensus        74 ~kE~r~L~rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd-------~~~~~~~~~~i~~~i~~~l~~l~H  142 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKD-------AKLNDEEMKNAYYQVLSMMKQLYK  142 (197)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhc-------cccCHHHHHHHHHHHHHHHHHHHH
Confidence            4788777765433 456666654    3467999999863 32 22322       123344455555566   5566 8


Q ss_pred             ceeEEEeecc
Q 042769          521 SVKVIIRDLS  530 (549)
Q Consensus       521 ~~~IIHRDLK  530 (549)
                      ..++||+||+
T Consensus       143 ~~glVHGDLs  152 (197)
T cd05146         143 ECNLVHADLS  152 (197)
T ss_pred             hCCeecCCCC
Confidence            9999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=97.60  E-value=5.5e-05  Score=53.20  Aligned_cols=33  Identities=12%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             eEEEEEcccceeecccCCCCCceeeeeeehhhh
Q 042769          145 YLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY  177 (549)
Q Consensus       145 ~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a  177 (549)
                      +.||++..|+.|+|+|++||+++|.+..+....
T Consensus         1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~   33 (38)
T PF01011_consen    1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD   33 (38)
T ss_dssp             TEEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred             CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence            379999999999999999999999998876553

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=97.51  E-value=3.6e-05  Score=76.51  Aligned_cols=108  Identities=20%  Similarity=0.242  Sum_probs=84.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      ..+..+|.....|+ .+++++.|..+++|++....     +..+..|+-. ++...||||+.+++.|.....+.++..||
T Consensus       192 lnl~tkl~e~hsge-lwrgrwqgndivakil~vr~~t~risrdfneefp~-lrifshpnilpvlgacnsppnlv~isq~m  269 (448)
T KOG0195|consen  192 LNLITKLAESHSGE-LWRGRWQGNDIVAKILNVREVTARISRDFNEEFPA-LRIFSHPNILPVLGACNSPPNLVIISQYM  269 (448)
T ss_pred             hhhhhhhccCCCcc-cccccccCcchhhhhhhhhhcchhhcchhhhhCcc-eeeecCCchhhhhhhccCCCCceEeeeec
Confidence            44456788888887 56788999999999888532     2234455533 45669999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV  522 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~  522 (549)
                      + |+|+..++...    .-..+..++.++++.+   ++|||+.
T Consensus       270 p~gslynvlhe~t----~vvvd~sqav~faldiargmaflhsl  308 (448)
T KOG0195|consen  270 PFGSLYNVLHEQT----SVVVDHSQAVRFALDIARGMAFLHSL  308 (448)
T ss_pred             cchHHHHHHhcCc----cEEEecchHHHHHHHHHhhHHHHhhc
Confidence            8 89999998833    4467888899999888   8888864

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.49  E-value=2.2e-05  Score=72.91  Aligned_cols=117  Identities=14%  Similarity=0.014  Sum_probs=69.5

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc-chhh
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDD  489 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G-sL~~  489 (549)
                      +.|+.|.++.||... ..++.+++|......  .....+|+..+..+.+...+.+++.+...  ..++|||+++| ++.+
T Consensus         4 ~~l~~G~~~~vy~~~-~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~--~~~lv~e~i~G~~l~~   80 (170)
T cd05151           4 SPLKGGMTNKNYRVE-VANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPE--TGVLITEFIEGSELLT   80 (170)
T ss_pred             eecCCcccCceEEEE-ECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCC--CCeEEEEecCCCcccc
Confidence            568889999877633 347789999765432  12346777665554223334456665433  34799999987 6643


Q ss_pred             hhhhcccCCcccccCchhhhHHhhheeeccccee-----EEEeecc----ccccCCCCchhhhh
Q 042769          490 LIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVK-----VIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       490 ~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~-----IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      .  .         ........-+.+.|..||..+     ++|+|++    +++ ++.....++.
T Consensus        81 ~--~---------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~  132 (170)
T cd05151          81 E--D---------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWE  132 (170)
T ss_pred             c--c---------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecc
Confidence            2  1         111122223334478899877     5999999    555 5554444333

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.31  E-value=6.6e-06  Score=94.62  Aligned_cols=113  Identities=18%  Similarity=0.117  Sum_probs=90.1

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +...+.||.+.|=+|.++....|. |+||++.+.       ...+..+|++  ..+++|||.+.+.-+...+...|||-+
T Consensus        25 ~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik--~~l~~~pn~lPfqk~~~t~kAAylvRq  101 (1431)
T KOG1240|consen   25 CHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIK--FALMKAPNCLPFQKVLVTDKAAYLVRQ  101 (1431)
T ss_pred             eeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHH--HHhhcCCcccchHHHHHhhHHHHHHHH
Confidence            777889999999876554334454 888866653       2335556665  456699999999988888888999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      |...+|.|.|..      +.-+.+.+.+.|+.|+   |..+|..||+|+|||
T Consensus       102 yvkhnLyDRlST------RPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIK  147 (1431)
T KOG1240|consen  102 YVKHNLYDRLST------RPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIK  147 (1431)
T ss_pred             HHhhhhhhhhcc------chHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence            999999999876      4557778888899999   789999999999999

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.25  E-value=0.00022  Score=67.83  Aligned_cols=122  Identities=18%  Similarity=0.182  Sum_probs=76.0

Q ss_pred             ecccccccCCceEEEeeeecCchhHHH-HHHHH----------HhhhhHHHHHHHHhcCCCCC--eeEEeeeccCcceEE
Q 042769          411 SNTEIAKGSNGTVVYEGIYEGRPVAVK-RLVRA----------LHDVAFKEIQNLIASDQHPN--IVRWYGVENDKDFVY  477 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~~~~~g~~VAVK-~i~~~----------~~~~~~~Ei~~L~~~l~HpN--IVrl~g~~~~~~~~y  477 (549)
                      ....|-+|+-+. +..+.+.|+.+.|| ++.+.          ...+..+|...|.++ .--.  ..+++  +.+...-.
T Consensus        11 ~l~likQGAEAr-v~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~-~~~GI~~P~l~--~~D~~~~~   86 (229)
T KOG3087|consen   11 SLELIKQGAEAR-VPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKC-RALGIPAPRLI--FIDTYGGQ   86 (229)
T ss_pred             cceeeeccceee-EeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHH-HHhCCCCceEE--EEecCCCe
Confidence            346788899886 34566778877776 22221          123456777665543 1112  22333  23333445


Q ss_pred             EEeccccc--chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          478 LSLERCTC--SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       478 LVmE~~~G--sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |+|||.+|  ++.+++...-    .......-...++.++   +.-||.++|||+||-    |+.++|.+.+
T Consensus        87 i~ME~~~g~~~vk~~i~~~~----~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~  154 (229)
T KOG3087|consen   87 IYMEFIDGASTVKDFILSTM----EDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQIT  154 (229)
T ss_pred             EEEEeccchhHHHHHHHHHc----cCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCc
Confidence            88999998  8999998733    2222222224555555   889999999999998    7777777664

>smart00564 PQQ beta-propeller repeat

Probab=97.20  E-value=0.00026  Score=47.72  Aligned_cols=27  Identities=19%  Similarity=0.463  Sum_probs=25.3

Q ss_pred             eEEEEEcccceeecccCCCCCceeeee
Q 042769          145 YLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       145 ~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      +.||+++.++.|+|+|+++|+++|+++
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~~   33 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTYK   33 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence            689999999999999999999999863

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=97.19  E-value=0.00011  Score=52.13  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=26.8

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL   50 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~   50 (549)
                      ++|+++++.++.++              |++..+.+|.++.||.|||+|+
T Consensus         3 ~~W~~~~~~~~~~~--------------~~v~~g~vyv~~~dg~l~ald~   38 (40)
T PF13570_consen    3 VLWSYDTGGPIWSS--------------PAVAGGRVYVGTGDGNLYALDA   38 (40)
T ss_dssp             EEEEEE-SS---S----------------EECTSEEEEE-TTSEEEEEET
T ss_pred             eeEEEECCCCcCcC--------------CEEECCEEEEEcCCCEEEEEeC
Confidence            47999999999999              8999999999999999999996

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=7e-05  Score=84.37  Aligned_cols=130  Identities=18%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             eeecccccccCCceEEEee--eecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCC-CCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYEG--IYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQ-HPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~--~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |.+.+.||+|+|+.|....  ......+|+|.+....     ......|... ...+. |+|++++++.....++.++++
T Consensus        22 ~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~-~~~~s~h~n~~~~~~~~~~~~~~~~~~  100 (601)
T KOG0590|consen   22 YKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDI-QKKLSKHSNTVHMIEPSSSPRSYLLSL  100 (601)
T ss_pred             ccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccc-cccccccccccccCCccCCCccccccc
Confidence            7777789999999976632  2345567777665331     2233345533 33334 999999999999999999999


Q ss_pred             ccccc-chhhhh-hhcccCCcccccCchhhhHHhhhe---eeccc-ceeEEEeecc----ccccCC-CCchhhhh
Q 042769          481 ERCTC-SLDDLI-QTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKVIIRDLS----LWKADG-HPSPLLLS  544 (549)
Q Consensus       481 E~~~G-sL~~~L-~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~IIHRDLK----Ll~~~G-~p~~~l~~  544 (549)
                      |+..| ++++.+ ..     .....+...+.+++.|+   +.|+| ..++.|||+|    +++..| ..+...+.
T Consensus       101 ~~s~g~~~f~~i~~~-----~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~  170 (601)
T KOG0590|consen  101 SYSDGGSLFSKISHP-----DSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFG  170 (601)
T ss_pred             CcccccccccccccC-----CccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCch
Confidence            99875 898888 43     12267788889999999   89999 9999999999    778777 55544443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=96.96  E-value=0.00013  Score=74.63  Aligned_cols=133  Identities=18%  Similarity=0.122  Sum_probs=67.9

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHH---------------hcCCCCCeeEE
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLI---------------ASDQHPNIVRW  466 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~---------------~~l~HpNIVrl  466 (549)
                      +..+..||.|+++.||. .+..+|+.+|||.+...      ..+...+|.....               +++----++++
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            56678999999998777 57788999988743311      1112222221111               11111112222


Q ss_pred             eee---ccC---cc-----eEEEEecccccchhhhhhhcccCCcccccCchhh--hHHhhhe---eecccceeEEEeecc
Q 042769          467 YGV---END---KD-----FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA--TRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       467 ~g~---~~~---~~-----~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~--~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      -+-   +..   ..     ..+++|+-+.+||.+++......... ......+  ..+..|+   +++||..|++|+|||
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~-~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQT-HSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             cCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence            110   111   11     24678888888887776532111111 1122222  2333455   789999999999999


Q ss_pred             ----ccccCCCCchhh
Q 042769          531 ----LWKADGHPSPLL  542 (549)
Q Consensus       531 ----Ll~~~G~p~~~l  542 (549)
                          +++.+|...+-.
T Consensus       173 ~~nfll~~~G~v~Lg~  188 (288)
T PF14531_consen  173 PENFLLDQDGGVFLGD  188 (288)
T ss_dssp             GGGEEE-TTS-EEE--
T ss_pred             eeeEEEcCCCCEEEcC
Confidence                888998755443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.83  E-value=0.00019  Score=79.38  Aligned_cols=88  Identities=18%  Similarity=0.335  Sum_probs=61.3

Q ss_pred             hHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ce
Q 042769          447 AFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SV  522 (549)
Q Consensus       447 ~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~  522 (549)
                      +.+-++.|+. ++||||++++..+...+.+|||+|.+.- |..+++.         +........+.||   |.||| ++
T Consensus        56 ~~~A~k~lKt-lRHP~Il~yL~t~e~~~~~ylvTErV~P-l~~~lk~---------l~~~~v~~Gl~qIl~AL~FL~~d~  124 (690)
T KOG1243|consen   56 AKRAVKRLKT-LRHPNILSYLDTTEEEGTLYLVTERVRP-LETVLKE---------LGKEEVCLGLFQILAALSFLNDDC  124 (690)
T ss_pred             HHHHHHHhhh-ccCchhhhhhhhhcccCceEEEeecccc-HHHHHHH---------hHHHHHHHHHHHHHHHHHHHhccC
Confidence            3344445544 4999999999999999999999999841 2333443         2244555566677   88997 78


Q ss_pred             eEEEeecc----ccccCCCCchhhhhh
Q 042769          523 KVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       523 ~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +++|.+|.    .+++.|+=++--+.+
T Consensus       125 ~lvHgNv~~~SVfVn~~GeWkLggle~  151 (690)
T KOG1243|consen  125 NLVHGNVCKDSVFVNESGEWKLGGLEL  151 (690)
T ss_pred             CeeeccEeeeeEEEcCCCcEEEeeeEE
Confidence            99999998    567777644443333

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=96.56  E-value=0.0015  Score=66.37  Aligned_cols=85  Identities=12%  Similarity=0.036  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHhcC----CCCCeeEEeeeccC--cceEEEEeccccc--chhhhhhhcccCCcccccCchhhhHHhhhe--
Q 042769          446 VAFKEIQNLIASD----QHPNIVRWYGVEND--KDFVYLSLERCTC--SLDDLIQTYSDSSCNSVFGEDQATRAMIEY--  515 (549)
Q Consensus       446 ~~~~Ei~~L~~~l----~HpNIVrl~g~~~~--~~~~yLVmE~~~G--sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi--  515 (549)
                      .+.+|+..+..+.    .-|.+|-+...-..  ...-+||||+++|  +|.+++....    ....+......++.++  
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~----~~~~~~~~~~~ll~~la~  149 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWA----TNPPDPRLKRMLIKRVAT  149 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhc----ccCCCHHHHHHHHHHHHH
Confidence            3667876654432    22444433211111  2357899999986  7999886421    1223444555666666  


Q ss_pred             -eecccceeEEEeecc----cccc
Q 042769          516 -KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       516 -L~yLH~~~IIHRDLK----Ll~~  534 (549)
                       +.-||..||+|+|++    |++.
T Consensus       150 ~i~~LH~~Gi~HgDL~~~NiLl~~  173 (268)
T PRK15123        150 MVRDMHAAGINHRDCYICHFLLHL  173 (268)
T ss_pred             HHHHHHHCcCccCCCChhhEEEec
Confidence             789999999999999    6664

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.55  E-value=0.0013  Score=62.82  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             cccccCCceEEEeeeecCchhHHH----------HHHHH-HhhhhHHHHHHHHhcCC-CCCeeEEeeeccCcceEEEEec
Q 042769          414 EIAKGSNGTVVYEGIYEGRPVAVK----------RLVRA-LHDVAFKEIQNLIASDQ-HPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       414 ~LG~G~fG~V~~~~~~~g~~VAVK----------~i~~~-~~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .+++|+-+.++.. .+-|..+.+|          .+... ...+..+|...|.+.-. --+...++++.  .....|+||
T Consensus         3 ~i~~GAEa~i~~~-~~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD--~~~~~I~me   79 (204)
T COG3642           3 LIKQGAEAIIYLT-DFLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVD--PDNGLIVME   79 (204)
T ss_pred             hhhCCcceeEEee-eccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEc--CCCCEEEEE
Confidence            5677777776543 2233333333          33322 23356678766544311 12344455554  445679999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc---ccccCCCCchhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS---LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK---Ll~~~G~p~~~l~~L  545 (549)
                      |.+| .|.+++..      .       ...++..+   +.-||..+|+|+||.   ++-..+.+-..++.|
T Consensus        80 ~I~G~~lkd~l~~------~-------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~i~~IDfGL  137 (204)
T COG3642          80 YIEGELLKDALEE------A-------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGRIYFIDFGL  137 (204)
T ss_pred             EeCChhHHHHHHh------c-------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCcEEEEECCc
Confidence            9998 67778876      1       12344444   778999999999998   555555554444444

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.55  E-value=0.0015  Score=71.47  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=95.8

Q ss_pred             CCccceeeeeecccccc--cCCceEEEe-e--eecCchhHHHHHHH--H---HhhhhHHHHHHHHhcCCCCCeeEEeeec
Q 042769          401 QGRNVGKLFVSNTEIAK--GSNGTVVYE-G--IYEGRPVAVKRLVR--A---LHDVAFKEIQNLIASDQHPNIVRWYGVE  470 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~--G~fG~V~~~-~--~~~g~~VAVK~i~~--~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~  470 (549)
                      ........|.+...+|.  |.+|.++.. .  ..++..+|+|+-+.  .   ...+-.+|+........|+|.++.+..+
T Consensus       108 ~~s~~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~  187 (524)
T KOG0601|consen  108 FDSFFDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAW  187 (524)
T ss_pred             ccchhhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccc
Confidence            33444555777889999  999998773 3  57789999996331  1   1223457776666777899999999999


Q ss_pred             cCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe-------eecccceeEEEeecc
Q 042769          471 NDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY-------KLRLDSVKVIIRDLS  530 (549)
Q Consensus       471 ~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi-------L~yLH~~~IIHRDLK  530 (549)
                      ...+..|+-+|+|..+|.++...     ....++...++..+.++       |.++|..+++|-|+|
T Consensus       188 e~~~~lfiqtE~~~~sl~~~~~~-----~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~k  249 (524)
T KOG0601|consen  188 EGSGILFIQTELCGESLQSYCHT-----PCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLK  249 (524)
T ss_pred             ccCCcceeeeccccchhHHhhhc-----ccccCCchhhhhHHhhhhhcccccccccCCCcccccccc
Confidence            99999999999999999888776     12336777777777665       679999999999999

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.54  E-value=0.001  Score=72.84  Aligned_cols=116  Identities=19%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             eeecccccccCCceEEEeee--ecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~--~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |.....||.|.|+.|+.+.+  .++..|++|.+.+.-     ......|+.....+..|.+++++...+...+..|+-.|
T Consensus       267 f~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e  346 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYIPLE  346 (524)
T ss_pred             cceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccCchh
Confidence            88889999999999877543  457899999877541     12345677566666689999999999888888999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      ||+| ++...+.-      ...+.+...+++..|+   +.++|++.++|+|+|
T Consensus       347 ~~~~~s~~l~~~~------~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~  393 (524)
T KOG0601|consen  347 FCEGGSSSLRSVT------SQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVK  393 (524)
T ss_pred             hhcCcchhhhhHH------HHhcCcchhhhhHHHHHhccccccchhhhccccc
Confidence            9974 54433322      3468888889999998   779999999999999

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=96.49  E-value=0.0013  Score=76.19  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC  485 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G  485 (549)
                      ..|...+.|..|+||.||+ +++.+.+++|+ +++++.  .+.|-   ++..-..|.+|                    |
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~--lilRn---ilt~a~npfvv--------------------g  136 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQN--LILRN---ILTFAGNPFVV--------------------G  136 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhh-cccccc--hhhhc---cccccCCccee--------------------c
Confidence            3488899999999999998 68889999999 444431  11111   11221333333                    5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhheeecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |-...++.      .+.++.+.+     -.++|||+.+|+|||+|    |+..-||.+.-.+.||.
T Consensus       137 Dc~tllk~------~g~lPvdmv-----la~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  137 DCATLLKN------IGPLPVDMV-----LAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             hhhhhccc------CCCCcchhh-----HHhHhhccCCeecCCCCCCcceeeecccccccchhhhh
Confidence            55555554      334444431     12789999999999999    88999999988887764

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.30  E-value=0.0017  Score=63.31  Aligned_cols=93  Identities=19%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHhcCC-CCCeeEEeeeccCc----ceEEEEeccccc--chhhhhhhcccCCcccccCchhhhHHhhhe---
Q 042769          446 VAFKEIQNLIASDQ-HPNIVRWYGVENDK----DFVYLSLERCTC--SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---  515 (549)
Q Consensus       446 ~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~----~~~yLVmE~~~G--sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---  515 (549)
                      .+.+|+..+..+.. .-...+.+++....    ...+||+|+++|  +|.+++...      ...+......++.++   
T Consensus        57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~------~~~~~~~~~~ll~~l~~~  130 (206)
T PF06293_consen   57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQW------EQLDPSQRRELLRALARL  130 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhh------cccchhhHHHHHHHHHHH
Confidence            46677766444322 11233333333321    246899999986  799998762      224445555666666   


Q ss_pred             eecccceeEEEeecc----ccccCC-CCchhhhh
Q 042769          516 KLRLDSVKVIIRDLS----LWKADG-HPSPLLLS  544 (549)
Q Consensus       516 L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~  544 (549)
                      +.-||.+||+|+|++    |++.++ .+...+++
T Consensus       131 i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lID  164 (206)
T PF06293_consen  131 IAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLID  164 (206)
T ss_pred             HHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEc
Confidence            889999999999999    777665 44444433

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.11  E-value=0.0017  Score=62.58  Aligned_cols=87  Identities=15%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHhcCCC-CCeeEEeeeccCcceEEEEecccc--cchhhhhhhcccCCcccccCchhhhHHhhhe----eec
Q 042769          446 VAFKEIQNLIASDQH-PNIVRWYGVENDKDFVYLSLERCT--CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY----KLR  518 (549)
Q Consensus       446 ~~~~Ei~~L~~~l~H-pNIVrl~g~~~~~~~~yLVmE~~~--GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi----L~y  518 (549)
                      .+.+|+..|.++... -++.+.+.+.    .-+|||||++  |.....+...       .++......++.++    ..-
T Consensus        54 ~~~~E~~~L~~l~~~Gv~vP~p~~~~----~~~ivME~I~~~G~~~~~l~~~-------~~~~~~~~~~~~~il~~~~~~  122 (188)
T PF01163_consen   54 WAKKEFRNLKRLYEAGVPVPKPYDYN----RNVIVMEYIGEDGVPLPRLKDV-------DLSPEEPKELLEEILEEIIKM  122 (188)
T ss_dssp             HHHHHHHHHHHCCCTT-SS--EEEEE----TTEEEEE--EETTEEGGCHHHC-------GGGGSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCccCCcEEEEe----CCEEEEEecCCCccchhhHHhc-------cccchhHHHHHHHHHHHHHHH
Confidence            466899888777444 2677777653    2469999998  7433444441       11133334444444    445


Q ss_pred             ccceeEEEeecc----ccccCCCCchhhhh
Q 042769          519 LDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       519 LH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      +|..||+|+||.    |++.+ .|-..++.
T Consensus       123 ~~~~givHGDLs~~NIlv~~~-~~~iIDf~  151 (188)
T PF01163_consen  123 LHKAGIVHGDLSEYNILVDDG-KVYIIDFG  151 (188)
T ss_dssp             HHCTTEEESS-STTSEEEETT-CEEE--GT
T ss_pred             HHhcCceecCCChhhEEeecc-eEEEEecC
Confidence            789999999998    44443 55444443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=95.76  E-value=0.0043  Score=59.78  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCC-CCCeeEEeeeccCcc---eEEEEecccc
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQ-HPNIVRWYGVENDKD---FVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~~---~~yLVmE~~~  484 (549)
                      +.|+.|.++.+|+....+|+.+++|......    .....+|...+..+.. +.++.+++.+.....   ..+++|||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            5689999999887544446889999765432    2356678766544422 244666777766543   5689999998


Q ss_pred             c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccce
Q 042769          485 C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV  522 (549)
Q Consensus       485 G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~  522 (549)
                      | +|.+.+..       ..+++.....++.++   |..||+.
T Consensus        84 G~~l~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH~~  118 (223)
T cd05154          84 GRVLRDRLLR-------PELSPEERRALARALADTLAALHSV  118 (223)
T ss_pred             CEecCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7 67665421       124445555555555   6677754

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK09902 hypothetical protein; Provisional

Probab=95.49  E-value=0.0051  Score=60.19  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             hhhhHHHHHHHHhcCCC-CCeeEEeeecc--C--cceEEEEeccccc--chhhhhhhcccCCcccccCchhhhHHhhhe-
Q 042769          444 HDVAFKEIQNLIASDQH-PNIVRWYGVEN--D--KDFVYLSLERCTC--SLDDLIQTYSDSSCNSVFGEDQATRAMIEY-  515 (549)
Q Consensus       444 ~~~~~~Ei~~L~~~l~H-pNIVrl~g~~~--~--~~~~yLVmE~~~G--sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi-  515 (549)
                      ...+.+|+..|..+-.. -.+.+...+..  .  .-.-+||+|-++|  +|.+++....    ..+.+......++.++ 
T Consensus        63 ~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~----~~~~~~~~k~~il~~va  138 (216)
T PRK09902         63 RPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHA----VSPYSDEVRQAMLKAVA  138 (216)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEEEeCCCCccHHHHHhcCC----cCCcchHHHHHHHHHHH
Confidence            34577888776554222 12444432211  1  1236799998875  9999986521    1233444444555555 


Q ss_pred             --eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          516 --KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       516 --L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                        +.-||+.|+.|+|+.    |++.+|.+...+++|
T Consensus       139 ~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDl  174 (216)
T PRK09902        139 LAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDL  174 (216)
T ss_pred             HHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEh
Confidence              889999999999998    777777655555543

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=95.45  E-value=0.0071  Score=65.61  Aligned_cols=105  Identities=15%  Similarity=0.028  Sum_probs=70.9

Q ss_pred             EEEe-eeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCc----ceEEEEeccccc--chhhhhhh
Q 042769          423 VVYE-GIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDK----DFVYLSLERCTC--SLDDLIQT  493 (549)
Q Consensus       423 V~~~-~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~----~~~yLVmE~~~G--sL~~~L~~  493 (549)
                      .|++ ...+|..|++||+.-..  .......+....+.+.|+|||++.+++...    ..+++|++|+++  +|.++--.
T Consensus       292 tyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~  371 (655)
T KOG3741|consen  292 TYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFA  371 (655)
T ss_pred             eEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHcc
Confidence            3553 66789999999994221  111111122234555999999999998743    358999999974  88877543


Q ss_pred             cccC---------CcccccCchhhhHHhhhe---eecccceeEEEe
Q 042769          494 YSDS---------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIR  527 (549)
Q Consensus       494 ~~~~---------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHR  527 (549)
                      ....         ..+...+|..+|.++.|+   |.++|+.|+.-+
T Consensus       372 ~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck  417 (655)
T KOG3741|consen  372 NPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACK  417 (655)
T ss_pred             CCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceee
Confidence            2211         233457889999999999   889998775543

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=95.36  E-value=0.0077  Score=60.81  Aligned_cols=119  Identities=22%  Similarity=0.133  Sum_probs=71.4

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHH----------HHHHH---------------HhhhhHHHHHHHHhcCCC-CC
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVK----------RLVRA---------------LHDVAFKEIQNLIASDQH-PN  462 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK----------~i~~~---------------~~~~~~~Ei~~L~~~l~H-pN  462 (549)
                      ..++..||-|.-+.||.+....|.++|||          .++..               ....+.+|++.|..+-.+ -.
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            44567999999999887766678888888          11110               011366899888776333 24


Q ss_pred             eeEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhheeecccceeEEEeecc----ccccCCC
Q 042769          463 IVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       463 IVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      |.+-++.    +...+|||+.+| -|...--.        .-..+.+...+.+.+.-+-..|+||+|+.    |+++||.
T Consensus       173 VP~P~~~----nRHaVvMe~ieG~eL~~~r~~--------~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~  240 (304)
T COG0478         173 VPKPIAW----NRHAVVMEYIEGVELYRLRLD--------VENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGD  240 (304)
T ss_pred             CCCcccc----ccceeeeehcccceeecccCc--------ccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCC
Confidence            4444433    456799999998 44332101        11222233333222222228999999998    8888876


Q ss_pred             Cc
Q 042769          538 PS  539 (549)
Q Consensus       538 p~  539 (549)
                      +.
T Consensus       241 ~~  242 (304)
T COG0478         241 IV  242 (304)
T ss_pred             EE
Confidence            43

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=94.60  E-value=0.011  Score=65.39  Aligned_cols=139  Identities=17%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             cceeeeee--cccccccCCceEEEeeeecCchhHHHHHHHHH-------------------------------------h
Q 042769          404 NVGKLFVS--NTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-------------------------------------H  444 (549)
Q Consensus       404 ~igk~y~~--~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-------------------------------------~  444 (549)
                      .+.+.|.-  ...|+.++-|+||.+...+|+.||||+.++.-                                     .
T Consensus       120 ~iee~F~eF~~~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~  199 (517)
T COG0661         120 PIEELFSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFE  199 (517)
T ss_pred             CHHHHHHHcCCCchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHH
Confidence            44444443  26899999999999888889999999554310                                     0


Q ss_pred             h------hhHHHHHHH---HhcCC-CCCeeEEeeecc-CcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHh
Q 042769          445 D------VAFKEIQNL---IASDQ-HPNIVRWYGVEN-DKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM  512 (549)
Q Consensus       445 ~------~~~~Ei~~L---~~~l~-HpNIVrl~g~~~-~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~  512 (549)
                      +      ...+|..++   .+..+ .++| ++-.+|+ ......|+|||+.| .+.+...-.     ...++...+....
T Consensus       200 ~~l~~ElDy~~EA~n~~~~~~nf~~~~~v-~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~-----~~g~d~k~ia~~~  273 (517)
T COG0661         200 KRLREELDYRREAANAERFRENFKDDPDV-YVPKVYWEYTTRRVLTMEWIDGIKISDIAALK-----SAGIDRKELAELL  273 (517)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCCCe-EeceeehhccCCcEEEEEeeCCEecccHHHHH-----hcCCCHHHHHHHH
Confidence            0      112333332   22222 3433 3333333 34556799999998 677663221     1223333333333


Q ss_pred             hhe-eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          513 IEY-KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       513 ~qi-L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      .++ +..+=..|++|.|..    +++.+|+-..+++++|+-
T Consensus       274 ~~~f~~q~~~dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~  314 (517)
T COG0661         274 VRAFLRQLLRDGFFHADPHPGNILVRSDGRIVLLDFGIVGR  314 (517)
T ss_pred             HHHHHHHHHhcCccccCCCccceEEecCCcEEEEcCcceec
Confidence            333 444445788999998    788888877777777763

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=94.51  E-value=0.0076  Score=60.15  Aligned_cols=117  Identities=21%  Similarity=0.160  Sum_probs=69.0

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHHH---------------------------hhhhHHHHHHHHhcCC-CCCee
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL---------------------------HDVAFKEIQNLIASDQ-HPNIV  464 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~---------------------------~~~~~~Ei~~L~~~l~-HpNIV  464 (549)
                      ..|..|.-+.||++...++..+|||+.....                           ..-..+|+.+|.++.. +-.+.
T Consensus        54 g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP  133 (268)
T COG1718          54 GCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVP  133 (268)
T ss_pred             eeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4788888888888766778889988554320                           0013467777666432 23344


Q ss_pred             EEeeeccCcceEEEEecccc--cchhhhhhhcccCCcccccCchhhhHHhhheeeccc----ceeEEEeecc----cccc
Q 042769          465 RWYGVENDKDFVYLSLERCT--CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD----SVKVIIRDLS----LWKA  534 (549)
Q Consensus       465 rl~g~~~~~~~~yLVmE~~~--GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH----~~~IIHRDLK----Ll~~  534 (549)
                      +-+.+..    -.|||||+.  |.-.-.|+.       -.+....+..+..+++++++    ..++||.||-    |++ 
T Consensus       134 ~Pi~~~~----nVLvMEfIg~~g~pAP~LkD-------v~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-  201 (268)
T COG1718         134 EPIAFRN----NVLVMEFIGDDGLPAPRLKD-------VPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-  201 (268)
T ss_pred             CceeecC----CeEEEEeccCCCCCCCCccc-------CCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-
Confidence            4444432    358999986  333333333       12333355555556655544    5899999998    666 


Q ss_pred             CCCCchh
Q 042769          535 DGHPSPL  541 (549)
Q Consensus       535 ~G~p~~~  541 (549)
                      +|.|-..
T Consensus       202 ~~~p~iI  208 (268)
T COG1718         202 DGEPYII  208 (268)
T ss_pred             CCeEEEE
Confidence            6655444

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=93.69  E-value=0.031  Score=61.16  Aligned_cols=69  Identities=16%  Similarity=0.144  Sum_probs=56.0

Q ss_pred             cCCCCCeeEEeeeccCcceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeE-EEeecc
Q 042769          457 SDQHPNIVRWYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKV-IIRDLS  530 (549)
Q Consensus       457 ~l~HpNIVrl~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~I-IHRDLK  530 (549)
                      .+.|.|+.+++|.+.+....++|.+||. |+|.+.+..     ....++..-...+++.+   |+|||.-.| .|+.|+
T Consensus         3 ~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~-----~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~   76 (484)
T KOG1023|consen    3 QLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSN-----EDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALK   76 (484)
T ss_pred             ccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhc-----cccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeec
Confidence            3589999999999999999999999997 899999976     12345555556666777   899996655 999998

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.54  E-value=0.02  Score=58.99  Aligned_cols=76  Identities=20%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             HHHHhcCCCCCeeEEeeeccCcc-----eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce
Q 042769          452 QNLIASDQHPNIVRWYGVENDKD-----FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV  522 (549)
Q Consensus       452 ~~L~~~l~HpNIVrl~g~~~~~~-----~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~  522 (549)
                      .+|+.+ .|.|||+++.++.+..     ...++.|||. |+|.++|++.+.  ....+......+++.||   |.|||+.
T Consensus       119 dnllql-vHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~--~~~a~~~~~wkkw~tqIlsal~yLhs~  195 (458)
T KOG1266|consen  119 DNLLQL-VHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKK--NQKALFQKAWKKWCTQILSALSYLHSC  195 (458)
T ss_pred             HHHHHH-HHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHH--hhhhhhHHHHHHHHHHHHhhhhhhhcc
Confidence            345555 8999999998876544     4788999997 899999997442  34457777788899999   8899965


Q ss_pred             --eEEEeecc
Q 042769          523 --KVIIRDLS  530 (549)
Q Consensus       523 --~IIHRDLK  530 (549)
                        .|+|+++.
T Consensus       196 ~PpiihgnlT  205 (458)
T KOG1266|consen  196 DPPIIHGNLT  205 (458)
T ss_pred             CCccccCCcc
Confidence              69999987

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.01  E-value=0.11  Score=57.36  Aligned_cols=122  Identities=16%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             cccccccceeeecC----CcchhhhccccccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCC
Q 042769           27 NASELTNSFFIDCG----EDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        27 ~~~~~~~~~~~~~~----~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      ..+...+++|+...    .....|++|..|..+|-+.....-..+-...+||.+++++. ..++.+|.. |+++|.+..+
T Consensus       108 ~~~~~~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~  185 (477)
T PF05935_consen  108 SDEEMEDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLP  185 (477)
T ss_dssp             E-TT-TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--
T ss_pred             cccccCCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecC
Confidence            34667777766665    78899999999999999888775554434556999999986 999999995 9999999887


Q ss_pred             CCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc-------------cceeecccCCCCCceee
Q 042769          103 HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT-------------DYTLQSFEPNSDNVSWS  169 (549)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~-------------d~~l~a~d~~~g~~~Wn  169 (549)
                      ..-          ..+++|-              ...+  ..++|++...             +-.|.-+| .+|++.|-
T Consensus       186 ~~~----------~~~HHD~--------------~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~  238 (477)
T PF05935_consen  186 GGY----------YDFHHDI--------------DELP--NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWE  238 (477)
T ss_dssp             TTE----------E-B-S-E--------------EE-T--TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEE
T ss_pred             Ccc----------ccccccc--------------EECC--CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEE
Confidence            510          1122211              0000  0144554441             23588899 79999999


Q ss_pred             eeeehhhh
Q 042769          170 MTVAEIGY  177 (549)
Q Consensus       170 ~~~~~~~a  177 (549)
                      +...++-.
T Consensus       239 wd~~d~ld  246 (477)
T PF05935_consen  239 WDFFDHLD  246 (477)
T ss_dssp             EEGGGTS-
T ss_pred             EehHHhCC
Confidence            99988763

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.69  E-value=0.22  Score=49.55  Aligned_cols=106  Identities=13%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-ee-ecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VT-LGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~-~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      +|+.++.|+.++..|. +|.....+....-+ .+.+++.||. +| .++.++.++.+|.++|+.+.++........    
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----   77 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL----   77 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCCC-CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE----
Confidence            5788889999999998 66654445443322 2345666875 55 467789999999999998876654321000    


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEc-ccceeecccCCCCCceeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR-TDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r-~d~~l~a~d~~~g~~~Wn~~  171 (549)
                                          ...++.      ...+|+.. .|+.|+.+|.++++....+.
T Consensus        78 --------------------~~~~~~------g~~l~~~~~~~~~l~~~d~~~~~~~~~~~  112 (300)
T TIGR03866        78 --------------------FALHPN------GKILYIANEDDNLVTVIDIETRKVLAEIP  112 (300)
T ss_pred             --------------------EEECCC------CCEEEEEcCCCCeEEEEECCCCeEEeEee
Confidence                                001111      14677764 57899999988877665554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=91.84  E-value=0.073  Score=51.71  Aligned_cols=79  Identities=23%  Similarity=0.291  Sum_probs=56.2

Q ss_pred             hhhhHHHHHHHHh-----cCCCCCeeEEeeeccCcceEEEEeccc---cc----chhhhhhhcccCCcccccCchhhhHH
Q 042769          444 HDVAFKEIQNLIA-----SDQHPNIVRWYGVENDKDFVYLSLERC---TC----SLDDLIQTYSDSSCNSVFGEDQATRA  511 (549)
Q Consensus       444 ~~~~~~Ei~~L~~-----~l~HpNIVrl~g~~~~~~~~yLVmE~~---~G----sL~~~L~~~~~~~~~~~l~~~~~~~i  511 (549)
                      ..+..+|+.....     ...+.+|.+++|+.+++.-.-+|+|..   +|    +|.++++.       +.+++ .....
T Consensus        55 ~~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~-------~~~~~-~~~~~  126 (199)
T PF10707_consen   55 YRQNRRELRYYKQLSLRRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE-------GGLTE-ELRQA  126 (199)
T ss_pred             hHHHHHHHHHHHHHhhccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc-------CCccH-HHHHH
Confidence            3445566654322     335789999999999999999999986   24    68888865       34555 55555


Q ss_pred             hhheeecccceeEEEeecc
Q 042769          512 MIEYKLRLDSVKVIIRDLS  530 (549)
Q Consensus       512 ~~qiL~yLH~~~IIHRDLK  530 (549)
                      +.+..+||-+.+|+.+|++
T Consensus       127 L~~f~~~l~~~~Iv~~dl~  145 (199)
T PF10707_consen  127 LDEFKRYLLDHHIVIRDLN  145 (199)
T ss_pred             HHHHHHHHHHcCCeecCCC
Confidence            5666778888888888887

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=91.40  E-value=0.4  Score=49.85  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=83.0

Q ss_pred             eeecCCcchhhhccc-cccccCCc--chhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQ--SIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~--~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      +-.|.-+|-|..+.. +|..+|++  ..++++--.=+-. --++.+|++|+.++.-...++.....|+-+.++       
T Consensus       121 LATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~-------  192 (399)
T KOG0296|consen  121 LATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP-------  192 (399)
T ss_pred             EEecCCCccEEEEEcccCceEEEeecccCceEEEEeccc-ccEEEeecCCCcEEEEECCCcceeeEecCCCCC-------
Confidence            356667888888888 88889987  5666553332223 347999999999999988887666666554311       


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhcccc
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDF  184 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~~  184 (549)
                      |+                .+..-|..      ..+..|-+|++|+..+++||.+.-.++-++ ...++|...
T Consensus       193 ct----------------~G~f~pdG------Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~  241 (399)
T KOG0296|consen  193 CT----------------CGEFIPDG------KRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISL  241 (399)
T ss_pred             cc----------------cccccCCC------ceEEEEecCceEEEEecCCCceeEEecccc-cCcCCcccc
Confidence            11                11122222      689999999999999999999999998777 555666653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=91.25  E-value=0.87  Score=45.34  Aligned_cols=133  Identities=17%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             ceeccCCCccccccccceeeeeccccccccccce-eeecCCcchhhhccc--cccc---cCCcchhhhhhcCCCcccccc
Q 042769            2 SWTFGTGTPIYSSYQAPVQATVDQDNASELTNSF-FIDCGEDWGLYAHGL--LGRM---KLPQSIDDYVKTAPHITEEGA   75 (549)
Q Consensus         2 ~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~ly~~~~--~g~~---~~~~~~~~~v~~sP~~~~dg~   75 (549)
                      +|--.||-.+-|- |++...+     .-++++++ |+.-.+.+++-.+|+  .|..   ++|.+++. -+-.|   +.++
T Consensus       169 LWD~rTgt~v~sL-~~~s~Vt-----SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~S-ASL~P---~k~~  238 (334)
T KOG0278|consen  169 LWDHRTGTEVQSL-EFNSPVT-----SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVES-ASLHP---KKEF  238 (334)
T ss_pred             EEEeccCcEEEEE-ecCCCCc-----ceeeccCCCEEEEecCceeEEeccccccceeeccCcccccc-ccccC---CCce
Confidence            4666666544332 3332211     23466666 888888889999999  5665   45666543 33334   3477


Q ss_pred             eeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccce
Q 042769           76 VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYT  155 (549)
Q Consensus        76 v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~  155 (549)
                      ...|+.|..+|-.|-.||+.|-.|-...                              ..|  +      .-.=.+-|+-
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh------------------------------~gp--V------hcVrFSPdGE  280 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGH------------------------------FGP--V------HCVRFSPDGE  280 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCC------------------------------CCc--e------EEEEECCCCc
Confidence            7789999999999999999997763332                              010  0      1122356899


Q ss_pred             eecccCCCCCce-eeeeeehhhhhhhcc
Q 042769          156 LQSFEPNSDNVS-WSMTVAEIGYAFLCQ  182 (549)
Q Consensus       156 l~a~d~~~g~~~-Wn~~~~~~~a~~~~~  182 (549)
                      +||...++|.++ |.++.+.-.-.-.|.
T Consensus       281 ~yAsGSEDGTirlWQt~~~~~~~~~~~~  308 (334)
T KOG0278|consen  281 LYASGSEDGTIRLWQTTPGKTYGLWKCV  308 (334)
T ss_pred             eeeccCCCceEEEEEecCCCchhhcccc
Confidence            999999999887 999988655333333

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=91.17  E-value=0.062  Score=59.59  Aligned_cols=127  Identities=18%  Similarity=0.107  Sum_probs=71.9

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHH----------------------------------Hhh------hhHHHHH
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRA----------------------------------LHD------VAFKEIQ  452 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~----------------------------------~~~------~~~~Ei~  452 (549)
                      +.||.-+.|.|+.+....|+.||||+-++.                                  ..+      .+.+|.+
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            689999999998888888999999833321                                  000      1234443


Q ss_pred             H---HHhcCCCCC------eeEEeeeccCcceEEEEeccccc-chh--hhhhhcccCCcccccCchhhhHHhhhe-eecc
Q 042769          453 N---LIASDQHPN------IVRWYGVENDKDFVYLSLERCTC-SLD--DLIQTYSDSSCNSVFGEDQATRAMIEY-KLRL  519 (549)
Q Consensus       453 ~---L~~~l~HpN------IVrl~g~~~~~~~~yLVmE~~~G-sL~--~~L~~~~~~~~~~~l~~~~~~~i~~qi-L~yL  519 (549)
                      +   ..+.+.|-+      |.++|..+.  ....|+||||+| .+.  +.|.+       ..++...+...+.++ ++-|
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~s--t~RVLtME~~~G~~i~Dl~~i~~-------~gi~~~~i~~~l~~~~~~qI  317 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLS--TKRVLTMEYVDGIKINDLDAIDK-------RGISPHDILNKLVEAYLEQI  317 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcC--cceEEEEEecCCccCCCHHHHHH-------cCCCHHHHHHHHHHHHHHHH
Confidence            3   222334545      444443333  346799999987 332  44544       234555555555444 3334


Q ss_pred             cceeEEEeecc----cccc----CCCCchhhhhhhhc
Q 042769          520 DSVKVIIRDLS----LWKA----DGHPSPLLLSLMRL  548 (549)
Q Consensus       520 H~~~IIHRDLK----Ll~~----~G~p~~~l~~Lmrd  548 (549)
                      =..|++|.|-.    |+..    ++....++.+|++.
T Consensus       318 f~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~  354 (538)
T KOG1235|consen  318 FKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAV  354 (538)
T ss_pred             HhcCCccCCCCCCcEEEecCCCCCccEEEEccccccc
Confidence            45578888887    4543    33333334555543

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.92  E-value=0.24  Score=51.16  Aligned_cols=86  Identities=9%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             eeeEEEEEEccccceeeecCCCC--CCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeec
Q 042769           81 KTTTVFVLEAKTGRLIRTYGSPH--SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQS  158 (549)
Q Consensus        81 k~~~~~~vda~tG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a  158 (549)
                      .|+.++.||.+||+++|..++.+  ..+........   ...........+|+--+|.... ....+.|+=-|.-..|+.
T Consensus        94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~---~~~~g~~~~~~~D~~HiNsV~~-~~~G~yLiS~R~~~~i~~  169 (299)
T PF14269_consen   94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDP---LPGSGGSSSFPWDYFHINSVDK-DDDGDYLISSRNTSTIYK  169 (299)
T ss_pred             ecceeEEeccCCCCEEEEEEhhheeccccccccccc---ccCCCcCCCCCCCccEeeeeee-cCCccEEEEecccCEEEE
Confidence            46788999999999999998876  11111100000   0000001122233333332221 111244444566679999


Q ss_pred             ccCCCCCceeee
Q 042769          159 FEPNSDNVSWSM  170 (549)
Q Consensus       159 ~d~~~g~~~Wn~  170 (549)
                      +|+++|+++|.+
T Consensus       170 I~~~tG~I~W~l  181 (299)
T PF14269_consen  170 IDPSTGKIIWRL  181 (299)
T ss_pred             EECCCCcEEEEe
Confidence            999999999998

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.91  E-value=0.41  Score=45.86  Aligned_cols=108  Identities=14%  Similarity=0.169  Sum_probs=68.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      .++.++.||.++..|. .+.....+...+---.+-+.++|| .+++|+.++.+...|..+|+.+.++......       
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-------  221 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG-------  221 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc-------
Confidence            3555556999999998 566555555433222333445576 7888988999999999999988777432100       


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                           +..           ...++      ....++.+..|+.|+.+|..+++....+.
T Consensus       222 -----i~~-----------~~~~~------~~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         222 -----VNS-----------VAFSP------DGYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             -----eEE-----------EEEcC------CCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence                 000           00111      11455555569999999988887776665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=90.40  E-value=0.19  Score=53.51  Aligned_cols=114  Identities=9%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-eeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      +-+|..-.++++|..+|. +.+..-.+.+..-++.+.+.+.||. +|+.+.|+.+..||..|++++.+...+..+.++. 
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~-   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA-   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE-
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE-
Confidence            344556668999999998 5554445555555677788888885 9999999999999999999999988865211110 


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEc-ccceeecccCCCCCceeeeeeehhh
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR-TDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r-~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                                             .++.      ...||++. .+..|..+|.+|.++.=.+.++.+.
T Consensus        85 -----------------------~s~D------G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~  122 (369)
T PF02239_consen   85 -----------------------VSPD------GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP  122 (369)
T ss_dssp             -----------------------E--T------TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred             -----------------------EcCC------CCEEEEEecCCCceeEeccccccceeeccccccc
Confidence                                   1111      14677775 6889999999999999888777654

...

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=88.82  E-value=0.79  Score=43.86  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      .++.++.||.++..+. .+.....+...+.--.+-+..+++ .++.|+.++.++..|..+++.+..+......       
T Consensus        65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------  137 (289)
T cd00200          65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-------  137 (289)
T ss_pred             EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc-------
Confidence            4788888999999998 444444444322111222233344 4555666999999999999998887632200       


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ...                ...++.      ...++.+..|+.|+.+|.++++....+.
T Consensus       138 i~~----------------~~~~~~------~~~l~~~~~~~~i~i~d~~~~~~~~~~~  174 (289)
T cd00200         138 VNS----------------VAFSPD------GTFVASSSQDGTIKLWDLRTGKCVATLT  174 (289)
T ss_pred             EEE----------------EEEcCc------CCEEEEEcCCCcEEEEEccccccceeEe
Confidence            000                001111      1467777779999999998888877776

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=88.53  E-value=0.27  Score=51.77  Aligned_cols=163  Identities=15%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhh-h---hhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-Y---VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~---v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      ++-|+.|||||.+-..|. -+++.-..+... .   |+==|.   .|.|..||||..+=..|++||+-+  ++..+-.++
T Consensus       192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg~cl--~tlh~HKnt  266 (464)
T KOG0284|consen  192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSGSCL--ATLHGHKNT  266 (464)
T ss_pred             CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---cceeEEccCCceeEeecCCCcchh--hhhhhccce
Confidence            444999999999988776 444422212222 1   222232   568999999999999999999988  444331121


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhccccCCc
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENP  187 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~~~~~  187 (549)
                      +-          .           ...++     ++ +-|.-++.|..+++||-++=+++..+.--+-......=++-++
T Consensus       267 Vl----------~-----------~~f~~-----n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~  319 (464)
T KOG0284|consen  267 VL----------A-----------VKFNP-----NG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE  319 (464)
T ss_pred             EE----------E-----------EEEcC-----CC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence            11          0           00111     11 6788889999999999886676655442222222111122222


Q ss_pred             --ccccccccccccCcccccCCCccccc---cchhHHHHhhhccCCCC
Q 042769          188 --FIGATMNTSYELGPEIGHDFDLPFAC---QSKGIIQRFRKHNNSDS  230 (549)
Q Consensus       188 --~~~~~~~~~~~l~~~w~~~~~~p~~~---~~~~~~~~~~~~~l~~~  230 (549)
                        +..+..+++...   |......|+..   -+...|+.+.=+|+..+
T Consensus       320 ~lftsgg~Dgsvvh---~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhi  364 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVH---WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHI  364 (464)
T ss_pred             cceeeccCCCceEE---EeccccccccCCCcccccceeeeecccccee
Confidence              222233444333   55555556554   22333556666666544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.08  E-value=1.2  Score=44.16  Aligned_cols=147  Identities=14%  Similarity=0.212  Sum_probs=95.4

Q ss_pred             eeecCCcchhhhccc-cccccCCcch--hhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCC-ccccch
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSI--DDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS-STLQNE  111 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~--~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~-~~~~~~  111 (549)
                      -+.|+.|..+=-.++ .|...-.|+-  .|...+. ..+++..+-.|+-|..++.-|..||+.+++|...++- |++.  
T Consensus        32 ~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~-~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~--  108 (307)
T KOG0316|consen   32 CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA-LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR--  108 (307)
T ss_pred             EEEcCCCceEEeecccccceeeeecCCCceeeecc-ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE--
Confidence            388999988877777 6666444544  3333333 2343556778888999999999999999999998621 3222  


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhccccCC-cccc
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFEN-PFIG  190 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~~~~-~~~~  190 (549)
                                                 + +++..+|.=|+-|-++++.|-++....=--.+.+..+....++... .+..
T Consensus       109 ---------------------------f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva  160 (307)
T KOG0316|consen  109 ---------------------------F-NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA  160 (307)
T ss_pred             ---------------------------e-cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe
Confidence                                       2 1123578889999999999987776654445555555555554333 3455


Q ss_pred             cccccc---cccC--cccccCCCccccc
Q 042769          191 ATMNTS---YELG--PEIGHDFDLPFAC  213 (549)
Q Consensus       191 ~~~~~~---~~l~--~~w~~~~~~p~~~  213 (549)
                      +++++.   |.+.  -.-.-.|+.|+.|
T Consensus       161 GS~DGtvRtydiR~G~l~sDy~g~pit~  188 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDYFGHPITS  188 (307)
T ss_pred             eccCCcEEEEEeecceeehhhcCCccee
Confidence            556665   3332  1133347778887

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=86.90  E-value=1.2  Score=50.88  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=75.4

Q ss_pred             eeecCCcchhhhccc-cc---------cccCCcc-hhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCC
Q 042769           36 FIDCGEDWGLYAHGL-LG---------RMKLPQS-IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHS  104 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g---------~~~~~~~-~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~  104 (549)
                      ++.+..++.||..+. ++         .++..+. |..++|-+-++-   .|.+||.+|.+-..|-+||+++++|+--.+
T Consensus       127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLN---KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s  203 (910)
T KOG1539|consen  127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLN---KIVVGSSQGRLQLWNVRTGKVVYTFQEFFS  203 (910)
T ss_pred             EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhhee---eEEEeecCCcEEEEEeccCcEEEEeccccc
Confidence            466667777777766 32         1122222 444555555554   599999999999999999999999876542


Q ss_pred             CccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          105 SSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      .-|..  +                     ..| ..     ++|-||-.+|+|..+.-+.|+++-+|...
T Consensus       204 ~IT~i--e---------------------qsP-aL-----DVVaiG~~~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  204 RITAI--E---------------------QSP-AL-----DVVAIGLENGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             ceeEe--c---------------------cCC-cc-----eEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence            22111  0                     122 22     69999999999999999999999999875

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=86.81  E-value=0.18  Score=59.25  Aligned_cols=126  Identities=19%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.+.+-+-.|+++.++.. -..+|...+.|.....      ..+...++-..++. -.||-+++....+......+|+++
T Consensus       806 ~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~-p~~P~v~~~~~s~~~rsP~~L~~~  884 (1205)
T KOG0606|consen  806 FEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILIT-PRSPAVVRSFPSFPCRSPLPLVGH  884 (1205)
T ss_pred             ceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCcccc-CCCCceecccCCCCCCCCcchhhH
Confidence            777778999999997663 2334544455533321      12223333322222 256778877766667778999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      |++ ++|...|+.      .++.+.+-++.+...+   ++|||...++|||++    |...+|+-...
T Consensus       885 ~~~~~~~~Skl~~------~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~  946 (1205)
T KOG0606|consen  885 YLNGGDLPSKLHN------SGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLT  946 (1205)
T ss_pred             HhccCCchhhhhc------CCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccC
Confidence            998 599999987      4456666666666555   889999999999999    55666664433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=86.62  E-value=1.3  Score=47.73  Aligned_cols=115  Identities=10%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             eeeecCCcchhhhccc--cccccCCcchhhhhhcCCCcccccc-eeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL--LGRMKLPQSIDDYVKTAPHITEEGA-VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~--~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      +++.|+.|+-+|..+.  +|...=.|.-...--.+=+.+++|+ ...+|.|.++=.-|.+||+.+-+|.+..-+. |+  
T Consensus       229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cv--  305 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CV--  305 (503)
T ss_pred             EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-ee--
Confidence            3789999999999888  3555445555443333334566775 4557899999999999999999998864221 11  


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhccc
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQD  183 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~  183 (549)
                                        +   ..|..     ++++++|-.|+.|...|-++|++.     -+|...+-|+-
T Consensus       306 ------------------k---f~pd~-----~n~fl~G~sd~ki~~wDiRs~kvv-----qeYd~hLg~i~  346 (503)
T KOG0282|consen  306 ------------------K---FHPDN-----QNIFLVGGSDKKIRQWDIRSGKVV-----QEYDRHLGAIL  346 (503)
T ss_pred             ------------------e---cCCCC-----CcEEEEecCCCcEEEEeccchHHH-----HHHHhhhhhee
Confidence                              0   11111     379999999999999999999964     78888877763

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=86.49  E-value=0.52  Score=49.15  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=76.2

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHH--H-------Hh----------------hhhHHHHHHHHhcCCCCC-
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR--A-------LH----------------DVAFKEIQNLIASDQHPN-  462 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~--~-------~~----------------~~~~~Ei~~L~~~l~HpN-  462 (549)
                      +.+++.||=|.-+.||...-..|++.++|.=+.  .       ..                -.+.+|+..|.++-.|.. 
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfp  173 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFP  173 (465)
T ss_pred             hhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            556679999999998887778899999993221  1       00                024578866666544432 


Q ss_pred             eeEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhheeecccceeEEEeecc----ccccCCC
Q 042769          463 IVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       463 IVrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qiL~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +.+.+    +....++|||++.| -|.+.-+-         .....+..-+..++.-|-..|+||+|..    +++.++.
T Consensus       174 VPkpi----D~~RH~Vvmelv~g~Pl~~v~~v---------~d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~  240 (465)
T KOG2268|consen  174 VPKPI----DHNRHCVVMELVDGYPLRQVRHV---------EDPPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDK  240 (465)
T ss_pred             CCCcc----cccceeeHHHhhcccceeeeeec---------CChHHHHHHHHHHHHHHHHcCceecccchheeEEecCCC
Confidence            22333    33457899999987 66544221         1222333333334566778999999998    6777776


Q ss_pred             Cchhhh
Q 042769          538 PSPLLL  543 (549)
Q Consensus       538 p~~~l~  543 (549)
                      +....+
T Consensus       241 i~vIDF  246 (465)
T KOG2268|consen  241 IVVIDF  246 (465)
T ss_pred             EEEeec
Confidence            655443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=86.24  E-value=1.5  Score=45.74  Aligned_cols=104  Identities=14%  Similarity=0.162  Sum_probs=71.1

Q ss_pred             ceeeecCCcchhhhccc-c-ccccCCcchhhhhhcCCC----ccccc-ceeecceeeEEEEEEccccceeeecCCCCCCc
Q 042769           34 SFFIDCGEDWGLYAHGL-L-GRMKLPQSIDDYVKTAPH----ITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~-g~~~~~~~~~~~v~~sP~----~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      .+++.|++||++++... + +..|+-.-     +.+||    +..|| .+..|..|+++.+-|+|||.++.+.+..+.. 
T Consensus       161 ~illAG~~DGsvWmw~ip~~~~~kv~~G-----h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~-  234 (399)
T KOG0296|consen  161 HILLAGSTDGSVWMWQIPSQALCKVMSG-----HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL-  234 (399)
T ss_pred             cEEEeecCCCcEEEEECCCcceeeEecC-----CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccC-
Confidence            45799999999999887 4 33343221     44444    33456 4677888999999999999999777653200 


Q ss_pred             cccchhhhcccccccccchHHHHhhcc-CccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGL-TNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                             .               .|.. .+..      ..++.-|..|+.++-+...+|+++--..
T Consensus       235 -------~---------------~~~~~~~~~------~~~~~~g~~e~~~~~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  235 -------E---------------LPCISLNLA------GSTLTKGNSEGVACGVNNGSGKVVNCNN  272 (399)
T ss_pred             -------c---------------CCccccccc------cceeEeccCCccEEEEccccceEEEecC
Confidence                   0               0000 1111      2688999999999999999999985443

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=84.52  E-value=0.67  Score=41.11  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHH
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLI  455 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~  455 (549)
                      ..||.|+.|.||.+...+|+.||||+..+...+.+..++..|.
T Consensus        17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~i~~~i~~Dl~~l~   59 (119)
T PF03109_consen   17 EPLASASIAQVHRARLKDGEEVAVKVQRPGIEEQIEADLRILR   59 (119)
T ss_pred             chhhheehhhheeeeecccchhhhhhcchHHHHHHHHHHHHHH
Confidence            5899999999988888889999999998876666666665543

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=83.97  E-value=2.7  Score=41.64  Aligned_cols=107  Identities=15%  Similarity=0.106  Sum_probs=63.8

Q ss_pred             eecCCcchhhhccc-cccc--cCCcchhhh----h-hcCCCcccccce-eec-ceeeEEEEEEccccceeeecCCCCCCc
Q 042769           37 IDCGEDWGLYAHGL-LGRM--KLPQSIDDY----V-KTAPHITEEGAV-TLG-SKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        37 ~~~~~d~~ly~~~~-~g~~--~~~~~~~~~----v-~~sP~~~~dg~v-~~G-sk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      +.+..|+.++..|. +|..  .+.+..+..    + ....+++.||.. |++ ..++++..+|.++|+.+..........
T Consensus       173 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  252 (300)
T TIGR03866       173 VSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVW  252 (300)
T ss_pred             EEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcc
Confidence            34445888888887 5543  333332210    1 112234567753 553 345679999999999876543321000


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEE-cccceeecccCCCCCceeeeeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFIT-RTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~-r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      .                        -..+|..      ..||++ +.++.|..+|.++|+++..+.++
T Consensus       253 ~------------------------~~~~~~g------~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       253 Q------------------------LAFTPDE------KYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             e------------------------EEECCCC------CEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            0                        0012211      478886 56899999999999999888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=83.09  E-value=2.2  Score=42.56  Aligned_cols=135  Identities=16%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQK  114 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~  114 (549)
                      |+..++|+.+=..|- +|..--...+..-|.|.- +++||-+..=..-+++--.||++=+++..|.+|.          +
T Consensus       158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~----------n  226 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC----------N  226 (334)
T ss_pred             EEeeccCCceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEecCceeEEeccccccceeeccCcc----------c
Confidence            455567777777777 666644444455565555 4459977777777888889999999999999985          1


Q ss_pred             cccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhhhhhccccCCccccccc-
Q 042769          115 SASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATM-  193 (549)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a~~~~~~~~~~~~~~~~-  193 (549)
                                    +.++.+.|      +.+..+-|-.|..+|-+|=.||+++=.+.-+++.          |..-+.+ 
T Consensus       227 --------------V~SASL~P------~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g----------pVhcVrFS  276 (334)
T KOG0278|consen  227 --------------VESASLHP------KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG----------PVHCVRFS  276 (334)
T ss_pred             --------------cccccccC------CCceEEecCcceEEEEEeccCCceeeecccCCCC----------ceEEEEEC
Confidence                          11122333      2278888999999999999999999775445444          2222232 


Q ss_pred             -ccc-cccCcc------cccCCCccc
Q 042769          194 -NTS-YELGPE------IGHDFDLPF  211 (549)
Q Consensus       194 -~~~-~~l~~~------w~~~~~~p~  211 (549)
                       +++ |+.|.+      |+..-+.+.
T Consensus       277 PdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  277 PDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCCceeeccCCCceEEEEEecCCCch
Confidence             444 666643      877755554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.74  E-value=0.8  Score=45.25  Aligned_cols=113  Identities=14%  Similarity=0.187  Sum_probs=76.2

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      .--++.||-||.+=..|- .|.+---+= +..|- +-+++.|| -+.+|+-++++-.+|-.||+++..|.-..       
T Consensus       155 ~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit-~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk-------  225 (307)
T KOG0316|consen  155 EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPIT-SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK-------  225 (307)
T ss_pred             ccEEEeeccCCcEEEEEeecceeehhhc-CCcce-eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc-------
Confidence            334799999999988886 665532111 11121 12244466 57889999999999999999998887643       


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                                   +.+-++|.-+..       +...|+=|+.|+.||-.|-..+.+.=++.+..
T Consensus       226 -------------n~eykldc~l~q-------sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~  269 (307)
T KOG0316|consen  226 -------------NMEYKLDCCLNQ-------SDTHVFSGSEDGKVYFWDLVDETQISKLSVVS  269 (307)
T ss_pred             -------------cceeeeeeeecc-------cceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence                         222333333222       33678889999999999988887776665554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=82.03  E-value=2.2  Score=43.53  Aligned_cols=100  Identities=15%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      ..+.|+-||.+=.+|- .|..-.--+-++.|..==..-.+|.|..||||.++=..|+..-...-++..+.          
T Consensus        67 ~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k----------  136 (323)
T KOG1036|consen   67 TIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK----------  136 (323)
T ss_pred             eEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc----------
Confidence            3678888999888887 44443322333333221112236689999999999999997522222222211          


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCc
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNV  166 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~  166 (549)
                                    .+  +..+.      ..++|.+|..|-.+..+|-++=+.
T Consensus       137 --------------kV--y~~~v------~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen  137 --------------KV--YCMDV------SGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             --------------eE--EEEec------cCCEEEEeecCceEEEEEcccccc
Confidence                          00  00111      126899999999999998655443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=81.86  E-value=1.6  Score=47.81  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             eeeecCCcchhhhccc-cc-cccCCc-chhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCc-ccc
Q 042769           35 FFIDCGEDWGLYAHGL-LG-RMKLPQ-SIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS-TLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g-~~~~~~-~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~-~~~  109 (549)
                      .++.|++|..+...|. ++ ...-.+ .-..+| .+=+++.+| .|..||.|+++..=|.+||+.+.++....... ++.
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~  295 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA  295 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence            3688999999999997 33 332222 223445 444566677 89999999999999999999999888764211 000


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                                              .++      ....|..++.|+.|+..|..+|..+
T Consensus       296 ------------------------f~~------d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  296 ------------------------FSP------DGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             ------------------------ECC------CCCEEEEcCCCccEEEEECCCCcee
Confidence                                    111      1267888888999999999888844

>PLN02876 acyl-CoA dehydrogenase

Probab=81.57  E-value=0.74  Score=54.28  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=60.6

Q ss_pred             cccccccCCceEEEeeeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCe--eEEeeeccCc---ceEEEE
Q 042769          412 NTEIAKGSNGTVVYEGIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNI--VRWYGVENDK---DFVYLS  479 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNI--Vrl~g~~~~~---~~~yLV  479 (549)
                      .+.|+.|.+..+|+-....+   ..+++|+....    ......+|+..|..+-.|++|  .+++.+|.+.   +..|+|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            35678888888776322222   35666654321    123466888776665346554  7888887764   457899


Q ss_pred             ecccccc-hhhhhhhcccCCcccccCchhhhHHhhhe---eecccce
Q 042769          480 LERCTCS-LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV  522 (549)
Q Consensus       480 mE~~~Gs-L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~  522 (549)
                      |||++|. +.+-.        ...++......+..++   |..||..
T Consensus       123 ME~v~G~~~~~~~--------~~~~~~~~r~~l~~~l~~~La~LH~v  161 (822)
T PLN02876        123 MEYLEGRIFVDPK--------LPGVAPERRRAIYRATAKVLAALHSA  161 (822)
T ss_pred             EEecCCcccCCcc--------CCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9999984 32210        1123444445555555   6777764

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=81.56  E-value=0.74  Score=45.46  Aligned_cols=74  Identities=11%  Similarity=-0.019  Sum_probs=42.5

Q ss_pred             ccccCC-ceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc-chhh
Q 042769          415 IAKGSN-GTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDD  489 (549)
Q Consensus       415 LG~G~f-G~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G-sL~~  489 (549)
                      |-.|.+ ..||.... .+..+.||+..........+|++.+..+-.+--+.+++++....+..++|||+++| +|.+
T Consensus         6 ~~~g~~~~~v~~~~~-~~~~~~vk~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~   81 (244)
T cd05150           6 VTEGQSGATVYRLDG-KNPGLYLKIAPSGPTYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAA   81 (244)
T ss_pred             cCCCCCcCeEEEEcC-CCCcEEEEecCCCcccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhH
Confidence            344445 33343332 33566666554321224556776655443444566777777766678899999998 5543

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	549
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		2e-19
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		2e-19
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		1e-18
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		1e-18
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		2e-14

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 16/149 (10%)
Query: 397 RGGAQGR------------NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH 444
           RGG +GR            ++  L VS   +  GS+GTVV++G ++GRPVAVKR++    
Sbjct: 11  RGGKKGRKSRIANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC 70
Query: 445 DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFG 504
           D+A  EI+ L  SD HPN++R+Y  E    F+Y++LE C  +L DL+++ + S  N    
Sbjct: 71  DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQ 130
Query: 505 ED----QATRAMIEYKLRLDSVKVIIRDL 529
           ++       R +      L S+K+I RDL
Sbjct: 131 KEYNPISLLRQIASGVAHLHSLKIIHRDL 159

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 16/149 (10%)
Query: 397 RGGAQGR------------NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH 444
           RGG +GR            ++  L VS   +  GS+GTVV++G ++GRPVAVKR++    
Sbjct: 11  RGGKKGRKSRIANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC 70
Query: 445 DVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFG 504
           D+A  EI+ L  SD HPN++R+Y  E    F+Y++LE C  +L DL+++ + S  N    
Sbjct: 71  DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQ 130
Query: 505 ED----QATRAMIEYKLRLDSVKVIIRDL 529
           ++       R +      L S+K+I RDL
Sbjct: 131 KEYNPISLLRQIASGVAHLHSLKIIHRDL 159

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPN 462
           +++  L VS   +  GS+GTVV++G ++GRPVAVKR++    D+A  EI+ L  SD HPN
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPN 70
Query: 463 IVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGED----QATRAMIEYKLR 518
           ++R+Y  E    F+Y++LE C  +L DL+++ + S  N    ++       R +      
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAH 130
Query: 519 LDSVKVIIRDL 529
           L S+K+I RDL
Sbjct: 131 LHSLKIIHRDL 141

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPN 462
           +++  L VS   +  GS+GTVV++G ++GRPVAVKR++    D+A  EI+ L  SD HPN
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPN 70
Query: 463 IVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGED----QATRAMIEYKLR 518
           ++R+Y  E    F+Y++LE C  +L DL+++ + S  N    ++       R +      
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAH 130
Query: 519 LDSVKVIIRDL 529
           L S+K+I RDL
Sbjct: 131 LHSLKIIHRDL 141

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 405 VGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
           VGK+ F     +  G+ GT+VY G+++ R VAVKR++      A +E+Q L  SD+HPN+
Sbjct: 21  VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNV 80
Query: 464 VRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           +R++  E D+ F Y+++E C  +L + ++
Sbjct: 81  IRYFCTEKDRQFQYIAIELCAATLQEYVE 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	549
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-33
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-31
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	6e-13
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	9e-10
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-09
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	3e-09
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-08
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	7e-08
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-07
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-07
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-07
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-07
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-07
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-07
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-07
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	6e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-06
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	6e-06
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	8e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-06
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	9e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-05
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-05
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-05
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-05
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-05
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-05
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-05
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-05
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-05
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-05
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-05
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	5e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	5e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	5e-05
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	7e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-05
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	9e-05
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-04
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-04
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-04
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-04
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-04
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-04
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	7e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	7e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	8e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	9e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	9e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	9e-04

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  131 bits (332), Expect = 1e-33
 Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 10/134 (7%)

Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPN 462
           +++  L VS   +  GS+GTVV++G ++GRPVAVKR++    D+A  EI+ L  SD HPN
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPN 70

Query: 463 IVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSS-CNSVFGEDQATRAM------IEY 515
           ++R+Y  E    F+Y++LE C  +L DL+++ + S     +  E      +      + +
Sbjct: 71  VIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAH 130

Query: 516 KLRLDSVKVIIRDL 529
              L S+K+I RDL
Sbjct: 131 ---LHSLKIIHRDL 141

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  126 bits (317), Expect = 1e-31
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 15/136 (11%)

Query: 401 QGRNVGKL-FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQ 459
               VGK+ F     +  G+ GT+VY G+++ R VAVKR++      A +E+Q L  SD+
Sbjct: 17  SVVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDE 76

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAM------I 513
           HPN++R++  E D+ F Y+++E C  +L + ++    +         +    +      +
Sbjct: 77  HPNVIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFA-----HLGLEPITLLQQTTSGL 131

Query: 514 EYKLRLDSVKVIIRDL 529
            +   L S+ ++ RDL
Sbjct: 132 AH---LHSLNIVHRDL 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 3e-14
 Identities = 78/559 (13%), Positives = 152/559 (27%), Gaps = 139/559 (24%)

Query: 13  SSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLLGRMKL---PQSIDDY-VKTAP 68
              Q  V+  V + N   L +    +  +   +    +  R +L    Q    Y V    
Sbjct: 77  EMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 69  HITE----------EGAVTL----GS-KTTTVFVLEA-KTGRLIR---------TYGSPH 103
              +             V +    GS KT     L+   + ++              + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 104 SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL-FITRTDYTLQSFEPN 162
           S  T+  E  +   Y+ D  N              +   +  L   +    Y       N
Sbjct: 194 SPETVL-EMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------EN 245

Query: 163 S----DNVSWSMTVAEIGYAFL--CQ------DFENPFIGATMNTSYELGPEIGHDFDLP 210
                 NV  +        AF   C+        +     +   T++             
Sbjct: 246 CLLVLLNV-QNAKAWN---AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 211 FACQSKGIIQRFRKHNNSDSSRRDNHGKP---KMLPAPAPDPMA----FMQPKADKLSEL 263
              + K ++ ++      D  R      P    ++     D +A    +     DKL+ +
Sbjct: 302 ---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 264 HHNDGGEGVLTLPPLETRVSGIVDAY--------DVRTPYKNVLSMLFEQSTALSLLLLA 315
             +     +  L P E R       +            P   +LS+++            
Sbjct: 359 IESS----LNVLEPAEYR-----KMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSD----V 404

Query: 316 MTVVGFVVRNSLVAKG-----------QFLLSGHPSLSNS--RTAASKRKKVCKLGKNGA 362
           M VV  + + SLV K               L        +  R+             +  
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 363 VVE--------------KKVENMSSGNENGFSISKDASDPFLDL----NKLVRGGAQGRN 404
           +                K +E+        F         FLD      K+         
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEH--PERMTLFR------MVFLDFRFLEQKIRHDSTAWNA 516

Query: 405 VGKLFVSNTEIAKGSNGTVVYEG-IYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNI 463
            G +  +  ++         Y+  I +  P   +RLV A+ D   K  +NLI S  + ++
Sbjct: 517 SGSILNTLQQLKF-------YKPYICDNDP-KYERLVNAILDFLPKIEENLICSK-YTDL 567

Query: 464 VRWYGVENDKDFVYLSLER 482
           +R   +  + + ++    +
Sbjct: 568 LR-IALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 89/575 (15%), Positives = 166/575 (28%), Gaps = 170/575 (29%)

Query: 58  QSIDDYVKTA------PHITEEGAVTLGSKTTTVF-VLEAKTGRLIRTYGSPHSSSTLQN 110
           + + D  K+        HI         S T  +F  L +K   +++ +        ++ 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAV--SGTLRLFWTLLSKQEEMVQKF--------VEE 85

Query: 111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM 170
             + +  +    +  EQ   S +T          Y+    R     Q F     NVS   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMT--------RMYIEQRDRLYNDNQVFAK--YNVSRLQ 135

Query: 171 TVAEIGYAFLCQDFENPFI------GA-----TMNTSYELGPEIGHDFD---LPFA-CQS 215
              ++  A L +      +      G+      ++       +   DF    L    C S
Sbjct: 136 PYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 216 KG----IIQRFRKHNNSDSSRRDNHGKPKMLPAPAPDPMAFMQPKADKLSELHHNDGGEG 271
                 ++Q+     + + + R +H       +     +  +Q +  +L  L        
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDH------SSNIKLRIHSIQAELRRL--LKSKPYENC 246

Query: 272 VLTLPPLETRVSGIVDAYDVR------TPYKNVLSMLFEQSTALSLLLLAMTVVGFVVRN 325
           +L L  L  + +   +A+++       T +K V   L   +T  + + L    +      
Sbjct: 247 LLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDE 302

Query: 326 S--LVAKGQFL-----------LSGHPSLSNSRTAASKRKKVC-----------KLGKNG 361
              L+ K  +L           L+ +P    S  A S R  +            KL    
Sbjct: 303 VKSLLLK--YLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTT-- 357

Query: 362 AVVEKKVENMSSGNE----NGFSI-SKDA----------------SDPFLDLNKLVRGGA 400
            ++E  +  +         +  S+    A                SD  + +NKL +   
Sbjct: 358 -IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 401 QGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQ- 459
                         + K    + +                  +  +  +    L      
Sbjct: 417 --------------VEKQPKESTIS-----------------IPSIYLELKVKLENEYAL 445

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFG-----EDQATRAMIE 514
           H +IV  Y           ++ +   S DDLI  Y D    S  G      +   R  + 
Sbjct: 446 HRSIVDHY-----------NIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 515 YKLRLD----SVKVIIRDLSLWKADGHPSPLLLSL 545
             + LD      K I  D + W A G     L  L
Sbjct: 494 RMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQL 527

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339

 Score = 69.0 bits (168), Expect = 6e-13
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 40/188 (21%)

Query: 3   WTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLL-GRMKLPQSID 61
           W+                  + + +  E   +  I+   D  +Y      G  KLP SI 
Sbjct: 34  WSIEPEN-------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86

Query: 62  DYVKTAP-------------HITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL 108
             V T+P              I E+  V  GS  T ++ +    G +I  +G    +   
Sbjct: 87  QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYF 146

Query: 109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSW 168
            ++    +  +  K+   +                  ++ I +T + L     + D  S+
Sbjct: 147 GSQSVDCSPEEKIKLQECE-----------------NMIVIGKTIFELGIH--SYDGASY 187

Query: 169 SMTVAEIG 176
           ++T +   
Sbjct: 188 NVTYSTWQ 195

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHDV-----AFKEIQNLIASDQHPNIVRW 466
            +  GS G V ++     +GR  AVKR +              E+ +     QHP  VR 
Sbjct: 64  RLGHGSYGEV-FKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRL 122

Query: 467 YGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVK 523
                +   +YL  E C  SL    + +      +   E Q    + +  L L    S  
Sbjct: 123 EQAWEEGGILYLQTELCGPSLQQHCEAW-----GASLPEAQVWGYLRDTLLALAHLHSQG 177

Query: 524 VIIRDL 529
           ++  D+
Sbjct: 178 LVHLDV 183

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHDV-----AFKEIQNLIASDQHPNIVRW 466
           +I  G  G+V ++ +   +G   A+KR  + L        A +E+       QH ++VR+
Sbjct: 18  KIGSGEFGSV-FKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRY 76

Query: 467 YGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQ 507
           +    + D + +  E C   SL D I         S F E +
Sbjct: 77  FSAWAEDDHMLIQNEYCNGGSLADAISENYRI--MSYFKEAE 116

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 43/209 (20%), Positives = 70/209 (33%), Gaps = 40/209 (19%)

Query: 336 SGHPSLSNSRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKL 395
           SG  S   + + AS  K                 +  S          + ++  L   KL
Sbjct: 2   SGSVSSGQAHSLASLAK---------------TWSSGSAKLQRLGPETEDNEGVLLTEKL 46

Query: 396 VRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN 453
                + R           + +GS G V +    +  G   AVK++   L     +E+  
Sbjct: 47  KPVDYEYREEVHWMTHQPRVGRGSFGEV-HRMKDKQTGFQCAVKKV--RLEVFRVEEL-V 102

Query: 454 LIASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQA---T 509
             A    P IV  YG   +  +V + +E     SL  LI+            ED+A    
Sbjct: 103 ACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQM------GCLPEDRALYYL 156

Query: 510 RAM---IEYKLRLDSVKVIIRDLSLWKAD 535
                 +EY   L + +++  D+   KAD
Sbjct: 157 GQALEGLEY---LHTRRILHGDV---KAD 179

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 50/184 (27%)

Query: 3   WTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGLL---GRMKLPQS 59
           WT      +           V++        +F  D   D  LY  G     G  KLP +
Sbjct: 33  WTLKEDPVLQVP------THVEEP-------AFLPDP-NDGSLYTLGSKNNEGLTKLPFT 78

Query: 60  IDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYK 119
           I + V+ +P  + +G + +G K    +V++  TG   +T  S  + S   +         
Sbjct: 79  IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTS------- 131

Query: 120 HDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGYAF 179
                                     LL++ RT+YT+  ++  +  + W+ T  +   + 
Sbjct: 132 --------------------------LLYLGRTEYTITMYDTKTRELRWNATYFDYAASL 165

Query: 180 LCQD 183
              D
Sbjct: 166 PEDD 169

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF-KEIQNLIASDQHPNIVRWYGV 469
            + +G+ G V  +  +  + VA+K++       AF  E++ L +   HPNIV+ YG 
Sbjct: 15  VVGRGAFGVV-CKAKWRAKDVAIKQIESESERKAFIVELRQL-SRVNHPNIVKLYGA 69

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 16/90 (17%)

Query: 415 IAKGSNGTVVYEGI--YEGRPVAVK-------RLVRALHDVAFKEIQNLIASDQHPNIVR 465
           + KG+ G V Y G        +A+K       R  + LH    +EI  L    +H NIV+
Sbjct: 30  LGKGTYGIV-YAGRDLSNQVRIAIKEIPERDSRYSQPLH----EEI-ALHKHLKHKNIVQ 83

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTY 494
           + G  ++  F+ + +E+    SL  L+++ 
Sbjct: 84  YLGSFSENGFIKIFMEQVPGGSLSALLRSK 113

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQN------LIASDQHPNIVRWY 467
            I  G  G V Y   + G  VAVK       +   + I+N      L A  +HPNI+   
Sbjct: 14  IIGIGGFGKV-YRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72

Query: 468 GVENDKDFVYLSLERCTC-SLDDLIQ 492
           GV   +  + L +E      L+ ++ 
Sbjct: 73  GVCLKEPNLCLVMEFARGGPLNRVLS 98

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIV 464
            L + +  + +GS   +  + +     +  AVK + + +     KEI  L   + HPNIV
Sbjct: 11  DLDLKDKPLGEGSFS-ICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIV 69

Query: 465 RWYGVENDKDFVYLSLERCT 484
           + + V +D+   +L +E   
Sbjct: 70  KLHEVFHDQLHTFLVMELLN 89

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRL-VRALHDVAFKEIQN---LIASDQHPNIVRWYGV 469
           +I  GS GTV +   + G  VAVK L  +  H     E      ++   +HPNIV + G 
Sbjct: 44  KIGAGSFGTV-HRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGA 102

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 41/176 (23%), Positives = 60/176 (34%), Gaps = 35/176 (19%)

Query: 381 ISKDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLV 440
           +   AS+P LDL+ L                   I +G  G V Y+G  + RPVAVK   
Sbjct: 1   MEAAASEPSLDLDNLKLL--------------ELIGRGRYGAV-YKGSLDERPVAVKVFS 45

Query: 441 RALHD--VAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC-------SLDDLI 491
            A     +  K I  +    +H NI R+   +  +      +E           SL   +
Sbjct: 46  FANRQNFINEKNIYRV-PLMEHDNIARFIVGDE-RVTADGRMEYLLVMEYYPNGSLXKYL 103

Query: 492 QTYSDSSCNSVFGEDQATRAM----IEYKLRLDSVKVII-RDLS----LWKADGHP 538
             ++    +S       TR +     E          I  RDL+    L K DG  
Sbjct: 104 SLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTC 159

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 413 TEIAKGSNGTVVYEGIYEGRPVAVKRL-VRALHDVAFKEIQN---LIASDQHPNIVRWYG 468
           T++ +  +G + ++G ++G  + VK L VR       ++       +    HPN++   G
Sbjct: 16  TKLNENHSGEL-WKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLG 74

Query: 469 VENDKDFVYLSL 480
                   + +L
Sbjct: 75  ACQSPPAPHPTL 86

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF---KEIQNLIASDQHPNIVRWYGVE 470
           +I KG  G V + G + G  VAVK       + ++    EI   +   +H NI+ +   +
Sbjct: 44  QIGKGRYGEV-WMGKWRGEKVAVKVF-FTTEEASWFRETEIYQTVLM-RHENILGFIAAD 100

Query: 471 ND 472
             
Sbjct: 101 IK 102

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEN 471
           +I  GS   V    I++      AVK + ++  D   +EI+ L+   QHPNI+    V +
Sbjct: 29  DIGVGSYS-VCKRCIHKATNMEFAVKIIDKSKRDP-TEEIEILLRYGQHPNIITLKDVYD 86

Query: 472 DKDFVYLSLERCT 484
           D  +VY+  E   
Sbjct: 87  DGKYVYVVTELMK 99

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 415 IAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF--KEIQNLIASDQHPNIVRWYGVEND 472
           I KG  G V + G + G  VAVK          F   EI       +H NI+ +   +N 
Sbjct: 50  IGKGRFGEV-WRGKWRGEEVAVKIFSSREERSWFREAEIYQT-VMLRHENILGFIAADNK 107

Query: 473 KD 474
            +
Sbjct: 108 DN 109

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 415 IAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAF---KEIQNLIASDQHPNIVRWYGVEN 471
           + KG  G V + G ++G  VAVK    +  + ++    E+ N +   +H NI+ +   + 
Sbjct: 16  VGKGRYGEV-WRGSWQGENVAVKIF-SSRDEKSWFRETELYNTVML-RHENILGFIASDM 72

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 399 GAQGRNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVK----RLVRALHDVAFKEIQN 453
           G+   ++ + +     I +GS G V            A K      V  +     +EI+ 
Sbjct: 1   GSTKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRF-KQEIEI 59

Query: 454 LIASDQHPNIVRWYGVENDKDFVYLSLERCT 484
           + + D HPNI+R Y    D   +YL +E CT
Sbjct: 60  MKSLD-HPNIIRLYETFEDNTDIYLVMELCT 89

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 412 NTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDVAFKEIQNLIA------SDQHPNI 463
           + EI +GS  TV Y+G+       VA   L      +   E Q            QHPNI
Sbjct: 31  DIEIGRGSFKTV-YKGLDTETTVEVAWCEL--QDRKLTKSERQRFKEEAEMLKGLQHPNI 87

Query: 464 VR----WYGVENDKDFVYLSLERCTC-SLDDLIQTY 494
           VR    W      K  + L  E  T  +L   ++ +
Sbjct: 88  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF 123

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 16/128 (12%)

Query: 414 EIAKGSNGTVV-YEGIYEGRPVAVKRL-------VRALHDVAFKEIQNLIASDQHPNIVR 465
           +I +G    V     + +G PVA+K++        +A  D   KEI +L+    HPN+++
Sbjct: 39  KIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARAD-CIKEI-DLLKQLNHPNVIK 96

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---S 521
           +Y    + + + + LE      L  +I+ +       +  E    +  ++    L+   S
Sbjct: 97  YYASFIEDNELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTVWKYFVQLCSALEHMHS 154

Query: 522 VKVIIRDL 529
            +V+ RD+
Sbjct: 155 RRVMHRDI 162

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 371 MSSGNENGFSISKDASDPF-LDLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIY 429
           M  G+ +    S+DA+D + +   ++  G                I  GS GTV Y+G +
Sbjct: 1   MKKGHHHHHHGSRDAADDWEIPDGQITVG--------------QRIGSGSFGTV-YKGKW 45

Query: 430 EGRPVAVKRL----VRALHDVAFK-EIQNLIASDQHPNIVRWYGV 469
            G  VAVK L           AFK E+  L    +H NI+ + G 
Sbjct: 46  HG-DVAVKMLNVTAPTPQQLQAFKNEVGVL-RKTRHVNILLFMGY 88

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVK-----RLVRALHDVAFKEIQNLIAS 457
            +  LF+   ++  G+ G V   E    G    +K     R    +  +   EI+ L + 
Sbjct: 19  TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQI-EAEIEVLKSL 77

Query: 458 DQHPNIVRWYGVENDKDFVYLSLERCTCS--LDDLIQTYSDSSCNSVFGEDQATRAM--- 512
           D HPNI++ + V  D   +Y+ +E C     L+ ++   +         E      M   
Sbjct: 78  D-HPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKA---LSEGYVAELMKQM 133

Query: 513 ---IEYKLRLDSVKVIIRDL 529
              + Y     S  V+ +DL
Sbjct: 134 MNALAY---FHSQHVVHKDL 150

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 13/113 (11%)

Query: 424 VYEGIYEGRPVAVKRLVRALHDVAF-KEIQNLIASDQHPNIVRWYGV-ENDKDFVYLSLE 481
           V  G Y G  VAVK +       AF  E   +    +H N+V+  GV   +K  +Y+  E
Sbjct: 209 VMLGDYRGNKVAVKCIKNDATAQAFLAEASVM-TQLRHSNLVQLLGVIVEEKGGLYIVTE 267

Query: 482 RCTC-SLDDLIQTYSDSSCNSV----FGEDQATRAMIEYKLRLDSVKVIIRDL 529
                SL D +++   S         F       AM EY   L+    + RDL
Sbjct: 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSL-DVCEAM-EY---LEGNNFVHRDL 315

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 25/123 (20%)

Query: 424 VYEG--IYEGRPVAVKRLVRAL---HDVAFK---EIQNLIASDQHPNIVRWYGVENDKDF 475
            +E          A K + ++L        K   EI     S  H ++V ++G   D DF
Sbjct: 31  CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH-RSLAHQHVVGFHGFFEDNDF 89

Query: 476 VYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDSVKVIIRD 528
           V++ LE C   SL +L +            E +A   +       +Y   L   +VI RD
Sbjct: 90  VFVVLELCRRRSLLELHKR------RKALTEPEARYYLRQIVLGCQY---LHRNRVIHRD 140

Query: 529 LSL 531
           L L
Sbjct: 141 LKL 143

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 12/67 (17%)

Query: 414 EIAKGSNGTVVYEGIYEGR--PVAVKRLV------RALHDVAFKEIQN---LIASDQHPN 462
           +I KG  G V ++G        VA+K L+             F+E Q    ++++  HPN
Sbjct: 26  QIGKGGFGLV-HKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84

Query: 463 IVRWYGV 469
           IV+ YG+
Sbjct: 85  IVKLYGL 91

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 414 EIAKGSNGTVV-YEGIYEGRPVAVKRLVRALHDVAFKEIQN------LIASDQHPNIVRW 466
           +I +GS G  +  +   +GR   +K +   +  ++ KE +       ++A+ +HPNIV++
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEI--NISRMSSKEREESRREVAVLANMKHPNIVQY 88

Query: 467 YGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SV 522
                +   +Y+ ++ C    L   I     +    +F EDQ     ++  L L      
Sbjct: 89  RESFEENGSLYIVMDYCEGGDLFKRIN----AQKGVLFQEDQILDWFVQICLALKHVHDR 144

Query: 523 KVIIRDL 529
           K++ RD+
Sbjct: 145 KILHRDI 151

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 417 KGSNGTVVYEGI--YEGRPVAVKRLV-RALHDVA--FKEIQNLIASDQHPNIVRWYGVEN 471
           +G++   V   I     +  AVK +  +  H  +  F+E++ L     H N++       
Sbjct: 23  EGAHA-RVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE 81

Query: 472 DKDFVYLSLERCT 484
           ++D  YL  E+  
Sbjct: 82  EEDRFYLVFEKMR 94

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 29/144 (20%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKR--LVRALHDVAFKEIQNLI---ASDQ 459
           KLF    EI  GS G V Y          VA+K+        +  +++I   +      +
Sbjct: 54  KLFSDLREIGHGSFGAV-YFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 112

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR- 518
           HPN +++ G    +   +L +E C  S  DL++            E +     I      
Sbjct: 113 HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-----HKKPLQEVE-----IAAVTHG 162

Query: 519 -------LDSVKVIIRDLSLWKAD 535
                  L S  +I RD+   KA 
Sbjct: 163 ALQGLAYLHSHNMIHRDV---KAG 183

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 15/85 (17%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK------------RLVRALHDVAFKEIQNLIASDQ 459
            + +G +  VV   I++   +  AVK              V+ L +   KE+  L     
Sbjct: 24  ILGRGVSS-VVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSG 82

Query: 460 HPNIVRWYGVENDKDFVYLSLERCT 484
           HPNI++         F +L  +   
Sbjct: 83  HPNIIQLKDTYETNTFFFLVFDLMK 107

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 415 IAKGSNGTVVYEGIYEGRPVAVKRL-VRALHDVAF-KEIQNLIASDQHPNIVRWYGVEND 472
            A+G  G V ++       VAVK   ++         E+ +L    +H NI+++ G E  
Sbjct: 32  KARGRFGCV-WKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGM-KHENILQFIGAEKR 89

Query: 473 KDFVYLSLERCTC-----SLDDLIQ 492
              V + L   T      SL D ++
Sbjct: 90  GTSVDVDLWLITAFHEKGSLSDFLK 114

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 25/123 (20%)

Query: 424 VYEG--IYEGRPVAVKRLVRAL---HDVAFK---EIQNLIASDQHPNIVRWYGVENDKDF 475
            +E          A K + ++L        K   EI     S  H ++V ++G   D DF
Sbjct: 57  CFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH-RSLAHQHVVGFHGFFEDNDF 115

Query: 476 VYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDSVKVIIRD 528
           V++ LE C   SL +L +            E +A   +       +Y   L   +VI RD
Sbjct: 116 VFVVLELCRRRSLLELHKR------RKALTEPEARYYLRQIVLGCQY---LHRNRVIHRD 166

Query: 529 LSL 531
           L L
Sbjct: 167 LKL 169

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 14/154 (9%)

Query: 344 SRTAASKRKKVCKLGKNGAVVEKKVENMSSGNENGFSISKDASDPFLDLNKLVRGGAQGR 403
           +     +R  +  L  + +     +      N+     +++     +     +   A  +
Sbjct: 31  NLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAK 90

Query: 404 NVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVK-----------RLVRALHDVAFKE 450
              + +     I +G +  VV   ++   G   AVK             +  + +   +E
Sbjct: 91  EFYQKYDPKDVIGRGVSS-VVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRE 149

Query: 451 IQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT 484
              L     HP+I+          F++L  +   
Sbjct: 150 THILRQVAGHPHIITLIDSYESSSFMFLVFDLMR 183

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 401 QGRNVGKLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDVAFKEIQNLIASD 458
           +   +    V++  +  G NG  V +          A+K L       A +E++    + 
Sbjct: 12  KNAIIDDYKVTSQVLGLGING-KVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRAS 68

Query: 459 QHPNIVRWYGV----ENDKDFVYLSLERCT 484
           Q P+IVR   V       +  + + +E   
Sbjct: 69  QCPHIVRIVDVYENLYAGRKCLLIVMECLD 98

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK----RLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
            + +G+    V+ G ++  G   A+K           DV  +E + L   + H NIV+ +
Sbjct: 16  ILGQGATA-NVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN-HKNIVKLF 73

Query: 468 GVEND--KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLR 518
            +E +       L +E C C SL  +++  S++       E +    +      + +   
Sbjct: 74  AIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYG---LPESEFLIVLRDVVGGMNH--- 127

Query: 519 LDSVKVIIRDL 529
           L    ++ R++
Sbjct: 128 LRENGIVHRNI 138

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 35/158 (22%)

Query: 398 GGAQGRNVGKLFVSNT-------------EIAKGSNGTVVYEGIYE--GRPVAVKRLVRA 442
            G+ G+  G L +                E+  G+ G V ++  +   G  +AVK++ R+
Sbjct: 3   SGSSGKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQV-WKMRFRKTGHVIAVKQMRRS 61

Query: 443 LHDVAFKEIQN----LIASDQHPNIVRWYG---VENDKDFVYLSLERCTCSLDDLIQTYS 495
            +    K I      ++ S   P IV+ +G      D   V++++E      + L +   
Sbjct: 62  GNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTD---VFIAMELMGTCAEKLKKRMQ 118

Query: 496 DSSCNSVFGEDQATRAMIEYKLRLD----SVKVIIRDL 529
                    E    +  +     L        VI RD+
Sbjct: 119 G-----PIPERILGKMTVAIVKALYYLKEKHGVIHRDV 151

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 31/143 (21%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLI---ASDQHP 461
           ++F    ++ +GS G+V Y+ I++  G+ VA+K++   +     +EI   I        P
Sbjct: 29  EVFDVLEKLGEGSYGSV-YKAIHKETGQIVAIKQV--PVES-DLQEIIKEISIMQQCDSP 84

Query: 462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR-- 518
           ++V++YG       +++ +E C   S+ D+I+       N    ED+     I   L+  
Sbjct: 85  HVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRL-----RNKTLTEDE-----IATILQST 134

Query: 519 ------LDSVKVIIRDLSLWKAD 535
                 L  ++ I RD+   KA 
Sbjct: 135 LKGLEYLHFMRKIHRDI---KAG 154

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 25/132 (18%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVA-----FKEIQNLIASDQHPNIVRW 466
           E+ +G+ G V  +  +   G+ +AVKR +RA  +         ++   + +   P  V +
Sbjct: 14  ELGRGAYGVV-EKMRHVPSGQIMAVKR-IRATVNSQEQKRLLMDLDISMRTVDCPFTVTF 71

Query: 467 YG---VENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA---TRAMI---EYKL 517
           YG    E D   V++ +E    SLD   +   D        ED       +++   E+ L
Sbjct: 72  YGALFREGD---VWICMELMDTSLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEH-L 125

Query: 518 RLDSVKVIIRDL 529
               + VI RD+
Sbjct: 126 H-SKLSVIHRDV 136

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 415 IAKGSNGTVVYEGIYE--GRPVAVK----RLVRALHDVAFKEIQNLIASDQHPNIVRWYG 468
           + +G+    V+ G ++  G   A+K           DV  +E + L   + H NIV+ + 
Sbjct: 17  LGQGATA-NVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLN-HKNIVKLFA 74

Query: 469 VEND--KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRL 519
           +E +       L +E C C SL  +++  S++       E +    +      + +   L
Sbjct: 75  IEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYG---LPESEFLIVLRDVVGGMNH---L 128

Query: 520 DSVKVIIRDL 529
               ++ R++
Sbjct: 129 RENGIVHRNI 138

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHD----VAFK-EIQNLIASDQHPNIVRWYG 468
            I KG  G V Y G + G  VA++ +     +     AFK E+       +H N+V + G
Sbjct: 40  LIGKGRFGQV-YHGRWHG-EVAIRLIDIERDNEDQLKAFKREVMAY-RQTRHENVVLFMG 96

Query: 469 V 469
            
Sbjct: 97  A 97

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 406 GKLFVSNTEIAKGSNGTVVYEGIYE-GRPVAVKRLVRALHDVAFKEIQNL---IA----- 456
           G+++    +I  G +   V++ + E  +  A+K +   L +   + + +    IA     
Sbjct: 8   GRIYSILKQIGSGGSS-KVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKL 64

Query: 457 SDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTY 494
                 I+R Y  E    ++Y+ +E     L+  ++  
Sbjct: 65  QQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK 102

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN----LIASDQHPNIVRWY 467
           EI +G+ G+V  + +++  G+ +AVKR+   + +   K++      ++ S   P IV++Y
Sbjct: 29  EIGRGAYGSV-NKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFY 87

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQ 507
           G    +   ++ +E  + S D   +       + V  E+ 
Sbjct: 88  GALFREGDCWICMELMSTSFDKFYKYVYS-VLDDVIPEEI 126

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 399 GAQGRNVGKLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVK-----RLVRALHDVAFKEI 451
            ++  ++ +++    ++  G+ G  V            A+K      +  + +    +E+
Sbjct: 29  TSKKGHLSEMYQRVKKLGSGAYG-EVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEV 87

Query: 452 QNLIASDQHPNIVRWYGVENDKDFVYLSLERCT 484
             L   D HPNI++ Y    DK   YL +E   
Sbjct: 88  AVLKLLD-HPNIMKLYDFFEDKRNYYLVMECYK 119

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 15/129 (11%)

Query: 414 EIAKGSNGTVVYEGIY-------EGRPVAVKRLVRALH--DVAFKEIQNLIASDQHPNIV 464
            + +G+   V YE            +   +K    A         ++   +        +
Sbjct: 72  LLGEGAFAQV-YEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFM 130

Query: 465 RWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD--- 520
           ++Y     ++   L  E  +  +L + I  Y ++    V  +       +     ++   
Sbjct: 131 KFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTP-EKVMPQGLVISFAMRMLYMIEQVH 189

Query: 521 SVKVIIRDL 529
             ++I  D+
Sbjct: 190 DCEIIHGDI 198

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 28/125 (22%)

Query: 424 VYEG--IYEGRPVAVKRLVRAL---HDVAFK-----EIQNLIASDQHPNIVRWYGVENDK 473
           VY    I+ G  VA+K + +       +  +     +I   +   +HP+I+  Y    D 
Sbjct: 27  VYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL---KHPSILELYNYFEDS 83

Query: 474 DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLDSVKVII 526
           ++VYL LE C    ++  ++          F E++A   M      + Y   L S  ++ 
Sbjct: 84  NYVYLVLEMCHNGEMNRYLKNR-----VKPFSENEARHFMHQIITGMLY---LHSHGILH 135

Query: 527 RDLSL 531
           RDL+L
Sbjct: 136 RDLTL 140

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 23/133 (17%)

Query: 410 VSNTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
           +S   +  G NG  V E      G+  A+K L  +    A +E+ +   +   P+IV   
Sbjct: 32  LSKQVLGLGVNG-KVLECFHRRTGQKCALKLLYDS--PKARQEVDHHWQASGGPHIVCIL 88

Query: 468 GV----ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IEYK 516
            V     + K  + + +E      L   IQ   D +    F E +A   M      I++ 
Sbjct: 89  DVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQA----FTEREAAEIMRDIGTAIQF- 143

Query: 517 LRLDSVKVIIRDL 529
             L S  +  RD+
Sbjct: 144 --LHSHNIAHRDV 154

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVK-----RLVRALHDVAFKEIQNLI 455
               + +     + KGS G  V +       +  AVK                +E++ L 
Sbjct: 18  GTFAERYNIVCMLGKGSFG-EVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLK 76

Query: 456 ASDQHPNIVRWYGVENDKDFVYLSLERCT 484
             D HPNI++ + +  D    Y+  E  T
Sbjct: 77  KLD-HPNIMKLFEILEDSSSFYIVGELYT 104

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 32/152 (21%)

Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVK--RLVRALHDVAFKEIQNLIASD 458
           R+   +F     +  G+ G V Y+G +   G+  A+K   +     +   +EI  L    
Sbjct: 20  RDPAGIFELVELVGNGTYGQV-YKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS 78

Query: 459 QHPNIVRWYG------VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRA 511
            H NI  +YG           D ++L +E C   S+ DLI+    ++  +   E+     
Sbjct: 79  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIK----NTKGNTLKEEW---- 130

Query: 512 MIEYKLR--------LDSVKVIIRDLSLWKAD 535
            I Y  R        L   KVI RD+   K  
Sbjct: 131 -IAYICREILRGLSHLHQHKVIHRDI---KGQ 158

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 12/89 (13%)

Query: 415 IAKGSNGTVVYEGIYE-GRPVAVKRLVRALHDVAFKEIQNLIA--------SDQHPNIVR 465
           I  G +   V++ + E  +  A+K +   L +   + + +                 I+R
Sbjct: 36  IGSGGSS-KVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 92

Query: 466 WYGVENDKDFVYLSLERCTCSLDDLIQTY 494
            Y  E    ++Y+ +E     L+  ++  
Sbjct: 93  LYDYEITDQYIYMVMECGNIDLNSWLKKK 121

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 27/139 (19%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKR--LVRALHDVA--FKEIQNLIASDQHPNIVRWY 467
            I  G+   VV           VA+KR  L +    +    KEIQ +     HPNIV +Y
Sbjct: 22  VIGSGATA-VVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCH-HPNIVSYY 79

Query: 468 GVENDKDFVYLSLERCTC-SLDDLIQTY--SDSSCNSVFGEDQATRAMIEYKLR------ 518
                KD ++L ++  +  S+ D+I+         + V  E       I   LR      
Sbjct: 80  TSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDEST-----IATILREVLEGL 134

Query: 519 --LDSVKVIIRDLSLWKAD 535
             L     I RD+   KA 
Sbjct: 135 EYLHKNGQIHRDV---KAG 150

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVKRLVRALHDV--AF-KEIQNLIASDQHPNIVRWYG 468
            + KG  G    +  +   G  + +K L+R   +    F KE++ ++   +HPN++++ G
Sbjct: 17  VLGKGCFGQA-IKVTHRETGEVMVMKELIRFDEETQRTFLKEVK-VMRCLEHPNVLKFIG 74

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQT 493
           V      +    E     +L  +I++
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIKS 100

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 415 IAKGSNGTVVYEGIYE-GRPVAVKRLVRALHDVAFKEIQNL---IA-----SDQHPNIVR 465
           I  G +   V++ + E  +  A+K +   L +   + + +    IA           I+R
Sbjct: 64  IGSGGSS-KVFQVLNEKKQIYAIKYV--NLEEADNQTLDSYRNEIAYLNKLQQHSDKIIR 120

Query: 466 WYGVENDKDFVYLSLERCTCSLDDLIQTY 494
            Y  E    ++Y+ +E     L+  ++  
Sbjct: 121 LYDYEITDQYIYMVMECGNIDLNSWLKKK 149

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 399 GAQGRNVGKLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVK----RLVRALHDVA--FKE 450
                     +     + KGS G  V        G+  AVK    R V+   D     +E
Sbjct: 18  QHSTAIFSDRYKGQRVLGKGSFG-EVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 76

Query: 451 IQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT 484
           +Q L   D HPNI++ Y    DK + YL  E  T
Sbjct: 77  VQLLKQLD-HPNIMKLYEFFEDKGYFYLVGEVYT 109

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGV-END 472
            I KG  G  V  G Y G  VAVK +       AF    +++   +H N+V+  GV   +
Sbjct: 28  TIGKGEFG-DVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 86

Query: 473 KDFVYLSLERCTC-SLDDLIQTYSDSSCNSV----FGEDQATRAMIEYKLRLDSVKVIIR 527
           K  +Y+  E     SL D +++   S         F  D    AM EY   L+    + R
Sbjct: 87  KGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC-EAM-EY---LEGNNFVHR 141

Query: 528 DL 529
           DL
Sbjct: 142 DL 143

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 30/147 (20%)

Query: 403 RNVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLI---AS 457
            +  +LF    +I KGS G  V++GI     + VA+K +     +   ++IQ  I   + 
Sbjct: 18  ADPEELFTKLEKIGKGSFG-EVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ 76

Query: 458 DQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYK 516
              P + ++YG       +++ +E     S  DL++            E Q     I   
Sbjct: 77  CDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE-------PGPLDETQ-----IATI 124

Query: 517 LR--------LDSVKVIIRDLSLWKAD 535
           LR        L S K I RD+   KA 
Sbjct: 125 LREILKGLDYLHSEKKIHRDI---KAA 148

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK-----RLVRALHDVAFKEIQNLIASDQHPNIVRW 466
            + KGS G  V +       +  AVK                +E++ L   D HPNI++ 
Sbjct: 29  MLGKGSFG-EVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLD-HPNIMKL 86

Query: 467 YGVENDKDFVYLSLERCT 484
           + +  D    Y+  E  T
Sbjct: 87  FEILEDSSSFYIVGELYT 104

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 23/142 (16%)

Query: 401 QGRNVGKLFVSNTEIAKGSNGTVVYEGI--YEGRPVAVKRLVRALHDVAFKEIQNLIASD 458
           +   +    V++  +  G NG  V +          A+K L       A +E++    + 
Sbjct: 56  KNAIIDDYKVTSQVLGLGING-KVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRAS 112

Query: 459 QHPNIVRWYGV----ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM- 512
           Q P+IVR   V       +  + + +E      L   IQ   D +    F E +A+  M 
Sbjct: 113 QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA----FTEREASEIMK 168

Query: 513 -----IEYKLRLDSVKVIIRDL 529
                I+Y   L S+ +  RD+
Sbjct: 169 SIGEAIQY---LHSINIAHRDV 187

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 29/143 (20%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRL-VRALHDVA--FKEIQNLIASDQHP 461
           +++    E+  G+ G V Y+   +  G   A K +  ++  ++     EI+ L   D HP
Sbjct: 19  EVWEIVGELGDGAFGKV-YKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCD-HP 76

Query: 462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR-- 518
            IV+  G       +++ +E C   ++D ++        +    E Q     I+   R  
Sbjct: 77  YIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML-----ELDRGLTEPQ-----IQVVCRQM 126

Query: 519 ------LDSVKVIIRDLSLWKAD 535
                 L S ++I RDL   KA 
Sbjct: 127 LEALNFLHSKRIIHRDL---KAG 146

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 27/137 (19%)

Query: 414 EIAKGSNGTVV-YEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYG---- 468
            I  G  G V   +   +G+   +KR V+  ++ A +E+   +A   H NIV + G    
Sbjct: 18  LIGSGGFGQVFKAKHRIDGKTYVIKR-VKYNNEKAEREV-KALAKLDHVNIVHYNGCWDG 75

Query: 469 ------------VENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY 515
                         +    +++ +E C   +L+  I+            +  A     + 
Sbjct: 76  FDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR----GEKLDKVLALELFEQI 131

Query: 516 KLRLD---SVKVIIRDL 529
              +D   S K+I RDL
Sbjct: 132 TKGVDYIHSKKLINRDL 148

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 22/134 (16%)

Query: 414 EIAKGSNGTVV-YEGIYEGRPVAVKRLVRALHDVAFKEIQ------NLIASDQHPNIVRW 466
            I  GS G         +G+ +  K L      +   E Q      NL+   +HPNIVR+
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKEL--DYGSMTEAEKQMLVSEVNLLRELKHPNIVRY 70

Query: 467 YG--VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMI------EY-- 515
           Y   ++     +Y+ +E C    L  +I     +       E+   R M       +   
Sbjct: 71  YDRIIDRTNTTLYIVMEYCEGGDLASVITKG--TKERQYLDEEFVLRVMTQLTLALKECH 128

Query: 516 KLRLDSVKVIIRDL 529
           +       V+ RDL
Sbjct: 129 RRSDGGHTVLHRDL 142

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK----RLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
            +  G  G  V   I++  G  VA+K     L     +    EIQ +     HPN+V   
Sbjct: 21  RLGTGGFG-YVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIM-KKLNHPNVVSAR 78

Query: 468 GVENDK------DFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAM------IE 514
            V +        D   L++E C    L   +  + +        E      +      + 
Sbjct: 79  EVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCG---LKEGPIRTLLSDISSALR 135

Query: 515 YKLRLDSVKVIIRDL 529
           Y   L   ++I RDL
Sbjct: 136 Y---LHENRIIHRDL 147

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 9/78 (11%)

Query: 414 EIAKGSNGTVVYEGIY--EGRPVAVK-----RLVRALHDVAFKEIQNLIASDQHPNIVRW 466
           E+ KG+   VV   +    G+  A       +L    H    +E +       HPNIVR 
Sbjct: 18  ELGKGAFS-VVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLK-HPNIVRL 75

Query: 467 YGVENDKDFVYLSLERCT 484
           +   +++   YL  +  T
Sbjct: 76  HDSISEEGHHYLIFDLVT 93

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 31/143 (21%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLI---ASDQHP 461
           K +    +I +G++GTV Y  +    G+ VA+++ +        + I N I     +++P
Sbjct: 20  KKYTRFEKIGQGASGTV-YTAMDVATGQEVAIRQ-MNLQQQPKKELIINEILVMRENKNP 77

Query: 462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR-- 518
           NIV +       D +++ +E     SL D++         +   E Q     I    R  
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-------ETCMDEGQ-----IAAVCREC 125

Query: 519 ------LDSVKVIIRDLSLWKAD 535
                 L S +VI RD+   K+D
Sbjct: 126 LQALEFLHSNQVIHRDI---KSD 145

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 28/145 (19%)

Query: 407 KLFVSNTEIAKGSNGT-VVYEGIYE--GRPVAVKRL-VRALHDVAFKEIQNLI---ASDQ 459
             +   T I KG      V    Y+  G  V V+R+ + A  +     +Q  +       
Sbjct: 25  GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFN 84

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR 518
           HPNIV +       + +++        S  DLI T+          E       I Y L+
Sbjct: 85  HPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTH----FMDGMNELA-----IAYILQ 135

Query: 519 --------LDSVKVIIRDLSLWKAD 535
                   +  +  + R +   KA 
Sbjct: 136 GVLKALDYIHHMGYVHRSV---KAS 157

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-VRALHDVAFKEIQNLIA---SDQHPNIVRWY 467
           E+ KG+   VV   +++  G   A K +  + L    F++++         QHPNIVR +
Sbjct: 13  ELGKGAFS-VVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH 71

Query: 468 GVENDKDFVYLSLERCT 484
               ++ F YL  +  T
Sbjct: 72  DSIQEESFHYLVFDLVT 88

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLIA---SDQHP 461
            L  S  +I +GS G V      +  GR VAVK  +        + + N +      QH 
Sbjct: 45  LLLDSYVKIGEGSTGIV-CLAREKHSGRQVAVKM-MDLRKQQRRELLFNEVVIMRDYQHF 102

Query: 462 NIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR-- 518
           N+V  Y      + +++ +E     +L D++             E+Q     I       
Sbjct: 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVS-------QVRLNEEQ-----IATVCEAV 150

Query: 519 ------LDSVKVIIRDLSLWKAD 535
                 L +  VI RD+   K+D
Sbjct: 151 LQALAYLHAQGVIHRDI---KSD 170

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 398 GGAQGRNVGKLFVSNTE-------IAKGSNGTVVY--EGIYEGRPVAVKRL-VRALHD-- 445
           G       G + + + +       + +G    V    EG+++G   A+KR+      D  
Sbjct: 13  GRENLYFQGHMVIIDNKHYLFIQKLGEGGFSYV-DLVEGLHDGHFYALKRILCHEQQDRE 71

Query: 446 VAFKEIQNLIASDQHPNIVRWYGV----ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCN 500
            A +E         HPNI+R           K   +L L      +L + I+   D    
Sbjct: 72  EAQREADMH-RLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDK--G 128

Query: 501 SVFGEDQA 508
           +   EDQ 
Sbjct: 129 NFLTEDQI 136

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 414 EIAKGSNGTVVYEGIY------EGRPVAVKRLVRALHDVAFKEIQ---NLIASDQHPNIV 464
           ++ +G  G V     Y       G  VAVK L            +   +++ +  H +I+
Sbjct: 38  DLGEGHFGKV-SLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHII 96

Query: 465 RWYGV--ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDS 521
           ++ G   +     + L +E     SL D +  +S      +    Q    M  Y   L +
Sbjct: 97  KYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGM-AY---LHA 152

Query: 522 VKVIIRDL 529
              I RDL
Sbjct: 153 QHYIHRDL 160

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 9/77 (11%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK----RLVRALHDVAFKEIQNLIASDQHPNIVRWY 467
            +  G+    V+       G+  A+K            +   EI  L     H NIV   
Sbjct: 16  VLGSGAFS-EVFLVKQRLTGKLFALKCIKKSPAFRDSSL-ENEIAVLKKIK-HENIVTLE 72

Query: 468 GVENDKDFVYLSLERCT 484
            +       YL ++  +
Sbjct: 73  DIYESTTHYYLVMQLVS 89

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 399 GAQGRNVGKLF-VSNTEIAKGSNGTVVYEGIYE--GRPVAVK-----RLVRALHDVAFKE 450
                N    + +++ E+ +G    VV + I +  G+  A K     R  +        E
Sbjct: 20  FQSMENFNNFYILTSKELGRGKFA-VVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHE 78

Query: 451 IQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT 484
           I  L  +   P ++  + V  +   + L LE   
Sbjct: 79  IAVLELAKSCPRVINLHEVYENTSEIILILEYAA 112

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 27/112 (24%)

Query: 363 VVEKKVENMSSGNENGFSIS--KDASDPFLDLNKLVRGGAQGRNVGKLFVSNTEIAKGSN 420
           V  ++   +  G    FS+   + ASD F + N L RGG         F        G  
Sbjct: 4   VPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGG---------F--------GK- 45

Query: 421 GTVVYEGIYE-GRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVRWYG 468
              VY+G    G  VAVKRL          + Q    +I+   H N++R  G
Sbjct: 46  ---VYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-VRALHDVAFKEIQNLIA---SDQHPNIVRWY 467
           E+ KG+   VV   +++  G   A K +  + L    F++++         QHPNIVR +
Sbjct: 36  ELGKGAFS-VVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH 94

Query: 468 GVENDKDFVYLSLERCT 484
               ++ F YL  +  T
Sbjct: 95  DSIQEESFHYLVFDLVT 111

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 399 GAQGRNVGKLFVSNTEIAKGSNGTVVYEGIY--EGRPVAVKRLV-RALHDVAFKEIQNLI 455
           G+    +   F   +E+ +G+   +VY        +P A+K L       +   EI  L+
Sbjct: 45  GSNRDALSDFFEVESELGRGATS-IVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLL 103

Query: 456 ASDQHPNIVRWYGVENDKDFVYLSLERCT 484
               HPNI++   +      + L LE  T
Sbjct: 104 RLS-HPNIIKLKEIFETPTEISLVLELVT 131

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 13/89 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQ---NLIASDQHPNIVRWYG 468
           E+  G+ G V ++  ++  G  +A K +   +      +I     ++     P IV +YG
Sbjct: 40  ELGAGNGGVV-FKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG 98

Query: 469 ---VENDKDFVYLSLERC-TCSLDDLIQT 493
               + +   + + +E     SLD +++ 
Sbjct: 99  AFYSDGE---ISICMEHMDGGSLDQVLKK 124

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 414 EIAKGSNGTVVYEGI--YEGRPVAVKRLVRAL--------HDVAFKEIQNLIASDQHPNI 463
            I +GS G VV   I        A+K + +           +    E++ +     HPNI
Sbjct: 33  AIGQGSYG-VVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLH-HPNI 90

Query: 464 VRWYGVENDKDFVYLSLERCT 484
            R Y V  D+ ++ L +E C 
Sbjct: 91  ARLYEVYEDEQYICLVMELCH 111

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 12/123 (9%)

Query: 414 EIAKGSNGTVVYEGIYEGR--PVAVKRLVRALHDV-AFKEIQNLIASDQHPNIVRWYGVE 470
           ++  G  G  VYEG+++     VAVK L     +V  F +   ++   +HPN+V+  GV 
Sbjct: 227 KLGGGQYG-EVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVC 285

Query: 471 NDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGED---QATRAMIEYKLRLDSVKVII 526
             +   Y+  E  T  +L D ++  +    ++V       Q + AM EY   L+    I 
Sbjct: 286 TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM-EY---LEKKNFIH 341

Query: 527 RDL 529
           R+L
Sbjct: 342 RNL 344

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 15/83 (18%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVR---------ALHDVAFKEIQNLI---ASDQ 459
            + KG  GTV + G        VA+K + R         +       E+  L    A   
Sbjct: 38  LLGKGGFGTV-FAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGG 96

Query: 460 HPNIVRWYGVENDKDFVYLSLER 482
           HP ++R       ++   L LER
Sbjct: 97  HPGVIRLLDWFETQEGFMLVLER 119

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 24/133 (18%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVK----RLVRALHDVAFKEIQNLIA---SDQHPNIV 464
            I KG    VV   I    G+  AVK        +   ++ ++++   +     +HP+IV
Sbjct: 31  VIGKGPFS-VVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIV 89

Query: 465 RWYGVENDKDFVYLSLERCTCS--LDDLIQTYSDSSCNSVFGEDQATRAM------IEYK 516
                 +    +Y+  E    +    ++++    +    V+ E  A+  M      + Y 
Sbjct: 90  ELLETYSSDGMLYMVFEFMDGADLCFEIVKR---ADAGFVYSEAVASHYMRQILEALRY- 145

Query: 517 LRLDSVKVIIRDL 529
                  +I RD+
Sbjct: 146 --CHDNNIIHRDV 156

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 28/140 (20%)

Query: 397 RGGAQGRN----VGKLFVSNTE-------IAKGSNGTVVY--EGIYEGRPVAVKR-LVRA 442
            GGA GR+    VG+              +A+G    V Y  + +  GR  A+KR L   
Sbjct: 7   LGGASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFV-YEAQDVGSGREYALKRLLSNE 65

Query: 443 LHD--VAFKEIQNLIASDQHPNIVRWYGV--------ENDKDFVYLSLERCTCSLDDLIQ 492
                   +E+  +     HPNIV++           +  +    L  E C   L + ++
Sbjct: 66  EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLK 125

Query: 493 TYSDSSCNSVFGEDQATRAM 512
                        D   +  
Sbjct: 126 KMES---RGPLSCDTVLKIF 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	549
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.89
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.89
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.88
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.87
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.86
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.86
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.86
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.86
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.85
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.85
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.84
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.84
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.84
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.83
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.82
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.81
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.81
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.8
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	99.75
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.74
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.73
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.73
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.72
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.72
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.72
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.72
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.71
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.71
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.71
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.71
3niz_A	311	Rhodanese family protein; structural genomics, str	99.71
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.71
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.71
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.71
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.71
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.7
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.7
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.7
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.7
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.7
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.7
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.69
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.69
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.69
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.69
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.69
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.69
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.68
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.68
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.68
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.68
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.68
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.68
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.68
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.68
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.67
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.67
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.67
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.67
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.67
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.67
3uqc_A	286	Probable conserved transmembrane protein; structur	99.67
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.67
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.67
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.67
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.67
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.66
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.66
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.66
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.66
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.66
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.66
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.66
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.66
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.66
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.66
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.66
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.66
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.66
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.66
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.66
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.65
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.65
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.65
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.65
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.65
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.65
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.65
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.65
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.65
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.65
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.65
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.65
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.65
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.65
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.64
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.64
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.64
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.64
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.64
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.64
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.64
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.64
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.64
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.64
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.64
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.64
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.64
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.64
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.64
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.64
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.64
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.64
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.64
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.63
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.63
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.63
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.63
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.63
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.63
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.63
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.63
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.63
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.63
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.63
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.63
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.63
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.63
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.63
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.63
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.63
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.63
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.63
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.63
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.62
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.62
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.62
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.62
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.62
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.62
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.62
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.62
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.62
3bhy_A	283	Death-associated protein kinase 3; death associate	99.62
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.62
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.62
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.62
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.62
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.62
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.62
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.62
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.62
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.62
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.62
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.62
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.62
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.61
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.61
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.61
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.61
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.61
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.61
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.61
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.61
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.61
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.61
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.61
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.61
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.61
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.6
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.6
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.6
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.6
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.6
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.6
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.6
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.6
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.6
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.6
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.6
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.6
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.6
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.6
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.6
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.6
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.6
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.6
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.6
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.59
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.59
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.59
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.59
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.59
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.59
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.59
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.59
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.59
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.59
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.59
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.58
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.58
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.58
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.58
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.58
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.58
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.58
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.58
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.58
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.58
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.58
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.57
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.57
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.57
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.57
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.57
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.57
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.56
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.56
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.56
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.56
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.56
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.56
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.56
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.55
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.55
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.55
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.55
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.55
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.55
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.55
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.55
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.55
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.54
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.54
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.53
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.53
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.53
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.53
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.53
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.52
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.52
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.52
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.52
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.52
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.51
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.51
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.47
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.46
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.45
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.44
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.38
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.38
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.36
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.33
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.3
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.29
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.19
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.16
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.15
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	99.13
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.05
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.5
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.68
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.36
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	96.64
3hx6_A	570	Type 4 fimbrial biogenesis protein PILY1; beta pro	96.22
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.17
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.16
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.63
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.6
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.29
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.26
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.04
3hx6_A	570	Type 4 fimbrial biogenesis protein PILY1; beta pro	94.78
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.38
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.25
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.18
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	94.05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.82
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	93.8
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	93.72
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	93.58
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	93.48
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.31
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	93.26
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.19
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	92.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	92.59
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.55
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.38
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.28
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	92.06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.03
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	91.65
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.4
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	91.28
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	91.16
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.86
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.72
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.54
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	90.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	89.9
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	89.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	89.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	89.37
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.24
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	89.18
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	88.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	88.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	88.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.8
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	88.78
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	88.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	88.73
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	88.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	88.43
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.37
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	88.32
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	88.2
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	88.12
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.08
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	87.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	87.59
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.56
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	87.54
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	87.45
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	87.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	87.37
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	86.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	86.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	86.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	86.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.71
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	86.23
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	86.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	85.92
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	85.9
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	85.48
3elq_A	571	Arylsulfate sulfotransferase; beta propeller, prot	84.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	84.61
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	84.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	84.31
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	83.85
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	83.53
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	83.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	83.43
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	83.32
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	83.01
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	82.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	82.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	82.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	81.49
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	81.47
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	81.12
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	81.04
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	80.81
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	80.65
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	80.53

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.89  E-value=9.5e-25  Score=223.94  Aligned_cols=132  Identities=23%  Similarity=0.218  Sum_probs=117.4

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||+||+ .++.+|+.||||++.+..      .+.+.+|+..|.. ++|||||++++++++++.+|||||
T Consensus        34 y~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~yivmE  112 (311)
T 4aw0_A           34 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR-LDHPFFVKLYFTFQDDEKLYFGLS  112 (311)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEeCCEEEEEEe
Confidence            99999999999999988 477889999999876432      2356789966655 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.++|++      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|++
T Consensus       113 y~~gG~L~~~i~~------~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~  180 (311)
T 4aw0_A          113 YAKNGELLKYIRK------IGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAK  180 (311)
T ss_dssp             CCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCce
Confidence            998 599999987      5679999999999999   899999999999999    89999999999988876

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.89  E-value=9.5e-25  Score=220.42  Aligned_cols=139  Identities=24%  Similarity=0.312  Sum_probs=114.3

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      ++..+++ |++.+.||+|+||+||++ +..+|+.||||++.+.      ....+.+|+..|..+ +|||||++++++.++
T Consensus         8 ~G~~ig~-Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~~~~~~~~~   85 (275)
T 3hyh_A            8 DGAHIGN-YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLL-RHPHIIKLYDVIKSK   85 (275)
T ss_dssp             ------C-CEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHC-CCTTBCCEEEEEECS
T ss_pred             CCCEeeC-eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC-CCCCCCeEEEEEEEC
Confidence            3456777 999999999999999884 6788999999977431      234577899776555 999999999999999


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.+|||||||+|+|.+++.+      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.+++++
T Consensus        86 ~~~~ivmEy~~g~L~~~l~~------~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla  159 (275)
T 3hyh_A           86 DEIIMVIEYAGNELFDYIVQ------RDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLS  159 (275)
T ss_dssp             SEEEEEEECCCEEHHHHHHH------SCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC
T ss_pred             CEEEEEEeCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCC
Confidence            99999999999999999987      5679999999999999   899999999999999    8999999999888877


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       160 ~  160 (275)
T 3hyh_A          160 N  160 (275)
T ss_dssp             -
T ss_pred             e
Confidence            5

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.88  E-value=3.4e-24  Score=223.26  Aligned_cols=135  Identities=21%  Similarity=0.358  Sum_probs=111.8

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||+||++ ++.+|+.||||++.+.     ..+.+.+|+..|..+ +|||||++++++.+++.+||||||
T Consensus        26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIV~~~~~~~~~~~~yiVmEy  104 (350)
T 4b9d_A           26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM-KHPNIVQYRESFEENGSLYIVMDY  104 (350)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             eEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHC-CCCCCCcEEEEEEECCEEEEEEeC
Confidence            999999999999999884 7788999999987532     345678999776555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+ |+|.++|...+    ...+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|+|-
T Consensus       105 ~~gg~L~~~i~~~~----~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  174 (350)
T 4b9d_A          105 CEGGDLFKRINAQK----GVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARV  174 (350)
T ss_dssp             CTTCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESC
T ss_pred             CCCCcHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEccccccee
Confidence            98 59999997632    3457899999999999   899999999999999    899999999999988763

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.87  E-value=5.3e-24  Score=221.51  Aligned_cols=134  Identities=23%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.++||+|+||+||++ ++.+|+.||||++...   ..+.+.+|+..|..+ +|||||+++++|.+++.+||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l-~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY-QHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEeC
Confidence            34999999999999999884 6788999999988643   234577999776555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+ |+|.+++..       +.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|++.
T Consensus       153 ~~gg~L~~~l~~-------~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  219 (346)
T 4fih_A          153 LEGGALTDIVTH-------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQ  219 (346)
T ss_dssp             CTTEEHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCCCcHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCcee
Confidence            98 599999876       459999999999999   899999999999999    899999999999998763

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.86  E-value=9.1e-24  Score=218.98  Aligned_cols=131  Identities=22%  Similarity=0.257  Sum_probs=114.7

Q ss_pred             eeeecccccccCCceEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          408 LFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      .|++.++||+|+||+||+ .++.+|+.||||+++.+  ....+|+..| +.++|||||++++++.+.+.+|||||||+ |
T Consensus        59 ~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~--~~~~~E~~il-~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  135 (336)
T 4g3f_A           59 WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE--VFRVEELVAC-AGLSSPRIVPLYGAVREGPWVNIFMELLEGG  135 (336)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT--TCCTHHHHTT-TTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred             heEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH--HhHHHHHHHH-HhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            388899999999999988 47788999999988653  2345799665 44599999999999999999999999998 5


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhhhhh
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLSLMR  547 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~Lmr  547 (549)
                      +|.++|+.      .+.+++..++.++.|+   |+|||+++|||||||    |++.+| +.++.+++|+|
T Consensus       136 ~L~~~l~~------~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~  199 (336)
T 4g3f_A          136 SLGQLIKQ------MGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHAL  199 (336)
T ss_dssp             BHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCE
T ss_pred             cHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCe
Confidence            99999987      5679999999999999   899999999999999    888888 58888888875

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.86  E-value=1.4e-23  Score=223.64  Aligned_cols=134  Identities=23%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.++||+|+||.||++ ++.+|+.||||++...   ..+.+.+|+..|..+ +|||||+++++|.+.+.+||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l-~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDY-QHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhC-CCCCCCceEEEEEECCEEEEEEeC
Confidence            34999999999999999884 7788999999988643   234577999776555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+ |+|.++++.       +.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|++-
T Consensus       230 ~~gG~L~~~i~~-------~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~  296 (423)
T 4fie_A          230 LEGGALTDIVTH-------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQ  296 (423)
T ss_dssp             CTTEEHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEE
T ss_pred             CCCCcHHHHHhc-------cCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceE
Confidence            98 599999875       459999999999999   899999999999999    899999999999998763

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.3e-23  Score=221.04  Aligned_cols=138  Identities=21%  Similarity=0.260  Sum_probs=119.4

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-----  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----  472 (549)
                      .+++.|++.+.||+|+||+||++ ++.+|+.||||++...     ....+.+|+..|..+ +|||||++++++..     
T Consensus        51 ~i~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~HpnIv~l~~~~~~~~~~~  129 (398)
T 4b99_A           51 DVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHF-KHDNIIAIKDILRPTVPYG  129 (398)
T ss_dssp             CCCSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSSCTT
T ss_pred             CCCCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhc-CCCCcceEeeeeecccccc
Confidence            35667999999999999998884 7788999999988642     334577899776555 99999999998753     


Q ss_pred             -cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          473 -KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       473 -~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                       .+.+|||||||+|+|.+++..      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++
T Consensus       130 ~~~~~~ivmE~~~g~L~~~i~~------~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFG  203 (398)
T 4b99_A          130 EFKSVYVVLDLMESDLHQIIHS------SQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFG  203 (398)
T ss_dssp             TCCCEEEEEECCSEEHHHHHTS------SSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecc
Confidence             467999999999999999987      5679999999999999   899999999999999    89999999999999


Q ss_pred             hhhc
Q 042769          545 LMRL  548 (549)
Q Consensus       545 Lmrd  548 (549)
                      |+|.
T Consensus       204 la~~  207 (398)
T 4b99_A          204 MARG  207 (398)
T ss_dssp             TCBC
T ss_pred             eeee
Confidence            8874

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.86  E-value=2.9e-23  Score=212.04  Aligned_cols=139  Identities=22%  Similarity=0.215  Sum_probs=113.2

Q ss_pred             eeecccccccCCceEEEee------eecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.+.||+|+||+||++.      ..+++.||||+++.   ...+.+.+|+..|.+ ++|||||+++|+|.+.+.+|||
T Consensus        15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~-l~HpnIV~l~g~~~~~~~~~lV   93 (299)
T 4asz_A           15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTN-LQHEHIVKFYGVCVEGDPLIMV   93 (299)
T ss_dssp             EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSEEEE
T ss_pred             eEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHh-CCCCCCccEEEEEeeCCEEEEE
Confidence            8889999999999998742      23578899998763   234467899966655 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhccc-------CCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          480 LERCT-CSLDDLIQTYSD-------SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~-------~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ||||+ |+|.++|+.++.       ......+++..++.++.|+   |+|||+++|||||||    |++.++.+++.+++
T Consensus        94 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFG  173 (299)
T 4asz_A           94 FEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFG  173 (299)
T ss_dssp             EECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred             EEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcc
Confidence            99997 699999987421       1123468999999999999   899999999999999    89999999999999


Q ss_pred             hhhc
Q 042769          545 LMRL  548 (549)
Q Consensus       545 Lmrd  548 (549)
                      |+|.
T Consensus       174 la~~  177 (299)
T 4asz_A          174 MSRD  177 (299)
T ss_dssp             CHHH
T ss_pred             ccee
Confidence            8874

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.85  E-value=3.4e-23  Score=210.65  Aligned_cols=135  Identities=25%  Similarity=0.206  Sum_probs=113.2

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cce
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDF  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~  475 (549)
                      ++.|++.++||+|+||+||++ +..+++.||+|++...     ..+.+.+|+..|.++ +|||||+++++|.+    ...
T Consensus        25 gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l-~HpnIV~~~~~~~~~~~~~~~  103 (290)
T 3fpq_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL-QHPNIVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEEEETTEEE
T ss_pred             CceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEeeccCCCcE
Confidence            454678889999999998884 6778999999977532     334677899666554 99999999999864    456


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccc-cCCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWK-ADGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~-~~G~p~~~l~~  544 (549)
                      +|||||||+ |+|.++|++      .+.+++..++.++.|+   |+|||+++  |||||||    |++ .+|+.++.+++
T Consensus       104 ~~lvmEy~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFG  177 (290)
T 3fpq_A          104 IVLVTELMTSGTLKTYLKR------FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLG  177 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTT
T ss_pred             EEEEEeCCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCc
Confidence            899999998 699999987      5679999999999999   89999988  9999999    776 58999999998


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      |++
T Consensus       178 la~  180 (290)
T 3fpq_A          178 LAT  180 (290)
T ss_dssp             GGG
T ss_pred             CCE
Confidence            876

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.85  E-value=6.3e-23  Score=212.32  Aligned_cols=139  Identities=21%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             eeecccccccCCceEEEee------eecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |.+.++||+|+||+||++.      ..+++.||||+++.   ...+.+.+|+..|.+ ++|||||+++|+|.+.+.+|||
T Consensus        43 ~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~-l~HpnIV~l~g~~~~~~~~~lV  121 (329)
T 4aoj_A           43 IVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTM-LQHQHIVRFFGVCTEGRPLLMV  121 (329)
T ss_dssp             EEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSEEEE
T ss_pred             eEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEE
Confidence            8888999999999988742      24578999998863   234567899966655 5999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccC---------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          480 LERCT-CSLDDLIQTYSDS---------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~---------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      ||||+ |+|.++|+.+...         .....+++..++.++.|+   |+|||+++|||||||    |++.++.+++.+
T Consensus       122 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~D  201 (329)
T 4aoj_A          122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD  201 (329)
T ss_dssp             EECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECC
T ss_pred             EEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcc
Confidence            99997 6999999874321         112468999999999999   999999999999999    899999999999


Q ss_pred             hhhhhc
Q 042769          543 LSLMRL  548 (549)
Q Consensus       543 ~~Lmrd  548 (549)
                      ++|+|.
T Consensus       202 FGla~~  207 (329)
T 4aoj_A          202 FGMSRD  207 (329)
T ss_dssp             CC----
T ss_pred             ccccee
Confidence            999875

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.84  E-value=1.9e-23  Score=213.87  Aligned_cols=133  Identities=24%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             eeecccccccCCceEEEe-e---eecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-G---IYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~---~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.+.||+|+||+||++ .   ..+++.||||++.+..     ...+.+|+..| +.++|||||++++++.+++.+|||
T Consensus        26 Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~l~~~~~~~~~~~iv  104 (304)
T 3ubd_A           26 FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDIL-VEVNHPFIVKLHYAFQTEGKLYLI  104 (304)
T ss_dssp             EEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCC-CCCCCTTEECEEEEEEETTEEEEE
T ss_pred             cEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHH-HHCCCCCCCeEEEEEEECCEEEEE
Confidence            999999999999999874 3   2457899999886531     22466788655 455999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||+ |+|.++|.+      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|+|.
T Consensus       105 mEy~~gg~L~~~l~~------~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A          105 LDFLRGGDLFTRLSK------EVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             ECCCTTCEEHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             EEcCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            99998 599999987      5679999999999999   899999999999999    899999999998888763

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.84  E-value=1.1e-22  Score=208.56  Aligned_cols=139  Identities=21%  Similarity=0.179  Sum_probs=113.5

Q ss_pred             eeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +++.++||+|+||+||+..      ..+++.||||+++..    ..+.+.+|+..|.+ ++|||||+++|+|...+.+||
T Consensus        28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~-l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRAR-LQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHH-CCCTTBCCEEEEECSSSSCEE
T ss_pred             CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHh-CCCCCCCCcceEEEECCEEEE
Confidence            7778899999999988742      235789999988643    23457789966655 499999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          479 SLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |||||+ |+|.++|......          .....+++..+..++.|+   |+|||+++|||||||    |++.++.+++
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki  186 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKI  186 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEE
Confidence            999997 7999999764321          112458889999999999   999999999999999    9999999999


Q ss_pred             hhhhhhhc
Q 042769          541 LLLSLMRL  548 (549)
Q Consensus       541 ~l~~Lmrd  548 (549)
                      .+++|+|.
T Consensus       187 ~DFGlar~  194 (308)
T 4gt4_A          187 SDLGLFRE  194 (308)
T ss_dssp             CCSCCBCG
T ss_pred             CCccccee
Confidence            99998874

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.84  E-value=1e-22  Score=208.06  Aligned_cols=138  Identities=19%  Similarity=0.300  Sum_probs=108.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-----  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-----  474 (549)
                      +++ |++.+.||+|+||+||++ ++.+|+.||||++..    ...+.+.+|+..|.. ++|||||++++++...+     
T Consensus         4 l~d-y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~-l~HpnIV~~~~~~~~~~~~~~~   81 (299)
T 4g31_A            4 LTD-FEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAK-LEHPGIVRYFNAWLEKNTTEKL   81 (299)
T ss_dssp             HHH-EEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEEEC-----
T ss_pred             chh-CEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEEecCccccc
Confidence            344 999999999999998884 678899999998752    233467789976655 59999999999986543     


Q ss_pred             -------eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc
Q 042769          475 -------FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS  539 (549)
Q Consensus       475 -------~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~  539 (549)
                             ++|||||||+ |+|.+++.....   ....++..++.++.|+   |+|||+++|||||||    |++.+|+.+
T Consensus        82 ~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~---~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vK  158 (299)
T 4g31_A           82 QPSSPKVYLYIQMQLCRKENLKDWMNGRCT---IEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK  158 (299)
T ss_dssp             -----CEEEEEEEECCCSCCHHHHHHTCCS---GGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEE
T ss_pred             cccCCCcEEEEEEecCCCCcHHHHHHhcCC---CChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEE
Confidence                   4799999997 599999987321   1223445578899999   899999999999999    899999999


Q ss_pred             hhhhhhhh
Q 042769          540 PLLLSLMR  547 (549)
Q Consensus       540 ~~l~~Lmr  547 (549)
                      +.+++|++
T Consensus       159 l~DFGla~  166 (299)
T 4g31_A          159 VGDFGLVT  166 (299)
T ss_dssp             ECCCCCC-
T ss_pred             EccCccce
Confidence            98888875

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.83  E-value=3.6e-22  Score=204.21  Aligned_cols=134  Identities=23%  Similarity=0.252  Sum_probs=109.9

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHH-HHhcCCCCCeeEEeeeccCcc----eEEEEe
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQN-LIASDQHPNIVRWYGVENDKD----FVYLSL  480 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~-L~~~l~HpNIVrl~g~~~~~~----~~yLVm  480 (549)
                      .+.|.+.++||+|+||+||+ +..+|+.||||++.........+|.+. .+..++|||||+++++|...+    .+||||
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~-~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWR-GKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEE-EEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             CcEEEEEEEEeeCCCeEEEE-EEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            44588899999999999766 456899999998875544444444333 224459999999999997654    589999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce--------eEEEeecc----ccccCCCCchhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV--------KVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~--------~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      |||+ |+|.++|+.       ..+++..+.+++.|+   |+|||++        +|||||||    |++.+|++++.+++
T Consensus        81 Ey~~~gsL~~~l~~-------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG  153 (303)
T 3hmm_A           81 DYHEHGSLFDYLNR-------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG  153 (303)
T ss_dssp             ECCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             cCCCCCcHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCC
Confidence            9997 699999976       358889999999999   8999976        99999999    99999999999999


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      |+|
T Consensus       154 la~  156 (303)
T 3hmm_A          154 LAV  156 (303)
T ss_dssp             TCE
T ss_pred             CCc
Confidence            875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.82  E-value=1e-21  Score=219.17  Aligned_cols=139  Identities=22%  Similarity=0.204  Sum_probs=117.6

Q ss_pred             ccceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHH--HHHHhcCCCCCeeEEeeeccCc
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEI--QNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei--~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      ..+.+ |++.++||+|+||+||+ ..+.+|+.||||++.+..      .....+|.  ..+++.++|||||+++++|.+.
T Consensus       186 ~sldd-f~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~  264 (689)
T 3v5w_A          186 LTMND-FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP  264 (689)
T ss_dssp             CCGGG-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS
T ss_pred             CchHH-eEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEEC
Confidence            44555 99999999999999988 477889999999776532      11223332  2344566999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +.+|||||||+ |+|.++|..      .+.+++..++.++.||   |+|||+++|||||||    |++.+|+.++.+++|
T Consensus       265 ~~lylVmEy~~GGdL~~~l~~------~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGl  338 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHYHLSQ------HGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL  338 (689)
T ss_dssp             SEEEEEECCCCSCBHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             CEEEEEEecCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccce
Confidence            99999999998 599999987      5679999999999999   899999999999999    899999999999998


Q ss_pred             hhc
Q 042769          546 MRL  548 (549)
Q Consensus       546 mrd  548 (549)
                      ++.
T Consensus       339 A~~  341 (689)
T 3v5w_A          339 ACD  341 (689)
T ss_dssp             CEE
T ss_pred             eee
Confidence            865

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.1e-21  Score=200.98  Aligned_cols=130  Identities=22%  Similarity=0.192  Sum_probs=107.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      +++.++||+|+||+||+.. .. ..||||+++.     ...+.+.+|+..|.+ ++|||||++++++.. +.+|||||||
T Consensus        38 l~l~~~iG~G~fG~Vy~~~-~~-~~vAvK~~~~~~~~~~~~~~f~~E~~il~~-l~HpNIV~l~g~~~~-~~~~iVmEy~  113 (307)
T 3omv_A           38 VMLSTRIGSGSFGTVYKGK-WH-GDVAVKILKVVDPTPEQFQAFRNEVAVLRK-TRHVNILLFMGYMTK-DNLAIVTQWC  113 (307)
T ss_dssp             CCEEEECCCCSSSEEEEEE-SS-SEEEEEECCCSSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             eEEeeEEeeCCCcEEEEEE-EC-CcEEEEEEEecCCCHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEC-CeEEEEEEcC
Confidence            6777899999999987742 22 3589987752     234567789966654 599999999999865 5689999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      + |+|.++|+..     ...+++..+..++.|+   |+|||+++|||||||    |++.+|.+++.+++|+|
T Consensus       114 ~gGsL~~~l~~~-----~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~  180 (307)
T 3omv_A          114 EGSSLYKHLHVQ-----ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLAT  180 (307)
T ss_dssp             SSCBHHHHHHTS-----CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCB
T ss_pred             CCCCHHHHHhhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCce
Confidence            8 6999999762     3569999999999999   999999999999999    89999999999998876

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.81  E-value=1.2e-21  Score=204.66  Aligned_cols=142  Identities=21%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             eeeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~  476 (549)
                      .|++.++||+|+||+||++. .     .+++.||||++...    ..+.+.+|+..|.++.+|||||+++|+|.. .+.+
T Consensus        65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~  144 (353)
T 4ase_A           65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL  144 (353)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCC
T ss_pred             HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEE
Confidence            48999999999999988742 2     23467999987642    234577899888887667999999999865 4578


Q ss_pred             EEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          477 YLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                      |||||||+ |+|.++|+..+..          .....+++..+..++.|+   |+|||+++|||||||    |++.+|.+
T Consensus       145 ~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~v  224 (353)
T 4ase_A          145 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVV  224 (353)
T ss_dssp             EEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCE
T ss_pred             EEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCCCCE
Confidence            99999997 6999999874321          012458889999999999   899999999999999    89999999


Q ss_pred             chhhhhhhhcC
Q 042769          539 SPLLLSLMRLV  549 (549)
Q Consensus       539 ~~~l~~Lmrd~  549 (549)
                      ++.+++|+|.+
T Consensus       225 Ki~DFGlar~~  235 (353)
T 4ase_A          225 KICDFGLARDI  235 (353)
T ss_dssp             EECCCGGGSCT
T ss_pred             EECcchhhhhc
Confidence            99999999853

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.80  E-value=1.4e-21  Score=204.78  Aligned_cols=135  Identities=16%  Similarity=0.213  Sum_probs=114.3

Q ss_pred             cceeeeeecccccccCCceEEEe-ee---ecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GI---YEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~---~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.+.|++.++||+|+||+||++ ++   .+++.||||++.+. ...+..+|++.|..+.+|||||++++++.+.+.+||
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~l   97 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVI   97 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEE
Confidence            45666999999999999999885 33   35789999977643 233567899888777789999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l~~Lmr  547 (549)
                      |||||+ |+|.++++.         +++.+++.++.|+   |+|||++||||||||    |++.+ |+.++.+++|+|
T Consensus        98 vmE~~~g~~L~~~~~~---------l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~  166 (361)
T 4f9c_A           98 AMPYLEHESFLDILNS---------LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ  166 (361)
T ss_dssp             EEECCCCCCHHHHHTT---------CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEeCCCcccHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence            999998 599999854         8899999999999   899999999999999    77766 777888888775

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.78  E-value=1.4e-20  Score=208.62  Aligned_cols=135  Identities=18%  Similarity=0.194  Sum_probs=114.0

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||.||++ ++.+|+.||||++..   ...+.+.+|+..|.. ++|||||+++++|.+...+|||||||
T Consensus       158 ~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~-l~hpnIv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          158 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSV-LRHPTLVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHH-TCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             ccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEEeec
Confidence            3999999999999998884 778899999997753   234467789976655 49999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC--CCCchhhhhhhhc
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD--GHPSPLLLSLMRL  548 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~--G~p~~~l~~Lmrd  548 (549)
                      . |+|.++|..     ..+.+++..++.++.|+   |+|||+++|+|||||    |++.+  |+.++.+++|++-
T Consensus       237 ~gg~L~~~i~~-----~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~  306 (573)
T 3uto_A          237 SGGELFEKVAD-----EHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH  306 (573)
T ss_dssp             CCCBHHHHHTC-----TTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred             CCCcHHHHHHH-----hCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence            8 599999965     23579999999999999   889999999999999    66644  7777778777653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.3e-18  Score=179.99  Aligned_cols=206  Identities=16%  Similarity=0.157  Sum_probs=131.2

Q ss_pred             ceeeec-CCcchhhhccc-cccccCCcchhhhhhcCCCcc-------------cccceeecceeeEEEEEEccccceeee
Q 042769           34 SFFIDC-GEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHIT-------------EEGAVTLGSKTTTVFVLEAKTGRLIRT   98 (549)
Q Consensus        34 ~~~~~~-~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~-------------~dg~v~~Gsk~~~~~~vda~tG~~~~~   98 (549)
                      ..++.. ..||.||+++. +|.++|++++++++.+||++.             .||+||+|++++++||||+.||+++|+
T Consensus        57 ~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~  136 (339)
T 2be1_A           57 ETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISA  136 (339)
T ss_dssp             EEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEE
T ss_pred             cEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            345555 58999999999 999999999999999999882             599999999999999999999999999


Q ss_pred             cCCCCCCcccc--chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhh
Q 042769           99 YGSPHSSSTLQ--NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus        99 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      |+.......+.  .+.|...  ++             .....    ..+.|||||++|.|++.+ ++|. +||++++++.
T Consensus       137 ~~~~~~~~~~~~~~e~~~~~--~d-------------~~~d~----~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~  195 (339)
T 2be1_A          137 FGPGSKNGYFGSQSVDCSPE--EK-------------IKLQE----CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQ  195 (339)
T ss_dssp             ESTTCBCC---------------------------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEE
T ss_pred             EecCCCcccccccccccccc--cc-------------ccccc----CCCeEEEecceEEEEEEC-CCCC-eEEEeccccc
Confidence            99864211111  1112210  00             00000    126899999999999999 5897 9999999987


Q ss_pred             hhhhccc--------cCCcccccccccc-cccCcc-----c-ccCCCccccccchhHHHHhhhccCCCCccccCCCCCCC
Q 042769          177 YAFLCQD--------FENPFIGATMNTS-YELGPE-----I-GHDFDLPFACQSKGIIQRFRKHNNSDSSRRDNHGKPKM  241 (549)
Q Consensus       177 a~~~~~~--------~~~~~~~~~~~~~-~~l~~~-----w-~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  241 (549)
                      ......+        .++..++.+.++. ++++..     | ++++.+|++.     ++..-.+.        ...+.+.
T Consensus       196 ~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~l~sPv~~-----~~dv~~~~--------~~g~~v~  262 (339)
T 2be1_A          196 QNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGIIVG-----LFDVFNDL--------RTNENIL  262 (339)
T ss_dssp             CCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEEECCCCSSCEEE-----EEEEEEET--------TTTEEEE
T ss_pred             ccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEEEeecCCCCeEE-----EEEEEEec--------CCCCEEE
Confidence            6544311        1123334444555 677643     9 8999999986     11111110        0111233


Q ss_pred             CCCCCCCCccccccccccccccccC-CCCcceeecCC
Q 042769          242 LPAPAPDPMAFMQPKADKLSELHHN-DGGEGVLTLPP  277 (549)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~y~~~~  277 (549)
                      ++.|...   +..+ ......+|++ ..++.+||+-.
T Consensus       263 ~~~P~~~---~~~~-~~~~~~v~v~~t~~G~~~Als~  295 (339)
T 2be1_A          263 VPHPFNP---GDHE-SISSNKVYLDQTSNLSWFALSS  295 (339)
T ss_dssp             EECCCCC------------CCEEEEECTTCCEEEEET
T ss_pred             ecCCCcc---cccc-cccCCeEEEEECCCCcEEEecC
Confidence            4444210   0011 1225678886 66899999854

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.74  E-value=1.7e-19  Score=188.08  Aligned_cols=137  Identities=23%  Similarity=0.253  Sum_probs=116.4

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.++||+|+||+||++ ...+|+.||||++.+.      ......+|...+....+||||+++++++.+.+.+
T Consensus        21 ~~~~-y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~   99 (353)
T 3txo_A           21 GIDN-FEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRL   99 (353)
T ss_dssp             --CC-EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             chhh-eEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEE
Confidence            3444 999999999999999884 6678999999976543      2234567886776666899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++++
T Consensus       100 ~lv~E~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~  172 (353)
T 3txo_A          100 FFVMEFVNGGDLMFHIQK------SRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCK  172 (353)
T ss_dssp             EEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEEeCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEcccccee
Confidence            99999998 599999987      4569999999999999   889999999999999    89999999988888765

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.73  E-value=2.8e-19  Score=184.32  Aligned_cols=137  Identities=23%  Similarity=0.321  Sum_probs=117.3

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ..+++ |++.+.||+|+||.||.+ +..+|+.||||++...     ..+.+.+|+..|..+ +||||+++++++...+..
T Consensus        12 ~~~~~-y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~   89 (328)
T 3fe3_A           12 PHIGN-YRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL-NHPNIVKLFEVIETEKTL   89 (328)
T ss_dssp             CEETT-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEE
T ss_pred             CccCC-EEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCEE
Confidence            34555 999999999999998884 6688999999977532     334567899666554 999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||. |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++++
T Consensus        90 ~lv~e~~~~~~L~~~l~~------~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  162 (328)
T 3fe3_A           90 YLIMEYASGGEVFDYLVA------HGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSN  162 (328)
T ss_dssp             EEEECCCTTCBHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCG
T ss_pred             EEEEECCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCce
Confidence            99999997 599999987      4569999999999999   889999999999999    88999998888887765

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.73  E-value=2.2e-19  Score=186.64  Aligned_cols=137  Identities=23%  Similarity=0.255  Sum_probs=116.6

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||++ ...+|+.||||++.+..      .....+|...+....+||||+++++++.+.+.+
T Consensus        15 ~~~~-y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           15 KIED-FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             -CTT-EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             ChHH-eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            3444 999999999999999884 56789999999776542      234567776776666999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus        94 ~lv~E~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~  166 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQS------CHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCK  166 (345)
T ss_dssp             EEEEECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEEeCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence            99999997 599999987      4568999999999999   889999999999999    88999999888887765

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.72  E-value=7.8e-19  Score=182.70  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=116.7

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+++ |++.+.||+|+||.||.+ ...+|+.||||++.+..      .+...+|+..|. .++||||+++++++.+...
T Consensus        38 ~~~~~-y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~-~l~hp~iv~~~~~~~~~~~  115 (350)
T 1rdq_E           38 AQLDQ-FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ-AVNFPFLVKLEFSFKDNSN  115 (350)
T ss_dssp             CCGGG-EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT-TCCCTTBCCEEEEEECSSE
T ss_pred             CCHHH-CEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHH-hCCCCCCCeEEEEEEcCCE
Confidence            34455 999999999999998884 66789999999775432      234567886654 4599999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|+|||||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus       116 ~~lv~e~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~  189 (350)
T 1rdq_E          116 LYMVMEYVAGGEMFSHLRR------IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAK  189 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEcCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccce
Confidence            999999997 599999987      4568999999999999   899999999999999    88999999888887765


Q ss_pred             c
Q 042769          548 L  548 (549)
Q Consensus       548 d  548 (549)
                      .
T Consensus       190 ~  190 (350)
T 1rdq_E          190 R  190 (350)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.72  E-value=7.2e-19  Score=182.50  Aligned_cols=136  Identities=20%  Similarity=0.163  Sum_probs=117.2

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+ |++.+.||+|+||.||++ ...+++.||||++.+.      ......+|...+..+.+||||+++++++.+....|
T Consensus         8 ~~~-y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   86 (345)
T 3a8x_A            8 LQD-FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF   86 (345)
T ss_dssp             GGG-EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             hhh-eEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEE
Confidence            444 999999999999998884 5677999999987643      23345678877766669999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus        87 lv~e~~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~  158 (345)
T 3a8x_A           87 FVIEYVNGGDLMFHMQR------QRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK  158 (345)
T ss_dssp             EEECCCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCB
T ss_pred             EEEeCCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccc
Confidence            9999997 599999987      4569999999999999   889999999999999    88999999998888775

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.72  E-value=6.6e-19  Score=180.75  Aligned_cols=135  Identities=24%  Similarity=0.283  Sum_probs=114.2

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+ |++.+.||+|+||.||+ ....+|+.||+|++.+..      .+...+|...+ +.++||||+++++++.+....|
T Consensus         5 ~~~-y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            5 LQD-FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML-SIVTHPFIIRMWGTFQDAQQIF   82 (318)
T ss_dssp             GGG-EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCBTTBCCEEEEEECSSEEE
T ss_pred             hHH-cEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH-hhCCCCCCceEeEEEEeCCEEE
Confidence            344 99999999999999988 466789999999776532      22455677555 4559999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus        83 lv~e~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~  154 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRK------SQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAK  154 (318)
T ss_dssp             EEECCCCSCBHHHHHHH------TSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             EEEeCCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcce
Confidence            9999998 599999987      4568999999999999   889999999999999    88999998888877765

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.72  E-value=5.3e-19  Score=183.08  Aligned_cols=132  Identities=23%  Similarity=0.222  Sum_probs=113.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||+||++ ...+|+.||||++.+..      .....+|+..|.. ++||||+++++++...+.+|+|||
T Consensus         7 y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~l~~~~~~~~~~~lv~E   85 (337)
T 1o6l_A            7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKYAFQTHDRLCFVME   85 (337)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHh-CCCCcCcceEEEEEeCCEEEEEEe
Confidence            999999999999999884 66789999999776531      2345678866654 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus        86 ~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~  153 (337)
T 1o6l_A           86 YANGGELFFHLSR------ERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCK  153 (337)
T ss_dssp             CCTTCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             CCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchh
Confidence            998 599999987      4568999999999999   889999999999999    88999999888887765

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.71  E-value=5.7e-19  Score=187.12  Aligned_cols=133  Identities=20%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||+||++ ...+++.||||++.+.      ......+|...+..+.+|||||++++++.+.+.+|||||
T Consensus        54 y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E  133 (396)
T 4dc2_A           54 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIE  133 (396)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEE
Confidence            999999999999999884 6677899999987643      123456788777777799999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++++
T Consensus       134 ~~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~  201 (396)
T 4dc2_A          134 YVNGGDLMFHMQR------QRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK  201 (396)
T ss_dssp             CCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             cCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceee
Confidence            998 599999987      4579999999999999   889999999999999    89999999988888775

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.71  E-value=7.9e-19  Score=188.44  Aligned_cols=138  Identities=22%  Similarity=0.248  Sum_probs=108.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND-----  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----  472 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+++.||||++..     .....+.+|+..|..+ +|||||++++++..     
T Consensus        50 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~  128 (458)
T 3rp9_A           50 QIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRL-NHDHVVKVLDIVIPKDVEK  128 (458)
T ss_dssp             CSCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCTTT
T ss_pred             ccCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhC-CCCCCCceEEEEecCCccc
Confidence            44556999999999999999884 677899999997753     2344677899776555 99999999999843     


Q ss_pred             cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          473 KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       473 ~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ...+|+||||+.|+|.++++.      ...+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|
T Consensus       129 ~~~~~lv~e~~~~~L~~~~~~------~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          129 FDELYVVLEIADSDFKKLFRT------PVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             CCCEEEEECCCSEEHHHHHHS------SCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CceEEEEEeccccchhhhccc------CCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeeccccc
Confidence            357999999999999999976      5579999999999999   899999999999999    899999999988888


Q ss_pred             hhc
Q 042769          546 MRL  548 (549)
Q Consensus       546 mrd  548 (549)
                      +|.
T Consensus       203 a~~  205 (458)
T 3rp9_A          203 ART  205 (458)
T ss_dssp             CBC
T ss_pred             chh
Confidence            763

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.71  E-value=6.2e-19  Score=182.61  Aligned_cols=137  Identities=24%  Similarity=0.296  Sum_probs=116.5

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+++ |.+.+.||+|+||.||.+ +..+++.||||++.+..      ...+.+|+..+ +.++||||+++++++.....
T Consensus         6 ~~i~~-Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hpnIv~l~~~~~~~~~   83 (336)
T 3h4j_B            6 RHIGP-YIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL-KLLRHPHIIKLYDVITTPTD   83 (336)
T ss_dssp             SEETT-EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHH-TTCCCTTBCCEEEEEECSSE
T ss_pred             cccCC-EEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHH-HhCCCCCCCeEEEEEEeCCE
Confidence            45566 999999999999998884 56789999999765431      23567888665 45599999999999999999


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|+||||+.|+|.+++..      .+.+++..++.++.|+   |.|||+++|+|||||    |++.+|..++.++++++
T Consensus        84 ~~lv~E~~~g~l~~~l~~------~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~  156 (336)
T 3h4j_B           84 IVMVIEYAGGELFDYIVE------KKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSN  156 (336)
T ss_dssp             EEEEECCCCEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTB
T ss_pred             EEEEEECCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccce
Confidence            999999999999999987      4569999999999999   899999999999999    88999988888777654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.71  E-value=1.3e-18  Score=177.36  Aligned_cols=138  Identities=22%  Similarity=0.283  Sum_probs=114.8

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.+.|++.+.||+|+||+||.+...+|+.||+|++....     ...+.+|+..+..+ +||||+++++++......|+
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l   96 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKEL-HHPNIVSLIDVIHSERCLTL   96 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHC-CCTTBCCEEEEECCSSCEEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHc-CCCCEeeeeeEEccCCEEEE
Confidence            3445599999999999999888655578999999775431     23567898766555 99999999999999999999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||+|+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++.++++++
T Consensus        97 v~e~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  167 (311)
T 3niz_A           97 VFEFMEKDLKKVLDEN-----KTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR  167 (311)
T ss_dssp             EEECCSEEHHHHHHTC-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEcCCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCce
Confidence            9999999999988762     3458999999999999   889999999999999    88999988887777664

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.71  E-value=7.2e-19  Score=177.61  Aligned_cols=139  Identities=18%  Similarity=0.249  Sum_probs=116.9

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +..+.+.|++.+.||+|+||.||.+ +..+++.||+|++..      .....+.+|+..+.. ++||||+++++++...+
T Consensus         6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~   84 (294)
T 4eqm_A            6 GKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQ-LSHQNIVSMIDVDEEDD   84 (294)
T ss_dssp             SSCEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTT-CCBTTBCCEEEEEECSS
T ss_pred             hhHhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhc-CCCCCCceEEEeeeeCC
Confidence            3455666999999999999998884 667899999997632      233456788866544 49999999999999999


Q ss_pred             eEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|+|||||+| +|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|++++..+.++
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~  158 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIES------HGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIA  158 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSS
T ss_pred             eEEEEEeCCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCc
Confidence            99999999975 99999987      4568999999999999   889999999999999    8889998888777765


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       159 ~  159 (294)
T 4eqm_A          159 K  159 (294)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.71  E-value=1.3e-18  Score=183.57  Aligned_cols=136  Identities=23%  Similarity=0.259  Sum_probs=116.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||.+ ...+++.||+|++.+..      ...+.+|+..|..+ +|||||++++++.+....
T Consensus        13 ~~~~-y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l-~hp~Iv~l~~~~~~~~~~   90 (384)
T 4fr4_A           13 NFDH-FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL-EHPFLVNLWYSFQDEEDM   90 (384)
T ss_dssp             CGGG-EEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEE
T ss_pred             ChHH-eEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCEE
Confidence            3444 999999999999999884 66778999999765432      23566888666555 999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|+.++..+++++
T Consensus        91 ~lv~e~~~gg~L~~~l~~------~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~  163 (384)
T 4fr4_A           91 FMVVDLLLGGDLRYHLQQ------NVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAA  163 (384)
T ss_dssp             EEEECCCTTEEHHHHHHT------TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEecCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceee
Confidence            99999997 599999987      5579999999999999   889999999999999    88999999888887765

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.71  E-value=9.7e-19  Score=186.14  Aligned_cols=131  Identities=20%  Similarity=0.189  Sum_probs=112.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||+||++ ...+++.||+|++.+..      ...+.+|+..+ +.++|||||++++++.+...+|||||
T Consensus        71 y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il-~~l~hp~Iv~l~~~~~~~~~~~lV~E  149 (410)
T 3v8s_A           71 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM-AFANSPWVVQLFYAFQDDRYLYMVME  149 (410)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHH-HHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHH-HhCCCCCCCeEEEEEEECCEEEEEEe
Confidence            999999999999999884 66779999999775431      22355777555 45599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.++++.       ..+++..++.++.|+   |+|||+++|+|||||    |++.+|++++..+++++
T Consensus       150 ~~~gg~L~~~l~~-------~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~  216 (410)
T 3v8s_A          150 YMPGGDLVNLMSN-------YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM  216 (410)
T ss_dssp             CCTTEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCCCcHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence            997 599999876       358999999999999   889999999999999    89999999988888765

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.71  E-value=1.1e-18  Score=177.81  Aligned_cols=142  Identities=21%  Similarity=0.208  Sum_probs=118.2

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ...+.+.|++.++||+|+||+||++ ...+|+.||||++..     ........|+..+....+||||++++++|...+.
T Consensus        52 ~~~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~  131 (311)
T 3p1a_A           52 ESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGI  131 (311)
T ss_dssp             SCHHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTE
T ss_pred             cchhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCE
Confidence            3344456999999999999998884 556899999997642     1233455666667777799999999999999999


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      .|+|||||.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++.++++++.
T Consensus       132 ~~lv~e~~~~~L~~~~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~  206 (311)
T 3p1a_A          132 LYLQTELCGPSLQQHCEAW-----GASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVE  206 (311)
T ss_dssp             EEEEEECCCCBHHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEE
T ss_pred             EEEEEeccCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeee
Confidence            9999999999999998772     3468999999999999   899999999999999    889999998888877653

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.70  E-value=6.5e-19  Score=183.64  Aligned_cols=137  Identities=23%  Similarity=0.226  Sum_probs=115.9

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||++ ...+|+.||||++.+..      .....+|...+....+||||+++++++.+.+..
T Consensus        18 ~~~~-y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~   96 (353)
T 2i0e_A           18 KLTD-FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL   96 (353)
T ss_dssp             -CTT-EEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEE
T ss_pred             chHH-cEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEE
Confidence            3444 999999999999999884 56678999999776542      234557776666655899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus        97 ~lv~E~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~  169 (353)
T 2i0e_A           97 YFVMEYVNGGDLMYHIQQ------VGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  169 (353)
T ss_dssp             EEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEEeCCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCccc
Confidence            99999997 599999987      4569999999999999   889999999999999    88999999888888765

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.70  E-value=1.4e-18  Score=184.90  Aligned_cols=134  Identities=17%  Similarity=0.124  Sum_probs=113.7

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.++||+|+||+||++ .+.+|+.||||++.+.      ....+.+|...+.. ++||||+++++++.+.+.+||||
T Consensus        62 ~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~-~~hp~Iv~l~~~~~~~~~~~lVm  140 (412)
T 2vd5_A           62 DFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVN-GDRRWITQLHFAFQDENYLYLVM  140 (412)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHH-SCTTTBCCEEEEEECSSEEEEEE
T ss_pred             hEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh-cCCCCeeeEEEEEeeCCEEEEEE
Confidence            3999999999999999884 5678999999977542      12245677766655 49999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+ |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus       141 E~~~gg~L~~~l~~~-----~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~  210 (412)
T 2vd5_A          141 EYYVGGDLLTLLSKF-----GERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCL  210 (412)
T ss_dssp             CCCCSCBHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             cCCCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence            9997 6999999862     2368999999999999   899999999999999    89999999988888764

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.70  E-value=1.8e-18  Score=185.57  Aligned_cols=134  Identities=18%  Similarity=0.138  Sum_probs=113.7

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|++.++||+|+||+||+. ...+++.||||++.+..      ...+.+|...+.. ++||||++++++|.+.+.+||||
T Consensus        75 ~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~-~~hp~Iv~l~~~~~~~~~~~lV~  153 (437)
T 4aw2_A           75 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN-GDSKWITTLHYAFQDDNNLYLVM  153 (437)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHH-SCTTTBCCEEEEEECSSEEEEEE
T ss_pred             heEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEeeCCEEEEEE
Confidence            3999999999999998884 56678999999776431      1235677755554 59999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++...     ...+++..++.++.|+   |+|||+++|||||||    |++.+|++++.++++++
T Consensus       154 Ey~~gg~L~~~l~~~-----~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~  223 (437)
T 4aw2_A          154 DYYVGGDLLTLLSKF-----EDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCL  223 (437)
T ss_dssp             CCCTTCBHHHHHHTT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             ecCCCCcHHHHHHHc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence            9997 6999999762     3569999999999999   889999999999999    89999999998888765

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.70  E-value=9.1e-19  Score=183.95  Aligned_cols=137  Identities=26%  Similarity=0.215  Sum_probs=111.4

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+.+ |++.+.||+|+||.||++ ...+++.||||++.+..      .....+|...+++.++||||+++++++.+.+.+
T Consensus        36 ~~~~-y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~  114 (373)
T 2r5t_A           36 KPSD-FHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKL  114 (373)
T ss_dssp             CGGG-EEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEE
T ss_pred             Chhh-eEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEE
Confidence            3444 999999999999999884 66778999999876432      223456665556777999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||+ |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++
T Consensus       115 ~lv~E~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~  187 (373)
T 2r5t_A          115 YFVLDYINGGELFYHLQR------ERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCK  187 (373)
T ss_dssp             EEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCG
T ss_pred             EEEEeCCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCcccc
Confidence            99999998 599999987      4568999999999999   899999999999999    88999999888887765

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.70  E-value=1.2e-18  Score=186.37  Aligned_cols=133  Identities=38%  Similarity=0.631  Sum_probs=105.3

Q ss_pred             ccceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      ..+++.|...+.||+|+||+||+++..+|+.||||++.....+.+.+|+..|.++.+|||||++++++...+..||||||
T Consensus        11 ~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~   90 (434)
T 2rio_A           11 QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL   90 (434)
T ss_dssp             CSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred             hhhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEec
Confidence            34556688889999999999988888899999999877655556788998887777999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcc-cccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          483 CTCSLDDLIQTYSDSSCN-SVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~-~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      |+|+|.+++......... ...++..++.++.|+   |+|||+++|+|||||    |++.+
T Consensus        91 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~  151 (434)
T 2rio_A           91 CNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTS  151 (434)
T ss_dssp             CSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECC
T ss_pred             CCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecC
Confidence            999999999873321111 112444567788888   899999999999999    67654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.70  E-value=1.3e-18  Score=174.96  Aligned_cols=133  Identities=25%  Similarity=0.269  Sum_probs=112.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||+||.+ ...+++.||||++...     ....+.+|+..+.. ++||||+++++++...+..|+||||
T Consensus         4 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~   82 (292)
T 3o0g_A            4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             ceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhc-CCCCCEeeEEeEEEeCCEEEEEEec
Confidence            999999999999998884 6678999999987632     22456688866554 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|+|.+++...     .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        83 ~~~~l~~~~~~~-----~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~  149 (292)
T 3o0g_A           83 CDQDLKKYFDSC-----NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLAR  149 (292)
T ss_dssp             CSEEHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccce
Confidence            999888877652     3569999999999999   889999999999999    88999988888777664

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.69  E-value=1.3e-18  Score=181.87  Aligned_cols=138  Identities=21%  Similarity=0.217  Sum_probs=113.2

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---------hhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---------HDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      ..+.+.|++.+.||+|+||.||.+ ...+|+.||+|++.+..         .+.+.+|+..|..+ +||||+++++++.+
T Consensus         8 ~~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~   86 (361)
T 2yab_A            8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV-LHPNIITLHDVYEN   86 (361)
T ss_dssp             SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTC-CCTTBCCEEEEEEC
T ss_pred             CChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhC-CCcCCCcEEEEEEe
Confidence            345566999999999999998884 66789999999876431         23467888666554 89999999999999


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC----CCch
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG----HPSP  540 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G----~p~~  540 (549)
                      ....|+|||||. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|    +.++
T Consensus        87 ~~~~~lv~e~~~gg~L~~~l~~------~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl  160 (361)
T 2yab_A           87 RTDVVLILELVSGGELFDFLAQ------KESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKL  160 (361)
T ss_dssp             SSEEEEEEECCCSCBHHHHHTT------CSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEE
T ss_pred             CCEEEEEEEcCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEE
Confidence            999999999997 699999976      4579999999999999   889999999999999    677766    4455


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+++++
T Consensus       161 ~DFG~a~  167 (361)
T 2yab_A          161 IDFGLAH  167 (361)
T ss_dssp             CCCSSCE
T ss_pred             EecCCce
Confidence            5555543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.69  E-value=2.4e-18  Score=183.72  Aligned_cols=138  Identities=23%  Similarity=0.285  Sum_probs=117.8

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~----  473 (549)
                      .+.+.|++.+.||+|+||.||.+ ...+++.||||++..     .....+.+|+..|..+ +||||+++++++...    
T Consensus        23 ~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~  101 (432)
T 3n9x_A           23 HVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL-KSDYIIRLYDLIIPDDLLK  101 (432)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCTTT
T ss_pred             eecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHc-CCCCcceEEEEEecCCCCc
Confidence            45556999999999999998884 677899999997753     2334677899766555 999999999998776    


Q ss_pred             -ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 -DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 -~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ..+|+|||||+|+|.++++.      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+++
T Consensus       102 ~~~~~lv~e~~~~~L~~~~~~------~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGl  175 (432)
T 3n9x_A          102 FDELYIVLEIADSDLKKLFKT------PIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGL  175 (432)
T ss_dssp             CCCEEEEEECCSEEHHHHHHS------SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CCeEEEEEecCCcCHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence             56999999999999999977      4569999999999999   889999999999999    899999999888888


Q ss_pred             hhc
Q 042769          546 MRL  548 (549)
Q Consensus       546 mrd  548 (549)
                      ++.
T Consensus       176 a~~  178 (432)
T 3n9x_A          176 ART  178 (432)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            763

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.69  E-value=1.8e-18  Score=179.45  Aligned_cols=144  Identities=19%  Similarity=0.129  Sum_probs=112.6

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH--------hhhhHHHHHHHHhcCCCCCeeEEeeecc
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--------HDVAFKEIQNLIASDQHPNIVRWYGVEN  471 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~  471 (549)
                      ....+.+.|++.+.||+|+||.||.+ +..+|+.||||++....        .+.+.+|+..+..+ +||||+++++++.
T Consensus        18 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~   96 (351)
T 3c0i_A           18 DDVLFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML-KHPHIVELLETYS   96 (351)
T ss_dssp             --CCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHC-CCTTBCCEEEEEE
T ss_pred             CCCccccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhC-CCCCCCcEEEEEE
Confidence            33455666999999999999998884 66789999999765431        23567888666554 9999999999999


Q ss_pred             CcceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cch
Q 042769          472 DKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSP  540 (549)
Q Consensus       472 ~~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~  540 (549)
                      ..+..|+|||||+ |+|.+++.....  ....+++..++.++.|+   |+|||+++|+|||||    |++.++.   .++
T Consensus        97 ~~~~~~lv~e~~~g~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl  174 (351)
T 3c0i_A           97 SDGMLYMVFEFMDGADLCFEIVKRAD--AGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKL  174 (351)
T ss_dssp             ETTEEEEEEECCSSCBHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEE
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEE
Confidence            9999999999998 599888876321  12358899999999999   899999999999999    7776655   455


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+++
T Consensus       175 ~Dfg~a~  181 (351)
T 3c0i_A          175 GGFGVAI  181 (351)
T ss_dssp             CCCTTCE
T ss_pred             ecCccee
Confidence            5555543

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.69  E-value=1.9e-18  Score=181.37  Aligned_cols=134  Identities=24%  Similarity=0.298  Sum_probs=107.2

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--eEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--FVYL  478 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--~~yL  478 (549)
                      +.|++.+.||+|+||.||.+ +..+|+.||||++..     .......+|+..+..+.+||||+++++++...+  .+|+
T Consensus         9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~l   88 (388)
T 3oz6_A            9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYL   88 (388)
T ss_dssp             TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEE
T ss_pred             CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEE
Confidence            34999999999999998884 678899999997642     234456789977777756999999999987544  7999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||+|+|.++++.       ..+++..+..++.|+   |+|||+++|+|||||    |++.+|+.++..++++|
T Consensus        89 v~e~~~~~L~~~~~~-------~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  157 (388)
T 3oz6_A           89 VFDYMETDLHAVIRA-------NILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSR  157 (388)
T ss_dssp             EEECCSEEHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EecccCcCHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccc
Confidence            999999999999876       358888999999999   899999999999999    89999999988888775

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.69  E-value=1.5e-18  Score=175.68  Aligned_cols=133  Identities=24%  Similarity=0.324  Sum_probs=112.6

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.+.||+|+||+||.+ +..+|+.||||++...   ..+.+.+|+..+.. ++||||+++++++...+..|+||||
T Consensus        20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhc-CCCCCCCeEeEEEEECCEEEEEEEC
Confidence            34999999999999998884 6778999999977543   23346678866555 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |. |+|.+++..       ..+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        99 ~~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  164 (297)
T 3fxz_A           99 LAGGSLTDVVTE-------TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCA  164 (297)
T ss_dssp             CTTCBHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCCCHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCce
Confidence            97 599999976       358899999999999   899999999999999    88899988888777654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.69  E-value=1.5e-18  Score=177.24  Aligned_cols=139  Identities=21%  Similarity=0.189  Sum_probs=103.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||+|+||.||.+ ...+|+.||+|++...    ....+.+|+..+.. ++||||+++++++...+..|+||||
T Consensus         6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~~~lv~e~   84 (317)
T 2pmi_A            6 QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKE-LKHENIVRLYDVIHTENKLTLVFEF   84 (317)
T ss_dssp             -------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTT-CCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred             ceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHh-cCCCCcceEEEEEEECCeEEEEEEe
Confidence            3999999999999998884 6678999999987532    12356789866655 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.|+|.+++...........+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+++++
T Consensus        85 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~  156 (317)
T 2pmi_A           85 MDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR  156 (317)
T ss_dssp             CCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCE
T ss_pred             cCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccce
Confidence            999999999874432333468899999999999   889999999999999    88999988887777654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.68  E-value=3.3e-18  Score=185.49  Aligned_cols=138  Identities=25%  Similarity=0.298  Sum_probs=116.8

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      ...+++ |.+.+.||+|+||.||.+ +..+|+.||||++.+..      ...+.+|+..+ +.++||||+++++++...+
T Consensus        12 ~~~~~~-Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l-~~l~HpnIv~l~~~~~~~~   89 (476)
T 2y94_A           12 RVKIGH-YILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL-KLFRHPHIIKLYQVISTPS   89 (476)
T ss_dssp             CCEETT-EEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHH-TTCCCTTBCCEEEEEECSS
T ss_pred             CceecC-EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH-HhCCCCCCCcEEEEEEECC
Confidence            344555 999999999999998884 66789999999775432      23566888665 4559999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|+|||||. |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.+++++
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~------~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a  163 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICK------NGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS  163 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTS------SSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSC
T ss_pred             EEEEEEeCCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccch
Confidence            9999999997 599999976      4579999999999999   889999999999999    8899998888877766


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       164 ~  164 (476)
T 2y94_A          164 N  164 (476)
T ss_dssp             E
T ss_pred             h
Confidence            4

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.68  E-value=2e-18  Score=179.49  Aligned_cols=142  Identities=12%  Similarity=0.051  Sum_probs=114.5

Q ss_pred             eeeeeecccccccCCceEEEe------eeecCchhHHHHHHHHHhhhhHHHHHHHHhc--CCCCCeeEEeeeccCcceEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE------GIYEGRPVAVKRLVRALHDVAFKEIQNLIAS--DQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~------~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~--l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ++.|.+.+.||+|+||.||++      ...+++.||||++.......+.+|++.+..+  ..|+||+++++++...+..|
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~  143 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSV  143 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEE
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcE
Confidence            455999999999999999886      4667899999988765444566666554433  23899999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-----------CCCC
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-----------DGHP  538 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-----------~G~p  538 (549)
                      ||||||+ |+|.+++...+. .....+++..++.++.|+   |+|||+++|||||||    |++.           +|.+
T Consensus       144 lv~e~~~~g~L~~~l~~~~~-~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~  222 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKN-TPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGL  222 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHT-STTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTE
T ss_pred             EEEeccCCCcHHHHHHHhhc-ccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCE
Confidence            9999997 699999986331 113569999999999999   899999999999999    7877           7888


Q ss_pred             chhhhhhhhc
Q 042769          539 SPLLLSLMRL  548 (549)
Q Consensus       539 ~~~l~~Lmrd  548 (549)
                      ++.+++++++
T Consensus       223 kl~DFG~a~~  232 (365)
T 3e7e_A          223 ALIDLGQSID  232 (365)
T ss_dssp             EECCCTTCEE
T ss_pred             EEeeCchhhh
Confidence            8888888754

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.68  E-value=2.5e-18  Score=176.55  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=109.0

Q ss_pred             eee---cccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVS---NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~---~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |++   .+.||+|+||.||.+ ...+++.||||++.+.......+|+..+..+.+||||+++++++.+....|+|||||+
T Consensus        10 y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~   89 (325)
T 3kn6_A           10 YDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN   89 (325)
T ss_dssp             EEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred             cccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccC
Confidence            555   378999999998884 6678999999988765556677899877777569999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC---CCchhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG---HPSPLLLSLM  546 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G---~p~~~l~~Lm  546 (549)
                       |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|   ..++..++++
T Consensus        90 ~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a  156 (325)
T 3kn6_A           90 GGELFERIKK------KKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFA  156 (325)
T ss_dssp             SCBHHHHHHH------CSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTC
T ss_pred             CCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccc
Confidence             599999987      5679999999999999   889999999999999    666555   4444455444

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.68  E-value=3.8e-18  Score=175.02  Aligned_cols=132  Identities=23%  Similarity=0.268  Sum_probs=111.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||++ ...+++.||||++...    ..+.+.+|+..+.. ++||||+++++++...+..|+|||||
T Consensus         9 y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~e~~   87 (323)
T 3tki_A            9 WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLFLEYC   87 (323)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHH-CCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             ceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCeEEEEEEcC
Confidence            999999999999998884 6678999999976421    23456788866555 49999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++++++
T Consensus        88 ~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~  153 (323)
T 3tki_A           88 SGGELFDRIEP------DIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLAT  153 (323)
T ss_dssp             TTEEGGGGSBT------TTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCcHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccc
Confidence            7 599999976      4569999999999999   889999999999999    88999988887777664

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.68  E-value=4.5e-18  Score=172.42  Aligned_cols=133  Identities=21%  Similarity=0.309  Sum_probs=113.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      |.+.+.||+|+||+||.. ...+++.||+|++..   .....+.+|+..+..+ +||||+++++++...+..++|||||.
T Consensus        12 ~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~~~   90 (310)
T 3s95_A           12 LIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL-EHPNVLKFIGVLYKDKRLNFITEYIK   90 (310)
T ss_dssp             EEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             eeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCcCcccEEEEEecCCeeEEEEEecC
Confidence            999999999999998884 667799999996642   3345677899666554 99999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.++++..     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        91 ~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  156 (310)
T 3s95_A           91 GGTLRGIIKSM-----DSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLAR  156 (310)
T ss_dssp             TCBHHHHHHHC-----CTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCE
T ss_pred             CCcHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccce
Confidence             5999999872     3568899999999999   899999999999999    88999998888777664

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.68  E-value=3.9e-18  Score=174.95  Aligned_cols=136  Identities=14%  Similarity=0.087  Sum_probs=111.9

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .+.|.+.+.||+|+||.||.+ ...+++.||+|.+...  ....+.+|+..+.. ++||||+++++++.+.+..|+||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~-l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNI-ARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHH-SCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHh-CCCCCCCeEeEEEecCCEEEEEEEe
Confidence            345999999999999998884 6677899999976532  23456789966654 4999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc--CCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA--DGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~--~G~p~~~l~~Lmr  547 (549)
                      |+ |+|.+++..     ....+++..++.++.|+   |.|||+++|+|||||    |++.  +|.+++..+++++
T Consensus        83 ~~g~~L~~~l~~-----~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~  152 (321)
T 1tki_A           83 ISGLDIFERINT-----SAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR  152 (321)
T ss_dssp             CCCCBHHHHHTS-----SSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCE
T ss_pred             CCCCCHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCe
Confidence            98 499999976     12468999999999999   899999999999999    6766  6777777766654

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.68  E-value=2.2e-18  Score=178.66  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=111.8

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+|+.||||++.+. .....+|++.+.++.+||||+++++++.+.+..|+||||
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~   97 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS-KRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTEL   97 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT-TCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc-cCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeC
Confidence            34455999999999999998884 6678999999988654 234567888888877899999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc-ccCCC---Cchhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW-KADGH---PSPLLLSLM  546 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll-~~~G~---p~~~l~~Lm  546 (549)
                      |. |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |+ +.+|+   .++.+++++
T Consensus        98 ~~gg~L~~~i~~------~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a  167 (342)
T 2qr7_A           98 MKGGELLDKILR------QKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFA  167 (342)
T ss_dssp             CCSCBHHHHHHT------CTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTC
T ss_pred             CCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCc
Confidence            97 599999977      4569999999999999   889999999999999    43 44444   344445444

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.68  E-value=2.4e-18  Score=172.71  Aligned_cols=133  Identities=23%  Similarity=0.283  Sum_probs=112.8

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.+...+|+.||+|++....     ...+.+|+..+.. ++||||+++++++...+..|+||||+
T Consensus         4 y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (288)
T 1ob3_A            4 YHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKE-LKHSNIVKLYDVIHTKKRLVLVFEHL   82 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG-CCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred             chhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHh-cCCCCEeeeeeEEccCCeEEEEEEec
Confidence            99999999999999888644678999999775321     2346688866655 49999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+.+++
T Consensus        83 ~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  148 (288)
T 1ob3_A           83 DQDLKKLLDVC-----EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLAR  148 (288)
T ss_dssp             SEEHHHHHHTS-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHH
T ss_pred             CCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECcccc
Confidence            99999998762     3568899999999999   889999999999999    88999998888777654

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.67  E-value=6.2e-18  Score=177.38  Aligned_cols=135  Identities=20%  Similarity=0.082  Sum_probs=113.2

Q ss_pred             eeeeeccccccc--CCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          407 KLFVSNTEIAKG--SNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       407 k~y~~~~~LG~G--~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +.|++.+.||+|  +||.||.+ ...+|+.||||++...     ....+.+|+..+.. ++|||||++++++...+..|+
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKL-FNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEE
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHh-CCCCCCCcEeEEEEECCEEEE
Confidence            349999999999  99998884 6668999999987632     23456678866554 499999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |||||. |+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+.++
T Consensus       104 v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~  175 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHF----MDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSN  175 (389)
T ss_dssp             EEECCTTCBHHHHHHHTC----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGC
T ss_pred             EEEccCCCCHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccc
Confidence            999998 69999998732    3568999999999999   899999999999999    8899998877766554

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.67  E-value=4.4e-18  Score=172.95  Aligned_cols=136  Identities=19%  Similarity=0.287  Sum_probs=107.7

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--------
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--------  474 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--------  474 (549)
                      .|++.+.||+|+||.||++ ...+|+.||||++...    ..+.+.+|+..|..+ +||||+++++++....        
T Consensus         7 ~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B            7 DFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHPGIVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             HEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSC-CCTTBCCEEEEEEECCSCHHHHHH
T ss_pred             cCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhC-CCCCEeeEEEEEEEeccchhhhhh
Confidence            3999999999999998884 5668999999987521    234577899666555 9999999999875432        


Q ss_pred             -------------------------------------------------eEEEEecccc-cchhhhhhhcccCCcccccC
Q 042769          475 -------------------------------------------------FVYLSLERCT-CSLDDLIQTYSDSSCNSVFG  504 (549)
Q Consensus       475 -------------------------------------------------~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~  504 (549)
                                                                       ..|+|||||. |+|.+++.....   ....+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~  162 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS---LEDRE  162 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS---GGGSC
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC---ccchh
Confidence                                                             3899999998 499999987331   23345


Q ss_pred             chhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          505 EDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       505 ~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +..++.++.|+   |+|||+++|+|||||    |++.+|.+++.++++++
T Consensus       163 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  212 (332)
T 3qd2_B          163 HGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVT  212 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCccc
Confidence            55678899998   889999999999999    88999988888887765

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.67  E-value=4.2e-18  Score=180.29  Aligned_cols=138  Identities=20%  Similarity=0.238  Sum_probs=111.9

Q ss_pred             ccceeeeee-cccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceE
Q 042769          403 RNVGKLFVS-NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFV  476 (549)
Q Consensus       403 ~~igk~y~~-~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~  476 (549)
                      ..+++ |.+ .++||+|+||+||.+ +..+|+.||||++..  .....+|+..+.+..+||||+++++++..    ...+
T Consensus        58 ~~~~~-y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~--~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           58 AIIDD-YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             CGGGT-EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccccc-ceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc--chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            34455 555 479999999999884 667899999998753  34567888877777799999999998865    6779


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~L  545 (549)
                      |||||||. |+|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.   +|..++.++++
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~  210 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGF  210 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred             EEEEEeCCCCcHHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEeccc
Confidence            99999997 59999998622    3468999999999999   899999999999999    7776   67788777777


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       211 a~  212 (400)
T 1nxk_A          211 AK  212 (400)
T ss_dssp             CE
T ss_pred             cc
Confidence            65

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.67  E-value=6e-18  Score=175.11  Aligned_cols=131  Identities=22%  Similarity=0.187  Sum_probs=107.0

Q ss_pred             cCCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH--HHhhhhHHHHHHHHhcC----CCCCeeEEeeeccC
Q 042769          400 AQGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--ALHDVAFKEIQNLIASD----QHPNIVRWYGVEND  472 (549)
Q Consensus       400 ~~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--~~~~~~~~Ei~~L~~~l----~HpNIVrl~g~~~~  472 (549)
                      ..+..+.+.|.+.++||+|+||.||++ ...+++.||||++..  .......+|+..+..+.    +||||+++++++..
T Consensus        28 ~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~  107 (360)
T 3llt_A           28 KKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY  107 (360)
T ss_dssp             CTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE
T ss_pred             ecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE
Confidence            345566667999999999999998884 567899999998752  23345566776655542    49999999999999


Q ss_pred             cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          473 KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       473 ~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      .+..|+|||||.++|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.
T Consensus       108 ~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~  172 (360)
T 3llt_A          108 YDHMCLIFEPLGPSLYEIITRNN----YNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDD  172 (360)
T ss_dssp             TTEEEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESC
T ss_pred             CCeeEEEEcCCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEcc
Confidence            99999999999889999998732    3458899999999999   899999999999999    6654

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.67  E-value=3.5e-18  Score=175.37  Aligned_cols=137  Identities=22%  Similarity=0.227  Sum_probs=112.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---------hhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---------HDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.+.|.+.+.||+|+||.||.+ ...+|+.||+|++....         .+.+.+|+..|..+ +||||+++++++...
T Consensus         8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~   86 (326)
T 2y0a_A            8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI-QHPNVITLHEVYENK   86 (326)
T ss_dssp             CHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECS
T ss_pred             CcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEeC
Confidence            45566999999999999998884 66789999999776421         23467888766555 999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC----CCchh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG----HPSPL  541 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G----~p~~~  541 (549)
                      ...|+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|    ..++.
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~  160 (326)
T 2y0a_A           87 TDVILILELVAGGELFDFLAE------KESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKII  160 (326)
T ss_dssp             SEEEEEEECCCSCBHHHHHTT------SSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred             CEEEEEEEcCCCCCHHHHHHh------cCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence            99999999997 599999976      4569999999999999   889999999999999    777777    44555


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+.+++
T Consensus       161 Dfg~a~  166 (326)
T 2y0a_A          161 DFGLAH  166 (326)
T ss_dssp             CCTTCE
T ss_pred             ECCCCe
Confidence            555543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.67  E-value=3.1e-18  Score=172.97  Aligned_cols=128  Identities=15%  Similarity=-0.015  Sum_probs=104.9

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .++..|++.+.||+|+||.||++ +..+|+.||||++...      ....+.+|+..+.. ++||||+++++++...+..
T Consensus        28 ~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~~~  106 (286)
T 3uqc_A           28 IANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSR-IDKPGVARVLDVVHTRAGG  106 (286)
T ss_dssp             ETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEE
T ss_pred             EecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhc-CCCCCcceeeEEEEECCcE
Confidence            44455999999999999998884 5567999999988643      12456788866644 5999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |+|||||+ ++|.++++.       + .....+..++.|+   |+|||+++|+|||||    |++.+|..++
T Consensus       107 ~lv~e~~~g~~L~~~l~~-------~-~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl  170 (286)
T 3uqc_A          107 LVVAEWIRGGSLQEVADT-------S-PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVL  170 (286)
T ss_dssp             EEEEECCCEEEHHHHHTT-------C-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEE
T ss_pred             EEEEEecCCCCHHHHHhc-------C-CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEE
Confidence            99999998 599999854       1 3445678889998   899999999999999    8888887654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.67  E-value=2.3e-18  Score=176.40  Aligned_cols=139  Identities=20%  Similarity=0.175  Sum_probs=115.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .+++.|++.+.||+|+||.||.+ ...+|+.||||++... ..+.+.+|+..+..+.+||||+++++++...+..|+|||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            6 MVGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             EETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            45566999999999999998884 5688999999977643 233567899777666699999999999999999999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC-----Cchhhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH-----PSPLLLSLMR  547 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~-----p~~~l~~Lmr  547 (549)
                      ||.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.     +++..+.+++
T Consensus        86 ~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~  158 (330)
T 2izr_A           86 LLGPSLEDLFDLC-----DRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK  158 (330)
T ss_dssp             CCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred             eCCCCHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence            9977999999862     3568999999999999   899999999999999    8888887     5555666554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.67  E-value=7.2e-18  Score=190.29  Aligned_cols=137  Identities=23%  Similarity=0.220  Sum_probs=117.4

Q ss_pred             cceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.++||+|+||.||+ ....+++.||||++.+.      .......|...|....+||||+++++++.+.+.+
T Consensus       339 ~~~~-f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          339 KLTD-FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             -CTT-EEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             cccc-eEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            4445 99999999999999988 46678899999977643      1234567776676666899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||||+ |+|.++++.      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.+++|++
T Consensus       418 ~lV~E~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~  490 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQ------VGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCK  490 (674)
T ss_dssp             EEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCE
T ss_pred             EEEEeCcCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceee
Confidence            99999997 599999987      4569999999999999   899999999999999    89999999999888765

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.67  E-value=2.7e-18  Score=174.10  Aligned_cols=136  Identities=18%  Similarity=0.238  Sum_probs=112.0

Q ss_pred             ceeeeee-cccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          405 VGKLFVS-NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       405 igk~y~~-~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.+.|.+ .+.||+|+||.||.+ +..+++.||||++...   ....+.+|+..+.++.+||||+++++++...+..|+|
T Consensus        10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv   89 (316)
T 2ac3_A           10 FEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV   89 (316)
T ss_dssp             TTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence            3445888 478999999998884 6678999999987542   2345678998887777999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~~Lm  546 (549)
                      ||||. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.   .++..+++.
T Consensus        90 ~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~  161 (316)
T 2ac3_A           90 FEKMRGGSILSHIHK------RRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLG  161 (316)
T ss_dssp             EECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCC
T ss_pred             EEcCCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCc
Confidence            99997 699999987      4568999999999999   899999999999999    7777765   444444443

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.67  E-value=9.2e-18  Score=172.20  Aligned_cols=136  Identities=24%  Similarity=0.237  Sum_probs=112.1

Q ss_pred             eeeeeecccccccCCceEEEe-eeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ...|.+.+.||+|+||.||+. ...++   ..||||++...    ....+.+|+..+..+ +||||+++++++...+..|
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~  126 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF-DHPNIIRLEGVVTRGRLAM  126 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECGGGCCE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCccE
Confidence            344999999999999998884 44444   45999987642    234577898666554 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||. |+|.++++..     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++.++++++
T Consensus       127 lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  199 (325)
T 3kul_A          127 IVTEYMENGSLDTFLRTH-----DGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR  199 (325)
T ss_dssp             EEEECCTTCBHHHHHHTT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred             EEeeCCCCCcHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCccc
Confidence            9999997 5999999762     3568999999999999   899999999999999    88999988888777664

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.66  E-value=5.6e-18  Score=173.97  Aligned_cols=133  Identities=26%  Similarity=0.224  Sum_probs=107.8

Q ss_pred             eeeecccccccCCceEEEeee----ecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          408 LFVSNTEIAKGSNGTVVYEGI----YEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~----~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .|++.+.||+|+||.||....    .+|+.||+|++.+.       ......+|+..|..+ +||||+++++++...+..
T Consensus        18 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           18 CFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV-KHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHC-CCTTBCCEEEEEECSSCE
T ss_pred             HeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhC-CCCCccceeEEEEcCCEE
Confidence            399999999999999887432    57899999976531       223456788666554 999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||. |+|.+++..      .+.+++..++.++.|+   |.|||+++|+|||||    |++.+|++++..+.+++
T Consensus        97 ~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~  169 (327)
T 3a62_A           97 YLILEYLSGGELFMQLER------EGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK  169 (327)
T ss_dssp             EEEEECCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred             EEEEeCCCCCcHHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence            99999997 599999987      4568899999999999   889999999999999    88999998888777654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.66  E-value=9.7e-18  Score=175.44  Aligned_cols=142  Identities=20%  Similarity=0.191  Sum_probs=114.7

Q ss_pred             eeeeecccccccCCceEEEee-e-------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG-I-------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~-~-------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +.|++.+.||+|+||.||++. .       .++..||||++...    ....+.+|+..+..+.+||||+++++++...+
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            449999999999999988742 2       23567999987642    23457789977766658999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      .+|+|||||. |+|.+++......          .....+++..++.++.|+   |+|||+++|+|||||    |++.+|
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~  240 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN  240 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCCC
Confidence            9999999997 5999999874311          012357888899999999   899999999999999    889999


Q ss_pred             CCchhhhhhhhc
Q 042769          537 HPSPLLLSLMRL  548 (549)
Q Consensus       537 ~p~~~l~~Lmrd  548 (549)
                      ..++..+++++.
T Consensus       241 ~~kl~DFG~a~~  252 (370)
T 2psq_A          241 VMKIADFGLARD  252 (370)
T ss_dssp             CEEECCCSSCEE
T ss_pred             CEEEccccCCcc
Confidence            998888887764

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.66  E-value=1e-17  Score=168.34  Aligned_cols=136  Identities=22%  Similarity=0.221  Sum_probs=110.6

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhc-CCCCCeeEEeeeccC----cceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIAS-DQHPNIVRWYGVEND----KDFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~-l~HpNIVrl~g~~~~----~~~~yL  478 (549)
                      .+.+.|++.+.||+|+||.||.. ..+++.||||++.........+|.+.+... ++||||+++++++..    ....|+
T Consensus         5 ~~~~~y~~~~~lg~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A            5 TVARDITLLECVGKGRYGEVWRG-SWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             CCGGGCEEEEEEEECSSEEEEEE-EETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cccCcEEEEEeeccCCCcEEEEE-EECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence            44556999999999999997764 458999999988765445555666554442 599999999998543    456899


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc--------ceeEEEeecc----ccccCCCCchhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD--------SVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH--------~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      |||||. |+|.++++.       ..+++..++.++.|+   |+|||        +++|+|||||    |++.+|.+++.+
T Consensus        84 v~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~D  156 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQL-------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIAD  156 (301)
T ss_dssp             EECCCTTCBHHHHHTT-------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECC
T ss_pred             ehhhccCCCHHHHHhh-------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEee
Confidence            999998 599999965       458899999999999   89999        9999999999    889999988887


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +++++
T Consensus       157 fg~a~  161 (301)
T 3q4u_A          157 LGLAV  161 (301)
T ss_dssp             CTTCE
T ss_pred             CCCee
Confidence            77654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.66  E-value=3.1e-18  Score=178.66  Aligned_cols=133  Identities=23%  Similarity=0.249  Sum_probs=110.4

Q ss_pred             eeeeecccccccCCceEEE-eeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          407 KLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      +.|++.+.||+|+||.||+ .+..+++.||||++...  ..+.+.+|+..+..+ +||||+++++++......|+|||||
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSL-RHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhC-CCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            3499999999999999888 46678999999987643  234567888666554 9999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC--chhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP--SPLLLSLM  546 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p--~~~l~~Lm  546 (549)
                      . |+|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.++.+  ++..++++
T Consensus        99 ~~~~L~~~l~~------~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a  165 (361)
T 3uc3_A           99 SGGELYERICN------AGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYS  165 (361)
T ss_dssp             CSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC
T ss_pred             CCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcc
Confidence            7 599999977      4569999999999999   889999999999999    77777764  44444443

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.66  E-value=6.3e-18  Score=177.12  Aligned_cols=135  Identities=24%  Similarity=0.217  Sum_probs=114.5

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|.+.+.||+|+||.||.. ...+++.||||.+...    ....+.+|+..|.. ++||||+++++++...+..|+||||
T Consensus       115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~lv~e~  193 (377)
T 3cbl_A          115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQ-YSHPNIVRLIGVCTQKQPIYIVMEL  193 (377)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTT-CCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHh-CCCCCEEEEEEEEecCCCcEEEEEc
Confidence            3899999999999998874 4457899999977532    23467789966655 4999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+ |+|.++++..     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.++++++.
T Consensus       194 ~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          194 VQGGDFLTFLRTE-----GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             CTTCBHHHHHHHH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEE
T ss_pred             CCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCcee
Confidence            97 6999999862     2458899999999999   899999999999999    889999999988888763

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.66  E-value=1e-17  Score=185.23  Aligned_cols=137  Identities=24%  Similarity=0.176  Sum_probs=115.4

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|++.++||+|+||.||.+ ...+|+.||||++.+..      ...+.+|+..|..+ +|||||++++++.+.+.+|||
T Consensus       184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l-~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKV-NSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHc-CCCCEeeEEEEEeeCCEEEEE
Confidence            33999999999999998884 66789999999775431      23456788666554 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||+ |+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++++.
T Consensus       263 mEy~~gg~L~~~l~~~~----~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~  335 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMG----QAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVH  335 (576)
T ss_dssp             ECCCCSCBHHHHHHSSS----SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEcCCCCcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEeccccee
Confidence            99997 59999997622    3458999999999999   899999999999999    899999999988887753

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.66  E-value=2.4e-18  Score=174.86  Aligned_cols=137  Identities=20%  Similarity=0.234  Sum_probs=111.7

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce-
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF-  475 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~-  475 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+++.||||++...      ....+.+|+..+ +.++||||+++++++..... 
T Consensus         9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~hp~iv~~~~~~~~~~~~   87 (311)
T 3ork_A            9 HLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNA-AALNHPAIVAVYDTGEAETPA   87 (311)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTC-CCCCCTTBCCEEEEEEEEETT
T ss_pred             eecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHH-HcCCCCCcceEEEeeeccCCC
Confidence            34455999999999999998884 6678999999987542      223466788555 44599999999999876543 


Q ss_pred             ---EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          476 ---VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       476 ---~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                         .|+|||||+ |+|.++++.      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.
T Consensus        88 ~~~~~lv~e~~~g~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg  161 (311)
T 3ork_A           88 GPLPYIVMEYVDGVTLRDIVHT------EGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFG  161 (311)
T ss_dssp             EEEEEEEEECCCEEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCS
T ss_pred             CcccEEEEecCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeecc
Confidence               499999997 599999987      4568999999999999   899999999999999    88899988877776


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       162 ~a~  164 (311)
T 3ork_A          162 IAR  164 (311)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.66  E-value=7.5e-18  Score=175.90  Aligned_cols=137  Identities=20%  Similarity=0.190  Sum_probs=112.2

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .+.+.|++.+.||+|+||.||.+ ...+|+.||+|++...     ..+.+.+|+..+..+ +||||+++++++.+.+..|
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~~~~~~~~~~~~~  104 (362)
T 2bdw_A           26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL-QHPNIVRLHDSIQEESFHY  104 (362)
T ss_dssp             HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEE
T ss_pred             CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEEeCCEEE
Confidence            34455999999999999998884 6678999999977532     234567899766555 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~~Lm  546 (549)
                      +|||||. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.++.   .++.+++++
T Consensus       105 lv~e~~~gg~L~~~l~~------~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a  178 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVA------REFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA  178 (362)
T ss_dssp             EEECCCCSCBHHHHHTT------CSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEecCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcc
Confidence            9999998 599999876      4568999999999999   889999999999999    6766543   555566655


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       179 ~  179 (362)
T 2bdw_A          179 I  179 (362)
T ss_dssp             B
T ss_pred             e
Confidence            4

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.66  E-value=6.9e-18  Score=173.16  Aligned_cols=137  Identities=20%  Similarity=0.220  Sum_probs=109.0

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ..+++ |++.+.||+|+||.||.+ +..+++.||||++...     ....+.+|+..+..+ +||||+++++++......
T Consensus        31 ~~~~~-y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~  108 (329)
T 3gbz_A           31 TSIDR-YRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL-QHRNIIELKSVIHHNHRL  108 (329)
T ss_dssp             -CGGG-EEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGC-CCTTBCCEEEEEEETTEE
T ss_pred             cchhh-EEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHc-CCCCcceEEEEEecCCEE
Confidence            34444 999999999999998884 6778999999977532     233566899666555 999999999999999999


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-----CCchhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-----HPSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-----~p~~~l~~  544 (549)
                      |+|||||.|+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.++     ..++..+.
T Consensus       109 ~lv~e~~~~~L~~~~~~------~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg  182 (329)
T 3gbz_A          109 HLIFEYAENDLKKYMDK------NPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFG  182 (329)
T ss_dssp             EEEEECCSEEHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTT
T ss_pred             EEEEecCCCCHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCC
Confidence            99999999999999987      4568999999999999   889999999999999    674433     35555555


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       183 ~a~  185 (329)
T 3gbz_A          183 LAR  185 (329)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.66  E-value=4e-18  Score=171.80  Aligned_cols=131  Identities=27%  Similarity=0.335  Sum_probs=106.6

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----------------------------HhhhhHHHHHHHHhcC
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----------------------------LHDVAFKEIQNLIASD  458 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----------------------------~~~~~~~Ei~~L~~~l  458 (549)
                      |++.+.||+|+||.||.+ +..+++.||||++...                             ..+.+.+|+..+..+ 
T Consensus        15 y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-   93 (298)
T 2zv2_A           15 YTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKL-   93 (298)
T ss_dssp             EEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTC-
T ss_pred             eEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhC-
Confidence            999999999999998884 6678999999966421                             123467899766555 


Q ss_pred             CCCCeeEEeeeccC--cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc--
Q 042769          459 QHPNIVRWYGVEND--KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS--  530 (549)
Q Consensus       459 ~HpNIVrl~g~~~~--~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK--  530 (549)
                      +||||+++++++..  ....|+|||||+ |+|.+++..       ..+++..++.++.|+   |+|||+++|+|||||  
T Consensus        94 ~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~  166 (298)
T 2zv2_A           94 DHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL-------KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPS  166 (298)
T ss_dssp             CCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGG
T ss_pred             CCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHH
Confidence            99999999999886  568999999998 588876543       468999999999999   899999999999999  


Q ss_pred             --ccccCCCCchhhhhhhh
Q 042769          531 --LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       531 --Ll~~~G~p~~~l~~Lmr  547 (549)
                        |++.+|.+++..+.+++
T Consensus       167 Nil~~~~~~~kl~Dfg~~~  185 (298)
T 2zv2_A          167 NLLVGEDGHIKIADFGVSN  185 (298)
T ss_dssp             GEEECTTSCEEECCCTTCE
T ss_pred             HEEECCCCCEEEecCCCcc
Confidence              88999988888777765

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.66  E-value=3.8e-18  Score=182.78  Aligned_cols=132  Identities=25%  Similarity=0.252  Sum_probs=108.1

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||. .+..+|+.||||++....      .....+|+..+ +.++||||+++++++...+.+|||||
T Consensus       150 y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~l~~~~~~~~~~~lv~e  228 (446)
T 4ejn_A          150 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVL-QNSRHPFLTALKYSFQTHDRLCFVME  228 (446)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CC-CCCSCTTSCCEEEEEEETTEEEEEEC
T ss_pred             cEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHH-HhCCCCeEeeEEEEEeeCCEEEEEEe
Confidence            99999999999999888 467789999999776531      23455677554 45599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+ |+|.+++..      ...+++..++.++.|+   |+|||+ ++|+|||||    |++.+|++++.++++++
T Consensus       229 ~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~  297 (446)
T 4ejn_A          229 YANGGELFFHLSR------ERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCK  297 (446)
T ss_dssp             CCSSCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCC
T ss_pred             eCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCce
Confidence            997 599999977      4568999999999999   899998 999999999    88999998888887765

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.66  E-value=4.8e-18  Score=175.44  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=113.8

Q ss_pred             eeeeecccccccCCceEEEe------eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-e
Q 042769          407 KLFVSNTEIAKGSNGTVVYE------GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-F  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~------~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~  475 (549)
                      +.|++.+.||+|+||.||.+      ...+++.||||++...    ....+.+|+..+..+.+||||+++++++...+ .
T Consensus        22 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~  101 (359)
T 3vhe_A           22 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  101 (359)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             cceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCc
Confidence            44999999999999998884      3456789999987642    23457789988877778999999999988755 4


Q ss_pred             EEEEecccc-cchhhhhhhcccCC--------------------------------------------------------
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSS--------------------------------------------------------  498 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~--------------------------------------------------------  498 (549)
                      .++|||||. |+|.++++......                                                        
T Consensus       102 ~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (359)
T 3vhe_A          102 LMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  181 (359)
T ss_dssp             CEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------------
T ss_pred             eEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhccc
Confidence            899999998 59999998743100                                                        


Q ss_pred             ----cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          499 ----CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       499 ----~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                          ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+++++
T Consensus       182 ~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  241 (359)
T 3vhe_A          182 PEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLAR  241 (359)
T ss_dssp             --CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGS
T ss_pred             ccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEecccee
Confidence                01128888999999999   899999999999999    88899998888887765

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.66  E-value=7.6e-18  Score=167.03  Aligned_cols=134  Identities=22%  Similarity=0.262  Sum_probs=112.8

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||.+...+++.||+|++...  ..+.+.+|+..+..+ +||||+++++++.+....|+|||||+ 
T Consensus        11 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (269)
T 4hcu_A           11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEH   89 (269)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             hceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCceEEEEEeCCC
Confidence            49999999999999988865557788999987653  234567899666555 99999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        90 ~~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  154 (269)
T 4hcu_A           90 GCLSDYLRTQ-----RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTR  154 (269)
T ss_dssp             CBHHHHHHTT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGG
T ss_pred             CcHHHHHHhc-----CcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccc
Confidence            5999999762     3468899999999998   899999999999999    78888888887777654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.65  E-value=5e-18  Score=181.66  Aligned_cols=118  Identities=30%  Similarity=0.587  Sum_probs=103.3

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccccch
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTCSL  487 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~GsL  487 (549)
                      .|...++||+|+||+||+++..+|+.||||++.........+|+..|..+.+|||||++++++.+....|||||||.|+|
T Consensus        25 ~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~g~L  104 (432)
T 3p23_A           25 SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATL  104 (432)
T ss_dssp             EEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCSEEH
T ss_pred             EEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCCCCH
Confidence            49999999999999988888889999999988766556678999888777689999999999999999999999999999


Q ss_pred             hhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          488 DDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       488 ~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      .+++...     ...+.+..+..++.|+   |+|||+++|+|||||
T Consensus       105 ~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK  145 (432)
T 3p23_A          105 QEYVEQK-----DFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLK  145 (432)
T ss_dssp             HHHHHSS-----SCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred             HHHHHhc-----CCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCC
Confidence            9999862     2345566777888888   899999999999999

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.65  E-value=1.5e-17  Score=165.51  Aligned_cols=137  Identities=25%  Similarity=0.341  Sum_probs=113.2

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||.. ...+|+.||||++....      .+.+.+|+..+. .++||||+++++++...+..
T Consensus         9 ~~~~-y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~-~l~h~~i~~~~~~~~~~~~~   86 (278)
T 3cok_A            9 KIED-FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHC-QLKHPSILELYNYFEDSNYV   86 (278)
T ss_dssp             SGGG-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT-TBCCTTBCCEEEEEECSSEE
T ss_pred             cccc-ceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH-hCCCCCeEeEEEEEccCCeE
Confidence            3445 999999999999998884 55789999999775432      235667886554 45999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||+ ++|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        87 ~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~  160 (278)
T 3cok_A           87 YLVLEMCHNGEMNRYLKNR-----VKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLAT  160 (278)
T ss_dssp             EEEEECCTTEEHHHHHHTC-----SSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEecCCCCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeeccee
Confidence            99999997 5999998762     3568999999999999   889999999999999    78888888777666554

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.65  E-value=4.2e-18  Score=174.36  Aligned_cols=133  Identities=19%  Similarity=0.217  Sum_probs=111.0

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |.+.+.||+|+||.||.+ ...+++.||||++....    ...+.+|+..+. .++||||+++++++...+..++|||||
T Consensus         4 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (324)
T 3mtl_A            4 YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLK-DLKHANIVTLHDIIHTEKSLTLVFEYL   82 (324)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHS-CCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred             eEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHH-hcCCCCCCeeeeEEeeCCEEEEEeccc
Confidence            999999999999998884 56689999999775332    124457886654 459999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+++++
T Consensus        83 ~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~  148 (324)
T 3mtl_A           83 DKDLKQYLDDC-----GNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR  148 (324)
T ss_dssp             SEEHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEE
T ss_pred             ccCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccc
Confidence            99999999872     3458889999999999   889999999999999    88899988877776654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.65  E-value=9e-18  Score=167.59  Aligned_cols=135  Identities=21%  Similarity=0.249  Sum_probs=111.1

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|++.+.||+|+||.||.....+++.||+|++...  ..+.+.+|+..+..+ +||||+++++++...+..|+|||||.
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~  102 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQLYGVCTKQRPIFIITEYMA  102 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred             HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcC-CCCCEeeEEEEEecCCCeEEEEeccC
Confidence            349999999999999988765556778999988753  234567888766555 89999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus       103 ~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  168 (283)
T 3gen_A          103 NGCLLNYLREM-----RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSR  168 (283)
T ss_dssp             TCBHHHHHHCG-----GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGG
T ss_pred             CCcHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccc
Confidence             5999999762     3468999999999999   889999999999999    88999988888777664

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.65  E-value=9.5e-18  Score=167.59  Aligned_cols=139  Identities=22%  Similarity=0.245  Sum_probs=110.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||.+ ...+|+.||||++...    .......|...+.+.++||||+++++++...+..|+|||
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e   86 (290)
T 3fme_A            7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME   86 (290)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEE
T ss_pred             HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEe
Confidence            34999999999999998884 6678999999977543    122344455455677799999999999999999999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+|+|.+++.....  ....+++..++.++.|+   |.|||++ +|+|||||    |++.+|.+++..+++++
T Consensus        87 ~~~~~l~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  158 (290)
T 3fme_A           87 LMDTSLDKFYKQVID--KGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISG  158 (290)
T ss_dssp             CCSEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC----
T ss_pred             hhccchHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcc
Confidence            999999888765221  23568999999999999   8999998 99999999    88888988887777654

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.65  E-value=6.7e-18  Score=182.32  Aligned_cols=133  Identities=26%  Similarity=0.324  Sum_probs=110.9

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc------
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK------  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~------  473 (549)
                      .+.|++.+.||+|+||+||.+ +..+|+.||||++..     .....+.+|+..|..+ +|||||++++++...      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV-NHKNIISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhC-CCCCCCcEEEEEccCCccccC
Confidence            345999999999999998884 677899999998753     2344677899666554 999999999998654      


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..+|||||||+|+|.+.+..        .+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.+++++
T Consensus       140 ~~~~lv~E~~~~~l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a  211 (464)
T 3ttj_A          140 QDVYLVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA  211 (464)
T ss_dssp             CEEEEEEECCSEEHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred             CeEEEEEeCCCCCHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEee
Confidence            45799999999988888754        38889999999999   889999999999999    8999999888888876


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       212 ~  212 (464)
T 3ttj_A          212 R  212 (464)
T ss_dssp             -
T ss_pred             e
Confidence            5

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.65  E-value=1.1e-17  Score=165.70  Aligned_cols=135  Identities=23%  Similarity=0.260  Sum_probs=113.0

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|++.+.||+|+||.||.+...+++.||+|++...  ..+.+.+|+..+..+ +||||+++++++......++|||||+
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (268)
T 3sxs_A            8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKL-SHPKLVKFYGVCSKEYPIYIVTEYIS   86 (268)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCceEEEEEccC
Confidence            349999999999999988765556778999987643  234567888776665 89999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+.+..+.+++
T Consensus        87 ~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           87 NGCLLNYLRSH-----GKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             TCBHHHHHHHH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEE
T ss_pred             CCcHHHHHHHc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccce
Confidence             5999999872     2458999999999999   889999999999999    88899988877776554

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.65  E-value=2.1e-17  Score=169.90  Aligned_cols=135  Identities=22%  Similarity=0.212  Sum_probs=113.8

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.|.+.+.||+|+||.||.. ...+++.||+|++...      ..+.+.+|+..+.. ++||||+++++++.+.+..|+
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS-LAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCeEEE
Confidence            345999999999999998884 5667889999976532      23456778866555 499999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||. ++|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus       119 v~e~~~~~~L~~~~~~------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  189 (335)
T 2owb_A          119 VLELCRRRSLLELHKR------RKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  189 (335)
T ss_dssp             EECCCTTCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEecCCCCCHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCce
Confidence            999998 599999877      4568999999999999   899999999999999    88899988887777664

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.1e-17  Score=170.43  Aligned_cols=140  Identities=18%  Similarity=0.227  Sum_probs=110.4

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--eE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD--FV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--~~  476 (549)
                      ..++.|.+.+.||+|+||.||.+ ...+|+.||||++....    .+...+|+..+..+ +||||+++++++....  ..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   84 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKNIVKLFAIEEETTTRHK   84 (319)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc-CCCCcceEEEEeecCCCceE
Confidence            44566999999999999998884 56679999999876432    23456888666555 9999999999987655  78


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc----ccCCCCchhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW----KADGHPSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll----~~~G~p~~~l~~  544 (549)
                      |+|||||+ |+|.+++....   ....+++..++.++.|+   |+|||+++|+|||||    |+    +.++.+++..++
T Consensus        85 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg  161 (319)
T 4euu_A           85 VLIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (319)
T ss_dssp             EEEEECCTTCBHHHHHHSGG---GTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCT
T ss_pred             EEEEeCCCCCCHHHHHHHhc---cccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCC
Confidence            99999997 59999998733   12338999999999999   899999999999999    55    555556666666


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       162 ~a~  164 (319)
T 4euu_A          162 AAR  164 (319)
T ss_dssp             TCE
T ss_pred             Cce
Confidence            554

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.65  E-value=1.3e-17  Score=173.13  Aligned_cols=136  Identities=24%  Similarity=0.298  Sum_probs=114.4

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.|...+.||+|+||.||++ +..+|+.||||++..      ...+.+.+|+..+..+ +||||+++++++...+..|+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~l  131 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RHPNTIQYRGCYLREHTAWL  131 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCeEEE
Confidence            345999999999999998884 567899999997642      2234567899766555 99999999999999999999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||.|+|.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+++++
T Consensus       132 v~e~~~g~l~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~  202 (348)
T 1u5q_A          132 VMEYCLGSASDLLEVH-----KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS  202 (348)
T ss_dssp             EEECCSEEHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred             EEecCCCCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCce
Confidence            9999999999988652     3568899999999999   899999999999999    88999988887777654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.65  E-value=2e-17  Score=164.96  Aligned_cols=135  Identities=26%  Similarity=0.287  Sum_probs=111.8

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||.+ ...+++.||+|++....      ...+.+|+..+ +.++||||+++++++.+....
T Consensus         7 ~~~~-y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l-~~l~h~~i~~~~~~~~~~~~~   84 (279)
T 3fdn_A            7 ALED-FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ-SHLRHPNILRLYGYFHDATRV   84 (279)
T ss_dssp             CGGG-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHH-TTCCCTTBCCEEEEEECSSEE
T ss_pred             eccc-EEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHH-HcCCCCCCcchhheEecCCEE
Confidence            3444 999999999999998884 66778899999764321      23466788555 445999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ++||||++ |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+.+..++++
T Consensus        85 ~lv~e~~~~~~l~~~l~~------~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~  156 (279)
T 3fdn_A           85 YLILEYAPLGTVYRELQK------LSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWS  156 (279)
T ss_dssp             EEEECCCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEE
T ss_pred             EEEEecCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEecccc
Confidence            99999998 599999987      4568999999999999   889999999999999    8889988777766654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=1.1e-17  Score=174.81  Aligned_cols=137  Identities=23%  Similarity=0.308  Sum_probs=108.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc---
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD---  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~---  474 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+|+.||||++..     .....+.+|+..|..+ +||||+++++++....   
T Consensus        22 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~l~~~~~~~~~~~  100 (367)
T 1cm8_A           22 EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHENVIGLLDVFTPDETLD  100 (367)
T ss_dssp             CCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CBTTBCCCSEEECSCSSTT
T ss_pred             eecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC-CCcCCCCceeeEecCCccc
Confidence            34556999999999999998884 667899999998743     2234567899666555 8999999999987653   


Q ss_pred             ---eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          475 ---FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       475 ---~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                         .+|+|||||.++|.++++.       ..+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..++
T Consensus       101 ~~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg  173 (367)
T 1cm8_A          101 DFTDFYLVMPFMGTDLGKLMKH-------EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFG  173 (367)
T ss_dssp             TCCCCEEEEECCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cCceEEEEEecCCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeee
Confidence               4699999998799999876       358899999999999   889999999999999    88999998888887


Q ss_pred             hhhc
Q 042769          545 LMRL  548 (549)
Q Consensus       545 Lmrd  548 (549)
                      +++.
T Consensus       174 ~a~~  177 (367)
T 1cm8_A          174 LARQ  177 (367)
T ss_dssp             TCEE
T ss_pred             cccc
Confidence            7653

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.65  E-value=1.4e-17  Score=172.01  Aligned_cols=135  Identities=21%  Similarity=0.224  Sum_probs=111.3

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH--------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.|++.+.||+|+||.||.+ ...+|+.||||++....        ...+.+|+..+..+ +||||+++++++......+
T Consensus        10 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~   88 (346)
T 1ua2_A           10 KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL-SHPNIIGLLDAFGHKSNIS   88 (346)
T ss_dssp             ---CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHC-CCTTBCCEEEEECCTTCCE
T ss_pred             cccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhC-CCCCCCeEEEEEeeCCceE
Confidence            34999999999999998884 56679999999876421        23466888666555 9999999999999999999


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus        89 lv~e~~~~~l~~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (346)
T 1ua2_A           89 LVFDFMETDLEVIIKDN-----SLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK  160 (346)
T ss_dssp             EEEECCSEEHHHHHTTC-----CSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred             EEEEcCCCCHHHHHHhc-----CcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccce
Confidence            99999999999988762     3468899999999999   899999999999999    88999998888887765

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.65  E-value=1.1e-17  Score=181.94  Aligned_cols=135  Identities=21%  Similarity=0.154  Sum_probs=114.5

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      .|.+.+.||+|+||.||.. ...+++.||||++...  ..+.+.+|+..|..+ +|||||+++++|......|||||||.
T Consensus       221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~~~~~~lv~E~~~  299 (495)
T 1opk_A          221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFMT  299 (495)
T ss_dssp             GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhc-CCCCEeeEEEEEecCCcEEEEEEccC
Confidence            3889999999999998874 4556899999988643  234577898666555 99999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       |+|.++++...    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++.++.+++
T Consensus       300 ~g~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~  366 (495)
T 1opk_A          300 YGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSR  366 (495)
T ss_dssp             TCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEE
T ss_pred             CCCHHHHHHhcC----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccce
Confidence             69999998732    3458888999999999   899999999999999    88999998888888765

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.3e-17  Score=168.04  Aligned_cols=138  Identities=20%  Similarity=0.247  Sum_probs=114.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeec--------cCcc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVE--------NDKD  474 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~--------~~~~  474 (549)
                      ..|++.++||+|+||.||.+ ...+++.||||++..   .....+.+|+..+.++.+||||+++++++        ....
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            45999999999999998884 566899999997632   23445678887777775699999999998        4556


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCCCchhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ..+++||||+|+|.+++....   ..+.+++..++.++.|+   |.|||+++  |+|||||    |++.+|.+++..+.+
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  184 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKME---SRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGS  184 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHH---TTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred             eEEEEEEecCCCHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCcc
Confidence            689999999999999987633   13468999999999999   89999999  9999999    889999888887776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       185 ~~  186 (337)
T 3ll6_A          185 AT  186 (337)
T ss_dssp             CB
T ss_pred             ce
Confidence            64

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.6e-17  Score=173.43  Aligned_cols=140  Identities=21%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             eeeeecccccccCCceEEEee------eecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|++.+.||+|+||.||++.      ..+++.||||++..    .....+.+|+..+..+ +||||+++++++......
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF-NHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSC
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhC-CCCCCCeEEEEEecCCCC
Confidence            449999999999999988732      34577899998742    2334567888666555 999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccC-CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDS-SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~-~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~~  544 (549)
                      |+|||||. |+|.+++...+.. .....+++..++.++.|+   |+|||+++|+|||||    |++.+|.   .++.+++
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG  229 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFG  229 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCc
Confidence            99999997 5999999874322 122458888999999999   899999999999999    7886665   5666666


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       230 ~a~  232 (367)
T 3l9p_A          230 MAR  232 (367)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.64  E-value=7.9e-18  Score=169.22  Aligned_cols=137  Identities=24%  Similarity=0.199  Sum_probs=111.2

Q ss_pred             ceeeeeecccccccCCceEEEe-----eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--c
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--D  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~  474 (549)
                      ..+.|++.+.||+|+||.||.+     +..+++.||||++...   ..+.+.+|+..+..+ +||||+++++++...  .
T Consensus         8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~   86 (295)
T 3ugc_A            8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIVKYKGVCYSAGRR   86 (295)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECHHHHT
T ss_pred             CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCCC
Confidence            3455999999999999998874     3457899999977532   234567899666555 999999999998654  4


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..++|||||. |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|++++..+.++
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~  161 (295)
T 3ugc_A           87 NLKLIMEYLPYGSLRDYLQKH-----KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT  161 (295)
T ss_dssp             SCEEEEECCTTCBHHHHHHHC-----GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSC
T ss_pred             ceEEEEEeCCCCCHHHHHHhc-----ccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCccc
Confidence            5899999997 5999999872     2458899999999999   899999999999999    8888888877777665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       162 ~  162 (295)
T 3ugc_A          162 K  162 (295)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.64  E-value=5.4e-18  Score=171.68  Aligned_cols=140  Identities=22%  Similarity=0.202  Sum_probs=110.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH--------hhhhHHHHHHHHhc--CCCCCeeEEeeeccC
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--------HDVAFKEIQNLIAS--DQHPNIVRWYGVEND  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--------~~~~~~Ei~~L~~~--l~HpNIVrl~g~~~~  472 (549)
                      .+.+.|++.+.||+|+||+||++ +..+|+.||||++....        .....+|+..+..+  ++||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            34456999999999999998884 66789999999875321        12345666554433  269999999999876


Q ss_pred             cc-----eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          473 KD-----FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       473 ~~-----~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      ..     ..+++|||+.|+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++
T Consensus        86 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl  161 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVDQDLRTYLDKAP----PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKL  161 (308)
T ss_dssp             CCSSSEEEEEEEEECCCCBHHHHHHTCC----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEE
T ss_pred             cCCCCceeEEEEehhhhcCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEE
Confidence            54     589999999999999998732    3348999999999999   899999999999999    8889998888


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+++
T Consensus       162 ~Dfg~a~  168 (308)
T 3g33_A          162 ADFGLAR  168 (308)
T ss_dssp             CSCSCTT
T ss_pred             eeCcccc
Confidence            7777664

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.64  E-value=2.7e-17  Score=165.16  Aligned_cols=136  Identities=22%  Similarity=0.213  Sum_probs=113.6

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ..+.|.+.+.||+|+||.||.. ...+++.||+|++...      ..+.+.+|+..+..+ +||||+++++++...+..|
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~   91 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL-AHQHVVGFHGFFEDNDFVF   91 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhC-CCCCEeeeeeeeccCCEEE
Confidence            3455999999999999998884 5567889999976432      234566788666554 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||. ++|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        92 lv~e~~~~~~L~~~~~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  163 (294)
T 2rku_A           92 VVLELCRRRSLLELHKR------RKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT  163 (294)
T ss_dssp             EEEECCTTCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEecCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCce
Confidence            9999998 599999876      4568999999999999   889999999999999    88899988877776654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.64  E-value=2.7e-17  Score=180.93  Aligned_cols=138  Identities=22%  Similarity=0.131  Sum_probs=115.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|.+.++||+|+||.||.+ ...+|+.||||++.+..      ...+.+|+..|..+ +||||+++++++.....+|+||
T Consensus       186 ~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l-~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKV-HSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             heEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhc-CCCCEeeEEEEEeeCCEEEEEE
Confidence            3999999999999999884 56789999999776432      23456788666554 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||+ |+|.+++....  .....+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++..+++++.
T Consensus       265 E~~~gg~L~~~l~~~~--~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~  338 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVD--EDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVE  338 (543)
T ss_dssp             CCCTTCBHHHHHHTSS--TTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EeccCCCHHHHHHHhh--cccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeee
Confidence            9998 59999987632  123468999999999999   889999999999999    899999999888887753

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.64  E-value=1.1e-17  Score=170.69  Aligned_cols=138  Identities=20%  Similarity=0.194  Sum_probs=112.8

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---------hhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---------HDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      ..+.+.|++.+.||+|+||.||.+ ...+|+.||+|++....         .+.+.+|+..+..+ +||||+++++++..
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~   86 (321)
T 2a2a_A            8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV-LHHNVITLHDVYEN   86 (321)
T ss_dssp             SCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEEC
T ss_pred             hhhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhC-CCCCcceEEEEEec
Confidence            345566999999999999998884 56779999999776421         23466888666555 99999999999999


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC----CCch
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG----HPSP  540 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G----~p~~  540 (549)
                      ....|+|||||. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|    +.++
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl  160 (321)
T 2a2a_A           87 RTDVVLILELVSGGELFDFLAQ------KESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKL  160 (321)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHT------CSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEE
T ss_pred             CCEEEEEEEcCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEE
Confidence            999999999997 599999976      4568999999999999   899999999999999    777777    4455


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+++
T Consensus       161 ~Dfg~~~  167 (321)
T 2a2a_A          161 IDFGLAH  167 (321)
T ss_dssp             CCCTTCE
T ss_pred             ccCccce
Confidence            5555543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.64  E-value=1.2e-16  Score=167.09  Aligned_cols=165  Identities=20%  Similarity=0.378  Sum_probs=100.9

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccc-eeeecCCcchhhhccc-cccc--cCCcchhhhhhcCCCcccccce
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNS-FFIDCGEDWGLYAHGL-LGRM--KLPQSIDDYVKTAPHITEEGAV   76 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~ly~~~~-~g~~--~~~~~~~~~v~~sP~~~~dg~v   76 (549)
                      ++|++.. +++.++              |.+..+ .|+.++.||.||++|. +|+.  +|++.+++.+.++|++..||.|
T Consensus        31 ~~W~~~~-~~~~s~--------------p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v   95 (369)
T 2hz6_A           31 IKWTLKE-DPVLQV--------------PTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGIL   95 (369)
T ss_dssp             EEEEEEC-CCSCCC--------------C-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----C
T ss_pred             EEEEecC-CCceec--------------ceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEE
Confidence            3688888 677777              666666 4777789999999999 8887  5566778889999999559999


Q ss_pred             eecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEccccee
Q 042769           77 TLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTL  156 (549)
Q Consensus        77 ~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l  156 (549)
                      |+|+.++++|++|++||+++|++..+..                           ...+| .     .+.||+++.|+.|
T Consensus        96 ~~g~~dg~v~a~D~~tG~~~w~~~~~~~---------------------------~~~~p-~-----~~~v~~~~~dg~v  142 (369)
T 2hz6_A           96 YMGKKQDIWYVIDLLTGEKQQTLSSAFA---------------------------DSLSP-S-----TSLLYLGRTEYTI  142 (369)
T ss_dssp             CCCEEEEEEEEECCC-------------------------------------------------------EEEEEEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEecCCCc---------------------------ccccc-c-----CCEEEEEecCCEE
Confidence            9999999999999999999999987531                           00222 1     2799999999999


Q ss_pred             ecccCCCCCceeeeeeehhhhhhhcccc--CCcccccccccc-cccCcc-----cccCCCccccc
Q 042769          157 QSFEPNSDNVSWSMTVAEIGYAFLCQDF--ENPFIGATMNTS-YELGPE-----IGHDFDLPFAC  213 (549)
Q Consensus       157 ~a~d~~~g~~~Wn~~~~~~~a~~~~~~~--~~~~~~~~~~~~-~~l~~~-----w~~~~~~p~~~  213 (549)
                      +|+|+++|+++|++.++.+.....+.+.  ++..++.+.++. ++++..     |..++.+|+..
T Consensus       143 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~  207 (369)
T 2hz6_A          143 TMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVA  207 (369)
T ss_dssp             ECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred             EEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEE
Confidence            9999999999999998776433322211  123344444555 666532     99999998865

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.64  E-value=1e-17  Score=173.80  Aligned_cols=139  Identities=23%  Similarity=0.280  Sum_probs=107.7

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ...+.+.|++.+.||+|+||.||.+ ...+++.||||++... ..+.+.+|+..+..+ +||||+++++++...+..++|
T Consensus        48 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~lv  126 (349)
T 2w4o_A           48 RDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRL-SHPNIIKLKEIFETPTEISLV  126 (349)
T ss_dssp             CSCGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             cccccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhC-CCCCCcceeeeEecCCeEEEE
Confidence            3445566999999999999998884 5567889999987643 233566788666555 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~Lmr  547 (549)
                      ||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.   +|..++..+++++
T Consensus       127 ~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~  199 (349)
T 2w4o_A          127 LELVTGGELFDRIVE------KGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK  199 (349)
T ss_dssp             ECCCCSCBHHHHHTT------CSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC---
T ss_pred             EEeCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCcccc
Confidence            99997 599999976      4568999999999999   899999999999999    6654   7777776666554

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.64  E-value=2.1e-17  Score=177.58  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=111.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+|+.+|+|++..     ...+.+.+|+..+..+ +|||||++++++.+.+..|
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~~~~~~   86 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL-KHPNIVRLHDSISEEGHHY   86 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHC-CBTTBCCEEEEEECSSEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCcCCCeEEEEEEECCEEE
Confidence            44556999999999999998884 677899999986542     2344577899666555 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc---cCCCCchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK---ADGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~---~~G~p~~~l~~Lm  546 (549)
                      +|||||. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++   .+|..++.+++++
T Consensus        87 lv~E~~~gg~L~~~i~~------~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a  160 (444)
T 3soa_A           87 LIFDLVTGGELFEDIVA------REYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLA  160 (444)
T ss_dssp             EEECCCBCCBHHHHHHH------CSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred             EEEEeCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence            9999998 599999987      5679999999999999   889999999999999    666   3466666666665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       161 ~  161 (444)
T 3soa_A          161 I  161 (444)
T ss_dssp             B
T ss_pred             E
Confidence            4

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.64  E-value=2e-17  Score=166.18  Aligned_cols=134  Identities=24%  Similarity=0.290  Sum_probs=111.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||.||.+ ...+|+.||||++....     ...+.+|+..+..+ +||||+++++++...+..|+||||
T Consensus         5 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~   83 (299)
T 2r3i_A            5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENKLYLVFEF   83 (299)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHc-CCCCeeeEEEEEecCCceEEEEEc
Confidence            899999999999998884 56689999999876432     23566888666554 999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +.|+|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        84 ~~~~L~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~  151 (299)
T 2r3i_A           84 LHQDLKKFMDASA----LTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR  151 (299)
T ss_dssp             CSEEHHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             ccCCHHHHHHhhh----ccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHeEEcCCCCEEECcchhhh
Confidence            9999999998732    3468888999999999   889999999999999    88899988887776654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.64  E-value=1.3e-17  Score=165.85  Aligned_cols=136  Identities=26%  Similarity=0.340  Sum_probs=112.4

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      +.+.|++.+.||+|+||.||.+ ...++..+|+|++...   ..+.+.+|+..+..+ +||||+++++++......|+||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSL-DHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhC-CCCCEeeEEEEEecCCeEEEEE
Confidence            4556999999999999998874 5667889999977643   234567888766555 9999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      |||. ++|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |+   +.++...+..+.+++
T Consensus        86 e~~~~~~L~~~~~~------~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~  157 (277)
T 3f3z_A           86 ELCTGGELFERVVH------KRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA  157 (277)
T ss_dssp             ECCCSCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             eccCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccce
Confidence            9997 599999877      4568999999999999   889999999999999    66   667777666666543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.64  E-value=1.9e-17  Score=180.20  Aligned_cols=137  Identities=23%  Similarity=0.342  Sum_probs=109.1

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----------------HhhhhHHHHHHHHhcCCCCCeeE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----------------LHDVAFKEIQNLIASDQHPNIVR  465 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----------------~~~~~~~Ei~~L~~~l~HpNIVr  465 (549)
                      ..+++.|.+.++||+|+||+||.+ ...+++.||||++...                ..+.+.+|+..|..+ +||||++
T Consensus        32 ~~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~  110 (504)
T 3q5i_A           32 GKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSL-DHPNIIK  110 (504)
T ss_dssp             SCGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTC-CCTTBCC
T ss_pred             CCcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhC-CCCCCCe
Confidence            345566999999999999998884 6677899999976532                123466888666555 9999999


Q ss_pred             EeeeccCcceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          466 WYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       466 l~g~~~~~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +++++.+....|+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.
T Consensus       111 ~~~~~~~~~~~~lv~e~~~gg~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~  184 (504)
T 3q5i_A          111 LFDVFEDKKYFYLVTEFYEGGELFEQIIN------RHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNS  184 (504)
T ss_dssp             EEEEEECSSEEEEEEECCTTCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTC
T ss_pred             EEEEEEcCCEEEEEEecCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCC
Confidence            9999999999999999997 599999977      4569999999999999   889999999999999    7777663


Q ss_pred             ---Cchhhhhhh
Q 042769          538 ---PSPLLLSLM  546 (549)
Q Consensus       538 ---p~~~l~~Lm  546 (549)
                         +++..++++
T Consensus       185 ~~~~kl~Dfg~a  196 (504)
T 3q5i_A          185 LLNIKIVDFGLS  196 (504)
T ss_dssp             CSSEEECCCTTC
T ss_pred             CccEEEEECCCC
Confidence               444455444

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.64  E-value=2.3e-17  Score=163.78  Aligned_cols=133  Identities=26%  Similarity=0.258  Sum_probs=111.8

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .|.+.+.||+|+||.||.. ...+|+.||||++....      ...+.+|+..+.. ++||||+++++++...+..|+||
T Consensus        12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           12 HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL-FRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhc-CCCCCEeEEEEEEecCCeEEEEE
Confidence            3999999999999998874 55689999999775432      2246678866655 49999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. ++|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        91 e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~  159 (276)
T 2h6d_A           91 EYVSGGELFDYICK------HGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSN  159 (276)
T ss_dssp             ECCCSCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGG
T ss_pred             eccCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeeccccc
Confidence            9997 599999987      4568899999999999   889999999999999    78888888777666554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.64  E-value=1.6e-17  Score=171.38  Aligned_cols=137  Identities=25%  Similarity=0.329  Sum_probs=112.5

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccC-----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVEND-----  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----  472 (549)
                      .+++ |++.+.||+|+||.||.+ ...+|+.||||++....     ...+.+|+..+..+ +||||+++++++..     
T Consensus        15 ~~~~-y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~   92 (351)
T 3mi9_A           15 EVSK-YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKASPY   92 (351)
T ss_dssp             BGGG-EEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHC-CCTTBCCEEEEEEEC----
T ss_pred             cccc-eeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhc-cCCCcccHhheeecccccc
Confidence            3445 999999999999998884 66789999999775431     22456898666555 99999999999876     


Q ss_pred             ---cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          473 ---KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       473 ---~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                         .+..|+|||||.|+|.+.+...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++..
T Consensus        93 ~~~~~~~~lv~e~~~~~l~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~D  167 (351)
T 3mi9_A           93 NRCKGSIYLVFDFCEHDLAGLLSNV-----LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLAD  167 (351)
T ss_dssp             ----CEEEEEEECCSEEHHHHHHCT-----TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECC
T ss_pred             ccCCceEEEEEeccCCCHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEcc
Confidence               4468999999999988888762     3468999999999999   889999999999999    889999888887


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +++++
T Consensus       168 fg~a~  172 (351)
T 3mi9_A          168 FGLAR  172 (351)
T ss_dssp             CTTCE
T ss_pred             chhcc
Confidence            77664

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.64  E-value=1.8e-17  Score=164.67  Aligned_cols=131  Identities=21%  Similarity=0.292  Sum_probs=105.2

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ...|++.+.||+|+||.||.+ ...+++.||||++..     .......+|+..+..+.+||||+++++++...+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            344999999999999998884 566899999997653     12345678887777776999999999999999999999


Q ss_pred             eccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          480 LERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       480 mE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                      ||||+| +|.+++.....  ....+++..++.++.|+   |+|||+++|+|||||    |++.+|.|
T Consensus        90 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~  154 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYR--IMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIP  154 (289)
T ss_dssp             EECCTTCBHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-----
T ss_pred             EEecCCCcHHHHHHhhcc--cccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCC
Confidence            999975 99999987321  12458999999999999   899999999999999    77766643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.64  E-value=1.6e-17  Score=170.18  Aligned_cols=133  Identities=25%  Similarity=0.270  Sum_probs=111.5

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      ..|...+.||+|+||.||.+ ...+|+.||||++....   .+.+.+|+..+.. ++||||+++++++...+..|+||||
T Consensus        45 ~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv~e~  123 (321)
T 2c30_A           45 LLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRD-YQHFNVVEMYKSYLVGEELWVLMEF  123 (321)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHh-CCCCCcceEEEEEEECCEEEEEEec
Confidence            34777789999999998884 55689999999876432   2346688866554 4999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +. |+|.+++..       ..+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+++++
T Consensus       124 ~~~~~L~~~l~~-------~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~  189 (321)
T 2c30_A          124 LQGGALTDIVSQ-------VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCA  189 (321)
T ss_dssp             CCSCBHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCCCHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeee
Confidence            97 599998865       358899999999999   899999999999999    88999998888877764

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.64  E-value=2.3e-17  Score=165.68  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=113.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHH------------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      .|++.+.||+|+||.||.+ ...+|+.||||++..            ...+.+.+|+..+.++.+||||+++++++....
T Consensus        18 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (298)
T 1phk_A           18 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT   97 (298)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             ccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccCC
Confidence            3999999999999998884 566889999997632            123456688877777756999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++++|||||    |++.+|..++..+.++
T Consensus        98 ~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  171 (298)
T 1phk_A           98 FFFLVFDLMKKGELFDYLTE------KVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS  171 (298)
T ss_dssp             EEEEEEECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEeccCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccch
Confidence            9999999998 599999987      4568999999999999   889999999999999    8889998877777665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       172 ~  172 (298)
T 1phk_A          172 C  172 (298)
T ss_dssp             E
T ss_pred             h
Confidence            4

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.64  E-value=2.4e-17  Score=172.79  Aligned_cols=134  Identities=22%  Similarity=0.158  Sum_probs=109.3

Q ss_pred             eeeecccccccCCceEEEe-ee---ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI---YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~---~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      .|.+.+.||+|+||.||.. ..   .++..||||++...    ....+.+|+..+.. ++||||+++++++...+..|+|
T Consensus        46 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           46 NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQ-FDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEECSSSSCEEE
T ss_pred             hceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHh-CCCCCCCeEEEEEeeCCceEEE
Confidence            3889999999999998874 33   35778999987532    23457788866654 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.++++..     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+++++
T Consensus       125 ~e~~~~~sL~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~  195 (373)
T 2qol_A          125 TEYMENGSLDSFLRKH-----DAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGR  195 (373)
T ss_dssp             EECCTTCBHHHHHHTT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             EeCCCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCcccc
Confidence            99997 6999999762     3468899999999999   899999999999999    88999998888777665

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.63  E-value=3.2e-17  Score=165.83  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=111.0

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .|++.+.||+|+||.||.+ ...+|+.||||++...     ....+.+|+..+..+ +||||+++++++...+..++|||
T Consensus         4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL-KHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhC-CCCCccchhheeecCCeEEEEEE
Confidence            3999999999999998884 6677999999976432     234566888666555 99999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||.| +|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        83 ~~~~~~l~~~~~~------~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  150 (311)
T 4agu_A           83 YCDHTVLHELDRY------QRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFAR  150 (311)
T ss_dssp             CCSEEHHHHHHHT------SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCCchHHHHHhh------hcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCch
Confidence            9985 78877765      4568999999999999   889999999999999    88889988877776654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.63  E-value=1.2e-17  Score=172.35  Aligned_cols=135  Identities=18%  Similarity=0.175  Sum_probs=114.9

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----------hhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----------HDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.|++.+.||+|+||.||++ +..+++.||||++....           ...+.+|+..+..+ +||||+++++++...
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV-EHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTC-CCTTBCCEEEEEECS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhC-CCCCEeeEEEEEeeC
Confidence            344999999999999998884 67889999999876531           22456799666555 999999999999999


Q ss_pred             ceEEEEecccc-c-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          474 DFVYLSLERCT-C-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       474 ~~~yLVmE~~~-G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      +..++||||+. | +|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~------~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg  175 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDR------HPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFG  175 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHT------CCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCT
T ss_pred             CEEEEEEEeCCCCccHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecc
Confidence            99999999985 6 99999987      4569999999999999   899999999999999    88899988888777


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       176 ~a~  178 (335)
T 3dls_A          176 SAA  178 (335)
T ss_dssp             TCE
T ss_pred             cce
Confidence            664

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.63  E-value=1.3e-17  Score=167.29  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=114.8

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ..+++.|++.+.||+|+||.||.+ ...+|+.||||++... ....+.+|+..+..+.+|+||+++++++......++||
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            6 NVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             cccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            345566999999999999998884 5678999999977533 23456788877777768999999999999999999999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC-----Cchhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH-----PSPLLLSLM  546 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~-----p~~~l~~Lm  546 (549)
                      ||+.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.     .++..+.++
T Consensus        86 e~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~  158 (298)
T 1csn_A           86 DLLGPSLEDLLDLC-----GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMV  158 (298)
T ss_dssp             ECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTC
T ss_pred             EecCCCHHHHHHHh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccc
Confidence            99977999999872     2458999999999999   899999999999999    7877776     555555544

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.63  E-value=2.6e-17  Score=167.77  Aligned_cols=135  Identities=22%  Similarity=0.230  Sum_probs=109.9

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||+|+||.||.+ ..+|+.||||++..     .....+.+|+..+.++ +||||+++++++......++||||
T Consensus        38 ~y~i~~~lG~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~lv~e~  115 (309)
T 3p86_A           38 DLNIKEKIGAGSFGTVHRA-EWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRL-RHPNIVLFMGAVTQPPNLSIVTEY  115 (309)
T ss_dssp             GEEEEEEEEECSSEEEEEE-EETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSTTCCEEEEEC
T ss_pred             HceeeeEeecCCCeEEEEE-EECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEECCceEEEEec
Confidence            3999999999999997764 45788999997653     2234567898766555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |. |+|.+++....   ....+++..++.++.|+   |+|||+++  |+|||||    |++.+|.+++..+++++
T Consensus       116 ~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~  187 (309)
T 3p86_A          116 LSRGSLYRLLHKSG---AREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSR  187 (309)
T ss_dssp             CTTCBHHHHHHSTT---HHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC---
T ss_pred             CCCCcHHHHHhhcC---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCc
Confidence            97 59999997622   12348899999999999   89999999  9999999    88999988887776653

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.63  E-value=8.1e-18  Score=174.83  Aligned_cols=137  Identities=21%  Similarity=0.189  Sum_probs=115.0

Q ss_pred             cceeeeeecccccccCCceEEEeee----ecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGI----YEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~----~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      .+++ |++.+.||+|+||.||+...    .+++.||||++...       ......+|+..|..+.+||||+++++++..
T Consensus        52 ~~~~-y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~  130 (355)
T 1vzo_A           52 GIEN-FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  130 (355)
T ss_dssp             CGGG-EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             cccc-eEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEee
Confidence            3444 99999999999999887432    47899999987642       123456788777666579999999999999


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ....|||||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|++++..+.
T Consensus       131 ~~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG  204 (355)
T 1vzo_A          131 ETKLHLILDYINGGELFTHLSQ------RERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFG  204 (355)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred             CceEEEEeecCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCC
Confidence            999999999997 599999987      4568999999999999   899999999999999    88999998888777


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       205 ~a~  207 (355)
T 1vzo_A          205 LSK  207 (355)
T ss_dssp             EEE
T ss_pred             CCe
Confidence            664

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.63  E-value=1.9e-17  Score=179.25  Aligned_cols=137  Identities=23%  Similarity=0.282  Sum_probs=112.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .+.+.|++.+.||+|+||+||.+ +..+++.||||++....     ...+.+|+..|..+ +||||+++++++......|
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~~~   97 (486)
T 3mwu_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEILEDSSSFY   97 (486)
T ss_dssp             HHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEE
T ss_pred             ChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhC-CCCCcCeEEEEEEcCCEEE
Confidence            34455999999999999998884 66789999999875432     23567899776655 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~Lm  546 (549)
                      +|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.   ++..++..++++
T Consensus        98 lv~e~~~~~~L~~~~~~------~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  171 (486)
T 3mwu_A           98 IVGELYTGGELFDEIIK------RKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLS  171 (486)
T ss_dssp             EEECCCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred             EEEEcCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence            9999997 599999877      4569999999999999   889999999999999    6643   445555555554


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       172 ~  172 (486)
T 3mwu_A          172 T  172 (486)
T ss_dssp             T
T ss_pred             e
Confidence            3

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.63  E-value=2.3e-17  Score=168.23  Aligned_cols=141  Identities=19%  Similarity=0.163  Sum_probs=114.9

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ...+.|++.+.||+|+||.||.....+++.||||++...   ..+.+.+|+..+. .++||||+++++++...+..|+||
T Consensus        36 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~  114 (321)
T 2qkw_B           36 EATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS-FCRHPHLVSLIGFCDERNEMILIY  114 (321)
T ss_dssp             CCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGG-SCCCTTBCCEEEECCCTTCCEEEE
T ss_pred             HHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHH-hCCCCCEeeEEEEEcCCCeEEEEE
Confidence            344459999999999999988865557899999976532   2345678886654 459999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++....  .....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       115 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  187 (321)
T 2qkw_B          115 KYMENGNLKRHLYGSD--LPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK  187 (321)
T ss_dssp             ECCTTCBTGGGSSSSC--CCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred             EcCCCCcHHHHHhccC--CCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence            9997 59999997632  112358889999999998   899999999999999    88999988888777664

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.63  E-value=2.3e-17  Score=166.65  Aligned_cols=139  Identities=20%  Similarity=0.237  Sum_probs=112.3

Q ss_pred             Cccceeeeee-cccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cce
Q 042769          402 GRNVGKLFVS-NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDF  475 (549)
Q Consensus       402 ~~~igk~y~~-~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~  475 (549)
                      +..+++ |.+ .+.||+|+||.||.+ ...+++.||+|++..  .....+|+..+.+..+||||+++++++..    ...
T Consensus        13 ~~~~~~-y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           13 NAIIDD-YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             SCGGGT-EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cccccc-hhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc--cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            445566 555 488999999998884 667899999998753  34567888888788899999999999876    778


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~  544 (549)
                      .|+|||||. |+|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.   ++..++..+.
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg  165 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFG  165 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCT----TCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred             EEEEEeecCCCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence            999999997 59999998732    3468999999999999   899999999999999    6776   5666666655


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       166 ~a~  168 (299)
T 3m2w_A          166 FAK  168 (299)
T ss_dssp             TCE
T ss_pred             ccc
Confidence            543

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.63  E-value=2.3e-17  Score=166.69  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=112.8

Q ss_pred             eeeeeecccccccCCceEEEe-e-----eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-G-----IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~-----~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .+.|.+.+.||+|+||.||.+ .     ..+++.||||++...    ..+.+.+|+..+..+ +||||+++++++...+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQV-NHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSS
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhC-CCCceeeEEEEEecCCc
Confidence            455999999999999998874 2     234588999987642    234567888666555 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCC------------------cccccCchhhhHHhhhe---eecccceeEEEeecc---
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSS------------------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS---  530 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~------------------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK---  530 (549)
                      .|+|||||. |+|.+++.......                  ....+++..++.++.|+   |.|||+++|+|||||   
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~N  180 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARN  180 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGG
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchhe
Confidence            999999998 69999998743210                  12348888999999999   899999999999999   


Q ss_pred             -ccccCCCCchhhhhhhh
Q 042769          531 -LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       531 -Ll~~~G~p~~~l~~Lmr  547 (549)
                       |++.+|.+++..+.+++
T Consensus       181 Ili~~~~~~kl~Dfg~~~  198 (314)
T 2ivs_A          181 ILVAEGRKMKISDFGLSR  198 (314)
T ss_dssp             EEEETTTEEEECCCTTCE
T ss_pred             EEEcCCCCEEEccccccc
Confidence             88888888877777654

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.63  E-value=4.1e-17  Score=163.04  Aligned_cols=135  Identities=25%  Similarity=0.272  Sum_probs=112.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||.+ ...+++.||+|++....      ...+.+|+..+.. ++||||+++++++...+..
T Consensus        12 ~~~~-y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~   89 (284)
T 2vgo_A           12 TIDD-FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSH-LRHPNILRMYNYFHDRKRI   89 (284)
T ss_dssp             CGGG-EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEE
T ss_pred             hhhh-ceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhc-CCCCCEeeEEEEEEcCCEE
Confidence            3444 999999999999998884 55678899999765431      2346678866554 4999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      |+||||+. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.++
T Consensus        90 ~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~  161 (284)
T 2vgo_A           90 YLMLEFAPRGELYKELQK------HGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWS  161 (284)
T ss_dssp             EEEECCCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEeCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEeccccc
Confidence            99999997 599999987      4568999999999999   889999999999999    7888888777766654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.63  E-value=4.3e-17  Score=166.70  Aligned_cols=133  Identities=20%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHHH--hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----eEEEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL--HDVAFKEIQNLIASDQHPNIVRWYGVENDKD----FVYLS  479 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~--~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----~~yLV  479 (549)
                      .+.|++.++||+|+||.||++ ...++.||||++....  .....+|+..+ +.++||||+++++++....    .+|+|
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~-~~~~~~vavK~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKA-QLLNEYVAVKIFPIQDKQSWQNEYEVYSL-PGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEE-EETTEEEEEEEECGGGHHHHHHHHHHHTS-TTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             hhhchhhheecccCceEEEEE-EECCCEEEEEEeecCchHHHHHHHHHHHH-hcCCCCCchhhcceeccCCCCCceEEEE
Confidence            345999999999999997764 4568999999876432  22344577545 4459999999999988644    47999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce----------eEEEeecc----ccccCCCCchh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV----------KVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~----------~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      ||||. |+|.++++.       ..+++..++.++.|+   |+|||+.          +|+|||||    |++.+|.+++.
T Consensus       101 ~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~  173 (322)
T 3soc_A          101 TAFHEKGSLSDFLKA-------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIA  173 (322)
T ss_dssp             EECCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEEC
T ss_pred             EecCCCCCHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEc
Confidence            99997 599999976       348899999999999   8899998          99999999    88999988888


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      ++++++
T Consensus       174 DFg~a~  179 (322)
T 3soc_A          174 DFGLAL  179 (322)
T ss_dssp             CCTTCE
T ss_pred             cCCccc
Confidence            777764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.63  E-value=2.8e-17  Score=170.97  Aligned_cols=136  Identities=21%  Similarity=0.278  Sum_probs=113.6

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      .++..|++.+.||+|+||.||.+ +..+++.||||++..    ...+.+.+|+..+..+ +||||+++++++...     
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~  102 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF-RHENIIGINDIIRAPTIEQM  102 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHC-CCTTBCCCCEEECCSSTTTC
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhc-CCCCCccceeEEecCCcccc
Confidence            34556999999999999998884 667899999998752    2234567899776555 999999999998655     


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ...|+||||+.|+|.++++.       ..+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..++++
T Consensus       103 ~~~~iv~e~~~~~L~~~l~~-------~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a  175 (364)
T 3qyz_A          103 KDVYIVQDLMETDLYKLLKT-------QHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA  175 (364)
T ss_dssp             CCEEEEEECCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEcccCcCHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcce
Confidence            36899999999999999876       358999999999999   889999999999999    8899998888777765


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       176 ~  176 (364)
T 3qyz_A          176 R  176 (364)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.63  E-value=4.2e-17  Score=167.93  Aligned_cols=136  Identities=23%  Similarity=0.302  Sum_probs=113.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      .+.+.|.+.+.||+|+||.||.+ ...+|+.||||++..    .....+.+|+..+..+ +||||+++++++...     
T Consensus         8 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~   86 (353)
T 2b9h_A            8 NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF-KHENIITIFNIQRPDSFENF   86 (353)
T ss_dssp             CSCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHC-CCTTBCCEEEECCCSCSTTC
T ss_pred             ccccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhC-cCCCcCCeeeeecccccCcc
Confidence            45556999999999999998884 566799999997752    1234566888666555 999999999987654     


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ...|++|||+.|+|.+++..       ..+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.++
T Consensus        87 ~~~~lv~e~~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a  159 (353)
T 2b9h_A           87 NEVYIIQELMQTDLHRVIST-------QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLA  159 (353)
T ss_dssp             CCEEEEECCCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEeccCccHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccc
Confidence            67999999999999999876       358899999999999   889999999999999    8899998888877765


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       160 ~  160 (353)
T 2b9h_A          160 R  160 (353)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.63  E-value=2.9e-17  Score=169.45  Aligned_cols=135  Identities=17%  Similarity=0.209  Sum_probs=111.7

Q ss_pred             ceeeeeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCC--CCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQH--PNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~H--pNIVrl~g~~~~~~~~y  477 (549)
                      .++.|++.+.||+|+||.||.....+++.||||++...     ..+.+.+|+..|..+ +|  |||+++++++......|
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL-QQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHH-TTTCTTBCCEEEEEECSSEEE
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhh-hhcCCceEEEeeeEeeCCEEE
Confidence            35669999999999999988865567889999976532     234567899777666 44  99999999999999999


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||++.|+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |+ .+|.+++.++++++
T Consensus        86 lv~e~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll-~~~~~kl~DFG~a~  155 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKK------KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIAN  155 (343)
T ss_dssp             EEECCCSEEHHHHHHH------SCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEE-ETTEEEECCCSSSC
T ss_pred             EEEeCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEE-ECCcEEEeeccccc
Confidence            9999777899999987      4578999999999999   889999999999999    55 46777776666654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.63  E-value=2.4e-17  Score=173.85  Aligned_cols=140  Identities=18%  Similarity=0.227  Sum_probs=111.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--eE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKD--FV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--~~  476 (549)
                      ..++.|.+.+.||+|+||.||.+ ...+|+.||||++....    .+...+|+..+..+ +||||+++++++....  ..
T Consensus         6 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~~   84 (396)
T 4eut_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKNIVKLFAIEEETTTRHK   84 (396)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC-CCTTBCCEEEEEECTTTCCE
T ss_pred             CCCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhc-CCCCCCeEEEeeccCCCCee
Confidence            44567999999999999998884 66779999999876432    23456888666555 9999999999987655  78


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc----ccCCCCchhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW----KADGHPSPLLLS  544 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll----~~~G~p~~~l~~  544 (549)
                      |+|||||. |+|.+++....   ....+++..++.++.|+   |+|||+++|+|||||    |+    +.++..++.+++
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG  161 (396)
T 4eut_A           85 VLIMEFCPCGSLYTVLEEPS---NAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFG  161 (396)
T ss_dssp             EEEECCCTTEEHHHHTTSGG---GTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGG
T ss_pred             EEEEecCCCCCHHHHHHhhh---cccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCC
Confidence            99999997 59999998732   12338999999999999   899999999999999    55    555556666666


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       162 ~a~  164 (396)
T 4eut_A          162 AAR  164 (396)
T ss_dssp             GCE
T ss_pred             Cce
Confidence            654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.63  E-value=3.5e-17  Score=166.90  Aligned_cols=132  Identities=19%  Similarity=0.174  Sum_probs=110.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEEEEeccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVYLSLERC  483 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~yLVmE~~  483 (549)
                      +.|++.+.||+|+||.||.+ +..+++.||||++.......+.+|+..+..+..||||+++++++..  ....++|||||
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            34999999999999998884 6778999999988755556678999887777569999999999987  66799999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~Lmr  547 (549)
                      . ++|.++++.         +++..++.++.|+   |+|||+++|+|||||    |++.+| .+++..+++++
T Consensus       116 ~~~~l~~~~~~---------~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~  179 (330)
T 3nsz_A          116 NNTDFKQLYQT---------LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  179 (330)
T ss_dssp             CCCCHHHHGGG---------CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             CchhHHHHHHh---------CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence            8 589888754         7888999999999   899999999999999    777666 56666666654

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.63  E-value=2.2e-17  Score=164.96  Aligned_cols=137  Identities=21%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .+.|++.+.||+|+||.||.+ ...+++.||+|++...  ..+.+.+|+..+..+ +||||+++++++......|+||||
T Consensus        12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~v~e~   90 (288)
T 3kfa_A           12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEF   90 (288)
T ss_dssp             GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCCEEEEEEc
Confidence            344999999999999998884 5667899999987643  234567888666555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |. |+|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        91 ~~~~~L~~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  159 (288)
T 3kfa_A           91 MTYGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSR  159 (288)
T ss_dssp             CTTEEHHHHHHHCC----TTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGG
T ss_pred             CCCCcHHHHHHhcc----cCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccce
Confidence            98 59999998733    3558889999999998   899999999999999    78888887777666554

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.63  E-value=4e-17  Score=172.06  Aligned_cols=136  Identities=17%  Similarity=0.206  Sum_probs=111.9

Q ss_pred             ceeeeeecccccccCCceEEEeeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCC-CCCeeEEeeeccCcceEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQ-HPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~~~~yL  478 (549)
                      .++.|.+.+.||+|+||.||.+...+++.||||++..     ...+.+.+|+..|..+.. ||||+++++++...+.+||
T Consensus        54 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           54 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            3456999999999999998885445589999997743     233467789977777643 6999999999999999999


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||++.|+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |+ .+|.+++..+++++
T Consensus       134 v~E~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll-~~~~~kl~DFG~a~  202 (390)
T 2zmd_A          134 VMECGNIDLNSWLKK------KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIAN  202 (390)
T ss_dssp             EEECCSEEHHHHHHH------CSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEE-SSSCEEECCCSSSC
T ss_pred             EEecCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEE-ECCeEEEEecCccc
Confidence            999767899999987      4568888999999999   889999999999999    55 56777777777664

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.63  E-value=2.2e-17  Score=173.08  Aligned_cols=142  Identities=22%  Similarity=0.228  Sum_probs=115.1

Q ss_pred             eeeeeecccccccCCceEEEe-ee-------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GI-------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~-------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.|.+.+.||+|+||.||++ ..       ..+..||||++...    ....+.+|+..+..+.+||||+++++++...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            345999999999999998874 22       22357999977542    2345778997777766999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      +..|+|||||. |+|.+++......          .....+++..++.++.|+   |+|||+++|+|||||    |++.+
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~  227 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED  227 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCC
Confidence            99999999997 5999999874311          112458999999999999   899999999999999    88999


Q ss_pred             CCCchhhhhhhh
Q 042769          536 GHPSPLLLSLMR  547 (549)
Q Consensus       536 G~p~~~l~~Lmr  547 (549)
                      |.+++.++++++
T Consensus       228 ~~~kL~DFG~a~  239 (382)
T 3tt0_A          228 NVMKIADFGLAR  239 (382)
T ss_dssp             CCEEECSCSCCC
T ss_pred             CcEEEcccCccc
Confidence            998888887765

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.63  E-value=2e-17  Score=178.82  Aligned_cols=138  Identities=27%  Similarity=0.337  Sum_probs=114.1

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.+.|++.+.||+|+||.||.+ +..+|+.||||++...      ....+.+|+..+..+ +||||+++++++...+.
T Consensus        22 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~~  100 (484)
T 3nyv_A           22 AIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL-DHPNIMKLYEFFEDKGY  100 (484)
T ss_dssp             CCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSE
T ss_pred             CcccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC-CCCCCCcEEEEEEeCCE
Confidence            345566999999999999998884 6678999999987543      233567899666555 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLS  544 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~  544 (549)
                      .|+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |+   +.+|..++..++
T Consensus       101 ~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg  174 (484)
T 3nyv_A          101 FYLVGEVYTGGELFDEIIS------RKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFG  174 (484)
T ss_dssp             EEEEECCCCSCBHHHHHHT------CSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTT
T ss_pred             EEEEEecCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeee
Confidence            999999997 599999977      4569999999999999   889999999999999    66   456667666666


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       175 ~a~  177 (484)
T 3nyv_A          175 LST  177 (484)
T ss_dssp             HHH
T ss_pred             eeE
Confidence            553

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.62  E-value=1.1e-17  Score=175.23  Aligned_cols=137  Identities=15%  Similarity=0.198  Sum_probs=108.2

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeecc--------------
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEN--------------  471 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~--------------  471 (549)
                      +.|++.+.||+|+||.||.+ +..+|+.||||++... .....+|+..|. .++||||+++++++.              
T Consensus         7 ~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~-~~~~~~E~~il~-~l~hpnIv~l~~~~~~~~~~~~~~~~~~~   84 (383)
T 3eb0_A            7 KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD-PRYKNRELDIMK-VLDHVNIIKLVDYFYTTGDEEPKPPQPPD   84 (383)
T ss_dssp             TTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC-TTSCCHHHHHHT-TCCCTTBCCEEEEEEEC------------
T ss_pred             ceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC-cchHHHHHHHHH-HcCCCCccchhheeeecCccccccccccc
Confidence            34999999999999998884 6788999999977543 234558886654 459999999999983              


Q ss_pred             ------------------------CcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeE
Q 042769          472 ------------------------DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKV  524 (549)
Q Consensus       472 ------------------------~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~I  524 (549)
                                              .....++|||||+|+|.+.+.....  ....+++..++.++.|+   |.|||+++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  162 (383)
T 3eb0_A           85 DHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIR--SGRSIPMNLISIYIYQLFRAVGFIHSLGI  162 (383)
T ss_dssp             -------------------------CCEEEEEECCCSEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence                                    3445899999999998888765321  24568999999999999   889999999


Q ss_pred             EEeecc----ccc-cCCCCchhhhhhhh
Q 042769          525 IIRDLS----LWK-ADGHPSPLLLSLMR  547 (549)
Q Consensus       525 IHRDLK----Ll~-~~G~p~~~l~~Lmr  547 (549)
                      +|||||    |++ .+|..++.++++++
T Consensus       163 ~H~Dikp~Nil~~~~~~~~kl~Dfg~a~  190 (383)
T 3eb0_A          163 CHRDIKPQNLLVNSKDNTLKLCDFGSAK  190 (383)
T ss_dssp             ECSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred             ccCccCHHHEEEcCCCCcEEEEECCCCc
Confidence            999999    776 57777777777664

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.62  E-value=3e-17  Score=165.11  Aligned_cols=135  Identities=23%  Similarity=0.239  Sum_probs=109.6

Q ss_pred             eeeeecccccccCCceEEEe-----eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDK--DF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~  475 (549)
                      +.|++.+.||+|+||.||.+     +..+++.||||++....    ...+.+|+..+..+ +||||+++++++...  ..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~   99 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL-YHENIVKYKGICTEDGGNG   99 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTC-CCTTBCCEEEEEEC---CC
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhC-CCCCeeeeeeEEecCCCce
Confidence            44899999999999998874     35678999999876442    24567888666555 999999999999876  66


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .++|||||. |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       100 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A          100 IKLIMEFLPSGSLKEYLPKN-----KNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             EEEEEECCTTCBHHHHHHHH-----TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             EEEEEEeCCCCcHHHHHHhc-----cccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccc
Confidence            899999997 5999999662     3468999999999999   899999999999999    88888888777776654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.62  E-value=1.6e-17  Score=165.27  Aligned_cols=138  Identities=21%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----------
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND----------  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----------  472 (549)
                      .++..|++.+.||+|+||.||.. ...+|+.||+|++... .....+|+..+..+ +||||+++++++..          
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B            8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN-NEKAEREVKALAKL-DHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC-SGGGHHHHHHHHHC-CCTTBCCEEEEEEEEEEC------
T ss_pred             hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc-cHHHHHHHHHHHhC-CCCCEEEEeeeEeccccCcccccc
Confidence            45556999999999999998884 5567999999987643 34677899766555 99999999998754          


Q ss_pred             ------cceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          473 ------KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       473 ------~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                            ....|+|||||+| +|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~  161 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRR----GEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQV  161 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGG----GSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEE
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCE
Confidence                  4568999999985 9999998632    3568889999999999   889999999999999    78888888


Q ss_pred             chhhhhhhh
Q 042769          539 SPLLLSLMR  547 (549)
Q Consensus       539 ~~~l~~Lmr  547 (549)
                      ++..+.+++
T Consensus       162 kl~Dfg~~~  170 (284)
T 2a19_B          162 KIGDFGLVT  170 (284)
T ss_dssp             EECCCTTCE
T ss_pred             EECcchhhe
Confidence            777776654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.62  E-value=3.3e-17  Score=177.87  Aligned_cols=136  Identities=21%  Similarity=0.268  Sum_probs=107.4

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .+.+.|++.+.||+|+||+||++ +..+++.||+|++.+.     ....+.+|+..+ +.++||||+++++++......|
T Consensus        34 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l-~~l~hpniv~~~~~~~~~~~~~  112 (494)
T 3lij_A           34 HLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVL-KLLDHPNIMKLYDFFEDKRNYY  112 (494)
T ss_dssp             CHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHH-TTCCCTTBCCEEEEEECSSEEE
T ss_pred             chhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHH-HhCCCCCCCeEEEEEEeCCEEE
Confidence            45556999999999999998884 6678999999977532     234567888665 4459999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~~Lm  546 (549)
                      +|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.++.   .++..++++
T Consensus       113 lv~e~~~~g~L~~~~~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a  186 (494)
T 3lij_A          113 LVMECYKGGELFDEIIH------RMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLS  186 (494)
T ss_dssp             EEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEecCCCCcHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence            9999997 599999877      4568999999999999   889999999999999    6665443   555555554

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.62  E-value=3.9e-17  Score=164.56  Aligned_cols=135  Identities=22%  Similarity=0.282  Sum_probs=108.6

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-------hhhhHHHHHHHHhcCCCCCeeEEeeec--cCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-------HDVAFKEIQNLIASDQHPNIVRWYGVE--NDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-------~~~~~~Ei~~L~~~l~HpNIVrl~g~~--~~~~~~y  477 (549)
                      .|.+.+.||+|+||.||.. ...+++.||+|++....       ...+.+|+..+..+ +||||+++++++  ......|
T Consensus         6 ~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~~   84 (305)
T 2wtk_C            6 KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL-RHKNVIQLVDVLYNEEKQKMY   84 (305)
T ss_dssp             CBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTC-CCTTBCCEEEEEECC---CEE
T ss_pred             ceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhc-CCCCeeEEEEEEEcCCCCeEE
Confidence            3999999999999998874 56778999999765431       23567888666554 999999999998  4456799


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||.++|.+++....    ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        85 lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~  157 (305)
T 2wtk_C           85 MVMEYCVCGMQEMLDSVP----EKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAE  157 (305)
T ss_dssp             EEEECCSEEHHHHHHHST----TCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             EEehhccCCHHHHHHhCc----ccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeecccccc
Confidence            999999988888887633    4568899999999999   889999999999999    78888888777776654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.62  E-value=3.5e-17  Score=163.20  Aligned_cols=135  Identities=21%  Similarity=0.197  Sum_probs=109.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +.+.|++.+.||+|+||.||.+ ...+|+.||+|++...     ..+.+.+|+..+..+ +||||+++++++......|+
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~   82 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKL-QHPNIVRLHDSIQEESFHYL   82 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHc-CCCCcCeEEEEEEcCCEEEE
Confidence            3455999999999999998884 5677999999976532     234566888666555 99999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~~Lm  546 (549)
                      |||||. |+|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.++.   .++..++++
T Consensus        83 v~e~~~~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~  155 (284)
T 3kk8_A           83 VFDLVTGGELFEDIVA------REFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLA  155 (284)
T ss_dssp             EECCCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EEecCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceee
Confidence            999997 599998877      4568999999999999   889999999999999    7776665   444444443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.62  E-value=5.1e-17  Score=171.45  Aligned_cols=136  Identities=17%  Similarity=0.119  Sum_probs=110.7

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .+.|++.+.||+|+||.||.+ ...+|+.||+|++...   ....+.+|+..|.. ++||||+++++++.+....|+|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQ-LHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT-CCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHh-CCCcCCCeEEEEEEeCCEEEEEEE
Confidence            344999999999999998884 6678999999976532   23356789866654 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc--CCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA--DGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~--~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.+++..     ....+++..++.++.|+   |+|||+++|+|||||    |++.  +|..++.++++++
T Consensus       129 ~~~gg~L~~~l~~-----~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~  199 (387)
T 1kob_A          129 FLSGGELFDRIAA-----EDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLAT  199 (387)
T ss_dssp             CCCCCBHHHHTTC-----TTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred             cCCCCcHHHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccce
Confidence            997 599999875     13468999999999999   899999999999999    6664  4556666666654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.62  E-value=9.2e-18  Score=175.60  Aligned_cols=143  Identities=9%  Similarity=0.035  Sum_probs=108.2

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHH--HhcCCCCCeeEEe-------ee
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNL--IASDQHPNIVRWY-------GV  469 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L--~~~l~HpNIVrl~-------g~  469 (549)
                      .+.|++.+.||+|+||.||.+ ...+|+.||||++...      ..+.+.+|+..+  ++.++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            455999999999999998884 5678999999987521      234567888432  2344899999998       44


Q ss_pred             ccCcc-----------------eEEEEecccccchhhhhhhcccCCc-ccccCchhhhHHhhhe---eecccceeEEEee
Q 042769          470 ENDKD-----------------FVYLSLERCTCSLDDLIQTYSDSSC-NSVFGEDQATRAMIEY---KLRLDSVKVIIRD  528 (549)
Q Consensus       470 ~~~~~-----------------~~yLVmE~~~GsL~~~L~~~~~~~~-~~~l~~~~~~~i~~qi---L~yLH~~~IIHRD  528 (549)
                      +...+                 ..||+||||+|+|.+++........ ...+++..++.++.|+   |+|||+++|+|||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence            44432                 3889999999999999987321111 1223347777899999   8999999999999


Q ss_pred             cc----ccccCCCCchhhhhhhhc
Q 042769          529 LS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       529 LK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||    |++.+|.+++.++++++.
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~  255 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVR  255 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEE
T ss_pred             CCHHHEEEcCCCCEEEEechhhee
Confidence            99    899999999988888763

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.62  E-value=2.1e-17  Score=177.52  Aligned_cols=136  Identities=20%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|.+.+.||+|+||.||.....+++.||||++...  ..+.+.+|+..|.. ++|||||++++++. .+..|||||||.
T Consensus       188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~l~~~~~-~~~~~lv~e~~~  265 (454)
T 1qcf_A          188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKT-LQHDKLVKLHAVVT-KEPIYIITEFMA  265 (454)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTT-CCCTTBCCEEEEEC-SSSCEEEECCCT
T ss_pred             HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhh-CCCCCEeeEEEEEe-CCccEEEEeecC
Confidence            348999999999999988765556788999988753  23457789966555 59999999999987 567899999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                       |+|.++++...    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.++.+++.
T Consensus       266 ~g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  333 (454)
T 1qcf_A          266 KGSLLDFLKSDE----GSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARV  333 (454)
T ss_dssp             TCBHHHHHHSHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGG
T ss_pred             CCcHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceE
Confidence             69999998622    2357888899999999   899999999999999    899999999998888764

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.62  E-value=2.1e-17  Score=164.65  Aligned_cols=135  Identities=21%  Similarity=0.211  Sum_probs=109.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +.+.|++.+.||+|+||.||.+ ...+|+.||+|++...         ..+.+.+|+..+..+ +||||+++++++....
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~   81 (283)
T 3bhy_A            3 VEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI-RHPNIITLHDIFENKT   81 (283)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECSS
T ss_pred             hhhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhC-CCCCeeehhheecCCC
Confidence            3445999999999999998884 5567999999977532         123467888666555 9999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC----CCchhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG----HPSPLL  542 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G----~p~~~l  542 (549)
                      ..++||||+. ++|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|    ..++..
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~d  155 (283)
T 3bhy_A           82 DVVLILELVSGGELFDFLAE------KESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLID  155 (283)
T ss_dssp             EEEEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECC
T ss_pred             eEEEEEeecCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEe
Confidence            9999999997 699999976      4568999999999999   899999999999999    677766    444444


Q ss_pred             hhhh
Q 042769          543 LSLM  546 (549)
Q Consensus       543 ~~Lm  546 (549)
                      +.++
T Consensus       156 fg~~  159 (283)
T 3bhy_A          156 FGIA  159 (283)
T ss_dssp             CTTC
T ss_pred             cccc
Confidence            4444

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.62  E-value=2.6e-17  Score=167.13  Aligned_cols=137  Identities=15%  Similarity=0.185  Sum_probs=111.8

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +..+++ |++.+.||+|+||.||.. ...+++.||+|++...      ..+.+.+|+..+.. ++||||+++++++...+
T Consensus        30 ~~~~~~-y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-l~hp~iv~~~~~~~~~~  107 (309)
T 2h34_A           30 GTQFGP-YRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGR-LQEPHVVPIHDFGEIDG  107 (309)
T ss_dssp             ----CC-EEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETT
T ss_pred             CcEecc-EEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhh-cCCCCeeEEEEEEeeCC
Confidence            334555 999999999999998884 5668999999987643      12456678866554 49999999999999999


Q ss_pred             eEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|++|||++| +|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+.
T Consensus       108 ~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~  181 (309)
T 2h34_A          108 QLYVDMRLINGVDLAAMLRR------QGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIA  181 (309)
T ss_dssp             EEEEEEECCCCEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC-
T ss_pred             eEEEEEEecCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccC
Confidence            99999999985 99999987      4568999999999999   889999999999999    7888888777766654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.62  E-value=2.2e-17  Score=169.15  Aligned_cols=140  Identities=20%  Similarity=0.149  Sum_probs=112.4

Q ss_pred             eeeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|++.+.||+|+||.||.+ ..     .+++.||||++...    ....+.+|+..+..+ +||||+++++++...+..
T Consensus        47 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~  125 (343)
T 1luf_A           47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVKLLGVCAVGKPM  125 (343)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSC
T ss_pred             HHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEccCCce
Confidence            34899999999999998874 32     34588999987643    234567888666555 999999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCC------------------cccccCchhhhHHhhhe---eecccceeEEEeecc----
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSS------------------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----  530 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~------------------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----  530 (549)
                      |+|||||. |+|.+++.......                  ....+++..++.++.|+   |.|||+++|+|||||    
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NI  205 (343)
T 1luf_A          126 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNC  205 (343)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceE
Confidence            99999998 59999998742110                  11568889999999999   899999999999999    


Q ss_pred             ccccCCCCchhhhhhhh
Q 042769          531 LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       531 Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++.+|.+++..+.+++
T Consensus       206 l~~~~~~~kl~Dfg~~~  222 (343)
T 1luf_A          206 LVGENMVVKIADFGLSR  222 (343)
T ss_dssp             EECGGGCEEECCCSCHH
T ss_pred             EECCCCeEEEeecCCCc
Confidence            88999988887776654

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.62  E-value=2.9e-17  Score=164.15  Aligned_cols=125  Identities=18%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             eeeeecccccccCCceEEEe-eeecC-------chhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEG-------RPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g-------~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      +.|.+.+.||+|+||.||.. ...++       +.||+|++...   ..+.+.+|+..+..+ +||||+++++++...+.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL-SHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTS-CCTTBCCEEEEECCTTC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEEeCCC
Confidence            34999999999999998884 44444       46999977543   234567888665554 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      .++|||||. |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~  151 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKN-----KNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREED  151 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHT-----GGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCB
T ss_pred             CEEEEECCCCCCHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCc
Confidence            999999998 6999999872     2348899999999999   899999999999999    7888876

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.62  E-value=3.5e-17  Score=170.80  Aligned_cols=135  Identities=17%  Similarity=0.206  Sum_probs=115.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      +.|.+.+.||+|+||.||.+ ...+|+.||||++...           ..+.+.+|+..+..+.+||||+++++++....
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  173 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSS  173 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBSS
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeCC
Confidence            44999999999999998885 4567999999965421           13356688877777668999999999999999


Q ss_pred             eEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..|+|||||.| +|.+++..      ...+++..+..++.|+   |.|||+.+|+|||||    |++.+|.....+++++
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~------~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~  247 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTE------KVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFS  247 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEEeCCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcc
Confidence            99999999985 99999986      4568999999999999   889999999999999    8899999888888876


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       248 ~  248 (365)
T 2y7j_A          248 C  248 (365)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.62  E-value=4e-17  Score=161.84  Aligned_cols=132  Identities=23%  Similarity=0.268  Sum_probs=111.2

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.+ ...+++.||||++...    ..+.+.+|+..+.. ++||||+++++++...+..|+||||+
T Consensus         9 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (276)
T 2yex_A            9 WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLFLEYC   87 (276)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             eEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHh-cCCCCceeeeeEEEcCCEEEEEEEec
Confidence            999999999999998884 5567999999977533    22456678865544 59999999999999999999999999


Q ss_pred             cc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .| +|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        88 ~~~~L~~~l~~------~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  153 (276)
T 2yex_A           88 SGGELFDRIEP------DIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLAT  153 (276)
T ss_dssp             TTEEGGGGSBT------TTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCcHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCcc
Confidence            84 99999876      4568999999999999   889999999999999    78888888777766553

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.62  E-value=2.3e-17  Score=166.69  Aligned_cols=143  Identities=21%  Similarity=0.155  Sum_probs=114.7

Q ss_pred             eeeeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .+.|.+.+.||+|+||.||.+.      ..+++.||||++...    ..+.+.+|+..+..+.+||||+++++++...+.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~  101 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence            3459999999999999988742      245789999987642    234567898777666599999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccC------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDS------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      .++|||||. |+|.+++......            .....+++..++.++.|+   |.|||+++|+|||||    |++.+
T Consensus       102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~  181 (313)
T 1t46_A          102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHG  181 (313)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT
T ss_pred             cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCC
Confidence            999999997 5999999874310            012248899999999999   899999999999999    78888


Q ss_pred             CCCchhhhhhhhc
Q 042769          536 GHPSPLLLSLMRL  548 (549)
Q Consensus       536 G~p~~~l~~Lmrd  548 (549)
                      |.+++..+.+++.
T Consensus       182 ~~~kl~Dfg~~~~  194 (313)
T 1t46_A          182 RITKICDFGLARD  194 (313)
T ss_dssp             TEEEECCCGGGSC
T ss_pred             CCEEEcccccccc
Confidence            8888877777653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.62  E-value=4.6e-17  Score=165.08  Aligned_cols=139  Identities=23%  Similarity=0.246  Sum_probs=110.7

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHH---HHHhhhhHHHHHHHHhcCCCCCeeEEeeecc----CcceEE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLV---RALHDVAFKEIQNLIASDQHPNIVRWYGVEN----DKDFVY  477 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~---~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~----~~~~~y  477 (549)
                      ++.|++.+.||+|+||.||.. +..+|+.||||++.   ....+.+.+|+..+.. ++||||+++++++.    .....|
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRL-FNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHT-CCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhh-cCCCCeeeEEEEEEeccCCCceeE
Confidence            355999999999999998884 66789999999763   2234467788866654 49999999999986    455789


Q ss_pred             EEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||.| +|.+++.....  ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       107 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~  182 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKD--KGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMN  182 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCE
T ss_pred             EEEEeCCCCcHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcch
Confidence            99999984 99999986431  23568999999999999   899999999999999    78889888777766543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.62  E-value=2.5e-17  Score=169.04  Aligned_cols=143  Identities=22%  Similarity=0.284  Sum_probs=109.6

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      .+.+.|++.+.||+|+||.||.+ ...+++.||+|++...        ..+.+.+|+..+..+ +||||+++++++.+.+
T Consensus        23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~  101 (345)
T 3hko_A           23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL-HHPNIARLYEVYEDEQ  101 (345)
T ss_dssp             HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHC-CCTTBCCEEEEEECSS
T ss_pred             hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhC-CCCCcceeehhhccCC
Confidence            44556999999999999998874 5677899999966543        224567888666555 9999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCC----------------------------------cccccCchhhhHHhhhe---e
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSS----------------------------------CNSVFGEDQATRAMIEY---K  516 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~----------------------------------~~~~l~~~~~~~i~~qi---L  516 (549)
                      ..|+|||||+ |+|.+++.......                                  ....+++..++.++.|+   |
T Consensus       102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l  181 (345)
T 3hko_A          102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL  181 (345)
T ss_dssp             EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence            9999999997 59999986321100                                  01234667788888888   8


Q ss_pred             ecccceeEEEeecc----ccccCC--CCchhhhhhhh
Q 042769          517 LRLDSVKVIIRDLS----LWKADG--HPSPLLLSLMR  547 (549)
Q Consensus       517 ~yLH~~~IIHRDLK----Ll~~~G--~p~~~l~~Lmr  547 (549)
                      +|||+++|+|||||    |++.++  .+++..+.+++
T Consensus       182 ~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~  218 (345)
T 3hko_A          182 HYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSK  218 (345)
T ss_dssp             HHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCE
T ss_pred             HHHHHCCccccCCChhhEEEecCCCceEEEeeccccc
Confidence            99999999999999    777777  55555555543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.62  E-value=3.4e-17  Score=171.66  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=101.8

Q ss_pred             cccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          412 NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      .+.||+|+||.||.+ ...+|+.||+|++..   ...+.+.+|+..|..+ +||||+++++++...+..|||||||+ |+
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~lv~E~~~~~~  172 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQL-DHANLIQLYDAFESKNDIVLVMEYVDGGE  172 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTC-CCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhC-CCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence            678999999999884 567899999997763   2344677899666554 99999999999999999999999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc--ccCCCCchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW--KADGHPSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll--~~~G~p~~~l~~Lmr  547 (549)
                      |.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |+  +.++..++.++++++
T Consensus       173 L~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~  237 (373)
T 2x4f_A          173 LFDRIIDE-----SYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLAR  237 (373)
T ss_dssp             EHHHHHHT-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCE
T ss_pred             HHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCce
Confidence            99988762     3468899999999999   899999999999999    55  455667776666654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.62  E-value=2.8e-17  Score=167.55  Aligned_cols=140  Identities=19%  Similarity=0.174  Sum_probs=113.9

Q ss_pred             ceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      ..+.|.+.+.||+|+||.||.+...+|+.||||++....    ...+.+|+..+ +.++||||+++++++......++||
T Consensus        28 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l-~~l~h~~iv~~~~~~~~~~~~~lv~  106 (326)
T 3uim_A           28 ASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLLRLRGFCMTPTERLLVY  106 (326)
T ss_dssp             TTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGG-GTCCCTTBCCCCEEECCSSCCEEEE
T ss_pred             HhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHH-HhccCCCccceEEEEecCCceEEEE
Confidence            344599999999999999888665679999999876432    22467888655 4459999999999999999999999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce---eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV---KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~---~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++....  .....+++..+..++.|+   |+|||++   +|+|||||    |++.+|.+++..+.+++
T Consensus       107 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~  182 (326)
T 3uim_A          107 PYMANGSVASCLRERP--ESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAK  182 (326)
T ss_dssp             ECCTTCBHHHHHHCCS--TTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCE
T ss_pred             EeccCCCHHHHHHhcc--ccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCcccc
Confidence            9997 59999998733  123358888999999998   8999999   99999999    88999888877777654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.62  E-value=7.9e-17  Score=165.28  Aligned_cols=142  Identities=20%  Similarity=0.195  Sum_probs=112.2

Q ss_pred             eeeeeecccccccCCceEEEeee--------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGI--------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~--------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.|.+.+.||+|+||.||.+..        .+++.||||++...    ....+.+|+..+..+.+||||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            34499999999999999887422        35678999987642    2345678887776666999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD  535 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~  535 (549)
                      +..|+|||||. |+|.+++.......          ....+++..++.++.|+   |.|||+++|+|||||    |++.+
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~  193 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTEN  193 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTT
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCC
Confidence            99999999997 59999998743110          11347888899999999   899999999999999    88899


Q ss_pred             CCCchhhhhhhh
Q 042769          536 GHPSPLLLSLMR  547 (549)
Q Consensus       536 G~p~~~l~~Lmr  547 (549)
                      |.+++..+.+++
T Consensus       194 ~~~kL~Dfg~~~  205 (334)
T 2pvf_A          194 NVMKIADFGLAR  205 (334)
T ss_dssp             CCEEECCCTTCE
T ss_pred             CCEEEccccccc
Confidence            988888777665

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.62  E-value=2.5e-17  Score=165.17  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=111.0

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .+.+.|.+.+.||+|+||.||++ ...+++.+|+|++....    .+.+.+|+..+..+ +||||+++++++......|+
T Consensus        19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~~~~~~l   97 (285)
T 3is5_A           19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL-DHPNIIKIFEVFEDYHNMYI   97 (285)
T ss_dssp             CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEE
T ss_pred             ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhC-CCchHHhHHHheecCCeEEE
Confidence            34555999999999999998884 66778999999876542    23567888666555 99999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLM  546 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lm  546 (549)
                      |||||+ |+|.+++.....  ....+++..++.++.|+   |+|||+++|+|||||    |+   +.++..++..+.++
T Consensus        98 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a  174 (285)
T 3is5_A           98 VMETCEGGELLERIVSAQA--RGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLA  174 (285)
T ss_dssp             EECCCSCCBHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCC
T ss_pred             EEEeCCCCcHHHHHHhhhh--cccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecc
Confidence            999998 599999865321  13568999999999999   889999999999999    56   33455555555544

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.61  E-value=4.2e-17  Score=168.94  Aligned_cols=137  Identities=21%  Similarity=0.245  Sum_probs=113.9

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      ...+.|++.+.||+|+||.||.. ...+++.||+|++..    .....+.+|+..+..+ +||||+++++++...+..|+
T Consensus        30 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~l  108 (360)
T 3eqc_A           30 LKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC-NSPYIVGFYGAFYSDGEISI  108 (360)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC-CCTTBCCEEEEEEETTEEEE
T ss_pred             cccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHC-CCCCEEEEeEEEEECCEEEE
Confidence            33455999999999999998884 566799999997653    2344677888666554 99999999999999999999


Q ss_pred             Eeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||.| +|.+++..      ...+++..+..++.|+   |.|||++ +|+|||||    |++.+|++++..+.+++
T Consensus       109 v~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  180 (360)
T 3eqc_A          109 CMEHMDGGSLDQVLKK------AGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  180 (360)
T ss_dssp             EECCCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             EEECCCCCCHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCc
Confidence            9999975 99999987      4568899999999998   8899986 99999999    88899988777666543

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.61  E-value=4.1e-17  Score=166.55  Aligned_cols=136  Identities=22%  Similarity=0.252  Sum_probs=110.0

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHh-cCCCCCeeEEeeeccCc----ceEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIA-SDQHPNIVRWYGVENDK----DFVYL  478 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~-~l~HpNIVrl~g~~~~~----~~~yL  478 (549)
                      .+.+.|++.+.||+|+||.||.+ ..+++.||||++.........+|.+.+.. .++||||+++++++...    ...|+
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMG-KWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEE-EETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             ccccceEEEeEeecCCCeEEEEE-EECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            34455999999999999997764 45699999998765444444455544333 34999999999998876    68999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce--------eEEEeecc----ccccCCCCchhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV--------KVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~--------~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                      |||||. |+|.++++.       ..+++..++.++.|+   |.|||++        +|+|||||    |++.+|.+++.+
T Consensus       113 v~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D  185 (337)
T 3mdy_A          113 ITDYHENGSLYDYLKS-------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD  185 (337)
T ss_dssp             EECCCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred             EEeccCCCcHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence            999997 599999976       358899999999999   8999988        99999999    889999988888


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +.+++
T Consensus       186 fg~a~  190 (337)
T 3mdy_A          186 LGLAV  190 (337)
T ss_dssp             CTTCE
T ss_pred             CCCce
Confidence            77764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.61  E-value=5e-17  Score=174.52  Aligned_cols=135  Identities=25%  Similarity=0.304  Sum_probs=111.8

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-eEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-FVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||. +...|+.||||+++.. ..+.+.+|+..|..+ +||||+++++++.... ..|||||||. 
T Consensus       194 ~~~~~~~lG~G~fg~V~~-~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~~iv~e~~~~  271 (450)
T 1k9a_A          194 ELKLLQTIGKGEFGDVML-GDYRGNKVAVKCIKNDATAQAFLAEASVMTQL-RHSNLVQLLGVIVEEKGGLYIVTEYMAK  271 (450)
T ss_dssp             GEEEEEEEEECSSEEEEE-EEETTEEEEEEEESSCTTSHHHHHHHHHHHTC-CCTTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred             HeEEEeeecCcCCeeEEE-EEecCCeEEEEEeCCchHHHHHHHHHHHHHhc-cCCCEEEEEEEEEcCCCceEEEEEecCC
Confidence            389999999999999776 4456889999988643 234567899666555 9999999999976655 7999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+|.++++...    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++.++++
T Consensus       272 g~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          272 GSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  338 (450)
T ss_dssp             CBHHHHHHHHC----TTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CcHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccc
Confidence            59999998732    2347888999999999   899999999999999    889999999888888764

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.61  E-value=3.9e-17  Score=165.02  Aligned_cols=138  Identities=23%  Similarity=0.290  Sum_probs=105.1

Q ss_pred             CccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeecc------
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVEN------  471 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~------  471 (549)
                      +..+++.|.+.+.||+|+||.||.+ ...+|+.||||++..   ...+.+.+|+..+..+ +||||+++++++.      
T Consensus         6 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~   84 (320)
T 2i6l_A            6 GFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL-DHDNIVKVFEILGPSGSQL   84 (320)
T ss_dssp             CEEETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECTTSCBC
T ss_pred             cCccCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhc-CCCCeeEEEEecccccccc
Confidence            3445566999999999999998884 566799999997642   2344567898666555 9999999998873      


Q ss_pred             --------CcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc-cC
Q 042769          472 --------DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK-AD  535 (549)
Q Consensus       472 --------~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~-~~  535 (549)
                              .....|+||||+.|+|.+++..       +.+++..++.++.|+   |+|||+++|+|||||    |++ .+
T Consensus        85 ~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  157 (320)
T 2i6l_A           85 TDDVGSLTELNSVYIVQEYMETDLANVLEQ-------GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTED  157 (320)
T ss_dssp             CC----CCSCSEEEEEEECCSEEHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT
T ss_pred             ccccccccccCceeEEeeccCCCHHHHhhc-------CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC
Confidence                    4467899999999999999865       458889999999999   899999999999999    665 45


Q ss_pred             CCCchhhhhhhh
Q 042769          536 GHPSPLLLSLMR  547 (549)
Q Consensus       536 G~p~~~l~~Lmr  547 (549)
                      +.+++..+.+++
T Consensus       158 ~~~kl~Dfg~~~  169 (320)
T 2i6l_A          158 LVLKIGDFGLAR  169 (320)
T ss_dssp             TEEEECCCTTCB
T ss_pred             CeEEEccCcccc
Confidence            566666666554

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.61  E-value=5.4e-17  Score=164.26  Aligned_cols=140  Identities=22%  Similarity=0.340  Sum_probs=110.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+++ |++.+.||+|+||.||.. ...+|+.||||++..      .....+.+|+..+..+ +||||+++++++...+..
T Consensus        30 ~~~~-y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~  107 (310)
T 2wqm_A           30 TLAN-FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL-NHPNVIKYYASFIEDNEL  107 (310)
T ss_dssp             SGGG-EEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEE
T ss_pred             cccc-eEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEEcCCcE
Confidence            4444 999999999999998884 567899999997653      2334567888666555 999999999999999999


Q ss_pred             EEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++||||+.| +|.+++.....  ....+++..++.++.|+   |.|||+++++|||||    |++.+|..++..+++++
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~  184 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKK--QKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGR  184 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC----
T ss_pred             EEEEecCCCCCHHHHHHHhcc--cccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEecccee
Confidence            999999985 99999875321  13458889999999999   899999999999999    78889988877776654

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.61  E-value=3.8e-17  Score=161.21  Aligned_cols=134  Identities=22%  Similarity=0.254  Sum_probs=112.6

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||.+...+++.||+|++...  ..+.+.+|+..+..+ +||||+++++++...+..|++|||++ 
T Consensus         9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~~~~   87 (267)
T 3t9t_A            9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVTEFMEH   87 (267)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred             heeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence            38999999999999988865557788999987753  234567888666555 99999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.+|..++..+.+++
T Consensus        88 ~~L~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~  152 (267)
T 3t9t_A           88 GCLSDYLRTQ-----RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTR  152 (267)
T ss_dssp             CBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGG
T ss_pred             CcHHHHHhhC-----cccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccccc
Confidence            5999999762     2458889999999999   899999999999999    78888888877776654

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.61  E-value=6.3e-17  Score=165.66  Aligned_cols=135  Identities=22%  Similarity=0.247  Sum_probs=112.6

Q ss_pred             ceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhc-CCCCCeeEEeeeccCcc----eEEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIAS-DQHPNIVRWYGVENDKD----FVYLS  479 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~-l~HpNIVrl~g~~~~~~----~~yLV  479 (549)
                      +.+.|.+.+.||+|+||.||.. ..+|+.||||++.........+|.+.+... ++||||+++++++....    ..|+|
T Consensus        40 ~~~~y~~~~~lg~G~~g~Vy~~-~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv  118 (342)
T 1b6c_B           40 IARTIVLQESIGKGRFGEVWRG-KWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV  118 (342)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEE-EETTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEE
T ss_pred             ccccEEEEeeecCCCCcEEEEE-EEcCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEE
Confidence            4456999999999999997764 347999999988765555667787666553 69999999999998776    79999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc--------ceeEEEeecc----ccccCCCCchhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD--------SVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH--------~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      ||||. |+|.+++..       ..+++..++.++.|+   |.|||        +++|+|||||    |++.+|.+++..+
T Consensus       119 ~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Df  191 (342)
T 1b6c_B          119 SDYHEHGSLFDYLNR-------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL  191 (342)
T ss_dssp             ECCCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCC
T ss_pred             EeecCCCcHHHHHhc-------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEEC
Confidence            99998 599999976       358889999999999   88999        8999999999    8899998888777


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .+++
T Consensus       192 g~~~  195 (342)
T 1b6c_B          192 GLAV  195 (342)
T ss_dssp             TTCE
T ss_pred             CCce
Confidence            7653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.61  E-value=4.7e-17  Score=165.65  Aligned_cols=142  Identities=20%  Similarity=0.150  Sum_probs=103.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCc---hhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGR---PVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~---~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      ..+.|++.+.||+|+||.||.+ ...+++   .||||++...     ..+.+.+|+..+..+ +||||+++++++.....
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF-DHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTC-CCTTBCCCCEEEECC--
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHC-CCCceehhhceeecccc
Confidence            3455999999999999998874 344443   7999977643     234567888666555 99999999999987765


Q ss_pred             E------EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          476 V------YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       476 ~------yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      .      +++||||. |+|.+++...........+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++.
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~  179 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVA  179 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEEC
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEe
Confidence            5      99999998 5999999764322222358899999999999   889999999999999    88999988887


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      ++++++
T Consensus       180 Dfg~a~  185 (323)
T 3qup_A          180 DFGLSR  185 (323)
T ss_dssp             CCCC--
T ss_pred             eccccc
Confidence            777654

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.61  E-value=5.2e-17  Score=169.60  Aligned_cols=132  Identities=26%  Similarity=0.325  Sum_probs=109.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc------
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD------  474 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~------  474 (549)
                      +.|++.+.||+|+||.||.+ +..+++.||||++..     .....+.+|+..+.. ++||||+++++++....      
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHh-cCCCCccceEEeecccccccccc
Confidence            44999999999999998884 667899999997753     223456788866555 49999999999987665      


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ..|+|||||.|+|.+++..        .+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus       104 ~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  175 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  175 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred             ceEEEEEcCCCCHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence            7899999999999988854        47888999999999   889999999999999    88999988887777654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.61  E-value=3e-17  Score=165.81  Aligned_cols=137  Identities=21%  Similarity=0.252  Sum_probs=111.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      .+.+.|.+.+.||+|+||.||.+ +..+|+.||+|++...   ....+.+|+..+..+ +||||+++++++......|+|
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   84 (304)
T 2jam_A            6 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI-KHENIVTLEDIYESTTHYYLV   84 (304)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHC-CCTTBCCEEEEEECSSEEEEE
T ss_pred             chhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhC-CCCCeeehhhhcccCCEEEEE
Confidence            34556999999999999998884 6678999999977532   233566888666555 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      ||||. |+|.+++..      .+.+++..+..++.|+   |.|||+++|+|||||    |+   +.++.+++..+.+.+
T Consensus        85 ~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~  157 (304)
T 2jam_A           85 MQLVSGGELFDRILE------RGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK  157 (304)
T ss_dssp             ECCCCSCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTC
T ss_pred             EEcCCCccHHHHHHH------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcce
Confidence            99997 599999977      4568999999999999   889999999999999    55   566666666655543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.61  E-value=4.1e-17  Score=167.19  Aligned_cols=140  Identities=18%  Similarity=0.208  Sum_probs=114.5

Q ss_pred             cceeeeeec-ccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          404 NVGKLFVSN-TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       404 ~igk~y~~~-~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      .+.+.|.+. +.||+|+||.||.+ ...+++.||+|++...     ....+.+|+..+..+..||||+++++++...+..
T Consensus        25 ~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~  104 (327)
T 3lm5_A           25 NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEI  104 (327)
T ss_dssp             HHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEE
T ss_pred             hhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeE
Confidence            344557775 89999999998884 6677999999987642     1235678887777776789999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~L  545 (549)
                      |+|||||. |+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.   +|..++..+.+
T Consensus       105 ~lv~e~~~~~~L~~~~~~~~----~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~  180 (327)
T 3lm5_A          105 ILILEYAAGGEIFSLCLPEL----AEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGM  180 (327)
T ss_dssp             EEEEECCTTEEGGGGGSSCC-----CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGG
T ss_pred             EEEEEecCCCcHHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCcc
Confidence            99999998 59999986521    3568999999999999   899999999999999    6666   78888877777


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       181 a~  182 (327)
T 3lm5_A          181 SR  182 (327)
T ss_dssp             CE
T ss_pred             cc
Confidence            65

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.61  E-value=8.2e-17  Score=161.35  Aligned_cols=137  Identities=26%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----c
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND----K  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~  473 (549)
                      .-++.|.+.+.||+|+||.||.. ...++..||+|++..     ...+.+.+|+..+.. ++||||+++++++..    .
T Consensus        23 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~  101 (290)
T 1t4h_A           23 NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG-LQHPNIVRFYDSWESTVKGK  101 (290)
T ss_dssp             TTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEEESSSC
T ss_pred             cCceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHh-CCCCCeeeeeeeeccccCCC
Confidence            34566899999999999998884 567788999986643     233456788866554 499999999998764    4


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccc-cCCCCchhh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWK-ADGHPSPLL  542 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~-~~G~p~~~l  542 (549)
                      ..+|+|||||+ |+|.+++..      ...+++..++.++.|+   |.|||+++  |+|||||    |++ .+|.+++..
T Consensus       102 ~~~~lv~e~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~D  175 (290)
T 1t4h_A          102 KCIVLVTELMTSGTLKTYLKR------FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGD  175 (290)
T ss_dssp             EEEEEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECC
T ss_pred             ceEEEEEEecCCCCHHHHHHH------ccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEee
Confidence            67999999997 599999987      4568899999999999   89999999  9999999    675 788887777


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +.+++
T Consensus       176 fg~~~  180 (290)
T 1t4h_A          176 LGLAT  180 (290)
T ss_dssp             TTGGG
T ss_pred             CCCcc
Confidence            76653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.61  E-value=6.3e-17  Score=168.30  Aligned_cols=135  Identities=10%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             eeeeecccccccCCceEEEe-eee-----cCchhHHHHHHHHH--------------hhhhHHHHHHHHhcCCCCCeeEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIY-----EGRPVAVKRLVRAL--------------HDVAFKEIQNLIASDQHPNIVRW  466 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~-----~g~~VAVK~i~~~~--------------~~~~~~Ei~~L~~~l~HpNIVrl  466 (549)
                      +.|++.+.||+|+||.||++ ...     .++.||||++....              ......|+.. ...++||||+++
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~-~~~l~h~~iv~~  113 (364)
T 3op5_A           35 AAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIR-TRKLKYLGVPKY  113 (364)
T ss_dssp             CEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHH-HTTCSCCCSCCE
T ss_pred             CeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHH-HhhccCCCCCeE
Confidence            45999999999999998885 222     35789998644211              1122334423 345589999999


Q ss_pred             eeeccCc----ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc--
Q 042769          467 YGVENDK----DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK--  533 (549)
Q Consensus       467 ~g~~~~~----~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~--  533 (549)
                      ++++...    ...|||||||.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++  
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~-----~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~  188 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRFGSDLQKIYEAN-----AKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYK  188 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECEEEEHHHHHHHT-----TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESS
T ss_pred             EeeeeeccCCcceEEEEEeCCCCCHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecC
Confidence            9998764    568999999977999999872     3569999999999999   899999999999999    787  


Q ss_pred             cCCCCchhhhhhhh
Q 042769          534 ADGHPSPLLLSLMR  547 (549)
Q Consensus       534 ~~G~p~~~l~~Lmr  547 (549)
                      .+|.+++.++++++
T Consensus       189 ~~~~~kl~DFG~a~  202 (364)
T 3op5_A          189 NPDQVYLVDYGLAY  202 (364)
T ss_dssp             CTTCEEECCCTTCE
T ss_pred             CCCeEEEEECCcce
Confidence            78888887777764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.60  E-value=3.8e-17  Score=170.98  Aligned_cols=137  Identities=22%  Similarity=0.299  Sum_probs=102.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK----  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~----  473 (549)
                      .+.+.|++.+.||+|+||.||.+ +..+|+.||||++...     ....+.+|+..|..+ +||||+++++++...    
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~hpnIv~~~~~~~~~~~~~  104 (367)
T 2fst_X           26 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM-KHENVIGLLDVFTPARSLE  104 (367)
T ss_dssp             EEETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSGG
T ss_pred             CCCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEecCCccc
Confidence            34455999999999999998884 6778999999987532     234567899666555 899999999998654    


Q ss_pred             --ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          474 --DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       474 --~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                        ...|++||++.++|.++++.       ..+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..++
T Consensus       105 ~~~~~~lv~e~~~~~L~~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG  177 (367)
T 2fst_X          105 EFNDVYLVTHLMGADLNNIVKC-------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFG  177 (367)
T ss_dssp             GCCCCEEEEECCCEECC------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC--
T ss_pred             cCCeEEEEecccCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecc
Confidence              56899999998899998865       458999999999999   889999999999999    88999998888888


Q ss_pred             hhhc
Q 042769          545 LMRL  548 (549)
Q Consensus       545 Lmrd  548 (549)
                      +++.
T Consensus       178 ~a~~  181 (367)
T 2fst_X          178 LARH  181 (367)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7753

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.60  E-value=2.8e-18  Score=176.25  Aligned_cols=121  Identities=19%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH-----------hhhhHHHHHHHHhcC--------CCCCeeEEee
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----------HDVAFKEIQNLIASD--------QHPNIVRWYG  468 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----------~~~~~~Ei~~L~~~l--------~HpNIVrl~g  468 (549)
                      .|++.+.||+|+||+||++. .+|+.||||++....           .+.+.+|+..+..+.        +|||||++.+
T Consensus        21 ~y~~~~~lG~G~~g~V~~~~-~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~   99 (336)
T 2vuw_A           21 KLQRCEKIGEGVFGEVFQTI-ADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNS   99 (336)
T ss_dssp             HHHTCEEEEEETTEEEEEEE-ETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEE
T ss_pred             cchheeeecccCceEEEEEE-eCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcc
Confidence            38899999999999987743 388999999887432           145667886655542        3666666655


Q ss_pred             e-----------------ccC-------------cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe--
Q 042769          469 V-----------------END-------------KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY--  515 (549)
Q Consensus       469 ~-----------------~~~-------------~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi--  515 (549)
                      +                 +..             .+..|||||||. |++.+.+.+       ..+++..++.++.|+  
T Consensus       100 ~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~-------~~~~~~~~~~i~~qi~~  172 (336)
T 2vuw_A          100 VHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT-------KLSSLATAKSILHQLTA  172 (336)
T ss_dssp             EEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT-------TCCCHHHHHHHHHHHHH
T ss_pred             eeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh-------cCCCHHHHHHHHHHHHH
Confidence            4                 333             678999999997 566666543       358899999999999  


Q ss_pred             -eeccc-ceeEEEeecc----ccccCC
Q 042769          516 -KLRLD-SVKVIIRDLS----LWKADG  536 (549)
Q Consensus       516 -L~yLH-~~~IIHRDLK----Ll~~~G  536 (549)
                       |+||| +++|+|||||    |++.+|
T Consensus       173 aL~~lH~~~~ivHrDlKp~NILl~~~~  199 (336)
T 2vuw_A          173 SLAVAEASLRFEHRDLHWGNVLLKKTS  199 (336)
T ss_dssp             HHHHHHHHHCCBCSCCCGGGEEEEECS
T ss_pred             HHHHHHHhCCEeECCCCHHHEEEeccC
Confidence             89999 9999999999    888887

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.60  E-value=2.1e-17  Score=174.48  Aligned_cols=147  Identities=20%  Similarity=0.208  Sum_probs=108.6

Q ss_pred             cCCccceeeeee-cccccccCCceEEEee-e--ecCchhHHHHHHHHH-hhhhHHHHHHHHhcCCCCCeeEEeeec--cC
Q 042769          400 AQGRNVGKLFVS-NTEIAKGSNGTVVYEG-I--YEGRPVAVKRLVRAL-HDVAFKEIQNLIASDQHPNIVRWYGVE--ND  472 (549)
Q Consensus       400 ~~~~~igk~y~~-~~~LG~G~fG~V~~~~-~--~~g~~VAVK~i~~~~-~~~~~~Ei~~L~~~l~HpNIVrl~g~~--~~  472 (549)
                      .....+.+.|.+ +++||+|+||.||++. .  .+++.||||++.... ...+.+|+..|..+ +|||||++++++  ..
T Consensus        13 ~~~~~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~~~   91 (405)
T 3rgf_A           13 SERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLREL-KHPNVISLQKVFLSHA   91 (405)
T ss_dssp             HHCCCHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHC-CCTTBCCCCEEEEETT
T ss_pred             hhhhhhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhc-CCCCeeeEeeEEecCC
Confidence            345566777888 6689999999988853 2  468899999886432 33567899766555 999999999999  55


Q ss_pred             cceEEEEecccccchhhhhhhcccC---CcccccCchhhhHHhhhe---eecccceeEEEeecc----cc----ccCCCC
Q 042769          473 KDFVYLSLERCTCSLDDLIQTYSDS---SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW----KADGHP  538 (549)
Q Consensus       473 ~~~~yLVmE~~~GsL~~~L~~~~~~---~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll----~~~G~p  538 (549)
                      ...+|||||||.|+|.+++..+...   .....+++..++.++.|+   |.|||+++|+|||||    |+    +.+|..
T Consensus        92 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~  171 (405)
T 3rgf_A           92 DRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRV  171 (405)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCE
T ss_pred             CCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcE
Confidence            7789999999999999988753211   112248899999999999   889999999999999    67    667788


Q ss_pred             chhhhhhhh
Q 042769          539 SPLLLSLMR  547 (549)
Q Consensus       539 ~~~l~~Lmr  547 (549)
                      ++..+++++
T Consensus       172 kl~Dfg~a~  180 (405)
T 3rgf_A          172 KIADMGFAR  180 (405)
T ss_dssp             EECCTTCCC
T ss_pred             EEEECCCce
Confidence            877777664

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.60  E-value=7.2e-17  Score=165.37  Aligned_cols=136  Identities=24%  Similarity=0.278  Sum_probs=111.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .+++ |++.+.||+|+||.||.+ ...+|+.||||++...     ....+.+|+..+..+ +||||+++++++...+..|
T Consensus        23 ~~~~-y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~  100 (331)
T 4aaa_A           23 SMEK-YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL-RHENLVNLLEVCKKKKRWY  100 (331)
T ss_dssp             CGGG-EEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEE
T ss_pred             hhhh-heeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhC-CCCCEeeEEEEeecCCEEE
Confidence            3444 999999999999998884 6677999999976422     233456788666555 9999999999999999999


Q ss_pred             EEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||.| +|.+++..      ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus       101 lv~e~~~~~~l~~~~~~------~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  172 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELF------PNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFAR  172 (331)
T ss_dssp             EEEECCSEEHHHHHHHS------TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             EEEecCCcchHHHHHhh------ccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCce
Confidence            99999986 66666554      4568999999999999   889999999999999    88899988877776654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.60  E-value=7.2e-17  Score=162.35  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=111.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ...+.|++.+.||+|+||.||.+ ...+++.||+|++....   ...+.+|+..+..+ +||||+++++++...+..|+|
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv   94 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATC-DHPYIVKLLGAYYHDGKLWIM   94 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHC-CCTTBCCEEEEEECC-CEEEE
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcC-CCCCEeeeeeeeeeCCeEEEE
Confidence            34455999999999999998884 55678999999775432   34566888666554 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||||+ |+|.+++...     ...+++..++.++.|+   |.|||+++++|||||    |++.+|.+++..+.+.
T Consensus        95 ~e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  164 (302)
T 2j7t_A           95 IEFCPGGAVDAIMLEL-----DRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVS  164 (302)
T ss_dssp             EECCTTEEHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred             EEeCCCCcHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCC
Confidence            99997 4999988762     3458999999999999   899999999999999    7888888877766654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.60  E-value=5.5e-17  Score=169.15  Aligned_cols=130  Identities=15%  Similarity=0.110  Sum_probs=105.0

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcC-------CCCCeeEEeeecc-
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASD-------QHPNIVRWYGVEN-  471 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l-------~HpNIVrl~g~~~-  471 (549)
                      ..+.+.|++.++||+|+||.||++ ...+++.||||++...  ..+.+.+|+..+..+.       +|+||+++++++. 
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~  112 (397)
T 1wak_A           33 DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI  112 (397)
T ss_dssp             CEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred             hhcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence            344455999999999999998884 6678999999987632  2345678887665542       2889999999987 


Q ss_pred             ---CcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCC
Q 042769          472 ---DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADG  536 (549)
Q Consensus       472 ---~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G  536 (549)
                         .....|||||||.|+|.+++....    ...+++..++.++.|+   |+|||++ +|+|||||    |++.+|
T Consensus       113 ~~~~~~~~~lv~e~~~~~l~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~  184 (397)
T 1wak_A          113 SGVNGTHICMVFEVLGHHLLKWIIKSN----YQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNE  184 (397)
T ss_dssp             EETTEEEEEEEECCCCCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCH
T ss_pred             cCCCCceEEEEEeccCccHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccc
Confidence               667899999999988888887622    3568999999999999   8999998 99999999    777665

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.60  E-value=3.8e-17  Score=173.88  Aligned_cols=135  Identities=18%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----------hhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----------HDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      +.+.|.+.+.||+|+||.||++ ...+++.||||++.+..           ...+.+|+..|.++ +||||+++++++..
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~hpniv~l~~~~~~  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL-NHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHC-CCTTBCCCCEEEES
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhC-CCCCEeeEEEEEec
Confidence            3445999999999999999884 66789999999765421           12466899766655 99999999999865


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchh
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPL  541 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~  541 (549)
                      . ..|+|||||. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.++.   +++.
T Consensus       212 ~-~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~  284 (419)
T 3i6u_A          212 E-DYYIVLELMEGGELFDKVVG------NKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT  284 (419)
T ss_dssp             S-EEEEEEECCTTCBGGGGTSS------SCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred             C-ceEEEEEcCCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEe
Confidence            4 5789999997 599999876      5579999999999999   889999999999999    7765543   5666


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+++++
T Consensus       285 DFG~a~  290 (419)
T 3i6u_A          285 DFGHSK  290 (419)
T ss_dssp             CSSTTT
T ss_pred             ecccce
Confidence            666554

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.60  E-value=6.6e-17  Score=164.86  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=106.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----------HhhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----------LHDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      +.+.|.+.+.||+|+||.||.+ ...+++.||||++...           ....+.+|+..+..+ +||||+++++++..
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~   86 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL-NHPCIIKIKNFFDA   86 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHC-CCTTBCCEEEEEES
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhC-CCCCCceEeeEEcC
Confidence            4455999999999999998884 6677899999976422           122466888666555 99999999999876


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchh
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPL  541 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~  541 (549)
                      .. .|+|||||. |+|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.   .++.
T Consensus        87 ~~-~~lv~e~~~~~~L~~~~~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~  159 (322)
T 2ycf_A           87 ED-YYIVLELMEGGELFDKVVG------NKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKIT  159 (322)
T ss_dssp             SS-EEEEEECCTTEETHHHHST------TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEEC
T ss_pred             Cc-eEEEEecCCCCcHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEc
Confidence            65 899999997 599999876      4568999999999999   889999999999999    7776664   5555


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+++++
T Consensus       160 Dfg~~~  165 (322)
T 2ycf_A          160 DFGHSK  165 (322)
T ss_dssp             CCTTCE
T ss_pred             cCccce
Confidence            555443

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.60  E-value=7.6e-17  Score=172.12  Aligned_cols=139  Identities=22%  Similarity=0.185  Sum_probs=112.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhc-----CCCCCeeEEeeeccCcce
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIAS-----DQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~-----l~HpNIVrl~g~~~~~~~  475 (549)
                      .+..+|++.++||+|+||.||++ +..+++.||||++...  ....+.+|+..+..+     .+|+||+++++++.....
T Consensus        94 ~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  173 (429)
T 3kvw_A           94 HVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNH  173 (429)
T ss_dssp             EETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTE
T ss_pred             cccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCe
Confidence            44555999999999999999884 6677999999987532  233455666554332     378899999999999999


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC--Cchhhhhhh
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH--PSPLLLSLM  546 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~--p~~~l~~Lm  546 (549)
                      +++|||||.|+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.  .++.+++++
T Consensus       174 ~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a  249 (429)
T 3kvw_A          174 ICMTFELLSMNLYELIKKNK----FQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSS  249 (429)
T ss_dssp             EEEEECCCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             EEEEEeccCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence            99999999999999998733    3458999999999999   899999999999999    8888887  455555554

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=9.6e-17  Score=164.80  Aligned_cols=141  Identities=19%  Similarity=0.167  Sum_probs=111.9

Q ss_pred             eeeeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|.+.+.||+|+||.||.+..      .+++.||||++...    ..+.+.+|+..+..+.+||||+++++++...+..
T Consensus        45 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  124 (344)
T 1rjb_A           45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  124 (344)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCcc
Confidence            4499999999999999887432      34668999977532    2345778997776665899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccC-----------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----c
Q 042769          477 YLSLERCT-CSLDDLIQTYSDS-----------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----L  531 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~-----------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----L  531 (549)
                      |+|||||+ |+|.+++......                 .....+++..++.++.|+   |+|||+++|+|||||    |
T Consensus       125 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl  204 (344)
T 1rjb_A          125 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVL  204 (344)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEE
T ss_pred             EEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEE
Confidence            99999997 5999999873311                 001347888999999999   899999999999999    8


Q ss_pred             cccCCCCchhhhhhhh
Q 042769          532 WKADGHPSPLLLSLMR  547 (549)
Q Consensus       532 l~~~G~p~~~l~~Lmr  547 (549)
                      ++.+|.+++..+.+++
T Consensus       205 l~~~~~~kL~Dfg~~~  220 (344)
T 1rjb_A          205 VTHGKVVKICDFGLAR  220 (344)
T ss_dssp             EETTTEEEECCCGGGS
T ss_pred             EcCCCcEEeCCCccCc
Confidence            8999988888777765

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.60  E-value=3.5e-17  Score=165.52  Aligned_cols=142  Identities=21%  Similarity=0.223  Sum_probs=112.8

Q ss_pred             eeeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-e
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-F  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-~  475 (549)
                      +.|.+.+.||+|+||.||.+.      ..+++.||||++...    ....+.+|+..+..+.+||||+++++++...+ .
T Consensus        27 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~  106 (316)
T 2xir_A           27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP  106 (316)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSC
T ss_pred             hheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCc
Confidence            449999999999999988742      345789999987642    23456789987777768999999999987654 5


Q ss_pred             EEEEecccc-cchhhhhhhcccCC----------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSS----------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~----------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      .|+|||||. |+|.+++.......          ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.
T Consensus       107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~  186 (316)
T 2xir_A          107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV  186 (316)
T ss_dssp             CEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC
T ss_pred             eEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCC
Confidence            899999998 59999998733100          01227888999999999   889999999999999    8889998


Q ss_pred             Cchhhhhhhhc
Q 042769          538 PSPLLLSLMRL  548 (549)
Q Consensus       538 p~~~l~~Lmrd  548 (549)
                      .++..+.+++.
T Consensus       187 ~kl~Dfg~~~~  197 (316)
T 2xir_A          187 VKICDFGLARD  197 (316)
T ss_dssp             EEECCCGGGSC
T ss_pred             EEECCCccccc
Confidence            88888877653

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.60  E-value=6.7e-17  Score=167.33  Aligned_cols=137  Identities=26%  Similarity=0.284  Sum_probs=111.1

Q ss_pred             ceeeeeecccccccCCceEEEeeeecCchhHHHHHHHH--------------HhhhhHHHHHHHHhcCCCCCeeEEeeec
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--------------LHDVAFKEIQNLIASDQHPNIVRWYGVE  470 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--------------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~  470 (549)
                      +.+.|.+.+.||+|+||.||.+...+|+.||||++...              ..+.+.+|+..+..+ +||||+++++++
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~   98 (362)
T 3pg1_A           20 MQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF-HHPNILGLRDIF   98 (362)
T ss_dssp             TTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEE
T ss_pred             hccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhC-CCcCccceeeeE
Confidence            44459999999999999988865556999999976421              124567899766555 999999999998


Q ss_pred             -----cCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          471 -----NDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       471 -----~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                           ......|+|||||.|+|.+++..     ....+++..+..++.|+   |.|||+++|+|||||    |++.+|.+
T Consensus        99 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~  173 (362)
T 3pg1_A           99 VHFEEPAMHKLYLVTELMRTDLAQVIHD-----QRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDI  173 (362)
T ss_dssp             EECCTTTCCEEEEEEECCSEEHHHHHHC-----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCE
T ss_pred             EeccCCCcceEEEEEccCCCCHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCE
Confidence                 34457899999999999999876     23468999999999999   889999999999999    88899988


Q ss_pred             chhhhhhhh
Q 042769          539 SPLLLSLMR  547 (549)
Q Consensus       539 ~~~l~~Lmr  547 (549)
                      ++..+++++
T Consensus       174 kl~Dfg~~~  182 (362)
T 3pg1_A          174 TICDFNLAR  182 (362)
T ss_dssp             EECCTTC--
T ss_pred             EEEecCccc
Confidence            887777664

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.60  E-value=1e-16  Score=163.85  Aligned_cols=135  Identities=24%  Similarity=0.258  Sum_probs=111.9

Q ss_pred             eeeeecccccccCCceEEEe-----eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeecc--CcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVEN--DKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~--~~~~~  476 (549)
                      +.|++.+.||+|+||.||.+     +..+++.||||++...   ..+.+.+|+..+..+ +||||+++++++.  .....
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL-HSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCceeEEEEEEecCCCceE
Confidence            44999999999999998874     3567899999987532   334577899766555 9999999999876  55679


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||+ |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       102 ~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  175 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRH-----RARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAK  175 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHH-----GGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred             EEEEeecCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccce
Confidence            99999996 6999999863     2458999999999999   899999999999999    88899988888877765

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.60  E-value=4.6e-17  Score=174.90  Aligned_cols=134  Identities=19%  Similarity=0.201  Sum_probs=110.8

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||.||......+..||||++...  ..+.+.+|+..|..+ +||||+++++++.. +..|||||||. 
T Consensus       185 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~-~~~~iv~e~~~~  262 (452)
T 1fmk_A          185 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSE-EPIYIVTEYMSK  262 (452)
T ss_dssp             GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred             HceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEcC-CceEEEehhhcC
Confidence            38899999999999988754445567999988753  234577899666555 99999999999876 67899999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|.++++...    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.++.+++
T Consensus       263 gsL~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~  328 (452)
T 1fmk_A          263 GSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLAR  328 (452)
T ss_dssp             CBHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC
T ss_pred             CCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccce
Confidence            69999997622    3458889999999999   899999999999999    88999988888887765

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.60  E-value=5.1e-17  Score=162.65  Aligned_cols=135  Identities=22%  Similarity=0.280  Sum_probs=109.3

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH--HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----------
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR--ALHDVAFKEIQNLIASDQHPNIVRWYGVEND-----------  472 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~--~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----------  472 (549)
                      +.|++.+.||+|+||.||.+ +..+|+.||||++..  ...+.+.+|+..+.. ++||||+++++++..           
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLAS-LNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEECCCCCC-----
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHhhcchhhhhccc
Confidence            44999999999999998884 567899999997753  233456788866554 499999999998753           


Q ss_pred             --cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          473 --KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       473 --~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                        ....|+|||||+ |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~d  159 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSE-----NLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGD  159 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHS-----CGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECC
T ss_pred             ccCCceEEEEecCCCCCHHHhhhcc-----ccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEee
Confidence              567899999997 5999999862     3457788889999998   899999999999999    888898877776


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +.+++
T Consensus       160 fg~~~  164 (303)
T 1zy4_A          160 FGLAK  164 (303)
T ss_dssp             CCCCS
T ss_pred             Ccchh
Confidence            66543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.60  E-value=4.6e-17  Score=178.81  Aligned_cols=136  Identities=19%  Similarity=0.210  Sum_probs=112.0

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +.|++.+.||+|+||.||......+..||||++...  ..+.+.+|+..|..+ +||||+++++++.. +..|||||||.
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~hpniv~~~~~~~~-~~~~lv~e~~~  344 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL-RHEKLVQLYAVVSE-EPIYIVTEYMS  344 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEECCCT
T ss_pred             hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhC-CCCCEeeEEEEEee-ccceEeeehhc
Confidence            348999999999999988754445567999987643  234577899666555 99999999999876 67899999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                       |+|.++++...    ...+++..++.++.|+   |+|||+++|+|||||    |++.++..++.++.+++.
T Consensus       345 ~gsL~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          345 KGSLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  412 (535)
T ss_dssp             TEEHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTT
T ss_pred             CCcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEccccccee
Confidence             59999997622    2458889999999999   899999999999999    889999998888887763

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.60  E-value=1.4e-16  Score=162.99  Aligned_cols=135  Identities=22%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHH-HhcCCCCCeeEEeee-----ccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNL-IASDQHPNIVRWYGV-----ENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L-~~~l~HpNIVrl~g~-----~~~~~~~y  477 (549)
                      .+++ |++.+.||+|+||.||.. ..+++.||||++..........|.+.+ ...++||||+++++.     +......|
T Consensus        11 ~~~~-y~~~~~lg~G~~g~Vy~~-~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~   88 (336)
T 3g2f_A           11 DLDN-LKLLELIGRGRYGAVYKG-SLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL   88 (336)
T ss_dssp             CTTS-EEEEEEEEECSSEEEEEE-EETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred             ChHH-hheeeecccCCCeEEEEE-EECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence            3444 999999999999997764 568999999987654333344443322 234699999999974     33445689


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce---------eEEEeecc----ccccCCCCch
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV---------KVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~---------~IIHRDLK----Ll~~~G~p~~  540 (549)
                      +|||||+ |+|.+++..       ...++..+..++.|+   |+|||++         +|+|||||    |++.+|.+++
T Consensus        89 lv~e~~~~g~L~~~l~~-------~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL  161 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSL-------HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVI  161 (336)
T ss_dssp             EEECCCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEE
T ss_pred             EEEecCCCCcHHHHHhh-------cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEE
Confidence            9999997 599999976       235778888999998   8999999         99999999    8899999888


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+++++
T Consensus       162 ~DFG~a~  168 (336)
T 3g2f_A          162 SDFGLSM  168 (336)
T ss_dssp             CCCTTCE
T ss_pred             eecccee
Confidence            8877764

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.60  E-value=9.7e-17  Score=164.86  Aligned_cols=138  Identities=12%  Similarity=0.089  Sum_probs=112.1

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHHh--------------------hhhHHHHHHHHhcCCCCCeeEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALH--------------------DVAFKEIQNLIASDQHPNIVRWY  467 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~--------------------~~~~~Ei~~L~~~l~HpNIVrl~  467 (549)
                      .|.+.+.||+|+||.||.+.. +|+.||||++.....                    +.+.+|+..+..+ +||||++++
T Consensus        32 ~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~  109 (348)
T 2pml_X           32 DYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI-KNEYCLTCE  109 (348)
T ss_dssp             TEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC-CCTTBCCCS
T ss_pred             ceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC-CCCCcceEE
Confidence            399999999999999887544 999999998775422                    5667888666555 999999999


Q ss_pred             eeccCcceEEEEeccccc-chhhhhhhcccC--CcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCC
Q 042769          468 GVENDKDFVYLSLERCTC-SLDDLIQTYSDS--SCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADG  536 (549)
Q Consensus       468 g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~--~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G  536 (549)
                      +++...+..|+|||||+| +|.+++......  .....+++..++.++.|+   |.|||+ ++|+|||||    |++.+|
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~  189 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG  189 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTS
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCC
Confidence            999999999999999985 999983321111  114578999999999999   889998 999999999    888999


Q ss_pred             CCchhhhhhhh
Q 042769          537 HPSPLLLSLMR  547 (549)
Q Consensus       537 ~p~~~l~~Lmr  547 (549)
                      .+++..+.+++
T Consensus       190 ~~kl~dfg~~~  200 (348)
T 2pml_X          190 RVKLSDFGESE  200 (348)
T ss_dssp             CEEECCCTTCE
T ss_pred             cEEEecccccc
Confidence            88777766654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.60  E-value=5.7e-17  Score=164.77  Aligned_cols=143  Identities=17%  Similarity=0.115  Sum_probs=113.2

Q ss_pred             cceeeeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      ...+.|++.+.||+|+||.||.+ ..     .+++.||||++...    ....+.+|+..+.. ++||||+++++++...
T Consensus        22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~h~~i~~~~~~~~~~  100 (322)
T 1p4o_A           22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE-FNCHHVVRLLGVVSQG  100 (322)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGG-CCCTTBCCEEEEECSS
T ss_pred             chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHh-cCCCCEeeeEEEEccC
Confidence            34455999999999999998874 22     35788999977532    23346688866655 4999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccC----CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDS----SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~----~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                      +..|+|||||. |+|.+++...+..    .....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++.
T Consensus       101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~  180 (322)
T 1p4o_A          101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIG  180 (322)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEEC
T ss_pred             CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEEC
Confidence            99999999997 5999999863210    011346888899999998   899999999999999    88999988888


Q ss_pred             hhhhhh
Q 042769          542 LLSLMR  547 (549)
Q Consensus       542 l~~Lmr  547 (549)
                      .+.+++
T Consensus       181 Dfg~~~  186 (322)
T 1p4o_A          181 DFGMTR  186 (322)
T ss_dssp             CTTCCC
T ss_pred             cCcccc
Confidence            777665

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.59  E-value=1.2e-16  Score=162.81  Aligned_cols=133  Identities=23%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             eeeeecccccccCCceEEEe-----eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-----GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-----~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~  475 (549)
                      +.|++.+.||+|+||.||+.     +..+++.||||++...    ....+.+|+..+..+ +||||+++++++..  ...
T Consensus        31 r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~  109 (318)
T 3lxp_A           31 RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL-YHEHIIKYKGCCEDAGAAS  109 (318)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTTTE
T ss_pred             HHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhC-CCcchhhEEEEEecCCCce
Confidence            33599999999999998652     3457899999987643    234567899766555 89999999999986  467


Q ss_pred             EEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +++|||||. |+|.+++..       ..+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus       110 ~~lv~e~~~~~~L~~~l~~-------~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  182 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPR-------HSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAK  182 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGG-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEEecccCCcHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccc
Confidence            899999997 599999976       348899999999999   889999999999999    88999988888887765

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.59  E-value=1e-16  Score=157.98  Aligned_cols=131  Identities=17%  Similarity=0.155  Sum_probs=107.8

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc--ceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK--DFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~--~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.. ..+++.||||++...     ..+.+.+|+..+. .++||||+++++++...  ...++|||
T Consensus        12 y~~~~~lg~G~~g~V~~~-~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~-~l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           12 LNFLTKLNENHSGELWKG-RWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLR-IFSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             CEEEEEEEEETTEEEEEE-EETTEEEEEEEECCTTCCHHHHHHHHHHGGGGC-CCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             hHHHHHhcCCCcceEEEE-EECCeeEEEEEecccccCHHHHHHHHHHHHHHH-hcCCCchhheEEEEccCCCCCeEeeec
Confidence            999999999999987663 346889999977532     2345678886554 45999999999999887  78999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||+ |+|.+++....    ...+++..++.++.|+   |+|||+++  |+|||||    |++.+|.+++.++++
T Consensus        90 ~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~  159 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGT----NFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADV  159 (271)
T ss_dssp             CCTTCBHHHHHHSCS----SCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGS
T ss_pred             ccCCCcHHHHHhhcc----cCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccc
Confidence            998 59999998722    2358999999999999   89999999  9999999    888898888776654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.59  E-value=7e-17  Score=163.52  Aligned_cols=137  Identities=23%  Similarity=0.341  Sum_probs=108.6

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      ..+.|++.+.||+|+||.||.+ ...+|+.||||++... ....+.+|+..+..+ +||||+++++++...+..|+||||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e~  105 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQC-DSPHVVKYYGSYFKNTDLWIVMEY  105 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhC-CCCCCccEEEEEEeCCEEEEEeec
Confidence            3455999999999999998884 5567999999987643 234567888666555 999999999999999999999999


Q ss_pred             ccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.| +|.+++...     ...+++..+..++.|+   |.|||+++++|||||    |++.+|..++..+.+.+
T Consensus       106 ~~~~~L~~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  173 (314)
T 3com_A          106 CGAGSVSDIIRLR-----NKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAG  173 (314)
T ss_dssp             CTTEEHHHHHHHH-----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccch
Confidence            985 999998741     3568999999999999   889999999999999    78888888777766553

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.59  E-value=5.6e-17  Score=165.12  Aligned_cols=138  Identities=23%  Similarity=0.300  Sum_probs=113.9

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccC------cceE
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVEND------KDFV  476 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~------~~~~  476 (549)
                      ...|++.+.||+|+||.||.+ ...+|+.||||++...  ....+.+|+..+..+.+||||+++++++..      ....
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~  102 (326)
T 2x7f_A           23 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQL  102 (326)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceE
Confidence            344999999999999998884 5568999999987532  234567888777777689999999999876      4679


Q ss_pred             EEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||.| +|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~  177 (326)
T 2x7f_A          103 WLVMEFCGAGSVTDLIKNTK----GNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSA  177 (326)
T ss_dssp             EEEEECCTTEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC
T ss_pred             EEEEEcCCCCcHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCce
Confidence            999999985 9999998732    3568899999999999   899999999999999    78889988777776654

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.59  E-value=6.7e-17  Score=160.86  Aligned_cols=136  Identities=22%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             eeeeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .+.|++.+.||+|+||.||.+...+++.||||.+...  ..+.+.+|+..+..+ +||||+++++++.. +..++||||+
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~-~~~~~v~e~~   89 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL-QHQRLVRLYAVVTQ-EPIYIITEYM   89 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhC-CCcCcceEEEEEcC-CCcEEEEecC
Confidence            3459999999999999988765556778999977643  234567888766555 99999999999874 4589999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.+++....    ...+++..+..++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        90 ~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  157 (279)
T 1qpc_A           90 ENGSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLAR  157 (279)
T ss_dssp             TTCBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCCHHHHHhcCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccc
Confidence            7 59999997622    2368899999999999   899999999999999    78888888777776654

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.59  E-value=6.5e-17  Score=172.09  Aligned_cols=139  Identities=19%  Similarity=0.171  Sum_probs=107.8

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC------cceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND------KDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~------~~~~y  477 (549)
                      ....|++.+.||+|+||.||.+ ...+|+.||||++... .....+|++.|.. ++|||||+++++|..      ..+++
T Consensus        52 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~E~~il~~-l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD-KRFKNRELQIMRK-LDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-TTSCCHHHHHHHT-CCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ccceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc-chhHHHHHHHHHH-cCCCCccceeeEEeccCCCCcceeEE
Confidence            3445999999999999998884 5567999999987542 2334579866655 499999999998843      23478


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l~~Lmr  547 (549)
                      +|||||.++|.+++.....  ....+++..++.++.|+   |+|||+++|+|||||    |++.+ +..++.++++++
T Consensus       130 lv~e~~~~~l~~~~~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSR--AKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eehhcccccHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence            9999999988777764221  23568899999999999   899999999999999    77755 445777777665

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.59  E-value=9.4e-17  Score=161.96  Aligned_cols=133  Identities=24%  Similarity=0.250  Sum_probs=111.6

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||.. ...+++.||||++...    ..+.+.+|+..+..+ +||||+++++++......|+|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC-DSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEecCCeEEEEEE
Confidence            44999999999999998884 5677999999987543    234567888666554 99999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++| +|.+++..       +.+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       101 ~~~~~~L~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~  167 (303)
T 3a7i_A          101 YLGGGSALDLLEP-------GPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAG  167 (303)
T ss_dssp             CCTTEEHHHHHTT-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eCCCCcHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccce
Confidence            9985 99999865       458899999999999   889999999999999    78888888777776654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.59  E-value=1.2e-16  Score=159.61  Aligned_cols=136  Identities=20%  Similarity=0.226  Sum_probs=105.1

Q ss_pred             ceeeeeecccccccCCceEEEe-eee---cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIY---EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~---~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      ..+.|++.+.||+|+||.||.+ ...   .+..||+|++...    ..+.+.+|+..+..+ +||||+++++++. .+..
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-~~~~   90 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVIT-ENPV   90 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEC-SSSC
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCccceEEEEEc-cCcc
Confidence            3445999999999999998874 322   3457999976532    234567888666554 9999999999985 4568


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+|||||. |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        91 ~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  164 (281)
T 1mp8_A           91 WIIMELCTLGELRSFLQVR-----KYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  164 (281)
T ss_dssp             EEEEECCTTEEHHHHHHHT-----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             EEEEecCCCCCHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECcccccc
Confidence            99999998 5999999762     2458889999999999   899999999999999    88888888887777664

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.59  E-value=9.7e-17  Score=165.30  Aligned_cols=139  Identities=21%  Similarity=0.208  Sum_probs=107.9

Q ss_pred             ccceeeeeec-ccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceE
Q 042769          403 RNVGKLFVSN-TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFV  476 (549)
Q Consensus       403 ~~igk~y~~~-~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~  476 (549)
                      ..+.+.|.+. ++||+|+||.||.+ ...+|+.||||++...  ....+|+..+...++||||+++++++..    ....
T Consensus        24 ~~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           24 YAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS--PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS--HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc--HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence            3445558884 57999999998884 6678999999987532  2345566666677799999999999875    5568


Q ss_pred             EEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC---CCchhhhhh
Q 042769          477 YLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG---HPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G---~p~~~l~~L  545 (549)
                      ++|||||.| +|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.++   ..++..+.+
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~----~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~  177 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERG----DQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGF  177 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-----CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred             EEEEeccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEecccc
Confidence            999999975 9999998732    3468999999999999   899999999999999    666543   355555555


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       178 ~~  179 (336)
T 3fhr_A          178 AK  179 (336)
T ss_dssp             CE
T ss_pred             ce
Confidence            43

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.59  E-value=6e-17  Score=162.59  Aligned_cols=140  Identities=24%  Similarity=0.244  Sum_probs=100.5

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||.+ ...+++.||||++...    ....+.+|+..+. .++||||+++++++...+..++|||
T Consensus        15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~-~l~h~~i~~~~~~~~~~~~~~lv~e   93 (303)
T 2vwi_A           15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMS-QCHHPNIVSYYTSFVVKDELWLVMK   93 (303)
T ss_dssp             CCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCC-CCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred             hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHh-hcCCCCEeeEEEEEeecCCcEEEeh
Confidence            44999999999999998884 5668899999977643    2334567885554 4599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccC--CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDS--SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~--~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+. |+|.+++......  .....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+++++
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  169 (303)
T 2vwi_A           94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSA  169 (303)
T ss_dssp             CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred             hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence            997 5999998753211  123458899999999999   889999999999999    78899988877776553

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.59  E-value=1.3e-16  Score=163.05  Aligned_cols=139  Identities=23%  Similarity=0.267  Sum_probs=111.1

Q ss_pred             eeecccccccCCceEEEe-eeecCchh--HHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPV--AVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~V--AVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.+ ...+++.+  |+|++..    .....+.+|+..+.++.+||||+++++++...+..|+|||
T Consensus        27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e  106 (327)
T 1fvr_A           27 IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIE  106 (327)
T ss_dssp             CEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             ccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEe
Confidence            999999999999998884 55667654  8886642    2334567888776665599999999999999999999999


Q ss_pred             ccc-cchhhhhhhccc----------CCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          482 RCT-CSLDDLIQTYSD----------SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~----------~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      ||+ |+|.+++.....          ......+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+
T Consensus       107 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~Df  186 (327)
T 1fvr_A          107 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADF  186 (327)
T ss_dssp             CCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCT
T ss_pred             cCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEccc
Confidence            997 599999976320          0112468999999999999   899999999999999    8888888887777


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .+.+
T Consensus       187 g~~~  190 (327)
T 1fvr_A          187 GLSR  190 (327)
T ss_dssp             TCEE
T ss_pred             CcCc
Confidence            7654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.58  E-value=1.5e-16  Score=158.05  Aligned_cols=137  Identities=23%  Similarity=0.265  Sum_probs=109.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeecc--CcceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVEN--DKDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~--~~~~~yLV  479 (549)
                      .|++.+.||+|+||.||.. ...+++.||+|++..     ...+.+.+|+..+..+ +||||+++++++.  .....|+|
T Consensus         7 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~~~lv   85 (279)
T 2w5a_A            7 DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL-KHPNIVRYYDRIIDRTNTTLYIV   85 (279)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEEEGGGTEEEEE
T ss_pred             heeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhc-CCCCCCeEEEEEecCCCceEEEE
Confidence            3999999999999998884 566799999997752     2344567888666555 9999999999874  46789999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee-----EEEeecc----ccccCCCCchhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK-----VIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~-----IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ||||+ |+|.+++.....  ....+++..++.++.|+   |+|||+++     |+|||||    |++.+|.+++..+.++
T Consensus        86 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~  163 (279)
T 2w5a_A           86 MEYCEGGDLASVITKGTK--ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA  163 (279)
T ss_dssp             EECCTTEEHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHH
T ss_pred             EeCCCCCCHHHHHHhhcc--cCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchh
Confidence            99997 599999986321  12348899999999999   89999998     9999999    8889998887776665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       164 ~  164 (279)
T 2w5a_A          164 R  164 (279)
T ss_dssp             H
T ss_pred             e
Confidence            4

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.58  E-value=1.3e-16  Score=163.50  Aligned_cols=134  Identities=22%  Similarity=0.248  Sum_probs=104.5

Q ss_pred             eeeeecccccccCCceEEEe-eeecCch----hHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRP----VAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~----VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.|++.+.||+|+||.||++ ...+++.    ||+|.+...    ....+.+|+..+..+ +||||+++++++.... .+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~-~~   92 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTST-VQ   92 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHC-CBTTBCCEEEEEESSS-EE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhC-CCCCEeEEEEEEecCC-eE
Confidence            34999999999999998884 4555654    477866533    234567888666555 9999999999998765 67


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +++|++. |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|++++..+++++
T Consensus        93 ~v~e~~~~g~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EEEECCTTCBHHHHHHHS-----TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             EEEEecCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCccee
Confidence            8888886 6999999872     3568899999999999   899999999999999    88999998888777664

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.58  E-value=2.2e-16  Score=160.04  Aligned_cols=141  Identities=17%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             eeeeeecccccccCCceEEEe-eee---cCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIY---EGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--  474 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~---~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--  474 (549)
                      .+.|.+.+.||+|+||.||.+ ...   +++.||+|++...     ..+.+.+|+..+..+ +||||+++++++....  
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF-SHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTC-CCTTBCCCCEEEEC----
T ss_pred             HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcC-CCCCeeeeeEEEeecccc
Confidence            345999999999999998874 222   4568999987743     234567888666555 9999999999987655  


Q ss_pred             ---eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          475 ---FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       475 ---~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                         ..++|||||. |+|.+++...........+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Df  191 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADF  191 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSC
T ss_pred             CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeec
Confidence               3599999998 5999998653322234568999999999999   889999999999999    8889998887777


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      .+++
T Consensus       192 g~~~  195 (313)
T 3brb_A          192 GLSK  195 (313)
T ss_dssp             SCC-
T ss_pred             Ccce
Confidence            6654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.58  E-value=8.7e-17  Score=167.92  Aligned_cols=135  Identities=25%  Similarity=0.345  Sum_probs=112.1

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE-
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV-  476 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~-  476 (549)
                      .+.+.|.+.+.||+|+||.||.+ +..+|+.||||++...     ....+.+|+..+..+ +||||+++++++...+.. 
T Consensus        39 ~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~~  117 (371)
T 4exu_A           39 ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM-QHENVIGLLDVFTPASSLR  117 (371)
T ss_dssp             EEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSST
T ss_pred             cccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhc-CCCCchhhhhheeccCCcc
Confidence            45566999999999999998884 6778999999977532     234566888666555 999999999999877654 


Q ss_pred             -----EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          477 -----YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       477 -----yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                           |+|||||.|+|.+++..        .+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..++
T Consensus       118 ~~~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg  189 (371)
T 4exu_A          118 NFYDFYLVMPFMQTDLQKIMGM--------EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFG  189 (371)
T ss_dssp             TCCCCEEEEECCCEEHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTT
T ss_pred             cceeEEEEEccccccHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecC
Confidence                 99999999999888743        48899999999999   889999999999999    88999988888777


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       190 ~a~  192 (371)
T 4exu_A          190 LAR  192 (371)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            664

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.58  E-value=3e-16  Score=161.94  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=100.8

Q ss_pred             eeeeeecccccccCCceEEEe-eee---cCchhHHHHHHHH--------------HhhhhHHHHHHHHhcCCCCCeeEEe
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIY---EGRPVAVKRLVRA--------------LHDVAFKEIQNLIASDQHPNIVRWY  467 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~---~g~~VAVK~i~~~--------------~~~~~~~Ei~~L~~~l~HpNIVrl~  467 (549)
                      ++.|.+.+.||+|+||.||.+ ...   ++..+|||++...              ......+|+..+ ..++||||++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~-~~l~h~ni~~~~  114 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIER-KQLDYLGIPLFY  114 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHH-HTCSCCCCCCEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhh-ccccccCcceee
Confidence            355999999999999998884 333   6788888854321              112244566444 445999999999


Q ss_pred             eeccC----cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC
Q 042769          468 GVEND----KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG  536 (549)
Q Consensus       468 g~~~~----~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G  536 (549)
                      +++..    ....|+|||||.++|.+++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.++
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          115 GSGLTEFKGRSYRFMVMERLGIDLQKISGQ------NGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             EEEEEESSSCEEEEEEEECEEEEHHHHCBG------GGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSS
T ss_pred             cccccccCCCcEEEEEEeccCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCC
Confidence            99877    788999999996699999987      4478999999999999   899999999999999    788777


Q ss_pred             --CCchhhhhhhh
Q 042769          537 --HPSPLLLSLMR  547 (549)
Q Consensus       537 --~p~~~l~~Lmr  547 (549)
                        .+++..+++++
T Consensus       189 ~~~~kL~Dfg~a~  201 (345)
T 2v62_A          189 PDQVYLADYGLSY  201 (345)
T ss_dssp             TTSEEECCCTTCE
T ss_pred             CCcEEEEeCCCce
Confidence              66666666654

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.58  E-value=9.3e-17  Score=164.17  Aligned_cols=141  Identities=23%  Similarity=0.188  Sum_probs=112.1

Q ss_pred             eeeeecccccccCCceEEEe-eeecC-----chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEG-----RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g-----~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|.+.+.||+|+||.||.+ ...++     ..||+|.+...    ..+.+.+|+..+..+.+||||+++++++...+..
T Consensus        46 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  125 (333)
T 2i1m_A           46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPV  125 (333)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCce
Confidence            44999999999999998874 33333     47899976542    2345678887776665899999999999999999


Q ss_pred             EEEecccc-cchhhhhhhcccCC--------cccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSS--------CNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~--------~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      |+|||||+ |+|.+++.......        ....+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++
T Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl  205 (333)
T 2i1m_A          126 LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKI  205 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEEB
T ss_pred             EEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEEE
Confidence            99999997 59999998632100        02357888999999999   899999999999999    8888998888


Q ss_pred             hhhhhhh
Q 042769          541 LLLSLMR  547 (549)
Q Consensus       541 ~l~~Lmr  547 (549)
                      ..+.+++
T Consensus       206 ~Dfg~~~  212 (333)
T 2i1m_A          206 GDFGLAR  212 (333)
T ss_dssp             CCCGGGC
T ss_pred             Ccccccc
Confidence            8877765

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.58  E-value=1e-16  Score=163.89  Aligned_cols=133  Identities=18%  Similarity=0.166  Sum_probs=107.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCch----hHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRP----VAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~----VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|++.+.||+|+||.||++ ...+++.    ||+|.+...    ....+.+|+..+..+ +||||+++++++. ....++
T Consensus        14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL-DHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTC-CCTTBCCEEEEEC-BSSEEE
T ss_pred             HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcC-CCCCcCeEEEEEc-CCccEE
Confidence            3999999999999998884 5566665    666655322    123456788665554 9999999999986 456889


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||. |+|.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.+|++++..+++++
T Consensus        92 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  163 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQH-----RGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVAD  163 (325)
T ss_dssp             EEECCTTCBSHHHHHSS-----GGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred             EEEeCCCCCHHHHHHHc-----cccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCccc
Confidence            999997 6999999762     3568999999999999   899999999999999    88999998888888775

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.58  E-value=1.2e-16  Score=163.26  Aligned_cols=137  Identities=24%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             ceeeeeecccccccCCceEEEee-----eecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYEG-----IYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~~-----~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--  474 (549)
                      ..+.|++.+.||+|+||.||.+.     ..+++.||||++...   ..+.+.+|+..+..+ +||||+++++++...+  
T Consensus        39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~  117 (326)
T 2w1i_A           39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHDNIVKYKGVCYSAGRR  117 (326)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTC-CCTTBCCEEEEECC----
T ss_pred             CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEEecCCC
Confidence            34459999999999999988743     457899999987642   234567898766555 9999999999987654  


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      ..++||||++ |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.++
T Consensus       118 ~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~  192 (326)
T 2w1i_A          118 NLKLIMEYLPYGSLRDYLQKH-----KERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT  192 (326)
T ss_dssp             CCEEEECCCTTCBHHHHHHHS-----TTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             ceEEEEECCCCCCHHHHHHhc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcch
Confidence            7899999997 5999999872     2458889999999999   899999999999999    8888888877777665


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       193 ~  193 (326)
T 2w1i_A          193 K  193 (326)
T ss_dssp             E
T ss_pred             h
Confidence            4

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.58  E-value=9.9e-17  Score=165.82  Aligned_cols=134  Identities=25%  Similarity=0.340  Sum_probs=111.1

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce---
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF---  475 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~---  475 (549)
                      +.+.|.+.+.||+|+||.||.+ +..+|+.||||++...     ....+.+|+..+..+ +||||+++++++.....   
T Consensus        22 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~  100 (353)
T 3coi_A           22 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM-QHENVIGLLDVFTPASSLRN  100 (353)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSGGG
T ss_pred             cCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhc-CCCCcccHhheEeccccccc
Confidence            3445999999999999998884 6678999999987532     234567888666554 99999999999987654   


Q ss_pred             ---EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          476 ---VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       476 ---~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                         .|++|||+.|+|.+++..        .+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+++
T Consensus       101 ~~~~~lv~e~~~~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~  172 (353)
T 3coi_A          101 FYDFYLVMPFMQTDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL  172 (353)
T ss_dssp             CCCCEEEEECCSEEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred             ceeEEEEeccccCCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeeccc
Confidence               499999999999888743        48899999999999   889999999999999    889999888887777


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       173 ~~  174 (353)
T 3coi_A          173 AR  174 (353)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.58  E-value=1.3e-16  Score=166.27  Aligned_cols=135  Identities=12%  Similarity=0.017  Sum_probs=93.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHH--HHhcCCCCCeeEEeeecc-------
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQN--LIASDQHPNIVRWYGVEN-------  471 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~--L~~~l~HpNIVrl~g~~~-------  471 (549)
                      .|.+.+.||+|+||.||.+ ...+|+.||||++...      ..+.+.+|+..  +++. +||||++++..+.       
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEEE
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhee
Confidence            3999999999999998884 5678999999977642      23345566433  2233 7999888653332       


Q ss_pred             Cc-----------------ceEEEEecccccchhhhhhhcccCCcccccCchhh------hHHhhhe---eecccceeEE
Q 042769          472 DK-----------------DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA------TRAMIEY---KLRLDSVKVI  525 (549)
Q Consensus       472 ~~-----------------~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~------~~i~~qi---L~yLH~~~II  525 (549)
                      ..                 ..+|||||||+|+|.+++....     ..+++...      ..++.|+   |+|||+++|+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~-----~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~iv  216 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD-----FVYVFRGDEGILALHILTAQLIRLAANLQSKGLV  216 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHH-----HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhc-----cccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCc
Confidence            11                 4489999999999999998732     23444444      4666888   8999999999


Q ss_pred             Eeecc----ccccCCCCchhhhhhhhc
Q 042769          526 IRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       526 HRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||||    |++.+|.+++.++++++.
T Consensus       217 HrDikp~NIll~~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          217 HGHFTPDNLFIMPDGRLMLGDVSALWK  243 (371)
T ss_dssp             ETTCSGGGEEECTTSCEEECCGGGEEE
T ss_pred             cCcCCHHHEEECCCCCEEEEecceeee
Confidence            99999    899999999988888753

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.58  E-value=1.4e-16  Score=162.68  Aligned_cols=139  Identities=20%  Similarity=0.266  Sum_probs=112.2

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .|++.+.||+|+||.||.+ ...+|+.||||++...    ......+|+..+++.++||||+++++++...+..|+||||
T Consensus        23 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~  102 (327)
T 3aln_A           23 DLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMEL  102 (327)
T ss_dssp             SEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             HhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEee
Confidence            3999999999999998874 5567999999977532    2334567776677778999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.|+|.+++..... .....+++..+..++.|+   |.|||++ +|+|||||    |++.+|.+++..+++++
T Consensus       103 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A          103 MSTSFDKFYKYVYS-VLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISG  174 (327)
T ss_dssp             CSEEHHHHHHHHHH-TTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSC
T ss_pred             cCCChHHHHHHHHh-hhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCce
Confidence            99998888764211 113568889999999998   8899998 99999999    88888888777776654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.57  E-value=1.9e-16  Score=161.77  Aligned_cols=141  Identities=20%  Similarity=0.116  Sum_probs=105.8

Q ss_pred             eeeeeecccccccCCceEEEe------eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE------GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~------~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .+.|.+.+.||+|+||.||.+      +..+++.||||++..    .....+.+|+..+..+ +||||+++++++.....
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKF-NHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSS
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhC-CCCCCCeEEEEEcCCCC
Confidence            344999999999999998873      235678999998742    2334567888666555 99999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccC-CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC---Cchhhh
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDS-SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH---PSPLLL  543 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~-~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~---p~~~l~  543 (549)
                      .|+|||||. |+|.+++...... .....+++..++.++.|+   |.|||+++|+|||||    |++.+|.   +++..+
T Consensus       108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Df  187 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDF  187 (327)
T ss_dssp             CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCC
T ss_pred             cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECcc
Confidence            999999996 6999999874321 112458888899999999   889999999999999    7775543   555555


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      ++++
T Consensus       188 g~~~  191 (327)
T 2yfx_A          188 GMAR  191 (327)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            5543

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.57  E-value=9e-17  Score=163.42  Aligned_cols=140  Identities=24%  Similarity=0.291  Sum_probs=111.6

Q ss_pred             cceeeeeecccccccCCceEEEe-ee-ecCchhHHHHHHHHH-----hhhhHHHHHHHHhc--CCCCCeeEEeeecc---
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GI-YEGRPVAVKRLVRAL-----HDVAFKEIQNLIAS--DQHPNIVRWYGVEN---  471 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~-~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~--l~HpNIVrl~g~~~---  471 (549)
                      ...+.|++.+.||+|+||.||.+ .. .+|+.||+|++....     .....+|+..+..+  ++||||+++++++.   
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            34455999999999999998885 32 568899999775321     12455677554432  38999999999987   


Q ss_pred             --CcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          472 --DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       472 --~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                        .....++||||+.|+|.+++....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..
T Consensus        88 ~~~~~~~~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~D  163 (326)
T 1blx_A           88 TDRETKLTLVFEHVDQDLTTYLDKVP----EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD  163 (326)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHSC----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred             cCCCceEEEEEecCCCCHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEec
Confidence              667899999999999999998733    3458899999999999   889999999999999    888999888777


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +++++
T Consensus       164 fg~~~  168 (326)
T 1blx_A          164 FGLAR  168 (326)
T ss_dssp             CCSCC
T ss_pred             Ccccc
Confidence            76654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=2e-16  Score=162.65  Aligned_cols=134  Identities=21%  Similarity=0.146  Sum_probs=107.8

Q ss_pred             eeeecccccccCCceEEEe-eeec----CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYE----GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~----g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|.+.+.||+|+||.||.+ ...+    +..||||++...    ....+.+|+..+..+ +||||+++++++...+..++
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF-SHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSEEE
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhC-CCCCCCcEEEEEecCCCcEE
Confidence            3888899999999998874 3322    345999977532    233567888666554 99999999999999999999


Q ss_pred             Eeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||.| +|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       124 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  195 (333)
T 1mqb_A          124 ITEYMENGALDKFLREK-----DGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSR  195 (333)
T ss_dssp             EEECCTTEEHHHHHHHT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             EEeCCCCCcHHHHHHhC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcch
Confidence            9999985 999999762     3568899999999999   899999999999999    88889888877776654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.57  E-value=6.5e-17  Score=163.79  Aligned_cols=141  Identities=21%  Similarity=0.180  Sum_probs=104.0

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---------HhhhhHHHHHHHHhcC---CCCCeeEEe
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---------LHDVAFKEIQNLIASD---QHPNIVRWY  467 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---------~~~~~~~Ei~~L~~~l---~HpNIVrl~  467 (549)
                      ....+.+.|++.+.||+|+||.||.+ ...+++.||||++...         ......+|+..+..+.   +||||++++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            34455566999999999999998884 5678899999987532         1234557876655443   899999999


Q ss_pred             eeccCcceEEEEecc-cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc-cCCC
Q 042769          468 GVENDKDFVYLSLER-CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK-ADGH  537 (549)
Q Consensus       468 g~~~~~~~~yLVmE~-~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~-~~G~  537 (549)
                      +++...+..++|||+ +. ++|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++ .+|.
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~------~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~  178 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITE------KGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGC  178 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTE
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCe
Confidence            999999999999999 55 699999987      4568999999999999   899999999999999    677 7777


Q ss_pred             Cchhhhhhhh
Q 042769          538 PSPLLLSLMR  547 (549)
Q Consensus       538 p~~~l~~Lmr  547 (549)
                      .++..+.+.+
T Consensus       179 ~kl~dfg~~~  188 (312)
T 2iwi_A          179 AKLIDFGSGA  188 (312)
T ss_dssp             EEECCCSSCE
T ss_pred             EEEEEcchhh
Confidence            7766665543

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.57  E-value=1.8e-16  Score=159.09  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=107.2

Q ss_pred             eeeeecc-cccccCCceEEEe---eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          407 KLFVSNT-EIAKGSNGTVVYE---GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       407 k~y~~~~-~LG~G~fG~V~~~---~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.|.+.+ .||+|+||.||.+   ...+++.||||++...     ..+.+.+|+..+..+ +||||+++++++ ..+..|
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC-CCTTBCCEEEEE-ESSSEE
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEE-CCCCcE
Confidence            3488877 9999999998874   2345788999977643     134566888666555 999999999999 556789


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +||||+. |+|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        94 lv~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  165 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQ------NRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  165 (291)
T ss_dssp             EEEECCTTEEHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             EEEEeCCCCCHHHHHHh------CcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence            9999998 599999987      4568999999999999   899999999999999    78888887777766654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.57  E-value=2.1e-16  Score=157.98  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             eeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH----------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL----------HDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~----------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      .+.|++.+.||+|+||.||.+ ...+++.||+|++....          .+.+.+|+..+..+ +||||+++++++....
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL-NHPNIVKLYGLMHNPP   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTC-CCTTBCCEEEEETTTT
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhC-CCCCchhhheeecCCC
Confidence            344999999999999998884 56789999999774211          14567888666555 9999999999998765


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccccCCC
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWKADGH  537 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~~~G~  537 (549)
                        ++||||+. |+|.+++..     ....+++..++.++.|+   |+|||+++  |+|||||    |++.+|.
T Consensus        97 --~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~  162 (287)
T 4f0f_A           97 --RMVMEFVPCGDLYHRLLD-----KAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDE  162 (287)
T ss_dssp             --EEEEECCTTCBHHHHHHC-----TTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCT
T ss_pred             --eEEEEecCCCCHHHHHhc-----ccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCC
Confidence              69999998 699988866     23468999999999999   89999999  9999999    7777776

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.56  E-value=1.4e-16  Score=167.94  Aligned_cols=142  Identities=19%  Similarity=0.235  Sum_probs=107.6

Q ss_pred             CccceeeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC------cce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND------KDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~------~~~  475 (549)
                      +......|.+.++||+|+||.||.+....+..+|+|++... .....+|+..+.. ++||||+++++++..      ...
T Consensus        35 ~~~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~-~~~~~~E~~il~~-l~h~niv~l~~~~~~~~~~~~~~~  112 (394)
T 4e7w_A           35 GEQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD-KRFKNRELQIMRI-VKHPNVVDLKAFFYSNGDKKDEVF  112 (394)
T ss_dssp             CCEEEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC-TTSCCHHHHHHHT-CCCTTBCCEEEEEEEESSSSSCEE
T ss_pred             CCcccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC-cchHHHHHHHHHh-CCCCCcceEEEEEEecCCCCCceE
Confidence            34455569999999999999988864444445888876532 2234578866554 599999999999843      334


Q ss_pred             EEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc-cCCCCchhhhhhhh
Q 042769          476 VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK-ADGHPSPLLLSLMR  547 (549)
Q Consensus       476 ~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~-~~G~p~~~l~~Lmr  547 (549)
                      +|+|||||+++|.+.+.....  ....+++..++.++.|+   |+|||+++|+|||||    |++ .+|..++.++++++
T Consensus       113 ~~lv~e~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          113 LNLVLEYVPETVYRASRHYAK--LKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEEECCSEEHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEEeeccCccHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence            889999999877666553211  13568899999999999   899999999999999    777 78888887777664

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.56  E-value=3.6e-16  Score=156.71  Aligned_cols=133  Identities=20%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             eeecccccccCCceEEEe-eeecC---chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE-EEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEG---RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV-YLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g---~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~-yLV  479 (549)
                      |...++||+|+||.||.+ ...++   ..||+|++...    ..+.+.+|+..+..+ +||||+++++++...+.. +++
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGL-NHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTC-CCTTBCCCCEEECCSSSCCEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhC-CCCCeeeEEEEEecCCCCcEEE
Confidence            778899999999998874 33333   37999976632    234567888666555 999999999999876654 999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+. |+|.+++..     ....+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       102 ~e~~~~~~L~~~~~~-----~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  172 (298)
T 3pls_A          102 LPYMCHGDLLQFIRS-----PQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLAR  172 (298)
T ss_dssp             ECCCTTCBHHHHHHC-----TTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSC
T ss_pred             EecccCCCHHHHHhc-----cccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcc
Confidence            99996 699999976     23568888999999998   899999999999999    88999988888777664

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.56  E-value=2.6e-16  Score=157.41  Aligned_cols=138  Identities=21%  Similarity=0.161  Sum_probs=105.8

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCC-eeEEeeeccCcceEEEEe
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPN-IVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpN-IVrl~g~~~~~~~~yLVm  480 (549)
                      .+++.|++.+.||+|+||.||.+ +..+++.||||++... ....+.+|+..+..+ +|++ |..+..++...+..+++|
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMM-QGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHH-TTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHh-cCCCCCCeeeeecCCCCceEEEE
Confidence            45667999999999999998884 5678999999965432 334567888776666 5655 445555557778899999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      |||.|+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |+   +.+|.+++..+.+++
T Consensus        85 e~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~  156 (296)
T 4hgt_A           85 ELLGPSLEDLFNFC-----SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             ECCCCBHHHHHHHT-----TSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             EccCCCHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccce
Confidence            99977999999852     3468999999999999   899999999999999    66   788888777777654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.56  E-value=2.3e-16  Score=171.27  Aligned_cols=139  Identities=18%  Similarity=0.134  Sum_probs=114.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      .+++.|++.++||+|+||.||++ ...+++.||||++... ....+.+|+..+..+..|++|..+..++...+..+||||
T Consensus         4 ~i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             EETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CcCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            45566999999999999998884 5678999999976533 234567888777666555777778888888889999999


Q ss_pred             ccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          482 RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      ||.++|.+++..+     ...+++..++.++.|+   |+|||+++|||||||    |+   +.+|..++.++.+++
T Consensus        84 ~~g~sL~~ll~~~-----~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~  154 (483)
T 3sv0_A           84 LLGPSLEDLFNFC-----SRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK  154 (483)
T ss_dssp             CCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             CCCCCHHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcce
Confidence            9988999999862     3468999999999999   899999999999999    66   688888888887765

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.56  E-value=2.1e-16  Score=158.27  Aligned_cols=136  Identities=23%  Similarity=0.271  Sum_probs=109.9

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +.+.|++.+.||+|+||.||.+ ...+++.||||++...     ....+.+|+..+..+ +||||+++++++......|+
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~~~~l   98 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL-DHPNIMKLFEILEDSSSFYI   98 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTC-CCTTBCCEEEEEECSSEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhc-cCCCccEEEEEEeCCCeEEE
Confidence            3345999999999999998884 5568999999987543     123566888666555 99999999999999999999


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC---CCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG---HPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G---~p~~~l~~Lmr  547 (549)
                      ||||+. ++|.+++..      ...+++..++.++.|+   |.|||+++++|||||    |++.++   .+++..+.+++
T Consensus        99 v~e~~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~  172 (287)
T 2wei_A           99 VGELYTGGELFDEIIK------RKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (287)
T ss_dssp             EECCCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred             EEEccCCCCHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence            999997 599999876      4568999999999999   889999999999999    676544   35555555543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.56  E-value=4.1e-16  Score=172.57  Aligned_cols=126  Identities=11%  Similarity=0.065  Sum_probs=97.2

Q ss_pred             ccccccCCceEEE-eeeecCchhHHHHHHH-------------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          413 TEIAKGSNGTVVY-EGIYEGRPVAVKRLVR-------------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       413 ~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~-------------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      ..++.|++|.+.. +..+.|+.+|||.+.+             ...+.+.+|++.|.++..|+||+++++++++++..||
T Consensus       240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yL  319 (569)
T 4azs_A          240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWL  319 (569)
T ss_dssp             CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEE
T ss_pred             hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEE
Confidence            4567777776444 4567788888886632             1234577899888888789999999999999999999


Q ss_pred             Eeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||+| +|.++|..      .+.+++.   .++.||   |+|||++||||||||    |++.+|++++.+++++|
T Consensus       320 VMEyv~G~~L~d~i~~------~~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr  387 (569)
T 4azs_A          320 VMEKLPGRLLSDMLAA------GEEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIV  387 (569)
T ss_dssp             EEECCCSEEHHHHHHT------TCCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEE
T ss_pred             EEecCCCCcHHHHHHh------CCCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCe
Confidence            9999986 99999987      4456544   467787   899999999999999    89999999999999876

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.56  E-value=3.4e-16  Score=156.65  Aligned_cols=132  Identities=18%  Similarity=0.195  Sum_probs=104.3

Q ss_pred             cccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          412 NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      ..+||+|+||.||.+ ...+++.||||.+...   ..+.+.+|+..+.. ++||||+++++++...+..++|||||+ |+
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~  105 (295)
T 2clq_A           27 RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKH-LKHKNIVQYLGSFSENGFIKIFMEQVPGGS  105 (295)
T ss_dssp             BCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEEEECCSEEE
T ss_pred             cEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHh-CCCCCEeeEeeEEEeCCcEEEEEEeCCCCC
Confidence            348999999998884 5677899999976532   23456678865544 499999999999999999999999997 69


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-CCCCchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-DGHPSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-~G~p~~~l~~Lmr  547 (549)
                      |.+++....   ....+++..+..++.|+   |.|||+++|+|||||    |++. +|.+++..+.+++
T Consensus       106 L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~  171 (295)
T 2clq_A          106 LSALLRSKW---GPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSK  171 (295)
T ss_dssp             HHHHHHHTT---CCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred             HHHHHHhhc---cCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeeccccc
Confidence            999998732   12345677888888888   899999999999999    6776 7887777766554

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.55  E-value=9.8e-17  Score=165.95  Aligned_cols=135  Identities=11%  Similarity=0.125  Sum_probs=106.5

Q ss_pred             eeeeeecccccccCCceEEEe-eee--------cCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeE-----------
Q 042769          406 GKLFVSNTEIAKGSNGTVVYE-GIY--------EGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVR-----------  465 (549)
Q Consensus       406 gk~y~~~~~LG~G~fG~V~~~-~~~--------~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVr-----------  465 (549)
                      ++.|++.+.||+|+||.||.+ ...        .++.||||++...  ..+.+|+..+..+ +||||++           
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--~~~~~E~~~l~~l-~h~niv~~~~~~~~~~~~  117 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--GRLFNEQNFFQRA-AKPLQVNKWKKLYSTPLL  117 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--STHHHHHHHHHHH-CCHHHHHHHHHHTTCTTC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--chHHHHHHHHHHh-cccchhhhhhhhccCCcc
Confidence            456999999999999998884 443        4889999987643  4577888766555 8999887           


Q ss_pred             ----EeeeccC-cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc
Q 042769          466 ----WYGVEND-KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK  533 (549)
Q Consensus       466 ----l~g~~~~-~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~  533 (549)
                          +++++.. ....|+|||||.|+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++
T Consensus       118 ~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~----~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~  193 (352)
T 2jii_A          118 AIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSP----KHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVD  193 (352)
T ss_dssp             SCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSG----GGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEE
T ss_pred             CccchhhccccCCcEEEEEecCCCcCHHHHHHhCC----cCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEc
Confidence                4555554 67899999999779999998732    3679999999999999   899999999999999    888


Q ss_pred             cCC--CCchhhhhhhh
Q 042769          534 ADG--HPSPLLLSLMR  547 (549)
Q Consensus       534 ~~G--~p~~~l~~Lmr  547 (549)
                      .+|  ..++..+.+++
T Consensus       194 ~~~~~~~kl~Dfg~a~  209 (352)
T 2jii_A          194 PEDQSQVTLAGYGFAF  209 (352)
T ss_dssp             TTEEEEEEECCGGGCB
T ss_pred             CCCCceEEEecCccee
Confidence            888  66666666654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.55  E-value=1.6e-16  Score=162.24  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             CCccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---------hhhhHHHHHHHHhcC-CCCCeeEEeee
Q 042769          401 QGRNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---------HDVAFKEIQNLIASD-QHPNIVRWYGV  469 (549)
Q Consensus       401 ~~~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---------~~~~~~Ei~~L~~~l-~HpNIVrl~g~  469 (549)
                      ....+.+.|++.+.||+|+||.||.+ ...+++.||||++....         ...+.+|+..+..+. .||||++++++
T Consensus        37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~  116 (320)
T 3a99_A           37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW  116 (320)
T ss_dssp             ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred             ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence            33445555999999999999998884 56789999999886542         134567887776664 37999999999


Q ss_pred             ccCcceEEEEecccc--cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc-cCCCCc
Q 042769          470 ENDKDFVYLSLERCT--CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK-ADGHPS  539 (549)
Q Consensus       470 ~~~~~~~yLVmE~~~--GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~-~~G~p~  539 (549)
                      +...+..+++||++.  ++|.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++ .+|.++
T Consensus       117 ~~~~~~~~lv~e~~~~~~~L~~~l~~------~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~k  190 (320)
T 3a99_A          117 FERPDSFVLILERPEPVQDLFDFITE------RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELK  190 (320)
T ss_dssp             EECSSEEEEEEECCSSEEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEE
T ss_pred             EecCCcEEEEEEcCCCCccHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEE
Confidence            999999999999996  699999987      4568999999999999   899999999999999    777 677777


Q ss_pred             hhhhhhhh
Q 042769          540 PLLLSLMR  547 (549)
Q Consensus       540 ~~l~~Lmr  547 (549)
                      +..+.+.+
T Consensus       191 L~Dfg~~~  198 (320)
T 3a99_A          191 LIDFGSGA  198 (320)
T ss_dssp             ECCCTTCE
T ss_pred             EeeCcccc
Confidence            77766654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.55  E-value=5e-16  Score=156.06  Aligned_cols=135  Identities=19%  Similarity=0.133  Sum_probs=106.8

Q ss_pred             eeeeecccccccCCceEEEee-ee---cCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeec-cCcceEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG-IY---EGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVE-NDKDFVY  477 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~-~~---~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~-~~~~~~y  477 (549)
                      ..|++.+.||+|+||.||.+. ..   ++..+|+|.+..    ...+.+.+|+..+..+ +||||+++++++ ..++..|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l-~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF-SHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTC-CCTTBCCCCEEECCSSSCCE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhC-CCCCEeeeeeEEEcCCCceE
Confidence            349999999999999988742 22   233588887653    2234567888666554 999999999985 5566789


Q ss_pred             EEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++||||.| +|.++++.     ....+++..+..++.|+   |+|||+++|+|||||    |++.+|..++..+++++
T Consensus       104 ~v~e~~~~~~L~~~l~~-----~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~  176 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRN-----ETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLAR  176 (298)
T ss_dssp             EEEECCTTCBHHHHHHC-----TTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred             EEEeCCCCCCHHHHHHh-----cccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccc
Confidence            99999985 99999976     23457888999999998   889999999999999    88999988888887765

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.55  E-value=4.5e-16  Score=157.47  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=101.4

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||.||.+ ...+|+.||||++...    .......|...+++.++||||+++++++...+..|+||||+
T Consensus        27 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~  106 (318)
T 2dyl_A           27 LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM  106 (318)
T ss_dssp             EEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             ccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc
Confidence            899999999999998884 5567999999977532    22234455555667779999999999999999999999999


Q ss_pred             ccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 TCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+.+..+...     ....+++..++.++.|+   |.|||++ +|+|||||    |++.+|.+++..+.+++
T Consensus       107 ~~~~~~l~~~-----~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  173 (318)
T 2dyl_A          107 GTCAEKLKKR-----MQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISG  173 (318)
T ss_dssp             SEEHHHHHHH-----HTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-
T ss_pred             CCcHHHHHHH-----hccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCch
Confidence            6556555543     13568899999999999   8899985 99999999    88899988877776654

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=3.8e-16  Score=156.37  Aligned_cols=132  Identities=20%  Similarity=0.185  Sum_probs=105.3

Q ss_pred             eeec-ccccccCCceEEEe---eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSN-TEIAKGSNGTVVYE---GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~-~~LG~G~fG~V~~~---~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |.+. +.||+|+||.||.+   ...+++.||||++..    ...+.+.+|+..+..+ +||||+++++++. .+..++||
T Consensus        11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~-~~~~~lv~   88 (287)
T 1u59_A           11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIGVCQ-AEALMLVM   88 (287)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEE-SSSEEEEE
T ss_pred             hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhC-CCCCEeEEEEEec-CCCcEEEE
Confidence            5554 49999999998874   234678899998764    2344577898776665 9999999999994 45689999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||. |+|.+++..     ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        89 e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~  158 (287)
T 1u59_A           89 EMAGGGPLHKFLVG-----KREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSK  158 (287)
T ss_dssp             ECCTTEEHHHHHTT-----CTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             EeCCCCCHHHHHHh-----CCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECccccee
Confidence            9998 499999975     23568999999999999   899999999999999    78888887777776654

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.55  E-value=3.9e-16  Score=157.48  Aligned_cols=134  Identities=22%  Similarity=0.185  Sum_probs=108.5

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |...+.||+|+||.||.+ ..+++.||||++...       ..+.+.+|+..+..+ +||||+++++++...+..+++||
T Consensus        33 ~~~~~~lg~G~~g~Vy~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~~~~~lv~e  110 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKG-YVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC-QHENLVELLGFSSDGDDLCLVYV  110 (307)
T ss_dssp             TTTCCEEEECSSEEEEEE-ESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEE
T ss_pred             cccCCccccCCCeEEEEE-EECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc-CCCCeEEEEEEEecCCceEEEEE
Confidence            445589999999987764 347889999976531       234567888666555 99999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |++ |+|.+++....   ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       111 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~  181 (307)
T 2nru_A          111 YMPNGSLLDRLSCLD---GTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR  181 (307)
T ss_dssp             CCTTCBHHHHHHTGG---GCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             ecCCCcHHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeeccccc
Confidence            997 69999997532   13458889999999998   899999999999999    88899988887777654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.55  E-value=3.4e-16  Score=156.10  Aligned_cols=134  Identities=19%  Similarity=0.166  Sum_probs=107.2

Q ss_pred             eeeeecccccccCCceEEEee-e---ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG-I---YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~-~---~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +.|.+.+.||+|+||.||.+. .   .++..||+|.+...    ..+.+.+|+..+..+ +||||+++++++... ..|+
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~h~~i~~~~~~~~~~-~~~~   89 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNL-DHPHIVKLIGIIEEE-PTWI   89 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHH-CCTTBCCEEEEECSS-SCEE
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhC-CCCCcceEEEEEcCC-CCEE
Confidence            349999999999999988742 2   23456999977642    344677888766655 999999999998754 5689


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+. |+|.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        90 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  161 (281)
T 3cc6_A           90 IMELYPYGELGHYLERN-----KNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSR  161 (281)
T ss_dssp             EEECCTTCBHHHHHHHH-----TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred             EEecCCCCCHHHHHHhc-----cccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCc
Confidence            999998 5999999762     2458889999999998   899999999999999    78888888777776654

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.55  E-value=2.8e-16  Score=159.84  Aligned_cols=129  Identities=22%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             CccceeeeeecccccccCCceEEEe-e-eecCchhHHHHHHH--HHhhhhHHHHHHHHhc-----CCCCCeeEEeeeccC
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-G-IYEGRPVAVKRLVR--ALHDVAFKEIQNLIAS-----DQHPNIVRWYGVEND  472 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~-~~~g~~VAVK~i~~--~~~~~~~~Ei~~L~~~-----l~HpNIVrl~g~~~~  472 (549)
                      +..+.+.|++.+.||+|+||.||.+ . ..+++.||||++..  ...+...+|+..+..+     ..|++|+++++++..
T Consensus         9 g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~   88 (339)
T 1z57_A            9 GDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH   88 (339)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred             CCCccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence            3445556999999999999998874 3 45789999997753  2234566777655443     234569999999999


Q ss_pred             cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc
Q 042769          473 KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA  534 (549)
Q Consensus       473 ~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~  534 (549)
                      .+..|+|||||.++|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.
T Consensus        89 ~~~~~lv~e~~~~~l~~~l~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~  153 (339)
T 1z57_A           89 HGHICIVFELLGLSTYDFIKENG----FLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQ  153 (339)
T ss_dssp             TTEEEEEEECCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESC
T ss_pred             CCcEEEEEcCCCCCHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEec
Confidence            99999999999889999998732    2468889999999999   899999999999999    6665

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.55  E-value=3.3e-16  Score=164.25  Aligned_cols=135  Identities=19%  Similarity=0.111  Sum_probs=104.0

Q ss_pred             eeeecccccccCCceEEEee-eec---CchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeecc-CcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-IYE---GRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVEN-DKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~~~---g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~-~~~~~yL  478 (549)
                      .|.+.+.||+|+||.||.+. ..+   +..||+|.+..    .....+.+|+..+.. ++||||+++++++. ..+..|+
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~~l  168 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVLSLLGICLRSEGSPLV  168 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTT-CCCTTBCCCCEEECCCSSCCEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHh-CCCCCcceEEEEEEcCCCCeEE
Confidence            38888999999999988742 222   24689987653    223456788865544 59999999999864 4567899


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||||. |+|.++++..     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++.
T Consensus       169 v~e~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRNE-----THNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD  241 (373)
T ss_dssp             EEECCTTCBHHHHHHCT-----TCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             EEECCCCCCHHHHHhhc-----ccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccc
Confidence            999998 5999999762     3457888899999998   899999999999999    889999998888887763

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.54  E-value=3.5e-16  Score=175.32  Aligned_cols=128  Identities=22%  Similarity=0.227  Sum_probs=106.4

Q ss_pred             cccccccCCceEEEe---eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          412 NTEIAKGSNGTVVYE---GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~---~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .++||+|+||.||++   ...+++.||||+++...     .+.+.+|+..|..+ +|||||++++++.. +..+||||||
T Consensus       374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l-~hpnIv~l~~~~~~-~~~~lv~E~~  451 (635)
T 4fl3_A          374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGICEA-ESWMLVMEMA  451 (635)
T ss_dssp             EEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHC-CCTTBCCEEEEEES-SSEEEEEECC
T ss_pred             CCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEec-CCEEEEEEcc
Confidence            458999999998874   23456889999886532     24567888666555 99999999999975 4588999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      . |+|.++++.      ...+++..++.++.|+   |+|||+++|||||||    |++.+|.+++.++++++
T Consensus       452 ~~g~L~~~l~~------~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~  517 (635)
T 4fl3_A          452 ELGPLNKYLQQ------NRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSK  517 (635)
T ss_dssp             TTEEHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHH
T ss_pred             CCCCHHHHHhh------CCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCcc
Confidence            7 599999977      4568999999999999   899999999999999    88999998888888765

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.54  E-value=5.2e-16  Score=157.39  Aligned_cols=137  Identities=17%  Similarity=0.199  Sum_probs=110.4

Q ss_pred             cceeeeeecccccccCCceEEEeeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCC-CCCeeEEeeeccCcceEE
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQ-HPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~~~~y  477 (549)
                      ..++.|++.+.||+|+||.||.+...+++.||||++..     ...+.+.+|+..+..+.. ||||+++++++......|
T Consensus        25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~  104 (313)
T 3cek_A           25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  104 (313)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred             eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence            34566999999999999998886445688999997642     233456788877766633 699999999999999999


Q ss_pred             EEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++||++.++|.+++..      ...+++..++.++.|+   |.|||+++|+|||||    |+ .+|.+++..+++++
T Consensus       105 lv~e~~~~~L~~~l~~------~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~-~~~~~kL~Dfg~~~  174 (313)
T 3cek_A          105 MVMECGNIDLNSWLKK------KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI-VDGMLKLIDFGIAN  174 (313)
T ss_dssp             EEECCCSEEHHHHHHH------CSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEE-ETTEEEECCCSSSC
T ss_pred             EEEecCCCcHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEE-ECCeEEEeeccccc
Confidence            9999777899999987      4568888999999999   889999999999999    45 45666666555543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.53  E-value=4.5e-16  Score=173.73  Aligned_cols=130  Identities=18%  Similarity=0.171  Sum_probs=106.3

Q ss_pred             cccccccCCceEEEe-ee--ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          412 NTEIAKGSNGTVVYE-GI--YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~-~~--~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ...||+|+||.||.. ..  .++..||||+++..    ..+.+.+|+..|.. ++|||||++++++.. +..|||||||.
T Consensus       341 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~-l~hpniv~l~~~~~~-~~~~lv~E~~~  418 (613)
T 2ozo_A          341 DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQ-LDNPYIVRLIGVCQA-EALMLVMEMAG  418 (613)
T ss_dssp             EEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTT-CCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred             CcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHh-CCCCCEeeEEEEecc-CCeEEEEEeCC
Confidence            348999999998874 22  34678999988642    23457789966654 499999999999976 56899999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                       |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++++++.
T Consensus       419 ~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          419 GGPLHKFLVGK-----REEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             TCBHHHHHTTC-----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTT
T ss_pred             CCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCccc
Confidence             5999999762     3568999999999999   899999999999999    889999888888887763

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.53  E-value=1e-15  Score=152.85  Aligned_cols=134  Identities=26%  Similarity=0.231  Sum_probs=101.9

Q ss_pred             eeeeecccccccCCceEEEee-e-ecC--chhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEG-I-YEG--RPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~-~-~~g--~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~  476 (549)
                      +.|++.+.||+|+||.||.+. . .++  ..||||++...      ..+.+.+|+..+..+ +||||+++++++.... .
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l-~h~~i~~~~~~~~~~~-~   95 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-DHRNLIRLYGVVLTPP-M   95 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSSS-C
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhC-CCCCcccEEEEEccCC-c
Confidence            449999999999999988743 2 233  36899988743      234567888666555 9999999999998765 8


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++||||+. |+|.+++...     ...+++..+..++.|+   |.|||+++|+|||||    |++.+|.+++..+.+++
T Consensus        96 ~~v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~  169 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKH-----QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMR  169 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred             eeeEecccCCCHHHHHHhc-----cCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccc
Confidence            89999997 6999999862     3468899999999999   889999999999999    78888887777776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.53  E-value=3.8e-15  Score=154.24  Aligned_cols=134  Identities=16%  Similarity=0.249  Sum_probs=106.4

Q ss_pred             CceeccCCCcccccc-ccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcch----------hhhhhcCC
Q 042769            1 VSWTFGTGTPIYSSY-QAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSI----------DDYVKTAP   68 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~----------~~~v~~sP   68 (549)
                      ++|++++|+.+..+| +++          |++..+.+|.++.++.||++|+ +|+.+|.+.+          ...+.++|
T Consensus        30 ~~W~~~~~~~~~~~~~~~~----------p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~   99 (376)
T 3q7m_A           30 TAWSTSVGSGIGNFYSNLH----------PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV   99 (376)
T ss_dssp             EEEEECCTTTTTTSCCCCC----------CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE
T ss_pred             EEeEEecCCCccccceeec----------cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc
Confidence            479999987653221 122          7777888888889999999999 8999999998          44577889


Q ss_pred             CcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEE
Q 042769           69 HITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLF  148 (549)
Q Consensus        69 ~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  148 (549)
                      ++. +|.||+|+.++.+|++|++||+++|++..+....                           ..+...    .+.||
T Consensus       100 ~~~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~---------------------------~~p~~~----~~~v~  147 (376)
T 3q7m_A          100 TVS-GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL---------------------------SRPVVS----DGLVL  147 (376)
T ss_dssp             EEE-TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC---------------------------SCCEEE----TTEEE
T ss_pred             eEe-CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE---------------------------cCCEEE----CCEEE
Confidence            888 9999999999999999999999999998764100                           111111    27999


Q ss_pred             EEcccceeecccCCCCCceeeeeeehhh
Q 042769          149 ITRTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       149 i~r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      ++..++.|+|+|+++|+++|++....-.
T Consensus       148 v~~~~g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          148 IHTSNGQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred             EEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence            9999999999999999999999886543

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.53  E-value=3.9e-16  Score=156.27  Aligned_cols=138  Identities=21%  Similarity=0.161  Sum_probs=108.3

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCC-eeEEeeeccCcceEEEEe
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPN-IVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpN-IVrl~g~~~~~~~~yLVm  480 (549)
                      .+++.|++.+.||+|+||.||.+ +..+|+.||||++... ..+.+.+|+..+..+ +|++ +..+..++......++||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMM-QGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHH-TTSTTCCCEEEEEEETTEEEEEE
T ss_pred             eeccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHh-hcCCCCCccccccCCCCceEEEE
Confidence            34556999999999999998884 5678999999976532 233567888776666 6665 445555556677889999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      ||+.|+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |+   +.++.+++..+.+++
T Consensus        85 e~~~~~L~~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  156 (296)
T 3uzp_A           85 ELLGPSLEDLFNFC-----SRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  156 (296)
T ss_dssp             ECCCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCE
T ss_pred             EecCCCHHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcc
Confidence            99977999999752     3468999999999999   899999999999999    66   577877777776654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.53  E-value=9.5e-16  Score=160.55  Aligned_cols=139  Identities=20%  Similarity=0.121  Sum_probs=109.5

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCC-----CeeEEeeeccCcceE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHP-----NIVRWYGVENDKDFV  476 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~Hp-----NIVrl~g~~~~~~~~  476 (549)
                      +.+.|++.+.||+|+||+||++ ...+++.||||++...  ......+|+..+..+..|+     +|+++++++...+..
T Consensus        52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  131 (382)
T 2vx3_A           52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL  131 (382)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred             eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence            3445999999999999998884 6677899999987532  2334556775555443455     499999999999999


Q ss_pred             EEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc--ceeEEEeecc----ccc--cCCCCchhhhhh
Q 042769          477 YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD--SVKVIIRDLS----LWK--ADGHPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH--~~~IIHRDLK----Ll~--~~G~p~~~l~~L  545 (549)
                      |||||||.|+|.+++....    ...+++..++.++.|+   |.|||  +++|+|||||    |+.  .++.+++..+++
T Consensus       132 ~lv~e~~~~~L~~~l~~~~----~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~  207 (382)
T 2vx3_A          132 CLVFEMLSYNLYDLLRNTN----FRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGS  207 (382)
T ss_dssp             EEEEECCCCBHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             EEEEecCCCCHHHHHhhcC----cCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence            9999999999999998732    3458899999999999   88999  5799999999    663  466677777766


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       208 a~  209 (382)
T 2vx3_A          208 SC  209 (382)
T ss_dssp             CE
T ss_pred             ce
Confidence            54

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.53  E-value=2.8e-16  Score=156.43  Aligned_cols=134  Identities=25%  Similarity=0.288  Sum_probs=105.8

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-ceEEEEeccccc
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-DFVYLSLERCTC  485 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-~~~yLVmE~~~G  485 (549)
                      .|++.+.||+|+||.||.. ..+|+.||||++... ..+.+.+|+..+.. ++||||+++++++... +..|+||||+.|
T Consensus        22 ~y~~~~~lg~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~~~~~~~~lv~e~~~~   99 (278)
T 1byg_A           22 ELKLLQTIGKGEFGDVMLG-DYRGNKVAVKCIKNDATAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMAK   99 (278)
T ss_dssp             GEEEEEEEEECSSCEEEEE-EETTEEEEEEECCCCC--HHHHHTHHHHTT-CCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             hceEEeEEecCCCceEEEE-EEcCCEEEEEEecchhHHHHHHHHHHHHHh-CCCCCEeeEEEEEEcCCCceEEEEecCCC
Confidence            3999999999999997764 456889999987643 23456788866554 4999999999986544 578999999985


Q ss_pred             -chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          486 -SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       486 -sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                       +|.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++..+.+++
T Consensus       100 ~~L~~~l~~~~----~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~  165 (278)
T 1byg_A          100 GSLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTK  165 (278)
T ss_dssp             EEHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--
T ss_pred             CCHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccc
Confidence             9999998732    2347888899999998   889999999999999    78888888777766554

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.52  E-value=9.2e-16  Score=151.77  Aligned_cols=129  Identities=21%  Similarity=0.181  Sum_probs=99.6

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHH-------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||.||.+ ..+++.||||++....       .+.+.+|+..+.. ++||||+++++++...+..|+|||
T Consensus         9 ~~~~~~lg~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~i~~~~~~~~~~~~~~lv~e   86 (271)
T 3dtc_A            9 LTLEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAM-LKHPNIIALRGVCLKEPNLCLVME   86 (271)
T ss_dssp             EEEEEEEEEETTEEEEEE-EETTEEEEEEEC----------CHHHHHHHHHHHHH-CCCTTBCCEEEEECCC--CEEEEE
T ss_pred             eeeeeeeccCCCeEEEEE-EEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHh-cCCCCEeeEEEEEecCCceEEEEE
Confidence            999999999999997764 3468899999776431       2345678855544 499999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee---EEEeecc----cccc--------CCCCchhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK---VIIRDLS----LWKA--------DGHPSPLL  542 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~---IIHRDLK----Ll~~--------~G~p~~~l  542 (549)
                      ||. |+|.+++..       ..+++..++.++.|+   |.|||+++   |+|||||    |++.        ++.++...
T Consensus        87 ~~~~~~L~~~~~~-------~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D  159 (271)
T 3dtc_A           87 FARGGPLNRVLSG-------KRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD  159 (271)
T ss_dssp             CCTTEEHHHHHTS-------SCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred             cCCCCCHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence            997 599998854       468899999999999   89999999   9999999    6664        55555555


Q ss_pred             hhhh
Q 042769          543 LSLM  546 (549)
Q Consensus       543 ~~Lm  546 (549)
                      +.++
T Consensus       160 fg~~  163 (271)
T 3dtc_A          160 FGLA  163 (271)
T ss_dssp             CCC-
T ss_pred             CCcc
Confidence            5544

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.52  E-value=5.5e-16  Score=155.55  Aligned_cols=136  Identities=21%  Similarity=0.176  Sum_probs=102.7

Q ss_pred             ccceeeeeecccccccCCceEEEeeeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      ......|++.+.||+|+||.||... . ...||+|++..     ...+.+.+|+..+.. ++||||+++++++. ....+
T Consensus        20 ei~~~~y~~~~~lG~G~~g~Vy~~~-~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~~iv~~~~~~~-~~~~~   95 (289)
T 3og7_A           20 EIPDGQITVGQRIGSGSFGTVYKGK-W-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK-TRHVNILLFMGYST-APQLA   95 (289)
T ss_dssp             BCCTTSCEEEEEEEECSSEEEEEEE-S-SSEEEEEEESCSSCCHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEC-SSSCE
T ss_pred             ccCccceeeeeEecCCCCeEEEEEE-E-cCceEEEEEeccCCCHHHHHHHHHHHHHHHh-CCCCcEEEEEeecc-CCccE
Confidence            3444459999999999999987642 2 23488887642     233456788866554 59999999999764 55689


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||. ++|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|..++..+.+++
T Consensus        96 lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~  168 (289)
T 3og7_A           96 IVTQWCEGSSLYHHLHAS-----ETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLAT  168 (289)
T ss_dssp             EEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC---
T ss_pred             EEEEecCCCcHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecc
Confidence            9999998 5999999652     3568889999999999   899999999999999    78888887777666543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.52  E-value=3.7e-16  Score=161.27  Aligned_cols=136  Identities=21%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc-------eEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD-------FVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~-------~~yL  478 (549)
                      |++.+.||+|+||.||.+ ...+|+.||||++...  ......+|++.+.. ++||||+++++++....       ..++
T Consensus        25 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~-l~h~niv~~~~~~~~~~~~~~~~~~~~l  103 (360)
T 3e3p_A           25 FQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAV-LHHPNIVQLQSYFYTLGERDRRDIYLNV  103 (360)
T ss_dssp             EEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHH-HCCTTBCCEEEEEEEECSSCTTCEEEEE
T ss_pred             eEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHh-cCCCCcccHHHhhhccccccccceeEEE
Confidence            999999999999998884 6678999999977532  12234455544444 49999999999986433       3889


Q ss_pred             EecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eeccc--ceeEEEeecc----cccc-CCCCchhhhhhhh
Q 042769          479 SLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD--SVKVIIRDLS----LWKA-DGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH--~~~IIHRDLK----Ll~~-~G~p~~~l~~Lmr  547 (549)
                      |||||.|+|.+.+....  .....+++..+..++.|+   |.|||  +++|+|||||    |++. +|.+++..+++++
T Consensus       104 v~e~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~  180 (360)
T 3e3p_A          104 VMEYVPDTLHRCCRNYY--RRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAK  180 (360)
T ss_dssp             EEECCSCBHHHHHHHHH--TTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCB
T ss_pred             EeecccccHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCce
Confidence            99999988776665321  124568888899999998   88999  9999999999    7775 8888888777765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.52  E-value=7.6e-16  Score=173.75  Aligned_cols=136  Identities=24%  Similarity=0.286  Sum_probs=104.6

Q ss_pred             CccceeeeeecccccccCCceEEEe-eee-cCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          402 GRNVGKLFVSNTEIAKGSNGTVVYE-GIY-EGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       402 ~~~igk~y~~~~~LG~G~fG~V~~~-~~~-~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      +..+.+.|++.+.||+|+||.||.. +.. +|+.||||++..    .....+.+|+..+.. ++||||+++++++...+.
T Consensus        75 g~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~~  153 (681)
T 2pzi_A           75 GDIVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAE-VVHPSIVQIFNFVEHTDR  153 (681)
T ss_dssp             TCEETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGG-CCCTTBCCEEEEEEEECT
T ss_pred             CCEeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHh-cCCCCcCeEeeeEeecCC
Confidence            3445556999999999999998884 433 689999997753    223456788866654 499999999999987655


Q ss_pred             -----EEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhh
Q 042769          476 -----VYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLL  542 (549)
Q Consensus       476 -----~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l  542 (549)
                           .|||||||+| +|.+++..        .+++..++.++.|+   |.|||+++|||||||    |++. +.+++.+
T Consensus       154 ~~~~~~~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~-~~~kl~D  224 (681)
T 2pzi_A          154 HGDPVGYIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTE-EQLKLID  224 (681)
T ss_dssp             TSCEEEEEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECS-SCEEECC
T ss_pred             CCCceeEEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeC-CcEEEEe
Confidence                 7999999985 99887643        58899999999999   899999999999999    6665 4666666


Q ss_pred             hhhhh
Q 042769          543 LSLMR  547 (549)
Q Consensus       543 ~~Lmr  547 (549)
                      +++++
T Consensus       225 FG~a~  229 (681)
T 2pzi_A          225 LGAVS  229 (681)
T ss_dssp             CTTCE
T ss_pred             cccch
Confidence            66654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.52  E-value=8.1e-16  Score=156.11  Aligned_cols=132  Identities=23%  Similarity=0.268  Sum_probs=103.2

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-cc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-CS  486 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-Gs  486 (549)
                      |++.+.||+|+||.||.. ...++.||||++... ..+.+.+|+..+.++ +||||+++++++.+  ..|+|||||+ |+
T Consensus        10 ~~~~~~lg~G~~g~V~~~-~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l-~hp~iv~~~~~~~~--~~~lv~e~~~~~~   85 (307)
T 2eva_A           10 IEVEEVVGRGAFGVVCKA-KWRAKDVAIKQIESESERKAFIVELRQLSRV-NHPNIVKLYGACLN--PVCLVMEYAEGGS   85 (307)
T ss_dssp             EEEEEEEECCSSSEEEEE-EETTEEEEEEECSSTTHHHHHHHHHHHHHHC-CCTTBCCEEEBCTT--TTEEEEECCTTCB
T ss_pred             eeeeeEeecCCCceEEEE-EECCeeEEEEEecChhHHHHHHHHHHHHhcC-CCCCcCeEEEEEcC--CcEEEEEcCCCCC
Confidence            999999999999987664 456888999987643 234567888766555 99999999999874  4789999997 59


Q ss_pred             hhhhhhhcccCCcccccCchhhhHHhhhe---eecccc---eeEEEeecc----ccccCCC-Cchhhhhhhh
Q 042769          487 LDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS---VKVIIRDLS----LWKADGH-PSPLLLSLMR  547 (549)
Q Consensus       487 L~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~---~~IIHRDLK----Ll~~~G~-p~~~l~~Lmr  547 (549)
                      |.+++....   ....+++..++.++.|+   |+|||+   ++|+|||||    |++.+|. +++..+.+++
T Consensus        86 L~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~  154 (307)
T 2eva_A           86 LYNVLHGAE---PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC  154 (307)
T ss_dssp             HHHHHHCSS---SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--
T ss_pred             HHHHHhccC---CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccc
Confidence            999998622   12346778888888888   899999   899999999    7777776 5666666554

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.51  E-value=6.1e-16  Score=158.69  Aligned_cols=133  Identities=23%  Similarity=0.245  Sum_probs=105.1

Q ss_pred             eeeecccccccCCceEEEe-eeecCchh----HHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPV----AVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~V----AVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      .|++.+.||+|+||.||++ ...+++.+    |+|.+...    ....+.+|+..+.. ++||||+++++++.... .++
T Consensus        16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~-l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMAS-VDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTT-CCBTTBCCCCEEEESSS-EEE
T ss_pred             HceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHh-CCCCCeeEEEEEEecCC-ceE
Confidence            3999999999999998884 56677766    55544321    23356788866544 59999999999998765 778


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ++|++. |+|.+++...     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|++++..+.+++
T Consensus        94 v~~~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~  165 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREH-----KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             EECCCSSCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred             EEEecCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCccee
Confidence            888886 6999999872     3468899999999999   899999999999999    88899988887777664

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.51  E-value=6.7e-16  Score=158.23  Aligned_cols=122  Identities=15%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecC-chhHHHHHHH--HHhhhhHHHHHHHHhcCCCCC------eeEEeeeccCc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEG-RPVAVKRLVR--ALHDVAFKEIQNLIASDQHPN------IVRWYGVENDK  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g-~~VAVK~i~~--~~~~~~~~Ei~~L~~~l~HpN------IVrl~g~~~~~  473 (549)
                      .+.+.|++.+.||+|+||.||.+ ...++ +.||+|++..  ...+.+.+|+..+..+ +|++      ++.+++++...
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~~~~~~~~~~~~~~~~~~   94 (355)
T 2eu9_A           16 WLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKI-KEKDKENKFLCVLMSDWFNFH   94 (355)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHH-HHHCTTSCSCBCCEEEEEEET
T ss_pred             eecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHH-hhcCCCCceeEEEeeeeeeeC
Confidence            44555999999999999998874 44455 6899998753  2234566777665443 4444      99999999999


Q ss_pred             ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc
Q 042769          474 DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS  530 (549)
Q Consensus       474 ~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK  530 (549)
                      +..|||||||.|+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||
T Consensus        95 ~~~~lv~e~~~~~l~~~l~~~~----~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlk  150 (355)
T 2eu9_A           95 GHMCIAFELLGKNTFEFLKENN----FQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLK  150 (355)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT----TCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC
T ss_pred             CeEEEEEeccCCChHHHHHhcc----CCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            9999999999989888887622    3468999999999999   899999999999999

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.47  E-value=2.1e-15  Score=156.21  Aligned_cols=126  Identities=17%  Similarity=0.131  Sum_probs=100.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcC----------CCCCeeEEeeeccCc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASD----------QHPNIVRWYGVENDK  473 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l----------~HpNIVrl~g~~~~~  473 (549)
                      ..|.+.+.||+|+||.||.+ +..+++.||||++...  ....+.+|+..+..+.          .||||+++++++...
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~   98 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   98 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence            34999999999999998884 5678999999977532  2344567776554432          389999999998765


Q ss_pred             c----eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccce-eEEEeecc----ccccCC
Q 042769          474 D----FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSV-KVIIRDLS----LWKADG  536 (549)
Q Consensus       474 ~----~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~-~IIHRDLK----Ll~~~G  536 (549)
                      +    ..+++||++.++|.+++....    ...+++..++.++.|+   |+|||++ +|+|||||    |++.+|
T Consensus        99 ~~~~~~~~lv~e~~~~~L~~~~~~~~----~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~  169 (373)
T 1q8y_A           99 GPNGVHVVMVFEVLGENLLALIKKYE----HRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVD  169 (373)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTT----TSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEE
T ss_pred             CCCCceEEEEEecCCCCHHHHHHHhh----ccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccC
Confidence            4    799999999889999998733    3458899999999999   8999998 99999999    675444

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.46  E-value=5.7e-15  Score=166.08  Aligned_cols=134  Identities=20%  Similarity=0.238  Sum_probs=107.7

Q ss_pred             eeeeecccccccCCceEEEe-eee---cCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIY---EGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~---~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      +.|++.+.||+|+||.||.+ ...   .+..||+|++...    ..+.+.+|+..+..+ +||||+++++++.. +..|+
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~~~~~~-~~~~l  467 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVITE-NPVWI  467 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEE
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEec-CceEE
Confidence            44999999999999998874 322   2457899976532    234567888666554 99999999999854 56899


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||||. |+|.++++..     ...+++..++.++.|+   |.|||+++|+|||||    |++.+|++++.++++++
T Consensus       468 v~E~~~~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~  539 (656)
T 2j0j_A          468 IMELCTLGELRSFLQVR-----KFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSR  539 (656)
T ss_dssp             EEECCTTCBHHHHHHHT-----TTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCC
T ss_pred             EEEcCCCCcHHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCe
Confidence            999998 6999999862     2358888999999999   899999999999999    88999988888777765

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.45  E-value=3.6e-15  Score=167.18  Aligned_cols=130  Identities=21%  Similarity=0.283  Sum_probs=102.8

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC-----
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND-----  472 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-----  472 (549)
                      ..+++ |++.+.||+|+||.||.+ +..+|+.||||++..    ...+.+.+|+..+..+ +||||+++++++..     
T Consensus        11 ~~~gr-Y~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L-~HpnIV~l~~v~~~~~~~~   88 (676)
T 3qa8_A           11 QTCGP-WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL-NHPNVVSAREVPDGLQKLA   88 (676)
T ss_dssp             -------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHC-CBTTBCCEEECCTTTCCCC
T ss_pred             CCCCC-eEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhC-CCCCCCceeeeeccccccc
Confidence            34455 999999999999998874 667899999997653    2344577899766555 99999999999766     


Q ss_pred             -cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          473 -KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       473 -~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                       .+..|+|||||. |+|.+++....   ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.
T Consensus        89 ~~~~~~LVmEy~~ggsL~~~L~~~~---~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~  159 (676)
T 3qa8_A           89 PNDLPLLAMEYCEGGDLRKYLNQFE---NCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQ  159 (676)
T ss_dssp             TTSSCCCEEECCSSCBHHHHHHSSS---CTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSS
T ss_pred             CCCeEEEEEEeCCCCCHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCC
Confidence             677899999997 59999998732   23368999999999999   899999999999999    7776665

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.44  E-value=2.2e-15  Score=152.57  Aligned_cols=130  Identities=16%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||.||.+. . +..+|+|++...     ..+.+.+|+..+.. ++||||+++++++......+++||
T Consensus        33 ~~~~~~~~lg~G~~g~V~~~~-~-~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~iv~e  109 (319)
T 2y4i_B           33 EQLEIGELIGKGRFGQVYHGR-W-HGEVAIRLIDIERDNEDQLKAFKREVMAYRQ-TRHENVVLFMGACMSPPHLAIITS  109 (319)
T ss_dssp             SCEECCCBCCCSSSSEEEEEE-E-SSSEEEEECCCCSCCCCCCCCCCTTGGGGTT-CCCTTBCCCCEEEECSSCEEEECB
T ss_pred             HHeEEeeEeccCCceEEEEEE-E-cCeEEEEEeecCCCCHHHHHHHHHHHHHHhc-CCCCCEeEEEEEEecCCceEEEee
Confidence            349999999999999987642 2 235888877632     12345678865544 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||. ++|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++ +|.+++..+.+
T Consensus       110 ~~~~~~L~~~l~~~-----~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~  175 (319)
T 2y4i_B          110 LCKGRTLYSVVRDA-----KIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGL  175 (319)
T ss_dssp             CCCSEEHHHHTTSS-----CCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSC
T ss_pred             cccCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCC
Confidence            997 5999999762     2468999999999999   899999999999999    565 67777666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.43  E-value=4.8e-14  Score=145.90  Aligned_cols=127  Identities=15%  Similarity=0.210  Sum_probs=97.5

Q ss_pred             ceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhh-----------hhcCCC
Q 042769            2 SWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDY-----------VKTAPH   69 (549)
Q Consensus         2 ~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~-----------v~~sP~   69 (549)
                      +|++..+.++.+...         ...|++..+.++.++.+|.||++|. +|...|.+.....           +.++|+
T Consensus       166 ~W~~~~~~~~~~~~~---------~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~  236 (376)
T 3q7m_A          166 KWTVNLDMPSLSLRG---------ESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV  236 (376)
T ss_dssp             EEEEECCC-----CC---------CCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE
T ss_pred             EEEEeCCCCceeecC---------CCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE
Confidence            577777666641100         0126677777888999999999999 9999998876532           678998


Q ss_pred             cccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEE
Q 042769           70 ITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI  149 (549)
Q Consensus        70 ~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  149 (549)
                      +. +|.||+|+.++.++++|++||+++|++..+..                             .++...    .+.||+
T Consensus       237 ~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~-----------------------------~~~~~~----~~~l~~  282 (376)
T 3q7m_A          237 VV-NGVVFALAYNGNLTALDLRSGQIMWKRELGSV-----------------------------NDFIVD----GNRIYL  282 (376)
T ss_dssp             EE-TTEEEEECTTSCEEEEETTTCCEEEEECCCCE-----------------------------EEEEEE----TTEEEE
T ss_pred             EE-CCEEEEEecCcEEEEEECCCCcEEeeccCCCC-----------------------------CCceEE----CCEEEE
Confidence            88 89999999999999999999999999876430                             011111    279999


Q ss_pred             EcccceeecccCCCCCceeeee
Q 042769          150 TRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       150 ~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      +..++.|+|+|+++|+++|...
T Consensus       283 ~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EETTCCEEEEETTTCCEEEEEC
T ss_pred             EcCCCeEEEEECCCCcEEEeec
Confidence            9999999999999999999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.40  E-value=1.7e-14  Score=150.69  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=71.1

Q ss_pred             ccc-ccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCc
Q 042769           29 SEL-TNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        29 ~~~-~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      |.+ ..+.+|.|+.|+.||++|+ +|+.+|.+..+..+..+|   .++.||+|+.+++++++|++||+++|++.....  
T Consensus        87 p~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p---~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--  161 (369)
T 2hz6_A           87 PCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP---STSLLYLGRTEYTITMYDTKTRELRWNATYFDY--  161 (369)
T ss_dssp             SCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--
T ss_pred             ceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc---cCCEEEEEecCCEEEEEECCCCCEEEeEecccc--
Confidence            666 4556888999999999999 899999999988788888   489999999999999999999999999865321  


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhh
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                             ..+               . .+....   ..+.||++..|+.|+|+|+++|+++|++.++.-.
T Consensus       162 -------~~~---------------~-~~~~~~---~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv  205 (369)
T 2hz6_A          162 -------AAS---------------L-PEDDVD---YKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV  205 (369)
T ss_dssp             -------CCB---------------C-CCCCTT---CCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred             -------cCc---------------c-ccCCcc---ccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence                   000               0 000000   1168999999999999999999999999865433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.38  E-value=2e-13  Score=151.14  Aligned_cols=133  Identities=15%  Similarity=0.240  Sum_probs=104.1

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCC-cchhhhccc--cccccCCcchhh-----------hh
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGE-DWGLYAHGL--LGRMKLPQSIDD-----------YV   64 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~ly~~~~--~g~~~~~~~~~~-----------~v   64 (549)
                      +.|+|+++..  +.++              |.+..+.+|.++. ++.|||+|+  +|+++|.++++.           .+
T Consensus        42 ~~W~~~~~~~~g~~~~--------------P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~  107 (571)
T 2ad6_A           42 AAWSFSTGVLNGHEGA--------------PLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVV  107 (571)
T ss_dssp             EEEEEECSCCSCCCSC--------------CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSC
T ss_pred             EEEEEECCCCCCcccc--------------cEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccc
Confidence            3699998753  5566              8888888888888 899999997  899999998754           24


Q ss_pred             hcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCc
Q 042769           65 KTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEP  144 (549)
Q Consensus        65 ~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (549)
                      .++|++. +|.||+|+.++.+||||++||+++|++...+...        .               ....+++.+   ..
T Consensus       108 ~~~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~--------~---------------~~~~~~P~v---~~  160 (571)
T 2ad6_A          108 DRGLAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV--------G---------------STLTQAPFV---AK  160 (571)
T ss_dssp             CCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG--------T---------------CBCCSCCEE---ET
T ss_pred             ccccEEE-CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc--------c---------------ceeccCCEE---EC
Confidence            5778887 9999999999999999999999999998753100        0               011122222   12


Q ss_pred             eEEEEEcc------cceeecccCCCCCceeeeeeeh
Q 042769          145 YLLFITRT------DYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       145 ~~v~i~r~------d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      ++||++..      ++.|+|+|++||+++|++....
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~  196 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATG  196 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCC
Confidence            79999987      7999999999999999998764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.38  E-value=2e-13  Score=154.08  Aligned_cols=133  Identities=11%  Similarity=0.156  Sum_probs=105.4

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhc
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKT   66 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~   66 (549)
                      +.|+|++++.  +.++              |.+..+.+|.++.++.|||+|+ +|+++|.|++..           .+.+
T Consensus        57 ~~W~~~~~~~~g~~~~--------------P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  122 (677)
T 1kb0_A           57 LAWSYNLESTRGVEAT--------------PVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR  122 (677)
T ss_dssp             EEEEEECCCCSCCCCC--------------CEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC
T ss_pred             EEEEEECCCCCCceeC--------------CEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCC
Confidence            4699999865  6666              8888888888989999999999 999999998864           3557


Q ss_pred             CCCcccccceeecceeeEEEEEEccccceeeecCCC-CCCccccchhhhcccccccccchHHHHhhccCccccccccCce
Q 042769           67 APHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSP-HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPY  145 (549)
Q Consensus        67 sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (549)
                      +|++. +|.||+|+.++.+||||++||+++|++... +...        ..               ....++.+   ..+
T Consensus       123 ~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~--------~~---------------~~~~~p~v---~~~  175 (677)
T 1kb0_A          123 GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKG--------SL---------------TITGAPRV---FKG  175 (677)
T ss_dssp             CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCS--------SC---------------BCCSCCEE---ETT
T ss_pred             CceEE-CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCc--------Cc---------------ccccCcEE---ECC
Confidence            78887 999999999999999999999999999875 2100        00               00112222   127


Q ss_pred             EEEEEcc------cceeecccCCCCCceeeeeeeh
Q 042769          146 LLFITRT------DYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       146 ~v~i~r~------d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      .||++..      ++.|+|+|++||+++|++....
T Consensus       176 ~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~  210 (677)
T 1kb0_A          176 KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP  210 (677)
T ss_dssp             EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             EEEEEecccccCCCCEEEEEECCCCcEEEEeccCC
Confidence            9999986      7999999999999999998754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.36  E-value=3.9e-13  Score=135.17  Aligned_cols=151  Identities=19%  Similarity=0.318  Sum_probs=115.8

Q ss_pred             CceeccCCCccccccccceeeeecccccccc-ccceeeecCCcchhhhccccccccCCcchhhhhhcCCCcccccceeec
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASEL-TNSFFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLG   79 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg~v~~G   79 (549)
                      ++|++..++.+.++              |++ ..+.++.++.++.||++|.+|...|.+.++.-+..+|++..||.||+|
T Consensus        11 ~~W~~~~~~~~~~~--------------~~~d~~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~   76 (330)
T 3hxj_A           11 IKWEFLIGNSIDSS--------------PILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFG   76 (330)
T ss_dssp             -CCTTTSCEEECCC--------------CEECTTSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTEECCS
T ss_pred             EEEEEeCCCCcccC--------------ceEccCCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCcEEEe
Confidence            47999999998888              777 455688888999999999889999999998888899999889999999


Q ss_pred             ceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecc
Q 042769           80 SKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSF  159 (549)
Q Consensus        80 sk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~  159 (549)
                      +.+  +|++|+ +|+.+|++..+...                      .     ..+...    .+.||++..++.|+++
T Consensus        77 t~~--l~~~d~-~g~~~~~~~~~~~~----------------------~-----~~~~~~----~~~l~v~t~~~~l~~~  122 (330)
T 3hxj_A           77 SDK--VYAINP-DGTEKWRFDTKKAI----------------------V-----SDFTIF----EDILYVTSMDGHLYAI  122 (330)
T ss_dssp             SCE--EEEECC-CGGGGGGSCC--------------------------------CCEEEE----TTEEEEECTTSEEEEE
T ss_pred             cCc--EEEECC-CCcEEEEEECCCCc----------------------c-----cCceEE----CCEEEEEecCCEEEEE
Confidence            977  999998 99999998775310                      0     011111    2799999999999999


Q ss_pred             cCCCCCceeeeeeehhhhhhhccccCCcccccccccc-cccC
Q 042769          160 EPNSDNVSWSMTVAEIGYAFLCQDFENPFIGATMNTS-YELG  200 (549)
Q Consensus       160 d~~~g~~~Wn~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~  200 (549)
                      |++ |+.+|...........++.+.++..++++.+++ +.++
T Consensus       123 d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d  163 (330)
T 3hxj_A          123 NTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAIN  163 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEEC
T ss_pred             cCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEEC
Confidence            998 999999987655545556655555555444444 4443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.36  E-value=3.1e-13  Score=152.79  Aligned_cols=131  Identities=14%  Similarity=0.221  Sum_probs=102.5

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhc
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKT   66 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~   66 (549)
                      ++|+|+++..  +.++              |.+..+.+|.++.|+.|||+|+ +|+++|.|+...           .+.+
T Consensus        50 ~~W~~~~~~~~~~~~~--------------P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  115 (689)
T 1yiq_A           50 LAWSYKLDLDRGVEAT--------------PIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR  115 (689)
T ss_dssp             EEEEEECSSCSCCCCC--------------CEEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC
T ss_pred             EEEEEECCCCCCceec--------------CEEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCC
Confidence            3699999875  4555              8888888889999999999999 999999997743           2457


Q ss_pred             CCCcccccceeecceeeEEEEEEccccceeeecCCC-CCCccccchhhhcccccccccchHHHHhhccCccccccccCce
Q 042769           67 APHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSP-HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPY  145 (549)
Q Consensus        67 sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (549)
                      +|++. ||.||+|+.+++++|+|++||+++|++... +...        ..               ...+++.+.   .+
T Consensus       116 ~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~--------~~---------------~~~~sP~v~---~g  168 (689)
T 1yiq_A          116 GVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR--------SY---------------TITGAPRVV---NG  168 (689)
T ss_dssp             CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS--------CC---------------BCCSCCEEE---TT
T ss_pred             ccEEE-CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC--------Cc---------------cccCCcEEE---CC
Confidence            78887 999999999999999999999999999875 2100        00               001122221   27


Q ss_pred             EEEEEcc------cceeecccCCCCCceeeeee
Q 042769          146 LLFITRT------DYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       146 ~v~i~r~------d~~l~a~d~~~g~~~Wn~~~  172 (549)
                      .||++..      |+.|+|+|++||+++|++..
T Consensus       169 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  201 (689)
T 1yiq_A          169 KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT  201 (689)
T ss_dssp             EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence            8999874      78999999999999999975

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.33  E-value=5.9e-13  Score=148.02  Aligned_cols=135  Identities=16%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCC-cchhhhccc--cccccCCcchhh-----------hh
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGE-DWGLYAHGL--LGRMKLPQSIDD-----------YV   64 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~ly~~~~--~g~~~~~~~~~~-----------~v   64 (549)
                      +.|+|++|..  +.++              |.+..+.+|.++. ++.|||+|+  +|+++|.+++..           .+
T Consensus        42 ~~W~~~~g~~~g~~~t--------------P~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~  107 (599)
T 1w6s_A           42 PAWTFSTGLLNGHEGA--------------PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLV  107 (599)
T ss_dssp             EEEEEECSCCSCCCSC--------------CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSC
T ss_pred             EEEEEECCCCCCceec--------------cEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccccc
Confidence            3699998753  4455              8888888888887 899999998  899999998854           23


Q ss_pred             hcCCCcc-cccc----eeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccc
Q 042769           65 KTAPHIT-EEGA----VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAEL  139 (549)
Q Consensus        65 ~~sP~~~-~dg~----v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (549)
                      .++|+++ .||.    ||+|+.++.+||||++||+++|++...+..        ..               ....+++.+
T Consensus       108 ~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~--------~~---------------~~~~ssP~v  164 (599)
T 1w6s_A          108 NRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK--------VG---------------STLTIAPYV  164 (599)
T ss_dssp             CCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG--------GT---------------CBCCSCCEE
T ss_pred             ccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC--------cc---------------ceeecCCEE
Confidence            4667782 3888    999999999999999999999999875310        00               011222222


Q ss_pred             cccCceEEEEEcc------cceeecccCCCCCceeeeeeehh
Q 042769          140 QHKEPYLLFITRT------DYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       140 ~~~~~~~v~i~r~------d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      .   .++||++..      ++.|+|+|++||+++|++....-
T Consensus       165 ~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          165 V---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             E---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             E---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            1   279999985      89999999999999999988653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=6.4e-13  Score=149.66  Aligned_cols=132  Identities=11%  Similarity=0.186  Sum_probs=102.7

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----------hhhc
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----------YVKT   66 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----------~v~~   66 (549)
                      +.|+|+++..  +.++              |.+..+.+|.++.++.|||+|+ +|+++|.+++..           .+.+
T Consensus        46 ~~W~~~~~~~~~~~~~--------------P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  111 (668)
T 1kv9_A           46 LAWYMDLDNTRGLEAT--------------PLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR  111 (668)
T ss_dssp             EEEEEECSCCSCCCCC--------------CEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC
T ss_pred             eEEEEECCCCCCcccC--------------CEEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCcc
Confidence            3699998864  4555              8888888888889999999999 999999998743           2356


Q ss_pred             CCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceE
Q 042769           67 APHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYL  146 (549)
Q Consensus        67 sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (549)
                      +|++. +|.||+|+.++.+||+|++||+++|++...+...        .               .....++.+   ..+.
T Consensus       112 ~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~--------~---------------~~~~~~P~v---~~~~  164 (668)
T 1kv9_A          112 GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK--------P---------------YSITGAPRV---VKGK  164 (668)
T ss_dssp             CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS--------S---------------CBCCSCCEE---ETTE
T ss_pred             ceEEE-CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC--------c---------------ceecCCCEE---ECCE
Confidence            78887 9999999999999999999999999998753100        0               000112222   1278


Q ss_pred             EEEEcc------cceeecccCCCCCceeeeeee
Q 042769          147 LFITRT------DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       147 v~i~r~------d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      ||++..      ++.|+|+|++||+++|++.+.
T Consensus       165 v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  197 (668)
T 1kv9_A          165 VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (668)
T ss_dssp             EEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             EEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence            999875      589999999999999999763

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.30  E-value=1.5e-13  Score=151.09  Aligned_cols=119  Identities=17%  Similarity=0.133  Sum_probs=81.6

Q ss_pred             ecccccccCCceEEEeeeecCchhHHHHH----------HH-HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          411 SNTEIAKGSNGTVVYEGIYEGRPVAVKRL----------VR-ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       411 ~~~~LG~G~fG~V~~~~~~~g~~VAVK~i----------~~-~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      ..++||+|+||.||+. ...++.+|+|+.          .. ...+++.+|+..|..+ +||||+++..++...+..|||
T Consensus       340 ~~~~LG~G~fg~Vy~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          340 PEHLIGKGAEADIKRD-SYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV-KDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             --------CCEEEEEE-ECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG-GGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCEEeeCCCEEEEEE-EECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc-CCCCcCceEEEEEeCCccEEE
Confidence            3579999999998765 455666666632          11 1234567899777665 999999555454466677999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.+++..              +..++.|+   |+|||+++|+|||||    |++.  ++++.++.+.+
T Consensus       418 mE~~~ggsL~~~l~~--------------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~  477 (540)
T 3en9_A          418 MSYINGKLAKDVIED--------------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGK  477 (540)
T ss_dssp             EECCCSEEHHHHSTT--------------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCE
T ss_pred             EECCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCE
Confidence            99997 699998854              45677777   899999999999999    6666  77777777665

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.29  E-value=1.1e-13  Score=139.70  Aligned_cols=123  Identities=13%  Similarity=-0.037  Sum_probs=91.5

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHH---------------------HhhhhHHHHHHHHhcCCCCCeeE
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA---------------------LHDVAFKEIQNLIASDQHPNIVR  465 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~---------------------~~~~~~~Ei~~L~~~l~HpNIVr  465 (549)
                      ..|.+.+.||+|+||.||.+...+|+.||||.+...                     ....+.+|+..|..+ +|   ++
T Consensus        90 ~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l-~~---~~  165 (282)
T 1zar_A           90 KVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL-QG---LA  165 (282)
T ss_dssp             SCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT-TT---SS
T ss_pred             eEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc-cC---CC
Confidence            346777999999999988854467999999977421                     123467899777666 44   55


Q ss_pred             EeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       466 l~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +.+++. .+..|+|||||+| +|.+ +..            .....++.|+   |.|||+++|+|||||    |++ +|.
T Consensus       166 v~~~~~-~~~~~lvmE~~~g~~L~~-l~~------------~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~  230 (282)
T 1zar_A          166 VPKVYA-WEGNAVLMELIDAKELYR-VRV------------ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEG  230 (282)
T ss_dssp             SCCEEE-EETTEEEEECCCCEEGGG-CCC------------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTE
T ss_pred             cCeEEe-ccceEEEEEecCCCcHHH-cch------------hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCc
Confidence            555443 3567999999985 9988 422            2344677777   889999999999999    788 999


Q ss_pred             Cchhhhhhhhc
Q 042769          538 PSPLLLSLMRL  548 (549)
Q Consensus       538 p~~~l~~Lmrd  548 (549)
                      +++.++.+++.
T Consensus       231 vkl~DFG~a~~  241 (282)
T 1zar_A          231 IWIIDFPQSVE  241 (282)
T ss_dssp             EEECCCTTCEE
T ss_pred             EEEEECCCCeE
Confidence            98888887763

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.29  E-value=2e-13  Score=144.73  Aligned_cols=140  Identities=12%  Similarity=0.018  Sum_probs=98.8

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCC-CCe---------------e
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQH-PNI---------------V  464 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~H-pNI---------------V  464 (549)
                      .|...+.||+|+||.||++ +..+|+.||||++...      ..+.+.+|+..+. .++| +|.               +
T Consensus        79 ~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           79 TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLR-LLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGG-GSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHH-hhccCCCHHHHHHhcccccchhhc
Confidence            3888899999999998884 5778999999977621      1334567775544 4455 221               1


Q ss_pred             E------EeeeccC-----cceEEEEecccccchhhhhhhccc-CCcccccCchhhhHHhhhe---eecccceeEEEeec
Q 042769          465 R------WYGVEND-----KDFVYLSLERCTCSLDDLIQTYSD-SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDL  529 (549)
Q Consensus       465 r------l~g~~~~-----~~~~yLVmE~~~GsL~~~L~~~~~-~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDL  529 (549)
                      .      +..++..     ....+++|+++.|+|.++++.... ......+++..+..++.|+   |+|||+++||||||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDi  237 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYL  237 (413)
T ss_dssp             ECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence            1      1111111     224788999888999999863211 0123457788888888998   89999999999999


Q ss_pred             c----ccccCCCCchhhhhhhhc
Q 042769          530 S----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       530 K----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |    |++.+|.+++.++++++.
T Consensus       238 Kp~NILl~~~~~~kL~DFG~a~~  260 (413)
T 3dzo_A          238 RPVDIVLDQRGGVFLTGFEHLVR  260 (413)
T ss_dssp             CGGGEEECTTCCEEECCGGGCEE
T ss_pred             ccceEEEecCCeEEEEeccceee
Confidence            9    899999999988888653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.28  E-value=1.8e-12  Score=143.75  Aligned_cols=136  Identities=14%  Similarity=0.194  Sum_probs=99.0

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhhh---------hhcCCCc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDY---------VKTAPHI   70 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---------v~~sP~~   70 (549)
                      ++|+|++++.+....++.          |.+..+.+|.++.++.|||+|+ +|+++|.+.+..-         +.++|++
T Consensus        46 ~~W~~~~~~~~~~g~~~~----------P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~  115 (582)
T 1flg_A           46 PAWSYSFGDEKQRGQESQ----------AIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI  115 (582)
T ss_dssp             EEEEEECCTTCCSCCCCC----------CEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE
T ss_pred             EEEEEECCCccCCcceec----------cEEECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE
Confidence            379999987542111111          7787888777766455999999 9999999988653         3467888


Q ss_pred             ccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCce-----
Q 042769           71 TEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPY-----  145 (549)
Q Consensus        71 ~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  145 (549)
                      . +|.||+|+.++.+||||++||+++|++.......        .               ....+++.+.   .+     
T Consensus       116 ~-~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~--------~---------------~~~~~sP~v~---~~~~~G~  168 (582)
T 1flg_A          116 Y-GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA--------G---------------YTMTGAPTIV---KDGKTGK  168 (582)
T ss_dssp             E-TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG--------T---------------CBCCSCCEEE---ECTTTCC
T ss_pred             E-CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc--------C---------------cccccCCEEe---CCCcCCc
Confidence            7 9999999999999999999999999998753100        0               0001122211   13     


Q ss_pred             -EEEEEcc------cceeecccCCCCCceeeeeee
Q 042769          146 -LLFITRT------DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       146 -~v~i~r~------d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                       +||++..      ++.|+|+|++||+++|.....
T Consensus       169 ~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~  203 (582)
T 1flg_A          169 VLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             EEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             EEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence             8999875      899999999999999987553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=7e-12  Score=125.91  Aligned_cols=65  Identities=12%  Similarity=0.112  Sum_probs=35.6

Q ss_pred             eeeecCCcchhhhccccccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCC
Q 042769           35 FFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~  103 (549)
                      .++.++.+  ||++|++|...|.+..+..+.++|++. +|.||+|+.++.+|++|++ |+.+|++..+.
T Consensus        72 ~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~  136 (330)
T 3hxj_A           72 TIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKK  136 (330)
T ss_dssp             EECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             cEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC
Confidence            34555444  666666666666666655555666655 6666666666666666666 66666655544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.24  E-value=3.6e-12  Score=141.68  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=105.0

Q ss_pred             CceeccCCCccccc-cccceeeeecccccccc--ccce----eeecCCcchhhhccc-cccccCCcchhh-----hhhcC
Q 042769            1 VSWTFGTGTPIYSS-YQAPVQATVDQDNASEL--TNSF----FIDCGEDWGLYAHGL-LGRMKLPQSIDD-----YVKTA   67 (549)
Q Consensus         1 ~~W~f~tg~~i~ss-~~~~~~~~~~~~~~~~~--~~~~----~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----~v~~s   67 (549)
                      ++|+|..+.+.... +.+-..    ....+++  ..+.    +|.++.|+.|||+|+ +|++.|.+.+.+     .+.++
T Consensus        86 ~lW~~~~~~~~~~~~~~~~~~----~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss  161 (599)
T 1w6s_A           86 ILWQDKPKQNPAARAVACCDL----VNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA  161 (599)
T ss_dssp             EEEEECCCCCGGGGGGCSSCS----CCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC
T ss_pred             EEEEECCCCCccccccccccc----cccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC
Confidence            37999887664322 000000    0012555  4555    788889999999999 999999998876     68899


Q ss_pred             CCcccccceeecce------eeEEEEEEccccceeeecCCCCCCccc-cch------------hhhcccccccccchHHH
Q 042769           68 PHITEEGAVTLGSK------TTTVFVLEAKTGRLIRTYGSPHSSSTL-QNE------------EQKSASYKHDKVNNEQL  128 (549)
Q Consensus        68 P~~~~dg~v~~Gsk------~~~~~~vda~tG~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~  128 (549)
                      |++. +|.||+|+.      ++.++|+|++||+++|++.+....... ...            +......     . .+.
T Consensus       162 P~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw-----~-g~~  234 (599)
T 1w6s_A          162 PYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTW-----E-GDA  234 (599)
T ss_dssp             CEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTS-----S-TTG
T ss_pred             CEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccC-----C-Ccc
Confidence            9998 899999984      899999999999999999886421000 000            0000000     0 000


Q ss_pred             Hhhc----cCccccccccCceEEEEEcccc----------------eeecccCCCCCceeeeeeehh
Q 042769          129 VKSG----LTNTAELQHKEPYLLFITRTDY----------------TLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       129 ~~~~----~~~~~~~~~~~~~~v~i~r~d~----------------~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      +..+    +..+..+  .+.++||++..+.                .|+|+|++||+++|.+.....
T Consensus       235 ~~~gg~~~W~~~a~d--~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          235 WKIGGGTNWGWYAYD--PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GGGCCCCCCSCCEEE--TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             eecCCCccccceeEe--CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence            0000    0001010  1237999998764                899999999999999988754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.20  E-value=7.7e-12  Score=138.35  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=66.3

Q ss_pred             cccccceeeecCCcchhhhccc-cccccCCcchhh-----hhhcCCCcccccceeecce------eeEEEEEEcccccee
Q 042769           29 SELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----YVKTAPHITEEGAVTLGSK------TTTVFVLEAKTGRLI   96 (549)
Q Consensus        29 ~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----~v~~sP~~~~dg~v~~Gsk------~~~~~~vda~tG~~~   96 (549)
                      |++..+.+|.++.|+.|||+|+ +|+++|.+.+.+     .+.++|++. +|.||+|+.      ++.++|+|++||+++
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            6676777888889999999999 999999998876     688999998 899999987      789999999999999


Q ss_pred             eecCCCC
Q 042769           97 RTYGSPH  103 (549)
Q Consensus        97 ~~~~~~~  103 (549)
                      |++.+..
T Consensus       190 W~~~~~~  196 (571)
T 2ad6_A          190 WRAFATG  196 (571)
T ss_dssp             EEEESSS
T ss_pred             EEEccCC
Confidence            9998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.19  E-value=7.1e-12  Score=138.97  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=73.6

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh-----hhhcCCCccccc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-----YVKTAPHITEEG   74 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----~v~~sP~~~~dg   74 (549)
                      ++|+|..+.+..+......     ....+++..+.+|.++.|+.|||+|+ +|+++|.+.+..     .+.++|++. ++
T Consensus        90 ~~W~~~~~~~~~~~~~~~~-----~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~-~~  163 (582)
T 1flg_A           90 RLWTYNHRLPDDIRPCCDV-----VNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIV-KD  163 (582)
T ss_dssp             EEEEEECCCCTTCCCSSCS-----CCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEE-EC
T ss_pred             EEEEEcCCCCccccccccc-----CCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEe-CC
Confidence            3699888776532200000     00126666777888889999999999 999999998865     478899998 77


Q ss_pred             ------ceeecce------eeEEEEEEccccceeeecCCC
Q 042769           75 ------AVTLGSK------TTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        75 ------~v~~Gsk------~~~~~~vda~tG~~~~~~~~~  102 (549)
                            .||+|+.      ++.+||+|++||+++|++...
T Consensus       164 ~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~  203 (582)
T 1flg_A          164 GKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             TTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             CcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCC
Confidence                  9999974      899999999999999988654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.17  E-value=1.1e-12  Score=130.24  Aligned_cols=125  Identities=20%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             eeeeecccccccCCceEEEe-eeecCch--hHHHHHHHH---------------------------HhhhhHHHHHHHHh
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRP--VAVKRLVRA---------------------------LHDVAFKEIQNLIA  456 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~--VAVK~i~~~---------------------------~~~~~~~Ei~~L~~  456 (549)
                      ..|.+.+.||+|+||.||.+ ...+|+.  ||||+++..                           ....+.+|+..|..
T Consensus        47 ~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~  126 (258)
T 1zth_A           47 YITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER  126 (258)
T ss_dssp             SEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred             CchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence            34788899999999998885 4468988  999953210                           01245678877665


Q ss_pred             cCCCCC--eeEEeeeccCcceEEEEecccc--c----chhhhhhhcccCCcccccCchhhhHHhhhe---eeccc-ceeE
Q 042769          457 SDQHPN--IVRWYGVENDKDFVYLSLERCT--C----SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLD-SVKV  524 (549)
Q Consensus       457 ~l~HpN--IVrl~g~~~~~~~~yLVmE~~~--G----sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH-~~~I  524 (549)
                      + .|++  +..++++    ...+||||||.  |    +|.+++..         .++..+..++.|+   |.||| +++|
T Consensus       127 l-~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~---------~~~~~~~~i~~qi~~~l~~lH~~~gi  192 (258)
T 1zth_A          127 A-KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE---------LKELDVEGIFNDVVENVKRLYQEAEL  192 (258)
T ss_dssp             H-HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG---------GGGSCHHHHHHHHHHHHHHHHHTSCE
T ss_pred             H-HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc---------cChHHHHHHHHHHHHHHHHHHHHCCE
Confidence            5 5554  3333432    35689999995  4    45444322         3356777888888   88999 9999


Q ss_pred             EEeecc----ccccCCCCchhhhhhhh
Q 042769          525 IIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       525 IHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      +|||||    |++.  .+.+.++.+++
T Consensus       193 vHrDlkp~NILl~~--~~~liDFG~a~  217 (258)
T 1zth_A          193 VHADLSEYNIMYID--KVYFIDMGQAV  217 (258)
T ss_dssp             ECSSCSTTSEEESS--SEEECCCTTCE
T ss_pred             EeCCCCHHHEEEcC--cEEEEECcccc
Confidence            999999    6665  66666666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=1.8e-11  Score=138.14  Aligned_cols=165  Identities=14%  Similarity=0.184  Sum_probs=105.4

Q ss_pred             CceeccCCCccccc-cccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchh------hhhhcCCCccc
Q 042769            1 VSWTFGTGTPIYSS-YQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID------DYVKTAPHITE   72 (549)
Q Consensus         1 ~~W~f~tg~~i~ss-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~------~~v~~sP~~~~   72 (549)
                      ++|+|..+.+.... ++....    ....+++..+.+|.++.|+.|||+|+ +|++.|.+.+.      ..+.++|++. 
T Consensus        99 ~~W~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-  173 (677)
T 1kb0_A           99 RIWTYDPQIDRSTGFKGCCDV----VNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-  173 (677)
T ss_dssp             EEEEECCCCCGGGGGGSSSCS----CCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-
T ss_pred             EEEEEcCCCCccccccccccC----CCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-
Confidence            37999887654322 000000    00126666777888889999999999 99999999987      4688999998 


Q ss_pred             ccceeecce------eeEEEEEEccccceeeecCCCCCC--ccccchh-hhcccccccccchHHHHhh--c--cCccccc
Q 042769           73 EGAVTLGSK------TTTVFVLEAKTGRLIRTYGSPHSS--STLQNEE-QKSASYKHDKVNNEQLVKS--G--LTNTAEL  139 (549)
Q Consensus        73 dg~v~~Gsk------~~~~~~vda~tG~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--~~~~~~~  139 (549)
                      +|.||+|+.      ++.++|+|++||+++|++......  ..+.... ......-.   ...+.+..  +  ......+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~---~~g~~~~~~~g~~~w~~~~~  250 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD---PSGKWWEAGGGGTMWDSMTF  250 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC---GGGCHHHHCEECCCCSCEEE
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc---ccCceeEeCCCcccccceeE
Confidence            899999985      799999999999999999875421  0000000 00000000   00001110  0  0000010


Q ss_pred             cccCceEEEEEcccc-------------------eeecccCCCCCceeeeeeeh
Q 042769          140 QHKEPYLLFITRTDY-------------------TLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       140 ~~~~~~~v~i~r~d~-------------------~l~a~d~~~g~~~Wn~~~~~  174 (549)
                       +...++||++..+.                   .|+|+|++||+++|.+.+..
T Consensus       251 -d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~  303 (677)
T 1kb0_A          251 -DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP  303 (677)
T ss_dssp             -ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             -cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC
Confidence             01237999998875                   59999999999999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.16  E-value=1.2e-11  Score=139.88  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=93.8

Q ss_pred             cccccceeeecCCcchhhhccc-cccccCCcchh------hhhhcCCCcccccceeecc------eeeEEEEEEccccce
Q 042769           29 SELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID------DYVKTAPHITEEGAVTLGS------KTTTVFVLEAKTGRL   95 (549)
Q Consensus        29 ~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~------~~v~~sP~~~~dg~v~~Gs------k~~~~~~vda~tG~~   95 (549)
                      |++..+.+|.++.|+.|||+|+ +|++.|.+...      ..+.++|++. +|.||+|+      .++.++|+|++||++
T Consensus       117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            6666777888889999999999 99999999886      3678899998 99999997      379999999999999


Q ss_pred             eeecCCC-CCC-ccccchhh--hcccccccc----cchHHHHhhccCccccccccCceEEEEEcccce------------
Q 042769           96 IRTYGSP-HSS-STLQNEEQ--KSASYKHDK----VNNEQLVKSGLTNTAELQHKEPYLLFITRTDYT------------  155 (549)
Q Consensus        96 ~~~~~~~-~~~-~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~------------  155 (549)
                      +|++.+. ..+ .....+..  .......+.    ......+.+...++      +.++||++..++.            
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~------~~~~vy~~~~~g~~w~~~~~~~~~g  269 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP------ELNLLYIGVGNGSLWDPKWRSQAKG  269 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET------TTTEEEEECCCEESSCHHHHHTTCS
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC------CCCEEEEeCCCCCccccCCCCCCCC
Confidence            9999752 111 00000000  000000000    00000001111121      2379999998874            


Q ss_pred             -------eecccCCCCCceeeeeee
Q 042769          156 -------LQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       156 -------l~a~d~~~g~~~Wn~~~~  173 (549)
                             |+|+|++||+++|.+...
T Consensus       270 d~~y~~~v~AlD~~TG~~~W~~~~~  294 (689)
T 1yiq_A          270 DNLFLSSIVAVNADTGEYVWHYQTT  294 (689)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESS
T ss_pred             CceeeeeEEEEEccCCceeEeeecC
Confidence                   999999999999999875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1.7e-11  Score=138.03  Aligned_cols=164  Identities=17%  Similarity=0.240  Sum_probs=104.2

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchh-----hhhhcCCCccccc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID-----DYVKTAPHITEEG   74 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----~~v~~sP~~~~dg   74 (549)
                      ++|+|..+.+........ .  ......|++..+.+|.++.|+.|||+|+ +|+++|.+.+.     ..+.++|++. +|
T Consensus        88 ~~W~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~  163 (668)
T 1kv9_A           88 ELWRYDPEVAKVKARTSC-C--DAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG  163 (668)
T ss_dssp             EEEEECCCCCGGGGGGCT-T--CSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT
T ss_pred             hceEECCCCCcccccccc-c--cCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC
Confidence            379998876654321000 0  0001126666777888889999999999 99999999885     3578899998 89


Q ss_pred             ceeecce------eeEEEEEEccccceeeecCCCC-CCc-cccchhhh-cccccccccchHHHHhh---c-cCccccccc
Q 042769           75 AVTLGSK------TTTVFVLEAKTGRLIRTYGSPH-SSS-TLQNEEQK-SASYKHDKVNNEQLVKS---G-LTNTAELQH  141 (549)
Q Consensus        75 ~v~~Gsk------~~~~~~vda~tG~~~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~---~-~~~~~~~~~  141 (549)
                      .||+|+.      ++.++|+|++||+++|++.+.. .+. +...+... +....    ....++.-   + .-++..+ +
T Consensus       164 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~----~g~~~w~~~~gg~~w~~~a~-d  238 (668)
T 1kv9_A          164 KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW----QGDQYWKLGGGGTVWDSMAY-D  238 (668)
T ss_dssp             EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC----CSSCHHHHCEECCCCSCEEE-E
T ss_pred             EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC----CccceeeeCCCCccccceEE-c
Confidence            9999975      5899999999999999998632 111 00000000 00000    00001100   0 0001111 0


Q ss_pred             cCceEEEEEcccce-------------------eecccCCCCCceeeeeee
Q 042769          142 KEPYLLFITRTDYT-------------------LQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       142 ~~~~~v~i~r~d~~-------------------l~a~d~~~g~~~Wn~~~~  173 (549)
                      ...++||++..++.                   |+|+|++||+++|.+.+.
T Consensus       239 ~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~  289 (668)
T 1kv9_A          239 PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT  289 (668)
T ss_dssp             TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred             CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence            12379999998874                   999999999999999876

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=99.13  E-value=1.5e-11  Score=127.08  Aligned_cols=125  Identities=11%  Similarity=0.067  Sum_probs=85.7

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhh---hh-hcCCCcccccceeec--ceeeEEEEEEccccceeeecCCCCCC
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD---YV-KTAPHITEEGAVTLG--SKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~---~v-~~sP~~~~dg~v~~G--sk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      .+.+|+++.||.|||+|+ +|+++|.+++..   .+ .+.|....||.+|++  +.++.+||+|+.+|...|.++.+.-.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            346899999999999999 999999999871   12 122333346677776  68999999999999999988775300


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                             ..++ +..  ...+...|++.+.       ..++||+|+.+++|+|+|++||+++|.++.+.
T Consensus        90 -------~~SP-~~~--~~~pvv~~~~~~~-------~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           90 -------STSP-LHL--KTNIVVNDSGKIV-------EDEKVYTGSMRTIMYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             -------TTCS-EEE--ECC-----------------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred             -------eccc-ccc--CCCceeecccccc-------cCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence                   0000 000  0011111111000       13899999999999999999999999999874

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.05  E-value=1.5e-12  Score=136.96  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH-----------------h--------hhhHHHHHHHHhcCCCCC
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----------------H--------DVAFKEIQNLIASDQHPN  462 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----------------~--------~~~~~Ei~~L~~~l~HpN  462 (549)
                      .|.+...||+|+||.||.+...+|+.||||+++...                 .        -.+.+|+.+|.++ .+.+
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL-~~~g  174 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKAL-YEEG  174 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred             EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH-HhcC
Confidence            388899999999999988655679999999654210                 0        0112444444443 2222


Q ss_pred             e--eEEeeeccCcceEEEEeccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc
Q 042769          463 I--VRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW  532 (549)
Q Consensus       463 I--Vrl~g~~~~~~~~yLVmE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll  532 (549)
                      +  ...+++    ...+|||||++| .|.++..            ...+..++.|+   |.|||++||||||||    |+
T Consensus       175 v~vp~p~~~----~~~~LVME~i~G~~L~~l~~------------~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl  238 (397)
T 4gyi_A          175 FPVPEPIAQ----SRHTIVMSLVDALPMRQVSS------------VPDPASLYADLIALILRLAKHGLIHGDFNEFNILI  238 (397)
T ss_dssp             CSCCCEEEE----ETTEEEEECCSCEEGGGCCC------------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEE
T ss_pred             CCCCeeeec----cCceEEEEecCCccHhhhcc------------cHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEE
Confidence            1  112221    123699999987 7755432            22345667777   889999999999999    88


Q ss_pred             ccCCC
Q 042769          533 KADGH  537 (549)
Q Consensus       533 ~~~G~  537 (549)
                      +.+|.
T Consensus       239 ~~dgd  243 (397)
T 4gyi_A          239 REEKD  243 (397)
T ss_dssp             EEEEC
T ss_pred             eCCCC
Confidence            88774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.61  E-value=8.3e-09  Score=103.18  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             eeeecCCcchhhhccccccccCCcchhhhhhcCCCcccccc-eeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           35 FFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGA-VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      .++.+..++.++++|++|+..|.|..+....++|... +|. +++++..+.++++|++||+++|++...+..        
T Consensus       138 ~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--------  208 (276)
T 3no2_A          138 YLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--------  208 (276)
T ss_dssp             EEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--------
T ss_pred             EEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--------
Confidence            4678889999999999999999999987777888776 554 555666678999999999999999753200        


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccc-----------eeecccCCCCCceeeeeee
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY-----------TLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~-----------~l~a~d~~~g~~~Wn~~~~  173 (549)
                      + .          .+.+|.  ..+..   ..+.+||+..++           .++.+|+ +|++.|.+...
T Consensus       209 ~-~----------~l~~~~--~~~~~---~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~  262 (276)
T 3no2_A          209 G-V----------QLFFVA--QLFPL---QNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLNDK  262 (276)
T ss_dssp             S-C----------CCSEEE--EEEEC---TTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEECCT
T ss_pred             C-c----------cccccc--cceEc---CCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEecCc
Confidence            0 0          000111  11111   237889998543           5889998 99999998543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.50  E-value=5.4e-08  Score=97.27  Aligned_cols=113  Identities=10%  Similarity=0.101  Sum_probs=75.2

Q ss_pred             cccce-eeecCC-cchhhhccccccccCCcchhhhhhc---CC---Ccccccc-eeecceeeEEEEEEccccceeeecCC
Q 042769           31 LTNSF-FIDCGE-DWGLYAHGLLGRMKLPQSIDDYVKT---AP---HITEEGA-VTLGSKTTTVFVLEAKTGRLIRTYGS  101 (549)
Q Consensus        31 ~~~~~-~~~~~~-d~~ly~~~~~g~~~~~~~~~~~v~~---sP---~~~~dg~-v~~Gsk~~~~~~vda~tG~~~~~~~~  101 (549)
                      +.++. ++..+. ++.+++++++|+..|.|....-+..   .|   .+..||. +++.+.++.++++|++ |+++|++..
T Consensus        85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~  163 (276)
T 3no2_A           85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL  163 (276)
T ss_dssp             CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred             CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence            34444 444445 8899999999999888876432211   11   1233554 5556778999999999 999999988


Q ss_pred             CCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          102 PHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      +..+.                            +.+...  ..++++.+..++.|+++|++||+++|.+...+
T Consensus       164 ~~~~~----------------------------~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~  206 (276)
T 3no2_A          164 SGTPF----------------------------SSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVNAND  206 (276)
T ss_dssp             SSCCC----------------------------EEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred             CCCcc----------------------------ceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence            63111                            000110  01456666667789999999999999998554

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.68  E-value=6.6e-06  Score=80.57  Aligned_cols=81  Identities=9%  Similarity=-0.036  Sum_probs=60.8

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G  485 (549)
                      |.+...++.|+.+.||... ..++.+++|+...   .....+.+|+..+..+-.+.++.++++++...+..|+|||+++|
T Consensus        16 ~~~~~~~~g~s~~~v~~~~-~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G   94 (263)
T 3tm0_A           16 YRCVKDTEGMSPAKVYKLV-GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADG   94 (263)
T ss_dssp             SEEEECCSCCSSSEEEEEE-CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSS
T ss_pred             ceeEeeccCCCCCeEEEEE-CCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCC
Confidence            6777788888888877643 3367899997654   22335678887776664577888999998888899999999998


Q ss_pred             -chhhh
Q 042769          486 -SLDDL  490 (549)
Q Consensus       486 -sL~~~  490 (549)
                       +|.+.
T Consensus        95 ~~l~~~  100 (263)
T 3tm0_A           95 VLCSEE  100 (263)
T ss_dssp             EEHHHH
T ss_pred             eehhhc
Confidence             77664

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.36  E-value=1.5e-05  Score=77.19  Aligned_cols=80  Identities=13%  Similarity=-0.038  Sum_probs=52.1

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCC-CeeEEeeeccCcceEEEEeccccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHP-NIVRWYGVENDKDFVYLSLERCTC-S  486 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~Hp-NIVrl~g~~~~~~~~yLVmE~~~G-s  486 (549)
                      +.+....+.|..+.||.....+|+.+++|+..........+|+..+..+-.|. .+.+++++....+..++|||+++| +
T Consensus        22 ~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~  101 (264)
T 1nd4_A           22 YDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD  101 (264)
T ss_dssp             CEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             CceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcc
Confidence            33333334566677776555567788988654322234567887665553442 256788888877889999999987 6


Q ss_pred             hh
Q 042769          487 LD  488 (549)
Q Consensus       487 L~  488 (549)
                      |.
T Consensus       102 l~  103 (264)
T 1nd4_A          102 LL  103 (264)
T ss_dssp             TT
T ss_pred             cC
Confidence            64

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=96.64  E-value=0.00041  Score=71.18  Aligned_cols=76  Identities=11%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             cccccccCCceEEEeeeecCchhHHHHHH--HH----HhhhhHHHHHHHHhcCC-CCCeeEEeeeccCc---ceEEEEec
Q 042769          412 NTEIAKGSNGTVVYEGIYEGRPVAVKRLV--RA----LHDVAFKEIQNLIASDQ-HPNIVRWYGVENDK---DFVYLSLE  481 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~~~~~g~~VAVK~i~--~~----~~~~~~~Ei~~L~~~l~-HpNIVrl~g~~~~~---~~~yLVmE  481 (549)
                      .+.|+.|.++.||.... .+..+++|+..  ..    ......+|+..+..+-. +..+.+++.++.+.   +..|+|||
T Consensus        43 ~~~l~~G~sn~~y~v~~-~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVT-PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEEC-SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEE-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            45788999998776432 34567777654  22    12356678866655532 45678888888766   45899999


Q ss_pred             cccc-chh
Q 042769          482 RCTC-SLD  488 (549)
Q Consensus       482 ~~~G-sL~  488 (549)
                      +++| .+.
T Consensus       122 ~v~G~~l~  129 (359)
T 3dxp_A          122 FVSGRVLW  129 (359)
T ss_dssp             CCCCBCCC
T ss_pred             ecCCeecC
Confidence            9987 553

>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}

Probab=96.22  E-value=0.0082  Score=65.28  Aligned_cols=154  Identities=12%  Similarity=0.084  Sum_probs=92.6

Q ss_pred             ceeeecCCcchhhhccccccccCCcchhh--------------------hhhcCCCcccccceeecc------------e
Q 042769           34 SFFIDCGEDWGLYAHGLLGRMKLPQSIDD--------------------YVKTAPHITEEGAVTLGS------------K   81 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~~g~~~~~~~~~~--------------------~v~~sP~~~~dg~v~~Gs------------k   81 (549)
                      ..+|+|+.||-|||++++|.++|.|=..+                    +|..+|.+. |  +|+++            -
T Consensus        86 ~~VyvGaNDGmLHaF~a~G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~-D--v~~~g~wrtvLvggmg~G  162 (570)
T 3hx6_A           86 PRVYVGANDGMLHGFDTDGNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVA-D--AFFGGAWHTVLIGSLRAG  162 (570)
T ss_dssp             CEEEEECSSSCEEECCSSCCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEE-E--EEETTEEEEEEEEECTTS
T ss_pred             cEEEEECCCceEEEECCCCcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEE-E--EEeCCcceEEEEEecCCC
Confidence            46899999999999999999998875543                    345666654 3  23322            1


Q ss_pred             eeEEEEEEcc---ccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccc-cccCceEEEEEcc-----
Q 042769           82 TTTVFVLEAK---TGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAEL-QHKEPYLLFITRT-----  152 (549)
Q Consensus        82 ~~~~~~vda~---tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~i~r~-----  152 (549)
                      -..+||+|..   ..+++|.++..+...      -+   .             .+..|... .++..-.++||..     
T Consensus       163 G~~~yALDVT~P~~p~~LWe~~~~~~~~------LG---~-------------t~s~P~I~~~~~g~w~~vfG~GY~~~~  220 (570)
T 3hx6_A          163 GKGLFALDVTDPANIKLLWEIGVDQEPD------LG---Y-------------SFPKPTVARLHNGKWAVVTGNGYSSMN  220 (570)
T ss_dssp             CSEEEEEECSSGGGCEEEEEEETTTCTT------CC---B-------------CCSCCEEEECTTSSEEEEEECCBSCTT
T ss_pred             CcEEEEEECCCCCCCceeEEECCCCccc------cC---c-------------cccCCEEEEecCCCEEEEEccccCCCC
Confidence            2468999964   589999998543110      00   0             00111110 0011257788874     


Q ss_pred             -cceeecccCCCCCceeeeeeehhhhh------hhccccCCcccccccccccccCcccccCCCcccc
Q 042769          153 -DYTLQSFEPNSDNVSWSMTVAEIGYA------FLCQDFENPFIGATMNTSYELGPEIGHDFDLPFA  212 (549)
Q Consensus       153 -d~~l~a~d~~~g~~~Wn~~~~~~~a~------~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~p~~  212 (549)
                       ...||.+|+++|.+.|++++..-.+.      .-..+.+.+.+....|+++..|-.|.+|+...-.
T Consensus       221 ~~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~  287 (570)
T 3hx6_A          221 DKAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV  287 (570)
T ss_dssp             CCEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred             CccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence             45999999999999999987632110      0012333333333456665555668888766443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.17  E-value=0.0034  Score=62.34  Aligned_cols=110  Identities=14%  Similarity=0.162  Sum_probs=75.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhh---------hcCCCcccccc-eeecc--eeeEEEEEEccccceeeecCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYV---------KTAPHITEEGA-VTLGS--KTTTVFVLEAKTGRLIRTYGS  101 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v---------~~sP~~~~dg~-v~~Gs--k~~~~~~vda~tG~~~~~~~~  101 (549)
                      +|+.+..|+.++.+|. +|...+.+..+...         -...+++.||. +|+++  .++.++.+|.+||+.++++..
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence            3566777899999998 67765555543211         11234555764 88876  478999999999999998873


Q ss_pred             CC-CCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          102 PH-SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       102 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      .+ ....+                        ..++.      ...+|++..++.|+.+|..+|+..|.+..+.
T Consensus       183 ~~~~~~~~------------------------~~s~d------g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          183 TGKMSTGL------------------------ALDSE------GKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             CCTTCCCC------------------------EEETT------TTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             CCCccceE------------------------EECCC------CCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            22 11100                        01221      2589999999999999999999999988743

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.16  E-value=0.0031  Score=63.59  Aligned_cols=110  Identities=13%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCC---Ccccccceeecc-eeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAP---HITEEGAVTLGS-KTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP---~~~~dg~v~~Gs-k~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      +|+....++.++.+|. +|+....+..    ...|   +++.||.+|+.. .++.++++|++||+++++...+....   
T Consensus        56 lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~---  128 (328)
T 3dsm_A           56 GWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM---  128 (328)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT---
T ss_pred             EEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccc---
Confidence            3666667788999998 6666433321    1223   344589999998 88999999999999998877653000   


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEc--ccceeecccCCCCCceeeeeeeh
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR--TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r--~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                        ....               |.-+..  .    .+.||+..  .+..|+.+|+++|++.+.+.++.
T Consensus       129 --~~~~---------------p~~i~~--~----~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~  172 (328)
T 3dsm_A          129 --ESGS---------------TEQMVQ--Y----GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI  172 (328)
T ss_dssp             --TTCB---------------CCCEEE--E----TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS
T ss_pred             --cCCC---------------cceEEE--E----CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC
Confidence              0000               000011  1    26889986  37899999999999999887753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.85  E-value=0.006  Score=59.79  Aligned_cols=116  Identities=10%  Similarity=0.067  Sum_probs=75.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhh--hhcCCCccccc-ceee-cceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDY--VKTAPHITEEG-AVTL-GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~--v~~sP~~~~dg-~v~~-Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.++.|+.|+.+|. +|.....+..+.-  --...+++.|| .+|+ ++.++.++.+|+.||+.++++..+...    
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----   78 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE----   78 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT----
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc----
Confidence            5678889999999998 6766555554431  12445667788 5655 455789999999999999887654200    


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEc------------ccceeecccCCCCCceeeeeeeh
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR------------TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r------------~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                        .... .+.          . ...++.      ...||++.            .+..|+.+|..+|+..+.+..+.
T Consensus        79 --~~~~-~~~----------~-~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  135 (337)
T 1pby_B           79 --ERVK-SLF----------G-AALSPD------GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR  135 (337)
T ss_dssp             --EEEE-CTT----------C-EEECTT------SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS
T ss_pred             --cccc-ccc----------c-eEECCC------CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC
Confidence              0000 000          0 001211      14788886            57899999999999998887653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.63  E-value=0.0087  Score=59.30  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             CCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhccc
Q 042769           40 GEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSAS  117 (549)
Q Consensus        40 ~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~  117 (549)
                      ++|+.++.+|. +|.....+.....-....+++.|| .+|+++.++.++.+|..||+.++++..+....      ...  
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~--  232 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK------EHF--  232 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS------CCC--
T ss_pred             CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC------Ccc--
Confidence            45888999998 666554444111112344566676 49999999999999999999999887643100      000  


Q ss_pred             ccccccchHHHHhhccCccccccccCceEEEEEccc-ceeecccCCCCCceeeeeeeh
Q 042769          118 YKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTD-YTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d-~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      +..           -..++.      ...+|++..+ +.|+.+|.++|++.+.+.++.
T Consensus       233 ~~~-----------~~~s~d------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          233 FIN-----------ISLDTA------RQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             EEE-----------EEEETT------TTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             cce-----------EEECCC------CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            000           001111      1467887654 899999999999999888754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.60  E-value=0.0079  Score=58.92  Aligned_cols=107  Identities=12%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhh-----hhhcCCCccccc-ceeecc------------eeeEEEEEEcccccee
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDD-----YVKTAPHITEEG-AVTLGS------------KTTTVFVLEAKTGRLI   96 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~-----~v~~sP~~~~dg-~v~~Gs------------k~~~~~~vda~tG~~~   96 (549)
                      |+.++.++.|+.+|. +|.....+..+.     ---...++++|| .+|+++            .++.++++|.++|+.+
T Consensus        49 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  128 (337)
T 1pby_B           49 YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             EEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence            567778899999998 666544344321     011234566688 788886            4699999999999999


Q ss_pred             eecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769           97 RTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      +.+..+.....+.                        .++..      ..||++  ++.|+.+|.++|+....+..+.
T Consensus       129 ~~~~~~~~~~~~~------------------------~s~dg------~~l~~~--~~~i~~~d~~~~~~~~~~~~~~  174 (337)
T 1pby_B          129 KAFEAPRQITMLA------------------------WARDG------SKLYGL--GRDLHVMDPEAGTLVEDKPIQS  174 (337)
T ss_dssp             EEEECCSSCCCEE------------------------ECTTS------SCEEEE--SSSEEEEETTTTEEEEEECSTT
T ss_pred             EEEeCCCCcceeE------------------------ECCCC------CEEEEe--CCeEEEEECCCCcEeeeeeccc
Confidence            8877643111000                        12111      457887  6889999999999887776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.0077  Score=58.32  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      ...++.++.||.++..|. .....+.......| .+-+.++||.+++|+.+++++..|..+|+.+.++.......     
T Consensus       155 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-----  228 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQNDKVIKTFSGIHNDVV-RHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFV-----  228 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTEEEEEECSSCSSCE-EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-----
T ss_pred             CCEEEEEECCCCEEEEecCceEEEEeccCcccE-EEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceE-----
Confidence            345788889999998884 22222222122222 22334558889999999999999999999998886543110     


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                        ..                -..++       .+.++.+..|+.|+.+|.++|+..+.+....
T Consensus       229 --~~----------------~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  266 (313)
T 3odt_A          229 --YC----------------IKLLP-------NGDIVSCGEDRTVRIWSKENGSLKQVITLPA  266 (313)
T ss_dssp             --EE----------------EEECT-------TSCEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred             --EE----------------EEEec-------CCCEEEEecCCEEEEEECCCCceeEEEeccC
Confidence              00                00111       1368899999999999999999998886654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.29  E-value=0.012  Score=59.30  Aligned_cols=103  Identities=7%  Similarity=0.017  Sum_probs=67.0

Q ss_pred             eecCCcchhhhccc-cccccCCcchhh------hhhcCCCcccccceeecce--eeEEEEEEccccceeeecCCCCCCcc
Q 042769           37 IDCGEDWGLYAHGL-LGRMKLPQSIDD------YVKTAPHITEEGAVTLGSK--TTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        37 ~~~~~d~~ly~~~~-~g~~~~~~~~~~------~v~~sP~~~~dg~v~~Gsk--~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      +.+..++.++.+|. ++.....+..+.      .. ..-++ .+|.+|++..  +++++++|++||+++++...+..+..
T Consensus        99 v~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p-~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~  176 (328)
T 3dsm_A           99 VTQIWDYRIFIINPKTYEITGYIECPDMDMESGST-EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS  176 (328)
T ss_dssp             EEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC-CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC
T ss_pred             EEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc-ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc
Confidence            33336888888887 555543333322      11 01123 4889999974  89999999999999988766432111


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEccc-----------ceeecccCCCCCceeeeee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTD-----------YTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d-----------~~l~a~d~~~g~~~Wn~~~  172 (549)
                      +.                        .++       .+.+|++...           ..|+.+|++++++...+.+
T Consensus       177 i~------------------------~~~-------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          177 LV------------------------MDK-------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             CE------------------------ECT-------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred             eE------------------------EcC-------CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence            10                        111       1567777653           6899999999998877765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.26  E-value=0.011  Score=59.73  Aligned_cols=108  Identities=13%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-e-eecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-V-TLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v-~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      +|+.++.|+.++..|. .|.....+....-+ .+.+++.||. + +.|+.+++++.+|..||+.++++..+.....+   
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~---   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV---   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE---
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCCc-ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce---
Confidence            5788999999999998 67665555544433 4456677885 4 45679999999999999999888765311100   


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEE-EEcccceeecccCCCCCceeeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLF-ITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                           ..++..      ..|| .++.|+.|+.+|.++|+..+.+..+
T Consensus        80 ---------------------~~spdg------~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~  115 (391)
T 1l0q_A           80 ---------------------AVSPDG------KQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (391)
T ss_dssp             ---------------------EECTTS------SEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ---------------------EECCCC------CEEEEEECCCCEEEEEECCCCeEEEEEeCC
Confidence                                 012211      3454 4557799999999999998877654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.04  E-value=0.016  Score=57.86  Aligned_cols=105  Identities=12%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      ++.|+.||.++..+. .|.....+....-.-.+-++++|| .+..|+.|+++...|..+|+.+.++.......       
T Consensus       137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v-------  209 (321)
T 3ow8_A          137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI-------  209 (321)
T ss_dssp             EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC-------
T ss_pred             EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce-------
Confidence            678889999988887 665554444332212223344466 57789999999999999999998876543110       


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceee
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWS  169 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn  169 (549)
                      ..                -..+|.      ...|..|+.|++|+..|.++++..-.
T Consensus       210 ~~----------------l~~spd------~~~l~s~s~dg~i~iwd~~~~~~~~~  243 (321)
T 3ow8_A          210 RS----------------LTFSPD------SQLLVTASDDGYIKIYDVQHANLAGT  243 (321)
T ss_dssp             CE----------------EEECTT------SCEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             eE----------------EEEcCC------CCEEEEEcCCCeEEEEECCCcceeEE
Confidence            00                001221      25889999999999999888876543

>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}

Probab=94.78  E-value=0.012  Score=63.90  Aligned_cols=106  Identities=16%  Similarity=0.253  Sum_probs=69.0

Q ss_pred             cchhhhccc----cccccCCcchh---h--hhhcCCCccc----ccceeecce------eeEEEEEEccccceeeecCCC
Q 042769           42 DWGLYAHGL----LGRMKLPQSID---D--YVKTAPHITE----EGAVTLGSK------TTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        42 d~~ly~~~~----~g~~~~~~~~~---~--~v~~sP~~~~----dg~v~~Gsk------~~~~~~vda~tG~~~~~~~~~  102 (549)
                      ..++||+|-    ..+..|.|+..   +  +.-+.|.|..    .-++++|+-      ...+|+||++||.++|++..+
T Consensus       163 G~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~  242 (570)
T 3hx6_A          163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVT  242 (570)
T ss_dssp             CSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEEC
T ss_pred             CcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecC
Confidence            347999997    35567777732   2  3678888875    237788873      679999999999999999876


Q ss_pred             CCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCc
Q 042769          103 HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNV  166 (549)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~  166 (549)
                      +... .. +....+.++               +...  ++....+|+|-..++|+-||-.+...
T Consensus       243 ~~~~-~~-~Gls~~~~~---------------D~d~--Dg~~D~~YaGDl~GnlWRfDl~~~~~  287 (570)
T 3hx6_A          243 GRTG-VP-NGLSSPRLA---------------DNNS--DGVADYAYAGDLQGNLWRFDLIAGKV  287 (570)
T ss_dssp             CSTT-SC-CCEEEEEEE---------------CTTS--SSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred             CCCc-cC-CccccceEE---------------ecCC--CCceeEEEEEeCCCcEEEEEcCCCCc
Confidence            4210 00 001111111               1111  12236999999999999999866654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.38  E-value=0.019  Score=56.11  Aligned_cols=109  Identities=13%  Similarity=0.080  Sum_probs=70.4

Q ss_pred             eeeecCCcchhhhccc-cccccCCcch--hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSI--DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~--~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      .++.++.||.++..+. .+..+.....  ..---.+-++++|| .+++|+.+++++..|..+|+.+.++.......    
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i----  186 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA----  186 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----
T ss_pred             EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce----
Confidence            3678889999999887 4442222221  11111122233354 68899999999999999999998886543100    


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                         ..                ...++.      ...++.+..|+.|+.+|.++++....+..
T Consensus       187 ---~~----------------~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  223 (337)
T 1gxr_A          187 ---SC----------------IDISND------GTKLWTGGLDNTVRSWDLREGRQLQQHDF  223 (337)
T ss_dssp             ---EE----------------EEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             ---EE----------------EEECCC------CCEEEEEecCCcEEEEECCCCceEeeecC
Confidence               00                001221      25889999999999999999998877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.25  E-value=0.024  Score=58.84  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=69.4

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      ..++.|+.||.++..|. .+.....+....---.+-.. ++..+++|+.|+++...|..+|+.++++.......      
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v------  322 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT------  322 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE------
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE------
Confidence            34677888888888887 55443333321111111112 35578888888999999999998888776543110      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                            .             ...+      ..+.++.|..|+.|+.+|.++|+....+..
T Consensus       323 ------~-------------~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          323 ------S-------------GMEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             ------E-------------EEEE------ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             ------E-------------EEEE------eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence                  0             0111      125899999999999999999998887754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.18  E-value=0.019  Score=56.64  Aligned_cols=69  Identities=6%  Similarity=0.017  Sum_probs=50.1

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCcccccc-eeec-ceeeEEEEEEccccceeeecCCC
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEGA-VTLG-SKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg~-v~~G-sk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      ..|+.++.|+.|+.+|. +|.....+..+. .-..+++++.||. +|+. +.++.++.+|++||+.++++..+
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            34788889999999998 676655454443 1123456777884 6654 46889999999999999887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=94.05  E-value=0.025  Score=57.96  Aligned_cols=109  Identities=11%  Similarity=0.005  Sum_probs=71.2

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-ee-ecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VT-LGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~-~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.++.|+.++..|. .|.....+......-.+-+++.||. +| .|+.+++++.+|..+|+.++++........    
T Consensus       183 ~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~----  258 (433)
T 3bws_A          183 LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRG----  258 (433)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEE----
T ss_pred             EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceE----
Confidence            3678888999999887 5555444443222223334555663 54 555899999999999999988766431100    


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEc--------ccceeecccCCCCCceeeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR--------TDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r--------~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                          ...++.      ...|+++.        .|+.|+.+|..+|+..+.+...
T Consensus       259 --------------------~~~~~~------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~  302 (433)
T 3bws_A          259 --------------------LLLSKD------GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP  302 (433)
T ss_dssp             --------------------EEECTT------SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE
T ss_pred             --------------------EEEcCC------CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC
Confidence                                001221      14777777        5889999999999888776443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.96  E-value=0.028  Score=55.28  Aligned_cols=111  Identities=10%  Similarity=-0.017  Sum_probs=71.8

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-eeecce-eeEEEEEEccccce-eeecCCCCCCccc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTLGSK-TTTVFVLEAKTGRL-IRTYGSPHSSSTL  108 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk-~~~~~~vda~tG~~-~~~~~~~~~~~~~  108 (549)
                      .-.|+.++.|+.++.+|. +|.....+..+.--. ..+++.||. +|+.+. ++.++.+|.++|+. ..+......... 
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-   87 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA-   87 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC-
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc-
Confidence            335888899999999998 676644333322112 556777885 888776 88999999999998 655544321110 


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccc---eeecccCCCCCceeeeeee
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY---TLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~---~l~a~d~~~g~~~Wn~~~~  173 (549)
                            .  +              ..++.      ...||+...++   .|+.+|.++|+....+..+
T Consensus        88 ------~--~--------------~~s~d------g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  127 (331)
T 3u4y_A           88 ------D--V--------------DITPD------DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP  127 (331)
T ss_dssp             ------C--E--------------EECTT------SSEEEECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ------c--e--------------EECCC------CCEEEEecCCCCcccEEEEECCCCCeEEEEECC
Confidence                  0  0              01221      14677555553   8999999999887766553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.82  E-value=0.035  Score=55.98  Aligned_cols=122  Identities=7%  Similarity=0.039  Sum_probs=73.0

Q ss_pred             eeeecCCcchhhhccccccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           35 FFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      .++.|+.||.++..+.+|.....+....---.+-+.++|| .+++|+.+++++..|..+|+.+.++..............
T Consensus       122 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  201 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN  201 (425)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred             EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence            3788889999998887665544443322111222333355 588999999999999999999998877542100000000


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .    ..    ...    ...+..-.   ..+.++++..|+.|+.+|.++++....+.
T Consensus       202 ~----~~----~~~----~~~~~~~~---~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  244 (425)
T 1r5m_A          202 H----SG----DGS----LGVDVEWV---DDDKFVIPGPKGAIFVYQITEKTPTGKLI  244 (425)
T ss_dssp             ------------CC----CBSCCEEE---ETTEEEEECGGGCEEEEETTCSSCSEEEC
T ss_pred             c----cC----Ccc----eeeEEEEc---CCCEEEEEcCCCeEEEEEcCCCceeeeec
Confidence            0    00    000    00010000   12679999999999999999998887765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=93.80  E-value=0.039  Score=56.53  Aligned_cols=106  Identities=9%  Similarity=0.119  Sum_probs=69.6

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecc--------eeeEEEEEEccccceeeecCCCCCC
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGS--------KTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gs--------k~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      |+.++.|+.++..|. .|.....+.....+ .+.+++.|| .+++++        .++.++..|..+|+.++....++..
T Consensus       227 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  305 (433)
T 3bws_A          227 YCSNWISEDISVIDRKTKLEIRKTDKIGLP-RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK  305 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECCCCSEE-EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred             EEEecCCCcEEEEECCCCcEEEEecCCCCc-eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence            466778999999997 66654444433322 233444576 788887        4889999999999998776433210


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEE-EcccceeecccCCCCCceeeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI-TRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i-~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                      ..+                        ..++..      ..+|+ +..|+.|+.+|.++|+..+.+..
T Consensus       306 ~~~------------------------~~~~~g------~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  343 (433)
T 3bws_A          306 RHI------------------------VSGNTE------NKIYVSDMCCSKIEVYDLKEKKVQKSIPV  343 (433)
T ss_dssp             EEE------------------------EECSST------TEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceE------------------------EECCCC------CEEEEEecCCCEEEEEECCCCcEEEEecC
Confidence            000                        011111      24544 58999999999999998887754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.79  E-value=0.029  Score=56.55  Aligned_cols=107  Identities=11%  Similarity=0.055  Sum_probs=75.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhh---------------hcCCCcccccceeecceeeEEEEEEccccceeeec
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYV---------------KTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTY   99 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v---------------~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~   99 (549)
                      ++.++.||.++..+. +|.....+.....-               ..+-+.++++.+++|+.++.++..|..+|+.+.++
T Consensus       164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~  243 (425)
T 1r5m_A          164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKL  243 (425)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEE
T ss_pred             EEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeee
Confidence            678889999999887 66554444443322               33444566899999999999999999999998887


Q ss_pred             CCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          100 GSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .......       ..                ...++.      ...|+.+..|+.|+.+|.++++....+.
T Consensus       244 ~~~~~~i-------~~----------------~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          244 IGHHGPI-------SV----------------LEFNDT------NKLLLSASDDGTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             CCCSSCE-------EE----------------EEEETT------TTEEEEEETTSCEEEECSSSBSCSEEEC
T ss_pred             ccCCCce-------EE----------------EEECCC------CCEEEEEcCCCEEEEEECCCCccceEec
Confidence            6543100       00                001111      1488999999999999999998887774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.77  E-value=0.031  Score=56.43  Aligned_cols=108  Identities=13%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ce-eecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AV-TLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v-~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      |+.++.|+.++..|. .|.....+.....+ .+.+++.|| .+ ..++.+++++..|..+|+.+.++........+    
T Consensus       131 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~----  205 (391)
T 1l0q_A          131 YVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGI----  205 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEE----
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEecCCCc-ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccce----
Confidence            578888999999997 66654444443333 344566677 35 45788899999999999988777553211000    


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEc---ccceeecccCCCCCceeeeeeeh
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR---TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r---~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                                          ..++.      ...||++.   .|+.|+.+|.++|+....+..+.
T Consensus       206 --------------------~~~~~------g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  244 (391)
T 1l0q_A          206 --------------------AVNPE------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP  244 (391)
T ss_dssp             --------------------EECTT------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS
T ss_pred             --------------------EECCC------CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC
Confidence                                01221      15788887   68999999999999888776643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=93.72  E-value=0.033  Score=57.83  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=73.5

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCcccc-cceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEE-GAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~d-g~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.|+.||.++..|. .+.....+.... .|. +-+.+.| ..++.|+.|+++...|..+|+.+.++.......     
T Consensus       282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-----  355 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV-----  355 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE-----
Confidence            4788899999999997 555443333211 111 1122334 368999999999999999999999887643110     


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                            .+. .+   ++..|+.+..|+.|+..|.+++...+.+...
T Consensus       356 ----------------------~~~-~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          356 ----------------------GLL-RL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             ----------------------EEE-EE---CSSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred             ----------------------EEE-EE---cCCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence                                  000 01   1268999999999999999999988877543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=93.58  E-value=0.021  Score=55.14  Aligned_cols=105  Identities=13%  Similarity=0.100  Sum_probs=70.2

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQK  114 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~  114 (549)
                      ++.|+.||.++..|. +|.....+....---.+-+.++||.++.|+.|++++..|..+|+.+.++..+....        
T Consensus       198 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--------  269 (313)
T 3odt_A          198 FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI--------  269 (313)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCE--------
T ss_pred             EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceE--------
Confidence            788899999999998 66654444432211222335558899999999999999999999999887654110        


Q ss_pred             cccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          115 SASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                          ..           ...++       .+.++.+..|+.|+..|.++++.....
T Consensus       270 ----~~-----------~~~~~-------~~~~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          270 ----WS-----------VDCMS-------NGDIIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             ----EE-----------EEECT-------TSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred             ----EE-----------EEEcc-------CCCEEEEeCCCcEEEEeCCCCceeehh
Confidence                00           00111       134677889999998888777665444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=93.48  E-value=0.034  Score=60.42  Aligned_cols=108  Identities=4%  Similarity=-0.035  Sum_probs=76.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEc--cccceeeecCCCCCCccccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEA--KTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda--~tG~~~~~~~~~~~~~~~~~  110 (549)
                      +|+.++.|+.+..+|. .|...-.+.++..++ +-+++.|| .+|+++.++++.++|.  +||+.+.++.....+..   
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~---  226 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS---  226 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE---
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcce---
Confidence            3778889999999998 676544444332222 22345577 7999999999999999  99999887765321100   


Q ss_pred             hhhhcccccccccchHHHHhhccCcc----ccccccCceEEEEEc-ccceeecccCCCCCceeeeeee
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNT----AELQHKEPYLLFITR-TDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~i~r-~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                             +              ..++    ..      ..+|++. .+.+|..+|..+++++..+.+.
T Consensus       227 -------v--------------a~sp~~~~dg------~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          227 -------V--------------ESSKFKGYED------RYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             -------E--------------EECCSTTCTT------TEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             -------E--------------EeCCCcCCCC------CEEEEEEccCCeEEEEeccccccceeeccc
Confidence                   0              0122    11      5889988 4899999999999999888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.31  E-value=0.038  Score=53.83  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=67.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      .++.++.||.++..|. ++.....+....---.+-++++|| .+++|+.+++++..|.++|+.+.++........+    
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~----  230 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL----  230 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE----
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEE----
Confidence            3688889999999887 555433333211111112233354 7889999999999999999999887654311100    


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                                          ..++.      ...++++..|+.|+.+|.++++..
T Consensus       231 --------------------~~s~~------~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          231 --------------------GYCPT------GEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             --------------------EECTT------SSEEEEEETTSCEEEEETTSSCEE
T ss_pred             --------------------EECCC------CCEEEEEcCCCcEEEEECCCCCeE
Confidence                                01221      258899999999999999877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=93.26  E-value=0.041  Score=56.97  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=74.9

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      ..++.|+.||.++..|. +|.....+.... .| .+-..+ +..++.|+.|+++...|..+|+.+.++.......     
T Consensus       130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-----  202 (445)
T 2ovr_B          130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-WSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-----  202 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEECCCCSSCE-EEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----
T ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCE-EEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE-----
Confidence            34788999999999998 676544443221 12 222334 6689999999999999999999998887543110     


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                                            .+. .+   .++.++.|+.|++|+..|..+|+..+.+.
T Consensus       203 ----------------------~~~-~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  236 (445)
T 2ovr_B          203 ----------------------RCM-HL---HEKRVVSGSRDATLRVWDIETGQCLHVLM  236 (445)
T ss_dssp             ----------------------EEE-EE---ETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred             ----------------------EEE-Ee---cCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence                                  000 00   12579999999999999999999888775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.19  E-value=0.054  Score=54.49  Aligned_cols=107  Identities=20%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             eeecCCcchhhhccc-c------ccccCCcchhhhh-------------hcCCCcccccceeecceeeEEEEEEccccce
Q 042769           36 FIDCGEDWGLYAHGL-L------GRMKLPQSIDDYV-------------KTAPHITEEGAVTLGSKTTTVFVLEAKTGRL   95 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~------g~~~~~~~~~~~v-------------~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~   95 (549)
                      ++.|+.||.++..|. .      +.. +.|....-+             -.+-++++||.+++|+.+++++..|..+|+.
T Consensus       141 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          141 LVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEE
T ss_pred             EEEEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCce
Confidence            778889999999887 4      333 222211111             1122344466889999999999999999999


Q ss_pred             eeecCC---C---CCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEccc---ceeecccCCCCCc
Q 042769           96 IRTYGS---P---HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTD---YTLQSFEPNSDNV  166 (549)
Q Consensus        96 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d---~~l~a~d~~~g~~  166 (549)
                      ++++..   .   ...            +..           ...++.      ...|+.+..|   +.|+.+|.++++.
T Consensus       220 ~~~~~~~~~h~~~~~~------------i~~-----------i~~~~~------~~~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          220 LYNFESQHSMINNSNS------------IRS-----------VKFSPQ------GSLLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             EEEEECCC---CCCCC------------EEE-----------EEECSS------TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             eEEEeccccccccCCc------------cce-----------EEECCC------CCEEEEEecCCCCceEEEEECCCCcc
Confidence            998876   2   100            000           001221      2588999999   9999999999998


Q ss_pred             eeeeee
Q 042769          167 SWSMTV  172 (549)
Q Consensus       167 ~Wn~~~  172 (549)
                      ...+..
T Consensus       271 ~~~~~~  276 (397)
T 1sq9_A          271 IGSLSV  276 (397)
T ss_dssp             EEEECB
T ss_pred             cceecc
Confidence            877754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=92.95  E-value=0.051  Score=59.59  Aligned_cols=112  Identities=7%  Similarity=-0.059  Sum_probs=78.8

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEcc--ccceeeecCCCCCCccc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAK--TGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~--tG~~~~~~~~~~~~~~~  108 (549)
                      +-+|+...+|+.++.+|. +|+....+.++..++ ..+++.|| .+|+++.++.++++|..  |++++.+...+..+.  
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~--  243 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR--  243 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE--
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc--
Confidence            345788889999999998 666654445544333 34556587 58999999999999995  999998876643110  


Q ss_pred             cchhhhcccccccccchHHHHhhccCcc---ccccccCceEEEEEcc-cceeecccCCCCCceeeeeeeh
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNT---AELQHKEPYLLFITRT-DYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~i~r~-d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                           .   +             + .++   +.     ...+|++.. +..|..+|..+++++..+.++.
T Consensus       244 -----~---i-------------a-~s~~~~pD-----Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~  286 (567)
T 1qks_A          244 -----S---I-------------E-TSKMEGWE-----DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRG  286 (567)
T ss_dssp             -----E---E-------------E-ECCSTTCT-----TTEEEEEEEETTEEEEEETTTCCEEEEEECCE
T ss_pred             -----e---e-------------E-EccccCCC-----CCEEEEEEccCCeEEEEECCCCcEEEEEeccc
Confidence                 0   0             0 121   01     147787764 5899999999999999998865

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.80  E-value=0.11  Score=52.62  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCC-cccc--
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS-STLQ--  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~-~~~~--  109 (549)
                      .++.|+.||.++..|. +|.....+....---.+-++++|| .++.|+.|+++...|..+|+.++++...... ..+.  
T Consensus       153 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~  232 (420)
T 3vl1_A          153 ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI  232 (420)
T ss_dssp             EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence            4788999999999997 665544443222111222334455 5888999999999999999999998764311 0000  


Q ss_pred             ---chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          110 ---NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       110 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                         .+....  +..   .....+.....++      ....|+.|..|+.|+.+|.++++....+..
T Consensus       233 ~~~~~~~~~--~~~---~~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  287 (420)
T 3vl1_A          233 ALFVGTDRQ--LHE---ISTSKKNNLEFGT------YGKYVIAGHVSGVITVHNVFSKEQTIQLPS  287 (420)
T ss_dssp             EEEECCCSS--CGG---GCCCCCCTTCSSC------TTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEecCCcce--eee---cccCcccceEEcC------CCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence               000000  000   0000000001122      226899999999999999999988877644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=92.59  E-value=0.13  Score=50.80  Aligned_cols=105  Identities=12%  Similarity=-0.035  Sum_probs=72.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhh-hhhcCCCcccccceeecc-eeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEGAVTLGS-KTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg~v~~Gs-k~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      |...+++|.|..+|. +|+..-.. ++. +....=++. ++.||+.. +++.+|++|++|++++.++..+...-      
T Consensus        68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw------  139 (268)
T 3nok_A           68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW------  139 (268)
T ss_dssp             EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC------
T ss_pred             EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee------
Confidence            667777888888888 67663332 322 111001223 55788875 46899999999999999998753111      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                                         + +++..      ..||+...+..|+-+||+|.++.=++.++.
T Consensus       140 -------------------G-Lt~Dg------~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~  175 (268)
T 3nok_A          140 -------------------G-LCYWN------GKLVRSDGGTMLTFHEPDGFALVGAVQVKL  175 (268)
T ss_dssp             -------------------C-EEEET------TEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             -------------------E-EecCC------CEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence                               0 11111      589999889999999999999998888875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.55  E-value=0.039  Score=55.96  Aligned_cols=110  Identities=9%  Similarity=0.036  Sum_probs=67.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchh-hhhhcCCCccccc--ceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSID-DYVKTAPHITEEG--AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~-~~v~~sP~~~~dg--~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      ++.|+.||.+...|. +|...-.|... +.|.+ =+++.||  .+..||.|+++..-|..+|+.+.++........+   
T Consensus       142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~-~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---  217 (344)
T 4gqb_B          142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC-VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP---  217 (344)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEE-EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCE---
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE-EEecCCCCCceeeeccccccccccccccceeeeeecceeeccc---
Confidence            788899999998887 66554333321 11211 1122344  4667999999999999999998877554210000   


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                        ..                ...++..     ..++..|..|++|+..|.++|+....+..
T Consensus       218 --~~----------------~~~~p~~-----~~~l~sg~~dg~v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          218 --TS----------------LAWHPQQ-----SEVFVFGDENGTVSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             --EE----------------EEECSSC-----TTEEEEEETTSEEEEEESCC--CCEEEEC
T ss_pred             --ee----------------eeecCCC-----CcceEEeccCCcEEEEECCCCcEEEEEcC
Confidence              00                0011111     24778899999999999999998877653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.38  E-value=0.091  Score=52.31  Aligned_cols=108  Identities=9%  Similarity=0.023  Sum_probs=72.3

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      .++.|+.|+.+...|. +|.....+.....-..+-+.++|| .+..|+.++++...|..+|+..+++.......      
T Consensus        94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v------  167 (321)
T 3ow8_A           94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI------  167 (321)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE------
T ss_pred             EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE------
Confidence            3678899999998887 665533333322212223344455 57789999999999999999998876643100      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                       ..                ...+|.      ...|..|..|+.|+.+|.++|+..-.+.
T Consensus       168 -~~----------------~~~spd------g~~lasg~~dg~i~iwd~~~~~~~~~~~  203 (321)
T 3ow8_A          168 -LS----------------IAYSPD------GKYLASGAIDGIINIFDIATGKLLHTLE  203 (321)
T ss_dssp             -EE----------------EEECTT------SSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             -EE----------------EEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence             00                001221      2588999999999999999998876654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.28  E-value=0.098  Score=54.07  Aligned_cols=106  Identities=12%  Similarity=0.131  Sum_probs=72.0

Q ss_pred             ccceeeecCCcchhhhccc-cccccC---Ccch-hhhh-hcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCC
Q 042769           32 TNSFFIDCGEDWGLYAHGL-LGRMKL---PQSI-DDYV-KTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        32 ~~~~~~~~~~d~~ly~~~~-~g~~~~---~~~~-~~~v-~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      .++.++.|+.||.++..|. .+....   .+.. ...| ..++   ++..+++|+.|+++...|..+|+.+.++......
T Consensus       222 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  298 (435)
T 1p22_A          222 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  298 (435)
T ss_dssp             CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence            3556899999999999987 443221   0110 1111 1111   3667899999999999999999999888654310


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .                           .+. .+   ....++.|..|+.|+.+|.++|+....+.
T Consensus       299 v---------------------------~~~-~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          299 I---------------------------ACL-QY---RDRLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             E---------------------------EEE-EE---ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             E---------------------------EEE-Ee---CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence            0                           000 00   12589999999999999999999887765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=92.06  E-value=0.076  Score=55.04  Aligned_cols=111  Identities=17%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      ...++.|+.||.+...|. +|.....+....---.+=+.++|+.+..|+.|+++..-|..||+.+.++.......     
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v-----  206 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-----  206 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-----
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCcc-----
Confidence            445788999999999997 66655444421111111123457899999999999999999999998887543110     


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                        ..                -...+.    .....++.++.|++|+..|..++......
T Consensus       207 --~~----------------l~~~~~----~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  243 (464)
T 3v7d_B          207 --RC----------------LDIVEY----KNIKYIVTGSRDNTLHVWKLPKESSVPDH  243 (464)
T ss_dssp             --EE----------------EEEEES----SSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred             --EE----------------EEEecC----CCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence              00                001110    11268999999999999998887765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.03  E-value=0.16  Score=48.94  Aligned_cols=108  Identities=9%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             eeecCCcchhhhccccccccCCcchhhh--hhcCCCcccccceeecc-eeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGLLGRMKLPQSIDDY--VKTAPHITEEGAVTLGS-KTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~~g~~~~~~~~~~~--v~~sP~~~~dg~v~~Gs-k~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      |+.+..++.++..+.+|.....+....-  .-..-++++||.+|++. .++.++.+|+ +|+.++++...+...      
T Consensus       135 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~------  207 (286)
T 1q7f_A          135 IVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITN------  207 (286)
T ss_dssp             EEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSC------
T ss_pred             EEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccC------
Confidence            4444556677777766654433322110  11223456688899874 5788999997 677777775532000      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcc-cc-eeecccCCCCCceeeeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT-DY-TLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~-d~-~l~a~d~~~g~~~Wn~~~~  173 (549)
                       ...++.              .+       ..+.||++.. +. .|+.+|+ +|+..+.+...
T Consensus       208 -~p~~i~--------------~d-------~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          208 -YPIGVG--------------IN-------SNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             -SEEEEE--------------EC-------TTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             -CCcEEE--------------EC-------CCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence             000000              11       1256777664 44 8999997 78888877654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=91.65  E-value=0.095  Score=51.54  Aligned_cols=107  Identities=7%  Similarity=0.056  Sum_probs=67.3

Q ss_pred             eeeecCCcchhhhccc-c-ccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-L-GRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~-g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.++.||.++..|. . +.....+....---.+-++++|| .+++|+.+++++..|..+|+.+.++........+.  
T Consensus       189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~--  266 (369)
T 3zwl_B          189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV--  266 (369)
T ss_dssp             EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE--
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEE--
Confidence            3678889999999887 4 33333333221111122233355 57889999999999999999998887543111000  


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccc--------------eeecccCCCCCceeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY--------------TLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~--------------~l~a~d~~~g~~~Wn~~  171 (549)
                                            .++.      ...++++..++              .++.+|..+++....+.
T Consensus       267 ----------------------~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  312 (369)
T 3zwl_B          267 ----------------------ITPL------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ  312 (369)
T ss_dssp             ----------------------ECSS------SSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred             ----------------------ecCC------CceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence                                  1221      15677777776              67778877887776664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.48  E-value=0.13  Score=51.92  Aligned_cols=110  Identities=11%  Similarity=0.129  Sum_probs=70.3

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcch-----hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCc
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSI-----DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~-----~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      +.++.|++||.+...|. +|.....+..     .+.|.+ =++++|| .+..|+.|+++..-|..||+.+.++.......
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~-v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVST-VSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEE-EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            44788999999988887 5554322221     111211 1123366 57789999999999999999999887643110


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                        .     .                ...++.     ...++.-++.|++|+..|.++|+..-.+..
T Consensus       173 --~-----~----------------~~~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  210 (344)
T 4gqb_B          173 --T-----C----------------VAASPH-----KDSVFLSCSEDNRILLWDTRCPKPASQIGC  210 (344)
T ss_dssp             --E-----E----------------EEECSS-----CTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred             --E-----E----------------EEecCC-----CCCceeeeccccccccccccccceeeeeec
Confidence              0     0                001111     124677889999999999999987766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.40  E-value=0.12  Score=57.60  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEcccc-ceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTG-RLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG-~~~~~~~~~~~~~~~~~~~  112 (549)
                      ++.|++||.++..+. +|.....+....---.+.+.++|| .+.+|+.|+++...|..+| ..+.++......       
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------  142 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF-------  142 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC-------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc-------
Confidence            788889999999987 666544444322222333455577 5888999999999999998 444444332110       


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                           +..           ...+|..     ...++++..|+.|+..|.+++...+.+....
T Consensus       143 -----v~~-----------~~~~p~~-----~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  183 (814)
T 3mkq_A          143 -----VMC-----------VAFNPKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ  183 (814)
T ss_dssp             -----EEE-----------EEEETTE-----EEEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred             -----EEE-----------EEEEcCC-----CCEEEEEeCCCeEEEEECCCCcceeEEecCC
Confidence                 000           0012201     2689999999999999998999888877654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=91.28  E-value=0.14  Score=49.91  Aligned_cols=106  Identities=10%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhh-hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      ++.|+.||.+...+. +|...-.+.... .|. +-+.++|| .++.|+.|+++...|..+|+.+.++.......      
T Consensus        38 l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v------  110 (312)
T 4ery_A           38 LASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV------  110 (312)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------
T ss_pred             EEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCE------
Confidence            678889999888876 554432222111 111 11222344 67889999999999999999988776543100      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                       ..                ...++      ....|+.|..|+.|+..|.++|+....+.
T Consensus       111 -~~----------------~~~~~------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A          111 -FC----------------CNFNP------QSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             -EE----------------EEECS------SSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             -EE----------------EEEcC------CCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence             00                00112      12588999999999999999998776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=91.16  E-value=0.11  Score=52.32  Aligned_cols=74  Identities=12%  Similarity=0.021  Sum_probs=50.6

Q ss_pred             cccccce--eeecCC-cc--hhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCC
Q 042769           29 SELTNSF--FIDCGE-DW--GLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGS  101 (549)
Q Consensus        29 ~~~~~~~--~~~~~~-d~--~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~  101 (549)
                      |++++++  ++.+++ ||  .||.+|. .|..+-..........+|+.+.|| .|++++.+..+|.+|..||+....+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            6777665  455555 66  4999998 555433222232233367888898 477888788999999999998766655


Q ss_pred             C
Q 042769          102 P  102 (549)
Q Consensus       102 ~  102 (549)
                      +
T Consensus       121 ~  121 (388)
T 3pe7_A          121 P  121 (388)
T ss_dssp             C
T ss_pred             h
Confidence            4

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.94  E-value=0.18  Score=51.33  Aligned_cols=110  Identities=8%  Similarity=-0.018  Sum_probs=70.9

Q ss_pred             cceeeecCCcchhhhcccc-ccc-cCCcchhh----hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCc
Q 042769           33 NSFFIDCGEDWGLYAHGLL-GRM-KLPQSIDD----YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~~-g~~-~~~~~~~~----~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      ...++.|+.||.++..|.. +.. ...+....    -+.-+|   +...+.+|+.|+++...|..+|+.+.++.......
T Consensus       186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS---DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC---CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence            4468899999999999872 222 22222111    123334   23468889999999999999999998876543110


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEc--ccceeecccCCCCCceeeeeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR--TDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r--~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                  ..           -..++..     ..++..|.  .|+.|+.+|..+|+....+...
T Consensus       263 ------------~~-----------~~~~p~~-----~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~  303 (401)
T 4aez_A          263 ------------KA-----------VAWCPWQ-----SNLLATGGGTMDKQIHFWNAATGARVNTVDAG  303 (401)
T ss_dssp             ------------CE-----------EEECTTS-----TTEEEEECCTTTCEEEEEETTTCCEEEEEECS
T ss_pred             ------------EE-----------EEECCCC-----CCEEEEecCCCCCEEEEEECCCCCEEEEEeCC
Confidence                        00           0012211     14666654  8999999999999998888643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.86  E-value=0.16  Score=59.86  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=72.5

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQK  114 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~  114 (549)
                      ++.++.||.++..+. +|...........|. +-+.++|+.++.|+.+++++..|..+|+.+.++.......       .
T Consensus      1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v-------~ 1089 (1249)
T 3sfz_A         1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV-------L 1089 (1249)
T ss_dssp             EEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC-------C
T ss_pred             EEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcE-------E
Confidence            688889999998887 555443333333222 2234448999999999999999999999998876543110       0


Q ss_pred             cccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          115 SASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .                ...++.      ...+..++.|++|+..|..+|+....+.
T Consensus      1090 ~----------------~~~s~d------~~~l~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1090 S----------------CAISSD------ATKFSSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             C----------------EEECSS------SSSCEEECCSSCCCEECSSSSSCSBCCC
T ss_pred             E----------------EEECCC------CCEEEEEcCCCcEEEEECCCcceeeeec
Confidence            0                001211      1478889999999999988888776654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.72  E-value=0.084  Score=51.56  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=69.3

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.|+.||.++..|. +|.....+.... .| .+-+.++|| .++.|+.|+++...|..+|+.+.++.......     
T Consensus       121 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----  194 (312)
T 4ery_A          121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----  194 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC-----
T ss_pred             EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc-----
Confidence            4788999999999987 555432222211 11 111223354 67889999999999999999887765432100     


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                       ...                ...++.      ...|+.+..|+.|+.+|..+|+....+.
T Consensus       195 -~~~----------------~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          195 -VSF----------------VKFSPN------GKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             -EEE----------------EEECTT------SSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             -eEE----------------EEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence             000                001221      1578899999999999998988776654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.54  E-value=0.15  Score=51.79  Aligned_cols=112  Identities=9%  Similarity=-0.025  Sum_probs=75.4

Q ss_pred             ccccce--eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCC
Q 042769           30 ELTNSF--FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        30 ~~~~~~--~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      +++++.  ++.++.||.++..+. .+.....+...+ +....+.+.|| .+.+|+.++++...|..+|+.+..+......
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~  141 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRAD-YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE  141 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCC-EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccceeeEEecCC-ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc
Confidence            344444  688889999999998 555544444443 22333344455 6788999999999999999998876543211


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .            ..           -..++.      ...|+.++.|+.|+..|..+|+....+.
T Consensus       142 v------------~~-----------~~~~~~------~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          142 I------------TK-----------LKFFPS------GEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             E------------EE-----------EEECTT------SSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             c------------EE-----------EEECCC------CCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            0            00           001221      2589999999999999999998887664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=90.20  E-value=0.18  Score=51.43  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhh-hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      ++.|+.||.+...|. ++.....+.... .|. +-++++|| .++.|+.|+++..-|..+|+.+.++...+....+    
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~----  212 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV----  212 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE----
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEE----
Confidence            677888998888887 444322222111 111 11122244 6888999999999999999988877654311000    


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                                          ..++.     ....|..|+.|+.|+.+|.++|...-.+
T Consensus       213 --------------------~~~~~-----~~~~l~~~s~d~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          213 --------------------AVSPG-----DGKYIAAGSLDRAVRVWDSETGFLVERL  245 (393)
T ss_dssp             --------------------EECST-----TCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --------------------EEECC-----CCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence                                01111     1258899999999999999998876554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=89.90  E-value=0.18  Score=49.67  Aligned_cols=70  Identities=14%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             ccceeecce-eeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEc
Q 042769           73 EGAVTLGSK-TTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR  151 (549)
Q Consensus        73 dg~v~~Gsk-~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r  151 (549)
                      ++.||+..+ ++.+|++|++|++++.++..+...-+                          +++..      ..||+..
T Consensus        96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~g--------------------------lt~dg------~~L~~Sd  143 (262)
T 3nol_A           96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWG--------------------------LTHND------QYLIMSD  143 (262)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCC--------------------------EEECS------SCEEECC
T ss_pred             CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceE--------------------------EecCC------CEEEEEC
Confidence            557888865 78999999999999999987541110                          11111      5788887


Q ss_pred             ccceeecccCCCCCceeeeeeeh
Q 042769          152 TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       152 ~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      .+..|+-+||+|.++.=++.++.
T Consensus       144 Gs~~i~~iDp~T~~v~~~I~V~~  166 (262)
T 3nol_A          144 GTPVLRFLDPESLTPVRTITVTA  166 (262)
T ss_dssp             SSSEEEEECTTTCSEEEEEECEE
T ss_pred             CCCeEEEEcCCCCeEEEEEEecc
Confidence            77889999999999998888864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.87  E-value=0.28  Score=49.51  Aligned_cols=111  Identities=9%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchhhhhhcCC----Cccccc-ceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAP----HITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP----~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      +.++.++.||.+...|. +|...........-+..+    ++++|| .+..|+.|+++..-|..+|+.+.++....... 
T Consensus       106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v-  184 (357)
T 4g56_B          106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV-  184 (357)
T ss_dssp             TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-
T ss_pred             CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE-
Confidence            44788889999888776 554432222211111111    234466 57789999999999999999999887643110 


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                            ..                -..++.     ....+..+..|+.|+..|.++|+..-.+..
T Consensus       185 ------~~----------------v~~s~~-----~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~  222 (357)
T 4g56_B          185 ------NC----------------VAACPG-----KDTIFLSCGEDGRILLWDTRKPKPATRIDF  222 (357)
T ss_dssp             ------EE----------------EEECTT-----CSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred             ------EE----------------EEEccC-----CCceeeeeccCCceEEEECCCCceeeeeee
Confidence                  00                001111     124677888999999999888876654433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=89.84  E-value=0.43  Score=49.42  Aligned_cols=113  Identities=9%  Similarity=0.025  Sum_probs=73.1

Q ss_pred             eeeecCCcchhhhccc-cccccC----CcchhhhhhcCCCcccc---c-ceeecceeeEEEEEEccccceeeecCCCCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKL----PQSIDDYVKTAPHITEE---G-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~----~~~~~~~v~~sP~~~~d---g-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      .++.|+.||.+|..+. ++...-    .+....---.+-++++|   | .++.|+.|++++..|..+|+.+.++......
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            3688889999999987 544321    22211111111234446   6 7889999999999999999988775432200


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhh
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      .           +..          .. .+       ....|+.++.|+.|+..|.++|+..-.+...+..
T Consensus       243 ~-----------v~~----------~~-~s-------d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~  284 (450)
T 2vdu_B          243 F-----------VSS----------IC-CG-------KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI  284 (450)
T ss_dssp             C-----------EEE----------EE-EC-------STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH
T ss_pred             c-----------eEE----------EE-EC-------CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh
Confidence            0           000          00 11       1258899999999999999999988887766543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=89.47  E-value=0.17  Score=52.33  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=70.0

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchh--hhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSID--DYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~--~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      ..++.|+.||.++..|. +|.....+...  .....++   ++..+++|+.|+++...|..||+.+.++......     
T Consensus       144 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----  215 (435)
T 1p22_A          144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-----  215 (435)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-----
T ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc-----
Confidence            34788999999999998 66554444321  2222222   3668999999999999999999999888654310     


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                             +.               +. .+   +++.++.|+.|+.|+..|.+++...
T Consensus       216 -------v~---------------~l-~~---~~~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          216 -------VL---------------HL-RF---NNGMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             -------EE---------------EE-EC---CTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             -------EE---------------EE-EE---cCCEEEEeeCCCcEEEEeCCCCCCc
Confidence                   00               00 01   1268999999999999998887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=89.37  E-value=0.24  Score=51.53  Aligned_cols=116  Identities=10%  Similarity=0.028  Sum_probs=71.2

Q ss_pred             eeecCC----cchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecc----------eeeEEEEEEccccceeeec
Q 042769           36 FIDCGE----DWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGS----------KTTTVFVLEAKTGRLIRTY   99 (549)
Q Consensus        36 ~~~~~~----d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gs----------k~~~~~~vda~tG~~~~~~   99 (549)
                      |+....    ++.++.+|. +++....+.++..- . .+++.|| .+|+.+          .++++.++|+.|++++.+.
T Consensus        48 yV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I  125 (386)
T 3sjl_D           48 YVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI  125 (386)
T ss_dssp             EEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred             EEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEE
Confidence            555543    789999998 66654333332211 1 3344477 589986          4688999999999999887


Q ss_pred             CCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc--cceeecccCCCCCceeeeeeehh
Q 042769          100 GSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT--DYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~--d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      ..+.... .+.+..            +.  . ...++..      ..+|+...  +..|..+|..++++.-.+.+...
T Consensus       126 ~v~~g~r-~~~g~~------------P~--~-~a~spDG------k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~  181 (386)
T 3sjl_D          126 ELPDAPR-FLVGTY------------PW--M-TSLTPDG------KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  181 (386)
T ss_dssp             EETTCCC-CCBSCC------------GG--G-EEECTTS------SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             ECCCccc-cccCCC------------Cc--e-EEEcCCC------CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc
Confidence            6542000 000000            00  0 0122212      58999853  68999999999999988876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.24  E-value=0.22  Score=50.74  Aligned_cols=109  Identities=12%  Similarity=0.086  Sum_probs=66.2

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc--ceee--cceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG--AVTL--GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg--~v~~--Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.|+.||.++..|. .+.....+.....--.+-+.++||  .+..  |+.|++++..|..+|+.+.++........+ 
T Consensus       231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~-  309 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL-  309 (401)
T ss_dssp             EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEE-
T ss_pred             EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE-
Confidence            4788889999999987 555433332211111122233333  3444  558999999999999999888654311100 


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEE--EcccceeecccCCCCCceeeeeee
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI--TRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i--~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                             ..++..      ..+++  |..|+.|+.+|..++...-.+...
T Consensus       310 -----------------------~~s~~~------~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~  346 (401)
T 4aez_A          310 -----------------------IWSPHS------KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP  346 (401)
T ss_dssp             -----------------------EECSSS------SEEEEEECTTTCEEEEEEEETTEEEEEEEEE
T ss_pred             -----------------------EECCCC------CeEEEEeecCCCcEEEEecCCccceeEEEec
Confidence                                   011111      45666  668999999998787665554443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=89.18  E-value=0.29  Score=47.46  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             CCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEE
Q 042769           68 PHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL  147 (549)
Q Consensus        68 P~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (549)
                      -++++||.+|++. .+.++.+|++ |+.+.++..+.....+.                       ...+      ....|
T Consensus       223 i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~~~~~~-----------------------f~~~------d~~~L  271 (296)
T 3e5z_A          223 LRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQTTSNLC-----------------------FGGP------EGRTL  271 (296)
T ss_dssp             EEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSCCCEEE-----------------------EEST------TSCEE
T ss_pred             EEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCCceeEE-----------------------EECC------CCCEE
Confidence            3567799999999 8899999997 88888887764211000                       0011      11589


Q ss_pred             EEEcccceeecccCCCCCce
Q 042769          148 FITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       148 ~i~r~d~~l~a~d~~~g~~~  167 (549)
                      ||++.+ .|+.++++++++.
T Consensus       272 ~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          272 YMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             EEEETT-EEEEEECSCCBCC
T ss_pred             EEEcCC-eEEEEEccccccc
Confidence            998765 7888998877653

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=88.98  E-value=0.13  Score=49.73  Aligned_cols=76  Identities=12%  Similarity=0.018  Sum_probs=48.7

Q ss_pred             cccCCc-eEEE-eeeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccccc-chhhhh
Q 042769          416 AKGSNG-TVVY-EGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLI  491 (549)
Q Consensus       416 G~G~fG-~V~~-~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~G-sL~~~L  491 (549)
                      ..|..| .||. .....+..+.+|+-.......+.+|...|..+-.+--+.++++++.+.+..|+|||+++| ++.+..
T Consensus        33 ~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~  111 (272)
T 4gkh_A           33 NVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVL  111 (272)
T ss_dssp             ECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHH
T ss_pred             cCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccc
Confidence            334444 3554 333445677777544333445667876665554454577888888888889999999987 665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.94  E-value=0.35  Score=53.84  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh--h---hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID--D---YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~--~---~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      .++.++.||.++..|. .+.....+...  .   .+.-+|.-. +..+++|+.++++...|..+|+.+.++.......  
T Consensus       155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v--  231 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV--  231 (814)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTT-CCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE--
T ss_pred             EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCC-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE--
Confidence            4788889999998887 45444333321  1   223333212 4579999999999999999999998876543110  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                           ..                ...++.      ...|+.++.|+.|+.+|..+|+..+.+....
T Consensus       232 -----~~----------------~~~~~~------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~  270 (814)
T 3mkq_A          232 -----SF----------------AVFHPT------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGL  270 (814)
T ss_dssp             -----EE----------------EEECSS------SSEEEEEETTSCEEEEETTTCSEEEEECCSS
T ss_pred             -----EE----------------EEEcCC------CCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence                 00                001221      2589999999999999999999998886653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=88.91  E-value=0.3  Score=48.93  Aligned_cols=119  Identities=13%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcch-------hhhhhcCCCccccc-ceeeccee---eEEEEEEccccceeeecCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSI-------DDYVKTAPHITEEG-AVTLGSKT---TTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~-------~~~v~~sP~~~~dg-~v~~Gsk~---~~~~~vda~tG~~~~~~~~~  102 (549)
                      .++.|+.||.++..|. .+.....+..       ...| .+-+++.|| .+.+|+.+   +.++..|..+|+.+.++..+
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i-~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE-EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc-ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence            6788999999999997 6665555554       2222 122233344 68888999   99999999999999988763


Q ss_pred             CCCccccchhh-hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          103 HSSSTLQNEEQ-KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       103 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ..+.....+.. ....+.           ....++      ....|+.+..|+.|+.+|.++++....+.
T Consensus       278 ~~~~~~~~~~~~~~~~v~-----------~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          278 THSSQASLGEFAHSSWVM-----------SLSFND------SGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             --------CCBSBSSCEE-----------EEEECS------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccCCcEE-----------EEEECC------CCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            10000000000 000000           000122      12589999999999999999998887776

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=88.85  E-value=0.14  Score=50.25  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      .++.|+.||.++..|. +|.....+....---.+.++++|| .++.|+.|++++..|..+|+.+.++...
T Consensus        46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  115 (369)
T 3zwl_B           46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP  115 (369)
T ss_dssp             EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS
T ss_pred             EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence            3678889999999887 666544443222111222344455 6788999999999999999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.80  E-value=0.67  Score=46.89  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             ceeeecCCcchhhhccc-cc-cccCCcchh-h---hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCc
Q 042769           34 SFFIDCGEDWGLYAHGL-LG-RMKLPQSID-D---YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g-~~~~~~~~~-~---~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      ..++.|+.||.+...|. .+ ...-.+... .   -|.-+|    || .+..||.|+++..-|..+|+.+..+.......
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p----~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP----DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT----TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec----CCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            45788999999988885 22 221112111 1   123344    55 68889999999999999999998876543110


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                           +.... .+.          ....++.      ...|+.|..|+.|+..|..+|+...++
T Consensus       295 -----~~~~~-~v~----------~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          295 -----DNELP-IVT----------SVAFSIS------GRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             -----CCSSC-SCS----------EEEECSS------SSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             -----ccccC-ceE----------EEEECCC------CCEEEEEECCCCEEEEECCCCceEEEE
Confidence                 00000 000          0001221      268999999999999999888877665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=88.78  E-value=0.29  Score=47.95  Aligned_cols=111  Identities=16%  Similarity=0.109  Sum_probs=70.5

Q ss_pred             eeeecCCcchhhhccc-c-cccc-CCcch-hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-L-GRMK-LPQSI-DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~-g~~~-~~~~~-~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.|+.||.++..+. + |... ..+.. ...| .+-+.+.|| .++.|+.|+++...|..+|+.+......+....+ 
T Consensus        56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~-  133 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV-LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTI-  133 (368)
T ss_dssp             EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCE-EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE-
T ss_pred             EEEEECCCCcEEEEEcCCCCceeEEEeccccCCE-EEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEE-
Confidence            4788889999888887 3 3321 11221 1111 111233355 6889999999999999999988755433210000 


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeeh
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                                            . ..+..    ....++.+..|+.|+.+|.++++....+....
T Consensus       134 ----------------------~-~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  171 (368)
T 3mmy_A          134 ----------------------H-WIKAP----NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE  171 (368)
T ss_dssp             ----------------------E-EEECS----SCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred             ----------------------E-EEeCC----CCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence                                  0 10001    12579999999999999999999988876543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=88.77  E-value=0.27  Score=48.14  Aligned_cols=107  Identities=15%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-h---hhcCCCccccc-ceeecceeeEEEEEEcccccee-eecCCCCCCcc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-Y---VKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLI-RTYGSPHSSST  107 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~---v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~-~~~~~~~~~~~  107 (549)
                      .++.|++|+.+...|. +|.....|.... .   |.-+|    || .+..||.|+++..-|..+|..+ .++....... 
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v-  143 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV-  143 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS----SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE-
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC----CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE-
Confidence            3788999999999887 666544443211 1   23334    44 6889999999999999998543 3443321100 


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                            ..                ...+|.     ....+..|+.|++|+..|.+++.....+..+
T Consensus       144 ------~~----------------v~~~p~-----~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~  182 (304)
T 2ynn_A          144 ------MC----------------VAFNPK-----DPSTFASGCLDRTVKVWSLGQSTPNFTLTTG  182 (304)
T ss_dssp             ------EE----------------EEECTT-----CTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred             ------EE----------------EEECCC-----CCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence                  00                001221     1258899999999999998888877666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=88.73  E-value=0.2  Score=49.51  Aligned_cols=71  Identities=13%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             ccceeecce-eeEEEEEEccccceeeecCCC-CCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEE
Q 042769           73 EGAVTLGSK-TTTVFVLEAKTGRLIRTYGSP-HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFIT  150 (549)
Q Consensus        73 dg~v~~Gsk-~~~~~~vda~tG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~  150 (549)
                      ++.+|+..+ +++++++|++|++++.++..+ .  .       + -               + +++.      .+.+|+.
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~-------g-~---------------g-lt~D------g~~l~vs  122 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--D-------G-W---------------G-LATD------GKILYGS  122 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--S-------C-C---------------E-EEEC------SSSEEEE
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--C-------e-E---------------E-EEEC------CCEEEEE
Confidence            558888875 579999999999999998764 1  0       0 0               0 1211      1578998


Q ss_pred             cccceeecccCCCCCceeeeeeehh
Q 042769          151 RTDYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       151 r~d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      -.+..|+.+|+++.++.=++.++..
T Consensus       123 ~gs~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A          123 DGTSILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             CSSSEEEEECTTTCCEEEEEECEET
T ss_pred             CCCCeEEEEECCCCcEEEEEEECCC
Confidence            8889999999999999999998863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=88.50  E-value=0.19  Score=51.02  Aligned_cols=108  Identities=14%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             eeeecCCcchhhhccc-cccccC-------CcchhhhhhcCCCccccc--ceeecceeeEEEEEEccccceeeecC--CC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKL-------PQSIDDYVKTAPHITEEG--AVTLGSKTTTVFVLEAKTGRLIRTYG--SP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~-------~~~~~~~v~~sP~~~~dg--~v~~Gsk~~~~~~vda~tG~~~~~~~--~~  102 (549)
                      .++.|+.||.+...+. ++....       .+....---.+-+.++||  .++.|+.|++++..|..+|+.+.++.  ..
T Consensus        96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            4788889999888887 443211       111111001112234465  68899999999999999999998873  22


Q ss_pred             CCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          103 HSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ...  +     ..                ...++.      ...|+.+..|+.|+.+|.++|+....+.
T Consensus       176 ~~~--v-----~~----------------~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~  215 (402)
T 2aq5_A          176 PDT--I-----YS----------------VDWSRD------GALICTSCRDKRVRVIEPRKGTVVAEKD  215 (402)
T ss_dssp             CSC--E-----EE----------------EEECTT------SSCEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCc--e-----EE----------------EEECCC------CCEEEEEecCCcEEEEeCCCCceeeeec
Confidence            110  0     00                001221      2578999999999999999999887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=88.43  E-value=0.37  Score=46.92  Aligned_cols=70  Identities=11%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             ccceeecc-eeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEc
Q 042769           73 EGAVTLGS-KTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR  151 (549)
Q Consensus        73 dg~v~~Gs-k~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r  151 (549)
                      ++.+|+.. +++.+|++|++|++++.++..+...-+                          ++..      .+.||+.-
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwg--------------------------lt~d------g~~L~vSd  121 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWA--------------------------LTSD------DSHLYMSD  121 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCE--------------------------EEEC------SSCEEEEC
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceE--------------------------EeeC------CCEEEEEC
Confidence            56777775 468999999999999999987641110                          1111      15889998


Q ss_pred             ccceeecccCCCCCceeeeeeeh
Q 042769          152 TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       152 ~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      .+..|+-+||+|.++.=.+.+++
T Consensus       122 gs~~l~~iDp~t~~~~~~I~V~~  144 (243)
T 3mbr_X          122 GTAVIRKLDPDTLQQVGSIKVTA  144 (243)
T ss_dssp             SSSEEEEECTTTCCEEEEEECEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEEcc
Confidence            89999999999999998888875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.37  E-value=0.21  Score=49.22  Aligned_cols=68  Identities=12%  Similarity=0.036  Sum_probs=41.3

Q ss_pred             cccccce--eeecCCcchhhhccc-ccccc-CCcchhhhhhcCCCcccccceeecceee-----EEEEEEccccceee
Q 042769           29 SELTNSF--FIDCGEDWGLYAHGL-LGRMK-LPQSIDDYVKTAPHITEEGAVTLGSKTT-----TVFVLEAKTGRLIR   97 (549)
Q Consensus        29 ~~~~~~~--~~~~~~d~~ly~~~~-~g~~~-~~~~~~~~v~~sP~~~~dg~v~~Gsk~~-----~~~~vda~tG~~~~   97 (549)
                      +++..+.  |+.+..++.||.+|. .|..+ +....... -.+-+++.||.+|++...+     .++.+|+++|+...
T Consensus        50 ~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           50 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN-PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSS-EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             cEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC-cceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            4444333  445677888888887 44332 11011111 1223455699999987554     89999999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=88.32  E-value=0.33  Score=48.93  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=67.8

Q ss_pred             eeeecCCcchhhhccc-ccccc--CCcchhh----hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMK--LPQSIDD----YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~--~~~~~~~----~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      .++.++.||.+...|. .|...  +.+...+    -|.-+|  ..+..+..|+.++++...|..+|+.+.++....... 
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v-  272 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP--EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI-  272 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT--TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE-
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh--cccceEEEeecccceeEEECCCCcEeEEEeccceeE-
Confidence            4778889999988887 55543  2222221    122333  112357789999999999999999998876543110 


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                            ..                -..+|..     ...|..|+.|++|+-.|.++|++....
T Consensus       273 ------~~----------------l~~sp~~-----~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          273 ------TG----------------LAYSYHS-----SPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             ------EE----------------EEECSSS-----SCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ------EE----------------EEEcCCC-----CCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence                  00                0011111     146778999999999999999877543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=88.20  E-value=0.15  Score=49.85  Aligned_cols=67  Identities=7%  Similarity=0.055  Sum_probs=48.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      .++.|+.||.+...|. .+.....+...+.|.+ -+.++++.+.+|+.++++...|.+++..++++...
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~  296 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQE  296 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEECSSCEEE-EEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEEeccCceeeeecCCceEEe-eecCCCCceeeccCCCEEEEEECCCCeEEEecccc
Confidence            3678889999888887 5544444444443322 23445888999999999999999999999887654

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=88.12  E-value=0.055  Score=53.77  Aligned_cols=73  Identities=11%  Similarity=0.024  Sum_probs=41.8

Q ss_pred             ccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCC--eeEEeeeccCcc---eEEEEeccccc-
Q 042769          413 TEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPN--IVRWYGVENDKD---FVYLSLERCTC-  485 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpN--IVrl~g~~~~~~---~~yLVmE~~~G-  485 (549)
                      +.++.|....||..+    +.+++|+.... ......+|...|..+..+..  +.+.+.......   ..|+|||+++| 
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~  101 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGV  101 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCe
Confidence            458888888776632    34555543221 23356678766655433322  445555544333   35889999987 


Q ss_pred             chhh
Q 042769          486 SLDD  489 (549)
Q Consensus       486 sL~~  489 (549)
                      .|.+
T Consensus       102 ~l~~  105 (304)
T 3sg8_A          102 PLTP  105 (304)
T ss_dssp             ECCH
T ss_pred             ECCc
Confidence            5653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.08  E-value=0.1  Score=51.43  Aligned_cols=107  Identities=10%  Similarity=0.001  Sum_probs=65.6

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccc--ccceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITE--EGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~--dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.|+.||.++..|. +|.....+....---.+-+.++  ...++.|+.|++++..|..+|+.+..+.......    +
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~  162 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR----D  162 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS----S
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc----C
Confidence            5788899999999997 5655444432111111112222  3468899999999999999999998874211000    0


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                      .     +..           ...++      ....++.+..|+.|+.+|.++++..
T Consensus       163 ~-----v~~-----------~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          163 E-----VLS-----------ADYDL------LGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             C-----EEE-----------EEECT------TSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             c-----eeE-----------EEECC------CCCEEEEecCCCCEEEEECCCCccc
Confidence            0     000           00111      1257888889999998887766544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.96  E-value=0.22  Score=48.78  Aligned_cols=110  Identities=9%  Similarity=0.007  Sum_probs=68.3

Q ss_pred             eeeecCCcchhhhccc-ccc-ccCCcchhh-----h---hhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGR-MKLPQSIDD-----Y---VKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~-~~~~~~~~~-----~---v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~  103 (549)
                      .++.|+.||.++..|. .+. ....+....     .   +.-+|+.+.|| .+++|+.+++++..|.++|+.++......
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  210 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN  210 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCC
Confidence            4788899999999887 444 222222211     1   12222344454 67788999999999999999877654432


Q ss_pred             CCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          104 SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ....+                        ..++..   .....++++..|+.|+.+|.++++....+.
T Consensus       211 ~v~~~------------------------~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          211 GVCSL------------------------EFDRKD---ISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             CEEEE------------------------EESCSS---SSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             ceEEE------------------------EcCCCC---CCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence            11100                        012100   012689999999999999888877766654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.90  E-value=0.25  Score=49.15  Aligned_cols=107  Identities=12%  Similarity=0.070  Sum_probs=64.2

Q ss_pred             eeecCCcchhhhccccccc-cCCcchhh--------------hhhcCCCcccccceeecceeeEEEEEEccccceeeecC
Q 042769           36 FIDCGEDWGLYAHGLLGRM-KLPQSIDD--------------YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYG  100 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~~g~~-~~~~~~~~--------------~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~  100 (549)
                      ++.|+.|+.+...+.++.. .|.+...+              .+.-+|.+. +..+..|+.|+++...|..+|+.+..+.
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~  166 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIGFQSYEDDSQYIVHS  166 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEEC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            7888899888777653221 12211111              123344333 4456669999999999999999876654


Q ss_pred             CCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce-eeee
Q 042769          101 SPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS-WSMT  171 (549)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~-Wn~~  171 (549)
                      ......      ...                ...+|.      ...+..|..|+.|+.+|.++|+.. -.+.
T Consensus       167 ~~~~~~------i~~----------------~~~~pd------g~~lasg~~dg~i~iwd~~~~~~~~~~~~  210 (343)
T 3lrv_A          167 AKSDVE------YSS----------------GVLHKD------SLLLALYSPDGILDVYNLSSPDQASSRFP  210 (343)
T ss_dssp             CCSSCC------CCE----------------EEECTT------SCEEEEECTTSCEEEEESSCTTSCCEECC
T ss_pred             cCCCCc------eEE----------------EEECCC------CCEEEEEcCCCEEEEEECCCCCCCccEEe
Confidence            432100      000                001221      257888999999999999999876 4443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=87.59  E-value=0.3  Score=48.95  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             eeeecCCcchhhhccccccccCCcchhhhhhcCCCccccc--ceeecceeeEEEEEEccc----cceeeecCCCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEG--AVTLGSKTTTVFVLEAKT----GRLIRTYGSPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg--~v~~Gsk~~~~~~vda~t----G~~~~~~~~~~~~~~~  108 (549)
                      .++.|+.||.++..|..|.....+....---.+-+.++||  .++.|+.|+++...|..+    ++.+.++...+.... 
T Consensus       177 ~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-  255 (383)
T 3ei3_B          177 MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA-  255 (383)
T ss_dssp             EEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEE-
T ss_pred             EEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEE-
Confidence            4788889999998887555443333222111222344466  589999999999999998    666666532211000 


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                                             -..++.     ....|+.++.|+.|+.+|.++++..-.+.
T Consensus       256 -----------------------~~~s~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          256 -----------------------AYFNPT-----DSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             -----------------------EEECTT-----TSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             -----------------------EEEcCC-----CCCEEEEEcCCCcEEEEECCCCccccccc
Confidence                                   001210     11588999999999999998888765554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.56  E-value=0.3  Score=50.62  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             ccccccce---eeecCCcch--hhhccc-cccccCCcchhhhhhcCCCcccccc-eeecceee---EEEEEEcccccee
Q 042769           28 ASELTNSF---FIDCGEDWG--LYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTLGSKTT---TVFVLEAKTGRLI   96 (549)
Q Consensus        28 ~~~~~~~~---~~~~~~d~~--ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~~---~~~~vda~tG~~~   96 (549)
                      ++++++++   ++.++.||.  ||..|. +|..+ .++.......+|+.++||. +++++.++   .+|.+|..+|+..
T Consensus       227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~  304 (415)
T 2hqs_A          227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ  304 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred             CEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence            46677655   335666665  999888 55442 2222233456678888996 66676533   8999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=87.54  E-value=0.56  Score=45.80  Aligned_cols=109  Identities=15%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh-----hhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID-----DYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      .++.|+.|+.+...|. .+.....+...     ..+.-+|.-. ...+..||.|+++..-|..+|+.+.++.......  
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v--  231 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV--  231 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT-CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--
T ss_pred             EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC-CCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE--
Confidence            4788889998888876 44332222211     1233344322 3478899999999999999999998876543110  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                           ..                ...+|.      ...|.-|+.|++|+..|.++++....+..+
T Consensus       232 -----~~----------------~~~~p~------~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          232 -----SF----------------AVFHPT------LPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             -----EE----------------EEECSS------SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred             -----EE----------------EEECCC------CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence                 00                001221      158889999999999999999988777644

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=87.45  E-value=0.46  Score=52.43  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=47.6

Q ss_pred             cccccce-eeecCCcchhhhccc-cccccCCcchhhh---hhcCCCcccccc-eeecce---------eeEEEEEEcccc
Q 042769           29 SELTNSF-FIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAPHITEEGA-VTLGSK---------TTTVFVLEAKTG   93 (549)
Q Consensus        29 ~~~~~~~-~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP~~~~dg~-v~~Gsk---------~~~~~~vda~tG   93 (549)
                      ++.++++ |+..+.|+.++..|. .|..+..+.-...   -..+|.+|.||. |.+++.         +++++..|.+||
T Consensus        21 ~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           21 PNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             CEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             cEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            4444444 666667999999998 5555443443332   146788888996 556655         789999999999


Q ss_pred             cee
Q 042769           94 RLI   96 (549)
Q Consensus        94 ~~~   96 (549)
                      +.+
T Consensus       101 ~~~  103 (719)
T 1z68_A          101 EFV  103 (719)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=87.42  E-value=0.62  Score=45.43  Aligned_cols=72  Identities=13%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             ccc-cc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEE
Q 042769           70 ITE-EG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL  147 (549)
Q Consensus        70 ~~~-dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (549)
                      ++. || .+|++  ++.++.+|.+||+.+.++..+.....+                       . .++.      ...|
T Consensus       262 ~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~-----------------------~-~s~d------g~~l  309 (349)
T 1jmx_B          262 RSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCV-----------------------A-FDKK------GDKL  309 (349)
T ss_dssp             ECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEE-----------------------E-ECSS------SSCE
T ss_pred             ecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccce-----------------------E-ECCC------CCEE
Confidence            445 66 56666  899999999999998887654311100                       0 1211      1478


Q ss_pred             EEEcccceeecccCCCCCceeeeeee
Q 042769          148 FITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       148 ~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      |++..++.|+.+|.+++++..++.+.
T Consensus       310 ~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          310 YLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEecCCCeEEEEeccccceeeeeecC
Confidence            88989999999999999998887664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=87.37  E-value=0.4  Score=50.54  Aligned_cols=117  Identities=13%  Similarity=0.052  Sum_probs=73.4

Q ss_pred             eeeecCCc----chhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecc----------eeeEEEEEEccccceeee
Q 042769           35 FFIDCGED----WGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGS----------KTTTVFVLEAKTGRLIRT   98 (549)
Q Consensus        35 ~~~~~~~d----~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gs----------k~~~~~~vda~tG~~~~~   98 (549)
                      +|+..+.+    +.++.+|. +++....+.++.. . -.+++.|| .+|+++          .++++.+||+.|++++.+
T Consensus        87 vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~-P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           87 VYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL-P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS-C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC-C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            36666554    78999998 6666443333221 1 23344477 699987          478999999999999988


Q ss_pred             cCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc--cceeecccCCCCCceeeeeeehh
Q 042769           99 YGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT--DYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~--d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      ...++... ...+            +.+.  . ...++.      ...+|+...  +..|..+|..++++.-.+.++..
T Consensus       165 I~v~g~~r-~~~g------------~~P~--~-~~~spD------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~  221 (426)
T 3c75_H          165 IELPDAPR-FLVG------------TYQW--M-NALTPD------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC  221 (426)
T ss_dssp             EEETTCCC-CCBS------------CCGG--G-SEECTT------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             EECCCccc-cccC------------CCcc--e-EEEcCC------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc
Confidence            76641000 0000            0000  0 012221      268999863  67899999999999999988654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=86.96  E-value=0.23  Score=49.54  Aligned_cols=106  Identities=12%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh----hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD----YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~----~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.|+.||.+...|. +|.....|....    -|.-+|   +...+..||.|+++...|..+++.+.++..+....++ 
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p---~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v-  273 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP---NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI-  273 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE-
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC---CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce-
Confidence            4788899999999887 555433333211    123334   1346888999999999999999998877654210000 


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                               ..           -..++.      ...|..|..|+.|+..|..+++..-.+
T Consensus       274 ---------~~-----------~~~s~~------g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          274 ---------TS-----------VSFSKS------GRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             ---------EE-----------EEECTT------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ---------EE-----------EEECCC------CCEEEEECCCCeEEEEEcccCcEeeEe
Confidence                     00           001221      258899999999999998888765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=86.89  E-value=0.28  Score=48.82  Aligned_cols=104  Identities=12%  Similarity=0.079  Sum_probs=69.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh----hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD----YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~----~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      .++.++.|+.+...|. +|.....|....    -+.-+|    || .++.|+.|+++..-|..+|+.+.++.......  
T Consensus       156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v--  229 (340)
T 1got_B          156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP----DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI--  229 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--
T ss_pred             cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC----CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE--
Confidence            3678888999888886 555433332211    122333    44 57889999999999999999998876543110  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                           ..                -..+|.      ...+..|+.|++|+..|.++++....+.
T Consensus       230 -----~~----------------v~~~p~------~~~l~s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          230 -----NA----------------ICFFPN------GNAFATGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             -----EE----------------EEECTT------SSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             -----EE----------------EEEcCC------CCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence                 00                001221      2588999999999999998888776654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=86.88  E-value=0.65  Score=54.66  Aligned_cols=106  Identities=13%  Similarity=0.028  Sum_probs=69.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      +..|+.||.++..+. +|.....+....---.+-++++|| .+..|+.|+++...|..+|+.+..........       
T Consensus       976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~------- 1048 (1249)
T 3sfz_A          976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK------- 1048 (1249)
T ss_dssp             EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-------
T ss_pred             EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-------
Confidence            677888999988887 555433222211111222344465 57889999999999999999875443221000       


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                            .           ....+       .+.++.++.|+.|+..|..+|+....+.-
T Consensus      1049 ------~-----------~~~~~-------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A         1049 ------D-----------FRLLQ-------DSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp             ------E-----------EEECS-------SSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred             ------E-----------EEEcC-------CCcEEEEECCCcEEEEECCCCceeEEEcc
Confidence                  0           00111       25788999999999999999998877653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=86.74  E-value=0.51  Score=48.49  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccc
Q 042769           75 AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY  154 (549)
Q Consensus        75 ~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~  154 (549)
                      .+..||.|+++..-|..+|+.+.++.......       ..                -..++.      ...|+.|+.|+
T Consensus       310 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v-------~~----------------v~~~~~------g~~l~s~s~D~  360 (410)
T 1vyh_C          310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV-------RG----------------VLFHSG------GKFILSCADDK  360 (410)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCE-------EE----------------EEECSS------SSCEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCceEEEEECCCCcE-------EE----------------EEEcCC------CCEEEEEeCCC
Confidence            58889999999999999999998876543100       00                001111      25788899999


Q ss_pred             eeecccCCCCCceeeee
Q 042769          155 TLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       155 ~l~a~d~~~g~~~Wn~~  171 (549)
                      +|+..|.++|+..-.+.
T Consensus       361 ~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          361 TLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             EEEEECCTTSCCCEEEE
T ss_pred             eEEEEECCCCceEEEEc
Confidence            99999998888765553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=86.71  E-value=0.44  Score=48.36  Aligned_cols=103  Identities=13%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCc--ch-hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecC-CCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQ--SI-DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYG-SPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~--~~-~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~-~~~~~~~~  108 (549)
                      .++.|+.||.++..|. .|.....+  .. .+.| .+-+.+.|| .+++|+.|+++...|..+|+.+.++. ......  
T Consensus       146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--  222 (402)
T 2aq5_A          146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI-YSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR--  222 (402)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE-EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS--
T ss_pred             EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce-EEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc--
Confidence            5788899999999987 56554333  11 1111 111223244 68889999999999999999998873 322100  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEE---cccceeecccCCCCCc
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFIT---RTDYTLQSFEPNSDNV  166 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~---r~d~~l~a~d~~~g~~  166 (549)
                               +..           ...++      ....|+.|   +.|+.|+.+|.++++.
T Consensus       223 ---------~~~-----------~~~~~------~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          223 ---------PVH-----------AVFVS------EGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             ---------CCE-----------EEECS------TTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             ---------ceE-----------EEEcC------CCcEEEEeccCCCCceEEEEcCccccC
Confidence                     000           00111      12578888   7999999999988776

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=86.23  E-value=1.1  Score=45.53  Aligned_cols=129  Identities=11%  Similarity=0.059  Sum_probs=75.9

Q ss_pred             eeeecCCcchhhhccc-cccccCCcc--hhh---hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQS--IDD---YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~--~~~---~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      .++.|+.||.++..|. .|...-.+.  -..   -+.-+|..+.|| .+..|+.|+++...|..+|+.+.++........
T Consensus       228 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  307 (437)
T 3gre_A          228 VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS  307 (437)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC
T ss_pred             EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc
Confidence            3788999999999887 555432222  121   355677777788 788899999999999999999988876531110


Q ss_pred             ---ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeee
Q 042769          108 ---LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       108 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                         +..+++.   +.+.......... ...+. .+.  ....|+.|..|+.|+..|.++|+..-.+
T Consensus       308 ~~~~~~~~~~---l~~~~~~~~~~~~-~v~~l-~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          308 MEHFLPIEKG---LEELNFCGIRSLN-ALSTI-SVS--NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             GGGGSCBCSS---GGGCCCCCCCSGG-GGCCE-EEE--TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             cceecccccc---cccceecccccCC-ceEEE-EEC--CceEEEecCCCCeEEEEECCCcccceEE
Confidence               0000000   0000000000000 00000 110  1258899999999999998888876544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=86.03  E-value=0.7  Score=45.95  Aligned_cols=109  Identities=13%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             eeeecCCcchhhhccc-cccccCCcch--------------hhhhhcCCCccc-c-cceeecceeeEEEEEEccccceee
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSI--------------DDYVKTAPHITE-E-GAVTLGSKTTTVFVLEAKTGRLIR   97 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~--------------~~~v~~sP~~~~-d-g~v~~Gsk~~~~~~vda~tG~~~~   97 (549)
                      .++.|+.||.+...+. ++.....+..              ...|. +-+.++ + ..+..|+.++++...|..+|+.+.
T Consensus        58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  136 (408)
T 4a11_B           58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD  136 (408)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETTSEEEEEETTTTEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCCCeEEEeeCCCCccce
Confidence            4788889999999988 5554444431              11111 111222 3 368889999999999999999998


Q ss_pred             ecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769           98 TYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      .+........+.                        ..+..   .....++++..|+.|+.+|.++|+....+.
T Consensus       137 ~~~~~~~~~~~~------------------------~~~~~---~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          137 VFNFEETVYSHH------------------------MSPVS---TKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             EEECSSCEEEEE------------------------ECSSC---SSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             eccCCCceeeeE------------------------eecCC---CCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence            887654111000                        01100   012489999999999999999998887765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=85.92  E-value=0.8  Score=45.10  Aligned_cols=71  Identities=10%  Similarity=-0.005  Sum_probs=51.0

Q ss_pred             ccceeecce---eeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEE
Q 042769           73 EGAVTLGSK---TTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI  149 (549)
Q Consensus        73 dg~v~~Gsk---~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i  149 (549)
                      ||.+|+++-   ++++.+||++||+++.+...+...-        .+               + ....      .+.||+
T Consensus        31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f--------ge---------------G-i~~~------g~~lyv   80 (266)
T 2iwa_A           31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF--------GE---------------G-LTLL------NEKLYQ   80 (266)
T ss_dssp             TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--------EE---------------E-EEEE------TTEEEE
T ss_pred             CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--------eE---------------E-EEEe------CCEEEE
Confidence            689999753   5899999999999998876543100        00               0 0110      146777


Q ss_pred             Ec-ccceeecccCCCCCceeeeeee
Q 042769          150 TR-TDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       150 ~r-~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      .. .+..+..+|+++++++-.+.++
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g  105 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQ  105 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECC
T ss_pred             EEecCCEEEEEECCCCcEEEEEECC
Confidence            75 5789999999999999888776

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=85.90  E-value=0.64  Score=47.72  Aligned_cols=100  Identities=15%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh-hh---hhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID-DY---VKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~-~~---v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      .++.|+.||.+...|. .+...-.+... ..   +.-+|    || .++.||.|+++..-|..+|+.+.++.......  
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v--  237 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--  237 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--
T ss_pred             EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE--
Confidence            4788899999888886 43332222211 11   22333    44 68889999999999999999988876542100  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                                ..           ...++      ....|..++.|++|+..|..+++..
T Consensus       238 ----------~~-----------~~~~~------~g~~l~s~s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          238 ----------RM-----------VRPNQ------DGTLIASCSNDQTVRVWVVATKECK  269 (410)
T ss_dssp             ----------EE-----------EEECT------TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ----------EE-----------EEECC------CCCEEEEEcCCCeEEEEECCCCcee
Confidence                      00           00111      1257888999999999998777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=85.48  E-value=1.1  Score=42.91  Aligned_cols=106  Identities=11%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             eeecCCcchhhhccccccccCCcchhhh---hhcCC---Cc-ccccceeecce--eeEEEEEEccccceeeecCCCCCCc
Q 042769           36 FIDCGEDWGLYAHGLLGRMKLPQSIDDY---VKTAP---HI-TEEGAVTLGSK--TTTVFVLEAKTGRLIRTYGSPHSSS  106 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~~g~~~~~~~~~~~---v~~sP---~~-~~dg~v~~Gsk--~~~~~~vda~tG~~~~~~~~~~~~~  106 (549)
                      |+.++.++.|+..+.+|.....|.....   -...|   ++ ..+|.+|++..  ++.++.+| .+|+.++++.......
T Consensus        44 ~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~  122 (286)
T 1q7f_A           44 IVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQH  122 (286)
T ss_dssp             EEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSC
T ss_pred             EEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCC
Confidence            5555677788888776655443332110   00112   23 35889999874  78999999 6788888775432000


Q ss_pred             cccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEc-ccceeecccCCCCCceeeeee
Q 042769          107 TLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR-TDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r-~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                              ..++              ..++       .+.+||+. .+..|+.+|+ +|+..+.+..
T Consensus       123 --------~~~i--------------~~~~-------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  159 (286)
T 1q7f_A          123 --------PRGV--------------TVDN-------KGRIIVVECKVMRVIIFDQ-NGNVLHKFGC  159 (286)
T ss_dssp             --------EEEE--------------EECT-------TSCEEEEETTTTEEEEECT-TSCEEEEEEC
T ss_pred             --------ceEE--------------EEeC-------CCCEEEEECCCCEEEEEcC-CCCEEEEeCC
Confidence                    0000              0111       14677774 5788999997 6887776643

>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*

Probab=84.78  E-value=0.73  Score=50.28  Aligned_cols=59  Identities=17%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             hhhhccccccccCCcchhhh---hhcCCCcccccceee-----------c----ceeeEEEEEEccccceeeecCCCC
Q 042769           44 GLYAHGLLGRMKLPQSIDDY---VKTAPHITEEGAVTL-----------G----SKTTTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        44 ~ly~~~~~g~~~~~~~~~~~---v~~sP~~~~dg~v~~-----------G----sk~~~~~~vda~tG~~~~~~~~~~  103 (549)
                      .+|.+|..|+..|.++.+.-   .+=.-.+.++|.+.+           |    .-++.++.|| .||+++|..++.+
T Consensus       227 ~i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~d  303 (571)
T 3elq_A          227 HWYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLTK  303 (571)
T ss_dssp             EEEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHHH
T ss_pred             EEEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhHH
Confidence            48888889999888777531   122233445787655           1    1256899999 9999999887644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=84.61  E-value=0.58  Score=51.42  Aligned_cols=67  Identities=7%  Similarity=-0.017  Sum_probs=46.5

Q ss_pred             cccccce-eeecCCcchhhhccc-cccccCCcchhhh---hhcCCCcccccc-eeecce---------eeEEEEEEcccc
Q 042769           29 SELTNSF-FIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAPHITEEGA-VTLGSK---------TTTVFVLEAKTG   93 (549)
Q Consensus        29 ~~~~~~~-~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP~~~~dg~-v~~Gsk---------~~~~~~vda~tG   93 (549)
                      +++++++ ++..+.||.++..|. +|..+..+.....   --.++.+++||. |.+++.         +++++..|.+||
T Consensus        22 ~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  101 (723)
T 1xfd_A           22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (723)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             cEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC
Confidence            5566555 666678999999998 6766444443332   135678888996 445543         388999999999


Q ss_pred             ce
Q 042769           94 RL   95 (549)
Q Consensus        94 ~~   95 (549)
                      +.
T Consensus       102 ~~  103 (723)
T 1xfd_A          102 DP  103 (723)
T ss_dssp             CC
T ss_pred             ce
Confidence            86

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=84.54  E-value=0.43  Score=46.35  Aligned_cols=106  Identities=12%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh-hhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID-DYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~-~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.|+.|+.++..|. .+.....+... ..|. +=++++|| .++.|+.|+++..-|..+++.+..+........+   
T Consensus       187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~---  262 (340)
T 4aow_A          187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL---  262 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEE---
T ss_pred             EEEEEcCCCEEEEEECCCCceeeEecCCCCcEE-EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEee---
Confidence            3577888999888887 45443322211 1111 11233355 5778999999999999999999887664311100   


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                                           ..++       .+.+..+..|+.|+..|.+++...+.+.-
T Consensus       263 ---------------------~~~~-------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          263 ---------------------CFSP-------NRYWLCAATGPSIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             ---------------------EECS-------SSSEEEEEETTEEEEEETTTTEEEEEECC
T ss_pred             ---------------------ecCC-------CCceeeccCCCEEEEEECCCCeEEEeccc
Confidence                                 0111       14677888999999999988888877653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=84.31  E-value=0.52  Score=47.33  Aligned_cols=110  Identities=11%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh------hhhhcCCCccccc--ceeecceee---EEEEEEcccc-ceeeecC-
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID------DYVKTAPHITEEG--AVTLGSKTT---TVFVLEAKTG-RLIRTYG-  100 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~------~~v~~sP~~~~dg--~v~~Gsk~~---~~~~vda~tG-~~~~~~~-  100 (549)
                      .++.|+.||.++..|. .+.....+...      ..--.+-++++||  .+.+|+.++   +++..|..++ +.+.++. 
T Consensus       180 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~  259 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ  259 (416)
T ss_dssp             EEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS
T ss_pred             EEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec
Confidence            4788899999999987 55543333321      1111222334465  688899888   9999999998 5555554 


Q ss_pred             CCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          101 SPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                      .....            +..           -..++.     ....|+.+..|+.|+..|.++|+..-.+..
T Consensus       260 ~~~~~------------v~~-----------~~~s~~-----~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          260 GHQKG------------ILS-----------LDWCHQ-----DEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             CCSSC------------EEE-----------EEECSS-----CSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             CccCc------------eeE-----------EEeCCC-----CCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            22100            000           001210     125889999999999999999988776653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=83.85  E-value=0.43  Score=47.54  Aligned_cols=103  Identities=13%  Similarity=0.110  Sum_probs=69.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhh---hhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      .++.|+.||.++..|. .+.....+...+.   +..+|.-.....+++|+.++.++..|..+|+.+.++.......    
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v----  189 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI----  189 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE----
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE----
Confidence            4788889999999987 5555444444332   3444543333378999999999999999999988877543110    


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCC
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDN  165 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~  165 (549)
                         ..                ...++..     ..+++.+..|+.|+.+|.+++.
T Consensus       190 ---~~----------------~~~~~~~-----~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          190 ---LA----------------VSWSPRY-----DYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             ---EE----------------EEECSSC-----TTEEEEEETTSCEEEEETTCSS
T ss_pred             ---EE----------------EEECCCC-----CcEEEEEcCCCcEEEEECCCCC
Confidence               00                0011111     1368899999999999987776

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=83.53  E-value=0.28  Score=48.08  Aligned_cols=66  Identities=8%  Similarity=0.038  Sum_probs=45.5

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhh---hhcCCCcccccceeecceeeEEEEEEccccceeeecC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYG  100 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~  100 (549)
                      .++.++.||.++..|. .+...........   +.-+|.-..+..+++|+.+++++..|..+++.+.++.
T Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          182 VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence            3788889999999998 5554333322222   2333322136679999999999999999998876654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=83.51  E-value=0.99  Score=46.58  Aligned_cols=67  Identities=9%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             ccccccce--eeecCC-cc--hhhhccc-cccc-cCCcchhhhhhcCCCcccccc-eeeccee---eEEEEEEcccccee
Q 042769           28 ASELTNSF--FIDCGE-DW--GLYAHGL-LGRM-KLPQSIDDYVKTAPHITEEGA-VTLGSKT---TTVFVLEAKTGRLI   96 (549)
Q Consensus        28 ~~~~~~~~--~~~~~~-d~--~ly~~~~-~g~~-~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~---~~~~~vda~tG~~~   96 (549)
                      .+++++++  ++.+++ |+  .||..|. .|.. ++.+.  ..-..+|+++.||. +++++.+   .+++.+|.+||+..
T Consensus       271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             ceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            35666554  444444 44  7998888 4443 23322  22234677888985 5555543   69999999999875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=83.43  E-value=0.51  Score=50.15  Aligned_cols=110  Identities=9%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhh---hhcCCCcccc-c-ceeecceeeEEEEEEccccceeeecCC---CCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAPHITEE-G-AVTLGSKTTTVFVLEAKTGRLIRTYGS---PHSS  105 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP~~~~d-g-~v~~Gsk~~~~~~vda~tG~~~~~~~~---~~~~  105 (549)
                      .++.++.||.++..|. .+.....+....-   --.+-++++| | .+++|+.+++++..|..+|+.+.++..   ... 
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-  253 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ-  253 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC-
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC-
Confidence            5788889999999887 5554333332111   1112233446 5 577899999999999999999988832   110 


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      ..          +..          -. .+       ....++.+..|+.|+.+|.++|+....+...
T Consensus       254 ~~----------v~~----------~~-~~-------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          254 GG----------IFA----------LS-WL-------DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             SC----------EEE----------EE-ES-------SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             Cc----------eEE----------EE-Ec-------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            00          000          00 11       1258899999999999999999998887765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=83.01  E-value=0.52  Score=48.16  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=72.4

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcch---hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSI---DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~---~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      ..++.|+.||.++..|. .+.....+..   ...|. +=++++|| .+..|+.|+++...|..+|+.+.++..+....  
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--  259 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS-SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP--  259 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE-EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE--
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE-EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc--
Confidence            34788999999999998 6666554443   11111 11223345 57789999999999999999998876433100  


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                               +..      ..+.|. .++      ....|..|+.|+.|+..|.++|+....+.
T Consensus       260 ---------v~~------~~~~~~-~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          260 ---------ITH------VEVCQF-YGK------NSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             ---------EEE------EEECTT-TCT------TEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             ---------eEE------EEeccc-cCC------CccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence                     000      000000 011      11588899999999999998888776554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=82.89  E-value=0.58  Score=45.72  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=68.2

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCc--cccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHI--TEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~--~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      .++.|+.||.++..|. .+.....+.....|.+ -+.  +.|| .++.|+.|++++..|..+|+.+.++..+....    
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----  174 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT-IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY----  174 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEE-EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE----
T ss_pred             EEEEEcCCCcEEEEEcCCCCceeeccccCceEE-EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce----
Confidence            4788889999998887 4443222222222211 111  3355 58899999999999999999998887753100    


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                          .                  .+.      ....++++..|+.++.+|..++...+...
T Consensus       175 ----~------------------~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  207 (368)
T 3mmy_A          175 ----C------------------ADV------IYPMAVVATAERGLIVYQLENQPSEFRRI  207 (368)
T ss_dssp             ----E------------------EEE------ETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred             ----E------------------EEe------cCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence                0                  011      11478889999999999987776666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=82.89  E-value=1.1  Score=44.65  Aligned_cols=74  Identities=11%  Similarity=0.137  Sum_probs=48.6

Q ss_pred             CCcccccc-eeecce-ee--EEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccC
Q 042769           68 PHITEEGA-VTLGSK-TT--TVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKE  143 (549)
Q Consensus        68 P~~~~dg~-v~~Gsk-~~--~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (549)
                      |++++||. |++++. ++  .+|.+|++||+.......+....                      ..+. .+|..     
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~----------------------~~~~-~spdg-----   92 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNT----------------------FGGF-LSPDD-----   92 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCS----------------------SSCE-ECTTS-----
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCc----------------------cceE-EcCCC-----
Confidence            88888995 555554 55  59999999999876543332000                      0001 12211     


Q ss_pred             ceEEEEEcccceeecccCCCCCceeee
Q 042769          144 PYLLFITRTDYTLQSFEPNSDNVSWSM  170 (549)
Q Consensus       144 ~~~v~i~r~d~~l~a~d~~~g~~~Wn~  170 (549)
                       ..|++.+.+..|+.+|..+|+.+--+
T Consensus        93 -~~l~~~~~~~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           93 -DALFYVKDGRNLMRVDLATLEENVVY  118 (388)
T ss_dssp             -SEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             -CEEEEEeCCCeEEEEECCCCcceeee
Confidence             47888888899999999999876443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=82.62  E-value=1.5  Score=43.78  Aligned_cols=113  Identities=5%  Similarity=0.021  Sum_probs=67.1

Q ss_pred             eeeecCCcchhhhccc-ccc------ccCCc---c-hhhhhhcCCCcccc--cceeecceeeEEEEEEccccceeeecCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGR------MKLPQ---S-IDDYVKTAPHITEE--GAVTLGSKTTTVFVLEAKTGRLIRTYGS  101 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~------~~~~~---~-~~~~v~~sP~~~~d--g~v~~Gsk~~~~~~vda~tG~~~~~~~~  101 (549)
                      .++.|+.||.++..|. .+.      .....   . ....| .+-+.++|  ..++.|+.++++...|..+|+.+.++..
T Consensus       128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  206 (416)
T 2pm9_A          128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV-ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY  206 (416)
T ss_dssp             BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC-CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe-eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec
Confidence            4788999999999988 554      22221   0 11111 12223445  3688899999999999999999988877


Q ss_pred             CCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccc---eeecccCCCC-Cceeee
Q 042769          102 PHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY---TLQSFEPNSD-NVSWSM  170 (549)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~---~l~a~d~~~g-~~~Wn~  170 (549)
                      .....+.    ...  +.           ....++..     ...++.+..|+   .|+.+|.+++ .....+
T Consensus       207 ~~~~~~~----~~~--v~-----------~~~~~~~~-----~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~  257 (416)
T 2pm9_A          207 TSPNSGI----KQQ--LS-----------VVEWHPKN-----STRVATATGSDNDPSILIWDLRNANTPLQTL  257 (416)
T ss_dssp             CCCSSCC----CCC--EE-----------EEEECSSC-----TTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred             ccccccc----CCc--eE-----------EEEECCCC-----CCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence            5210000    000  00           00012111     14788899898   9999998886 344333

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=81.49  E-value=0.62  Score=47.23  Aligned_cols=105  Identities=8%  Similarity=-0.001  Sum_probs=63.1

Q ss_pred             CCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecc----------eeeEEEEEEccccceeeecCCCCCCcc
Q 042769           40 GEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGS----------KTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        40 ~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gs----------k~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      ..|+.+|.+|. +|+..-.+..+. .. .-+++.|| .+|+++          .++++.++|++|++++.+...+.... 
T Consensus        28 ~~d~~v~v~D~~t~~~~~~i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~-  104 (361)
T 2oiz_A           28 LTESRVHVYDYTNGKFLGMVPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV-  104 (361)
T ss_dssp             GGGCEEEEEETTTCCEEEEEECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC-
T ss_pred             cccCeEEEEECCCCeEEEEecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc-
Confidence            34788899997 665532222211 11 23455577 689976          47899999999999998876542000 


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc--cceeecccCCCCCceee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT--DYTLQSFEPNSDNVSWS  169 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~--d~~l~a~d~~~g~~~Wn  169 (549)
                       . ....           +.  . -..++..      ..||+...  +..|..+|.+++++.-.
T Consensus       105 -~-~g~~-----------p~--~-i~~spdg------~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          105 -Q-GLNY-----------DG--L-FRQTTDG------KFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             -C-BCCC-----------GG--G-EEECTTS------SEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             -c-cCCC-----------cc--e-EEECCCC------CEEEEECCCCCCeEEEEECCCCcEEEE
Confidence             0 0000           00  0 0122212      58999863  68999999999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=81.47  E-value=1  Score=45.15  Aligned_cols=70  Identities=10%  Similarity=0.095  Sum_probs=49.2

Q ss_pred             ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccc
Q 042769           75 AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDY  154 (549)
Q Consensus        75 ~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~  154 (549)
                      .++.||.|+++..-|..+|+.+.++.......       ..                -...+..    ....++.|..|+
T Consensus       168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v-------~~----------------~~~~~~~----~g~~l~sgs~Dg  220 (354)
T 2pbi_B          168 QILTASGDGTCALWDVESGQLLQSFHGHGADV-------LC----------------LDLAPSE----TGNTFVSGGCDK  220 (354)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCE-------EE----------------EEECCCS----SCCEEEEEETTS
T ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe-------EE----------------EEEEeCC----CCCEEEEEeCCC
Confidence            68889999999999999999988876543110       00                0011111    125899999999


Q ss_pred             eeecccCCCCCceeeee
Q 042769          155 TLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       155 ~l~a~d~~~g~~~Wn~~  171 (549)
                      +|+..|.++|+..-.+.
T Consensus       221 ~v~~wd~~~~~~~~~~~  237 (354)
T 2pbi_B          221 KAMVWDMRSGQCVQAFE  237 (354)
T ss_dssp             CEEEEETTTCCEEEEEC
T ss_pred             eEEEEECCCCcEEEEec
Confidence            99999999998765553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=81.12  E-value=0.74  Score=45.30  Aligned_cols=68  Identities=16%  Similarity=0.136  Sum_probs=44.9

Q ss_pred             eeeecCCcchhhhccc-------------------cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccc
Q 042769           35 FFIDCGEDWGLYAHGL-------------------LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGR   94 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-------------------~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~   94 (549)
                      .++.|+.||.++..|.                   .|.....+....---.+-++++|| .+++|+.|+++...|..+|+
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            4778889999988883                   222222222111111222344465 78999999999999999999


Q ss_pred             eeeecCCC
Q 042769           95 LIRTYGSP  102 (549)
Q Consensus        95 ~~~~~~~~  102 (549)
                      .+.++...
T Consensus       236 ~~~~~~~~  243 (372)
T 1k8k_C          236 AVATLASE  243 (372)
T ss_dssp             EEEEEECS
T ss_pred             eeEEEccC
Confidence            99888764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=81.04  E-value=0.76  Score=49.30  Aligned_cols=69  Identities=12%  Similarity=0.039  Sum_probs=47.7

Q ss_pred             cccccccce--eeecCCc----chhhhccc-cccccCCcchhhhhhcCCCcccccceee-cceee--EEEEEEcccccee
Q 042769           27 NASELTNSF--FIDCGED----WGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTL-GSKTT--TVFVLEAKTGRLI   96 (549)
Q Consensus        27 ~~~~~~~~~--~~~~~~d----~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~-Gsk~~--~~~~vda~tG~~~   96 (549)
                      +.+++++++  ++.++.|    +.||..|. +|..+ ..+.......+|+.++||..++ ++.++  ++|.+|.+||+..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            456676666  4446666    78999997 56554 2333333348899999996444 44556  8999999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=80.81  E-value=0.98  Score=49.80  Aligned_cols=65  Identities=8%  Similarity=0.071  Sum_probs=44.0

Q ss_pred             ccccccce--eeecCC-cc-----hhhhccc-cccccCCcchhhhh------------------------hcCCCccccc
Q 042769           28 ASELTNSF--FIDCGE-DW-----GLYAHGL-LGRMKLPQSIDDYV------------------------KTAPHITEEG   74 (549)
Q Consensus        28 ~~~~~~~~--~~~~~~-d~-----~ly~~~~-~g~~~~~~~~~~~v------------------------~~sP~~~~dg   74 (549)
                      .+++++++  ++.++. |+     .||..|. +|..+..+......                        -.+++++.||
T Consensus        41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg  120 (741)
T 2ecf_A           41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA  120 (741)
T ss_dssp             EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred             CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence            36677665  555555 77     8999998 56543333222211                        3678899999


Q ss_pred             c-eeecceeeEEEEEEcccc
Q 042769           75 A-VTLGSKTTTVFVLEAKTG   93 (549)
Q Consensus        75 ~-v~~Gsk~~~~~~vda~tG   93 (549)
                      . |++++. ++++.+|..+|
T Consensus       121 ~~l~~~~~-~~i~~~d~~~~  139 (741)
T 2ecf_A          121 QRLLFPLG-GELYLYDLKQE  139 (741)
T ss_dssp             SEEEEEET-TEEEEEESSSC
T ss_pred             CEEEEEeC-CcEEEEECCCC
Confidence            5 555654 99999999999

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.67  E-value=0.94  Score=46.03  Aligned_cols=76  Identities=9%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             Cccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEE
Q 042769           69 HITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL  147 (549)
Q Consensus        69 ~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (549)
                      +.++|| .+..|+.|+++...|..+|+.+.++.......       ..                ...++.      ...|
T Consensus       130 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-------~~----------------~~~~p~------~~~l  180 (393)
T 1erj_A          130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-------YS----------------LDYFPS------GDKL  180 (393)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-------EE----------------EEECTT------SSEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE-------EE----------------EEEcCC------CCEE
Confidence            345566 57789999999999999999988776543100       00                001111      1578


Q ss_pred             EEEcccceeecccCCCCCceeeeeee
Q 042769          148 FITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       148 ~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      +.++.|++|+..|.++|+....+...
T Consensus       181 ~s~s~d~~v~iwd~~~~~~~~~~~~~  206 (393)
T 1erj_A          181 VSGSGDRTVRIWDLRTGQCSLTLSIE  206 (393)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EEecCCCcEEEEECCCCeeEEEEEcC
Confidence            99999999999999999887776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=80.65  E-value=1.7  Score=40.77  Aligned_cols=58  Identities=12%  Similarity=0.034  Sum_probs=31.8

Q ss_pred             ecCCcchhhhccccccccCCcchhh-hhhcCCCcccccceeecceeeEEEEEEccccce
Q 042769           38 DCGEDWGLYAHGLLGRMKLPQSIDD-YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRL   95 (549)
Q Consensus        38 ~~~~d~~ly~~~~~g~~~~~~~~~~-~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~   95 (549)
                      .++.++.|+.++..+.....+.... .--.+-+++.||.+|++..++.++.+|++++..
T Consensus        41 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           41 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             ECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             ccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            3356777777776332221111111 011122355688899987778899999877654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=80.53  E-value=0.97  Score=45.32  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh----hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD----YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~----~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.|+.|+.+...|. .|...-.|....    .+.-+|.-. ...++.|+.|+++..-|..+|+.+.++.......   
T Consensus       168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v---  243 (354)
T 2pbi_B          168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET-GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV---  243 (354)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS-CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE---
T ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe---
Confidence            3688889999888887 555433332211    122333222 3479999999999999999999988876543100   


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCcee
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSW  168 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~W  168 (549)
                          ..                -..+|.      ...+..++.|++|+..|.+++...-
T Consensus       244 ----~~----------------v~~~p~------~~~l~s~s~D~~v~lwd~~~~~~~~  276 (354)
T 2pbi_B          244 ----NS----------------VRYYPS------GDAFASGSDDATCRLYDLRADREVA  276 (354)
T ss_dssp             ----EE----------------EEECTT------SSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ----EE----------------EEEeCC------CCEEEEEeCCCeEEEEECCCCcEEE
Confidence                00                001221      2588999999999999987776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	549
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-12
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-11
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-10
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-10
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-10
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	9e-10
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-09
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-09
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-09
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-09
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-09
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-09
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-09
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	5e-09
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	8e-09
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-08
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-08
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-08
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-08
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-08
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-08
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-08
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-08
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-08
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-08
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	5e-08
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-08
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	7e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	7e-08
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-08
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-08
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-08
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-07
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-07
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-07
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-07
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-07
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-07
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	6e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-07
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-07
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-06
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-06
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-06
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-06
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	9e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	5e-05
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	0.002

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 8e-12
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGV-END 472
            I KG  G V   G Y G  VAVK +       AF    +++   +H N+V+  GV   +
Sbjct: 14  TIGKGEFGDV-MLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEE 72

Query: 473 KDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKVIIRD 528
           K  +Y+  E     SL D ++    S   SV G D   +  ++    ++       + RD
Sbjct: 73  KGGLYIVTEYMAKGSLVDYLR----SRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD 128

Query: 529 LS----LWKADGHP 538
           L+    L   D   
Sbjct: 129 LAARNVLVSEDNVA 142

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 8e-11
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 22/158 (13%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIY----EGRPVAVKRLVRALHDVAFKEIQN---LIASDQ 459
            L +++ E+  G+ G+V  +G+Y    +   VA+K L +       +E+     ++    
Sbjct: 9   NLLIADIELGCGNFGSV-RQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD 67

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR 518
           +P IVR  GV   +    L +E      L   +                    + +  + 
Sbjct: 68  NPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLV-----GKREEIPVSNVAELLHQVSMG 121

Query: 519 LDSV---KVIIRDLS----LWKADGHPSPLLLSLMRLV 549
           +  +     + RDL+    L     +       L + +
Sbjct: 122 MKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL 159

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 1e-10
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQ-NLIASDQHPNIVRWYGVEND 472
            I KG  G V + G + G  VAVK          F+E +       +H NI+ +   +N 
Sbjct: 10  SIGKGRFGEV-WRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNK 68

Query: 473 KDFVYLSLERCTC-----SLDDLIQTYSDSSCNSVFGEDQATRAMI----EYKLRLDSVK 523
            +  +  L   +      SL D +  Y+ +    +         +     E         
Sbjct: 69  DNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA 128

Query: 524 VIIRDLS----LWKADGHP 538
           +  RDL     L K +G  
Sbjct: 129 IAHRDLKSKNILVKKNGTC 147

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 16/135 (11%)

Query: 414 EIAKGSNGTVVYEGIYE-GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVEN 471
           E+  G  G V   G +     VA+K +   ++ +  F E   ++ +  H  +V+ YGV  
Sbjct: 11  ELGTGQFGVV-KYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT 69

Query: 472 DKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDSVKVIIR 527
            +  +++  E      L + ++          F   Q     + + E    L+S + + R
Sbjct: 70  KQRPIFIITEYMANGCLLNYLRE-----MRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 124

Query: 528 DLS----LWKADGHP 538
           DL+    L    G  
Sbjct: 125 DLAARNCLVNDQGVV 139

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 8e-10
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVRWYG 468
           E+  G+ G V ++  ++  G  +A K +   +      +I     ++     P IV +YG
Sbjct: 13  ELGAGNGGVV-FKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYG 71

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD----SVK 523
                  + + +E     SLD +++            E    +  I     L       K
Sbjct: 72  AFYSDGEISICMEHMDGGSLDQVLKK------AGRIPEQILGKVSIAVIKGLTYLREKHK 125

Query: 524 VIIRDLS----LWKADGHP 538
           ++ RD+     L  + G  
Sbjct: 126 IMHRDVKPSNILVNSRGEI 144

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 9e-10
 Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 24/153 (15%)

Query: 405 VGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLIASDQHPN 462
           +    V++  +  G NG V  +   +      A+K L       A +E++    + Q P+
Sbjct: 10  IDDYKVTSQVLGLGINGKV-LQIFNKRTQEKFALKMLQDC--PKARREVELHWRASQCPH 66

Query: 463 IVRWYGV----ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKL 517
           IVR   V       +  + + +E      L   IQ   D +    F E +A+  M     
Sbjct: 67  IVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA----FTEREASEIMKSIGE 122

Query: 518 RLD---SVKVIIRDLSLWKADGHPSPLLLSLMR 547
            +    S+ +  RD+        P  LL +  R
Sbjct: 123 AIQYLHSINIAHRDV-------KPENLLYTSKR 148

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 23/150 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALH------DVAFKEIQNLIASDQHPNIVR 465
            + KGS G V +   ++   +  A+K L + +       +    E + L  + +HP +  
Sbjct: 9   MLGKGSFGKV-FLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 67

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKL---RLDS 521
            +     K+ ++  +E      L   IQ+         F   +AT    E  L    L S
Sbjct: 68  MFCTFQTKENLFFVMEYLNGGDLMYHIQS------CHKFDLSRATFYAAEIILGLQFLHS 121

Query: 522 VKVIIRDLS----LWKADGHPSPLLLSLMR 547
             ++ RDL     L   DGH       + +
Sbjct: 122 KGIVYRDLKLDNILLDKDGHIKIADFGMCK 151

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 401 QGRNVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN---LI 455
           Q  ++  ++     +  G+   V      +   + VA+K + +   +     ++N   ++
Sbjct: 3   QAEDIRDIYDFRDVLGTGAFSEV-ILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 456 ASDQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIE 514
              +HPNIV    +      +YL ++  +   L D I           + E  A+R + +
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE------KGFYTERDASRLIFQ 115

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 414 EIAKGSNGTVVYEGIYE-GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVEN 471
           EI  G  G V + G +     VA+K +   A+ +  F E   ++    HP +V+ YGV  
Sbjct: 12  EIGSGQFGLV-HLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCL 70

Query: 472 DKDFVYLSLERCTC-SLDDLIQT 493
           ++  + L  E      L D ++T
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLRT 93

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-----VRALHDVAFKEIQNLIASDQHPNIVRW 466
           +I +G+ G V Y+   +  G  VA+K++        +   A +EI  L+    HPNIV+ 
Sbjct: 9   KIGEGTYGVV-YKARNKLTGEVVALKKIRLDTETEGVPSTAIREIS-LLKELNHPNIVKL 66

Query: 467 YGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVK 523
             V + ++ +YL  E     L   +    D+S  +          + +    L    S +
Sbjct: 67  LDVIHTENKLYLVFEFLHQDLKKFM----DASALTGIPLPLIKSYLFQLLQGLAFCHSHR 122

Query: 524 VIIRDL 529
           V+ RDL
Sbjct: 123 VLHRDL 128

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 22/140 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHD-----VAFKEIQNLIASDQHPNIVRW 466
            + +GS  TV          R  A+K L +               +++++   HP  V+ 
Sbjct: 15  ILGEGSFSTV-VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL 73

Query: 467 YGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDSV 522
           Y    D + +Y  L       L   I+          F E      T  ++     L   
Sbjct: 74  YFTFQDDEKLYFGLSYAKNGELLKYIR------KIGSFDETCTRFYTAEIVSALEYLHGK 127

Query: 523 KVIIRDLS----LWKADGHP 538
            +I RDL     L   D H 
Sbjct: 128 GIIHRDLKPENILLNEDMHI 147

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 26/128 (20%), Positives = 39/128 (30%), Gaps = 15/128 (11%)

Query: 414 EIAKGSNGTVVYEGIY-------EGRPVAVKRLVRALH----DVAFKEIQNLIASDQHPN 462
            +  G+ G V  E              VAVK L  + H    +    E++ L     H N
Sbjct: 30  TLGAGAFGKV-VEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 463 IVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDS 521
           IV   G         +  E C    L + ++   DS   S            E  L L+ 
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDD--ELALDLED 146

Query: 522 VKVIIRDL 529
           +      +
Sbjct: 147 LLSFSYQV 154

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL---VRALHDVAFKEIQNLIASDQHPNIVRWYG 468
           +I +G++GTV Y  +    G+ VA++++    +   ++   EI  ++  +++PNIV +  
Sbjct: 27  KIGQGASGTV-YTAMDVATGQEVAIRQMNLQQQPKKELIINEIL-VMRENKNPNIVNYLD 84

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIR 527
                D +++ +E     SL D++               +  +A+ E+   L S +VI R
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQAL-EF---LHSNQVIHR 140

Query: 528 DLS----LWKADGHP 538
           D+     L   DG  
Sbjct: 141 DIKSDNILLGMDGSV 155

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 56.2 bits (135), Expect = 4e-09
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYG 468
           E+  G+ G V +       G   A K ++       +   KEIQ + +  +HP +V  + 
Sbjct: 33  ELGTGAFGVV-HRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM-SVLRHPTLVNLHD 90

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKV 524
              D + + +  E  +   L + +        ++   ED+A   M +    L        
Sbjct: 91  AFEDDNEMVMIYEFMSGGELFEKVA-----DEHNKMSEDEAVEYMRQVCKGLCHMHENNY 145

Query: 525 IIRDL 529
           +  DL
Sbjct: 146 VHLDL 150

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 5e-09
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 13/126 (10%)

Query: 414 EIAKGSNGTVVYEGI-------YEGRPVAVKRLVRALHDVA----FKEIQNLIASDQHPN 462
            +  G+ G V                 VAVK L              E++ +     H N
Sbjct: 44  VLGSGAFGKV-MNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 102

Query: 463 IVRWYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDS 521
           IV   G       +YL  E C    L + +++  +         +   R   E  L + +
Sbjct: 103 IVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLT 162

Query: 522 VKVIIR 527
            + ++ 
Sbjct: 163 FEDLLC 168

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (131), Expect = 8e-09
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 387 DPFL--DLNKLVRGGAQGRNVGKLFVSNTEIAKGSNGTVVYEGIY-----EGRPVAVKRL 439
           DPF   D N+ VR  A+  ++  + +    I  G  G V   G           VA+K L
Sbjct: 5   DPFTFEDPNEAVREFAKEIDISCVKIEQ-VIGAGEFGEV-CSGHLKLPGKREIFVAIKTL 62

Query: 440 VRALHDVAFKEIQN---LIASDQHPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSD 496
                +   ++  +   ++    HPN++   GV      V +  E       D     +D
Sbjct: 63  KSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND 122

Query: 497 SSCNSVFGEDQA---TRAMIEYKLRLDSVKVIIRDL 529
                     Q     R +      L  +  + RDL
Sbjct: 123 GQFT----VIQLVGMLRGIAAGMKYLADMNYVHRDL 154

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE----GRPVAVKRLVRALHDVAFK-----EIQNLIAS 457
            L + + E+  G+ GTV  +G Y+     + VAVK L    +D A K     E   ++  
Sbjct: 7   LLTLEDKELGSGNFGTV-KKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEAN-VMQQ 64

Query: 458 DQHPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYK 516
             +P IVR  G+   + +  L +E      L+  +Q        ++          ++Y 
Sbjct: 65  LDNPYIVRMIGICEAESW-MLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKY- 122

Query: 517 LRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRLV 549
             L+    + RDL+    L     +       L + +
Sbjct: 123 --LEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL 157

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 414 EIAKGSNGTVVYEGIYEG----RPVAVKRLVRALHDVAFK----EIQNLIASDQHPNIVR 465
            I +G+ G V  +   +        A+KR+         +    E++ L     HPNI+ 
Sbjct: 17  VIGEGNFGQV-LKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 75

Query: 466 WYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKV 524
             G    + ++YL++E     +L D ++       +  F    +T + +  +  L     
Sbjct: 76  LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 135

Query: 525 IIRDL 529
           + R +
Sbjct: 136 VARGM 140

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (129), Expect = 1e-08
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVA--FKEIQNLIASDQHPNIVRWYGV 469
           ++  G  G V YEG+++     VAVK L     +V    KE   ++   +HPN+V+  GV
Sbjct: 24  KLGGGQYGEV-YEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA-VMKEIKHPNLVQLLGV 81

Query: 470 ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRDL 529
              +   Y+  E  T           +    S          +      L+    I RDL
Sbjct: 82  CTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDL 141

Query: 530 S 530
           +
Sbjct: 142 A 142

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 19/136 (13%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGV-- 469
           ++ +G    V +E I       V VK L         +EI+ L      PNI+    +  
Sbjct: 42  KLGRGKYSEV-FEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVK 100

Query: 470 ENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVIIRD 528
           +       L  E         L QT           +      M E    LD        
Sbjct: 101 DPVSRTPALVFEHVNNTDFKQLYQT---------LTDYDIRFYMYEILKALD----YCHS 147

Query: 529 LSLWKADGHPSPLLLS 544
           + +   D  P  +++ 
Sbjct: 148 MGIMHRDVKPHNVMID 163

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRAL---HDVAFKEIQNLIASDQHPNIVRWYG 468
           E+  G+ G V +  + +  GR    K +             EI  ++    HP ++  + 
Sbjct: 36  ELGSGAFGVV-HRCVEKATGRVFVAKFINTPYPLDKYTVKNEIS-IMNQLHHPKLINLHD 93

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKV 524
              DK  + L LE  +   L D I        +    E +    M +    L       +
Sbjct: 94  AFEDKYEMVLILEFLSGGELFDRIAAE-----DYKMSEAEVINYMRQACEGLKHMHEHSI 148

Query: 525 IIRDL 529
           +  D+
Sbjct: 149 VHLDI 153

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDV---AFKEIQNLIASDQHPNIVRWYG 468
           E+  G+ G V Y+   +      A K +     +       EI  L AS  HPNIV+   
Sbjct: 19  ELGDGAFGKV-YKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL-ASCDHPNIVKLLD 76

Query: 469 VENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKV 524
               ++ +++ +E C   ++D ++             E Q      +    L+     K+
Sbjct: 77  AFYYENNLWILIEFCAGGAVDAVML-----ELERPLTESQIQVVCKQTLDALNYLHDNKI 131

Query: 525 IIRDLS----LWKADGHP 538
           I RDL     L+  DG  
Sbjct: 132 IHRDLKAGNILFTLDGDI 149

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 414 EIAKGSNGTVVYEGIYE-GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVEN 471
            +  G  G V + G Y     VAVK L   ++   AF    NL+   QH  +VR Y V  
Sbjct: 20  RLGAGQFGEV-WMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT 78

Query: 472 DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKVIIRD 528
            +  +Y+  E         +  +  +        ++      +    +        I RD
Sbjct: 79  QEP-IYIITEYMEN---GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134

Query: 529 LS 530
           L 
Sbjct: 135 LR 136

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVA-----FKEIQNLIASDQHPNIVRW 466
            + KG  G V Y    +     +A+K L +A  + A      +    + +  +HPNI+R 
Sbjct: 13  PLGKGKFGNV-YLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRL 71

Query: 467 YGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SV 522
           YG  +D   VYL LE     ++   +Q        S F E +    + E    L    S 
Sbjct: 72  YGYFHDATRVYLILEYAPLGTVYRELQKL------SKFDEQRTATYITELANALSYCHSK 125

Query: 523 KVIIRDLS----LWKADGHP 538
           +VI RD+     L  + G  
Sbjct: 126 RVIHRDIKPENLLLGSAGEL 145

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 415 IAKGSNGTVVYEGIY------EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVR 465
           I  G  G V Y+G+       +  PVA+K L     +    +      ++    H NI+R
Sbjct: 15  IGAGEFGEV-YKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR 73

Query: 466 WYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDSV 522
             GV +    + +  E       D          +  F   Q     R +      L ++
Sbjct: 74  LEGVISKYKPMMIITEYMENGALDKFLR----EKDGEFSVLQLVGMLRGIAAGMKYLANM 129

Query: 523 KVIIRDLS 530
             + RDL+
Sbjct: 130 NYVHRDLA 137

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 16/125 (12%)

Query: 414 EIAKGSNGTVVYEGIYE-GRPVAVKRL-----VRALHDVAFKEIQNLIASDQHPNIVRWY 467
           +I +G+ G V Y+     G   A+K++        +     +EI  ++   +H NIV+ Y
Sbjct: 9   KIGEGTYGVV-YKAQNNYGETFALKKIRLEKEDEGIPSTTIREIS-ILKELKHSNIVKLY 66

Query: 468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAM---IEYKLRLDSVKV 524
            V + K  + L  E     L  L+       C        A   +   +         +V
Sbjct: 67  DVIHTKKRLVLVFEHLDQDLKKLLD-----VCEGGLESVTAKSFLLQLLNGIAYCHDRRV 121

Query: 525 IIRDL 529
           + RDL
Sbjct: 122 LHRDL 126

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 15/128 (11%)

Query: 414 EIAKGSNGTVVYEGIY---------EGRPVAVKRLVRALHDVAFK----EIQNLIASDQH 460
            + +G+ G V                   VAVK L     +        E++ +    +H
Sbjct: 20  PLGEGAFGQV-VLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKH 78

Query: 461 PNIVRWYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRL 519
            NI+   G       +Y+ +E  +  +L + +Q          +         +  K  +
Sbjct: 79  KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 138

Query: 520 DSVKVIIR 527
                + R
Sbjct: 139 SCAYQVAR 146

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 414 EIAKGSNGTVVYEGIYEGRPVAVKRL-VRALHDVAFKEIQN---LIASDQHPNIVRWYGV 469
            I  GS GTV Y+G +    VAVK L V A      +  +N   ++   +H NI+ + G 
Sbjct: 15  RIGSGSFGTV-YKGKW-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72

Query: 470 ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSV---KVI 525
                 + +  + C   SL   +         + F   +      +    +D +    +I
Sbjct: 73  S-TAPQLAIVTQWCEGSSLYHHLH-----IIETKFEMIKLIDIARQTAQGMDYLHAKSII 126

Query: 526 IRDLS----LWKADGHP 538
            RDL         D   
Sbjct: 127 HRDLKSNNIFLHEDLTV 143

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 407 KLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRL--VRALHDVAFKEIQN---LIASDQ 459
           KLF    EI  GS G V Y          VA+K++       +  +++I      +   +
Sbjct: 15  KLFSDLREIGHGSFGAV-YFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTCSLDDLIQ 492
           HPN +++ G    +   +L +E C  S  DL++
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLE 106

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 24/146 (16%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEI----QNLIASDQHPNIVR-- 465
            I  GS G    +   +  G+ +  K L       A K++     NL+   +HPNIVR  
Sbjct: 11  TIGTGSYGRC-QKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY 69

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIE--------YK 516
              ++     +Y+ +E C    L  +I   +         E+   R M +        ++
Sbjct: 70  DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKE--RQYLDEEFVLRVMTQLTLALKECHR 127

Query: 517 LRLDSVKVIIRDLS----LWKADGHP 538
                  V+ RDL           + 
Sbjct: 128 RSDGGHTVLHRDLKPANVFLDGKQNV 153

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVE 470
           +I  GS G + Y G     G  VA+K   V+  H     E +          I       
Sbjct: 14  KIGSGSFGDI-YLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCG 72

Query: 471 NDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKVIIR 527
            + D+  + +E    SL+DL        C+  F          +   R++   S   I R
Sbjct: 73  AEGDYNVMVMELLGPSLEDLFN-----FCSRKFSLKTVLLLADQMISRIEYIHSKNFIHR 127

Query: 528 DLS 530
           D+ 
Sbjct: 128 DVK 130

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 23/147 (15%)

Query: 414 EIAKGSNGTVVYEGIY-------EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNI 463
           E+ +GS G V YEG+            VA+K +  A       E  N   ++      ++
Sbjct: 27  ELGQGSFGMV-YEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 85

Query: 464 VRWYGVENDKDFVYLSLERCT-CSLDDLIQTYSDSSCN--SVFGEDQATRAMIEYKL--- 517
           VR  GV +      + +E  T   L   +++   +  N   +     +    +  ++   
Sbjct: 86  VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG 145

Query: 518 --RLDSVKVIIRDL----SLWKADGHP 538
              L++ K + RDL     +   D   
Sbjct: 146 MAYLNANKFVHRDLAARNCMVAEDFTV 172

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 16/131 (12%)

Query: 414 EIAKGSNGTVVYEGIY-------EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNI 463
           +I +G+ G V ++              VAVK L          + Q    L+A   +PNI
Sbjct: 20  DIGEGAFGRV-FQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI 78

Query: 464 VRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYK----LR 518
           V+  GV      + L  E      L++ +++ S  +  S+   D +TRA +       L 
Sbjct: 79  VKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLS 138

Query: 519 LDSVKVIIRDL 529
                 I R +
Sbjct: 139 CAEQLCIARQV 149

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 7e-08
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 20/138 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVRWYG 468
            + +G+ G V    +       VAVK +         + I+    +     H N+V++YG
Sbjct: 12  TLGEGAYGEV-QLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYG 70

Query: 469 VENDKDFVYLSLERCTCSL-DDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKV 524
              + +  YL LE C+     D I+       +    E  A R   +    +     + +
Sbjct: 71  HRREGNIQYLFLEYCSGGELFDRIEP------DIGMPEPDAQRFFHQLMAGVVYLHGIGI 124

Query: 525 IIRDL----SLWKADGHP 538
             RD+     L     + 
Sbjct: 125 THRDIKPENLLLDERDNL 142

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 8e-08
 Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 20/128 (15%)

Query: 415 IAKGSNGTVVYEGIYE--GRPVAVKRLVRA--------LHDVAFKEIQNLIASDQHPNIV 464
           + +G   TV Y+   +   + VA+K++           ++  A +EI+ L+    HPNI+
Sbjct: 6   LGEGQFATV-YKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIK-LLQELSHPNII 63

Query: 465 RWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDS 521
                   K  + L  +     L+ +I+       + V             ++    L  
Sbjct: 64  GLLDAFGHKSNISLVFDFMETDLEVIIK-----DNSLVLTPSHIKAYMLMTLQGLEYLHQ 118

Query: 522 VKVIIRDL 529
             ++ RDL
Sbjct: 119 HWILHRDL 126

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 9e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 22/129 (17%)

Query: 415 IAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGV--- 469
           I  GS G V Y+      G  VA+K++++       +E+Q ++    H NIVR       
Sbjct: 28  IGNGSFGVV-YQAKLCDSGELVAIKKVLQD-KRFKNRELQ-IMRKLDHCNIVRLRYFFYS 84

Query: 470 ---ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAM------IEYKLRLD 520
              + D+ ++ L L+    ++  + + YS +              M      + Y   + 
Sbjct: 85  SGEKKDEVYLNLVLDYVPETVYRVARHYSRA--KQTLPVIYVKLYMYQLFRSLAY---IH 139

Query: 521 SVKVIIRDL 529
           S  +  RD+
Sbjct: 140 SFGICHRDI 148

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 23/133 (17%)

Query: 414 EIAKGSNGTVVYEGIY-----EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVR 465
            I +G  G V ++GIY         VA+K       D   ++       +    HP+IV+
Sbjct: 14  CIGEGQFGDV-HQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVK 72

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKL-----RL 519
             GV  + + V++ +E CT   L   +           +  D A+  +  Y+L      L
Sbjct: 73  LIGVITE-NPVWIIMELCTLGELRSFL-------QVRKYSLDLASLILYAYQLSTALAYL 124

Query: 520 DSVKVIIRDLSLW 532
           +S + + RD++  
Sbjct: 125 ESKRFVHRDIAAR 137

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVE 470
           ++ +G  G V +  +     +    K + V+    V  K+  +++   +H NI+  +   
Sbjct: 12  DLGRGEFGIV-HRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESF 70

Query: 471 NDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDSVKVII 526
              + + +  E  +   + + I T +         E +       + E    L S  +  
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTSAFE-----LNEREIVSYVHQVCEALQFLHSHNIGH 125

Query: 527 RDL 529
            D+
Sbjct: 126 FDI 128

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 405 VGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFK-EIQNLIASDQHP 461
           VG  +     I +GS G + +EG      + VA+K   R       + E +         
Sbjct: 3   VGVHYKVGRRIGEGSFGVI-FEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCT 61

Query: 462 NIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD- 520
            I   Y    +     L ++    SL+DL+       C   F       A  +   R+  
Sbjct: 62  GIPNVYYFGQEGLHNVLVIDLLGPSLEDLLD-----LCGRKFSVKTVAMAAKQMLARVQS 116

Query: 521 --SVKVIIRDLS 530
                ++ RD+ 
Sbjct: 117 IHEKSLVYRDIK 128

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 24/132 (18%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVR 465
            +  G    V +        R VAVK L   L      +    +E QN  A+  HP IV 
Sbjct: 14  ILGFGGMSEV-HLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNA-AALNHPAIVA 71

Query: 466 WYGV----ENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKL 517
            Y             Y+ +E     +L D++               +A        +   
Sbjct: 72  VYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH------TEGPMTPKRAIEVIADACQALN 125

Query: 518 RLDSVKVIIRDL 529
                 +I RD+
Sbjct: 126 FSHQNGIIHRDV 137

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 25/152 (16%)

Query: 404 NVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQN---LIASD 458
           +VG  + + + I +G+ G V            VA+K++    H    +       ++   
Sbjct: 5   DVGPRYTNLSYIGEGAYGMV-CSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF 63

Query: 459 QHPNIVRWYGVENDKDF-----VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA---TR 510
           +H NI+    +           VYL        L  L++T            D       
Sbjct: 64  RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQH-------LSNDHICYFLY 116

Query: 511 AMIEYKLRLDSVKVIIRDLS----LWKADGHP 538
            ++     + S  V+ RDL     L       
Sbjct: 117 QILRGLKYIHSANVLHRDLKPSNLLLNTTCDL 148

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHD-----VAFKEIQNLIASDQHPNIVRW 466
            +  GS G V +       GR  A+K L + +           + + +++   HP I+R 
Sbjct: 11  TLGTGSFGRV-HLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRM 69

Query: 467 YGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVK 523
           +G   D   +++ ++         +        +  F    A     E  L L+   S  
Sbjct: 70  WGTFQDAQQIFMIMDYIEGGELFSLLR-----KSQRFPNPVAKFYAAEVCLALEYLHSKD 124

Query: 524 VIIRDLS----LWKADGHP 538
           +I RDL     L   +GH 
Sbjct: 125 IIYRDLKPENILLDKNGHI 143

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 25/134 (18%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL------------VRALHDVAFKEIQNLIASDQ 459
            + +G +  V    I++   +  AVK +            V+ L +   KE+  L     
Sbjct: 10  ILGRGVSSVV-RRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSG 68

Query: 460 HPNIVRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR 518
           HPNI++         F +L  +      L D +             E +  + M      
Sbjct: 69  HPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE------KVTLSEKETRKIMRALLEV 122

Query: 519 LD---SVKVIIRDL 529
           +     + ++ RDL
Sbjct: 123 ICALHKLNIVHRDL 136

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 21/130 (16%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHD--------VAFKEIQNLIASDQHPNI 463
            I +G  G V Y       G+  A+K L +            +  + + +L+++   P I
Sbjct: 11  IIGRGGFGEV-YGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFI 69

Query: 464 VRWYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD-- 520
           V      +  D +   L+      L   +        + VF E        E  L L+  
Sbjct: 70  VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQ------HGVFSEADMRFYAAEIILGLEHM 123

Query: 521 -SVKVIIRDL 529
            +  V+ RDL
Sbjct: 124 HNRFVVYRDL 133

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 6e-07
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 404 NVGKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAFKEIQ--------N 453
           NV   + +  E+  G    V  +   +  G   A K + +     + + +         +
Sbjct: 7   NVDDYYDTGEELGSGQFAVV-KKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65

Query: 454 LIASDQHPNIVRWYGVENDKDFVYLSLERCTC 485
           ++   QHPN++  + V  +K  V L LE    
Sbjct: 66  ILKEIQHPNVITLHEVYENKTDVILILELVAG 97

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-----VRALHDVAFKEIQNLIASDQHPNIVRW 466
           +I +G+ GTV ++         VA+KR+        +   A +EI  L    +H NIVR 
Sbjct: 9   KIGEGTYGTV-FKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL-KELKHKNIVRL 66

Query: 467 YGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDSVKVII 526
           + V +    + L  E C   L     + +      +         +++      S  V+ 
Sbjct: 67  HDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIV--KSFLFQLLKGLGFCHSRNVLH 124

Query: 527 RDL 529
           RDL
Sbjct: 125 RDL 127

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 8e-07
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 27/157 (17%)

Query: 414 EIAKGSNGTV--VYEGIYEGRPVAVKRL-----VRALHDVAFKEIQNL--IASDQHPNIV 464
           EI +G+ G V    +    GR VA+KR+        +     +E+  L  + + +HPN+V
Sbjct: 14  EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVV 73

Query: 465 RWYGV-----ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR- 518
           R + V      + +  + L  E     L   +    +          +  + M+   LR 
Sbjct: 74  RLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVP-----TETIKDMMFQLLRG 128

Query: 519 ---LDSVKVIIRDLS----LWKADGHPSPLLLSLMRL 548
              L S +V+ RDL     L  + G        L R+
Sbjct: 129 LDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI 165

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 406 GKLFVSNTEIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVA----FKEIQNLIASDQ 459
           G+    + EI +GS  TV Y+G+       VA   L       +    FKE   ++   Q
Sbjct: 8   GRFLKFDIEIGRGSFKTV-YKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQ 66

Query: 460 HPNIVRWYGV----ENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIE 514
           HPNIVR+Y         K  + L  E  T  +L   ++ +       +    +     ++
Sbjct: 67  HPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQ 126

Query: 515 YKLRLDSVKVIIRDL 529
           + L   +  +I RDL
Sbjct: 127 F-LHTRTPPIIHRDL 140

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)

Query: 414 EIAKGSNGTVVYEGIYE-------GRPVAVKRLVRAL----HDVAFKEIQNLIASDQHPN 462
            + +G+ G V  E            R VAVK L        H     E++ LI    H N
Sbjct: 20  PLGRGAFGQV-IEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 78

Query: 463 IVRWYGV-ENDKDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD 520
           +V   G        + + +E C   +L   +++  +         +   +  +  +  + 
Sbjct: 79  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 138

Query: 521 SVKVIIRDLS------LWKADGHPSPLLLS 544
               + + +           D     +LLS
Sbjct: 139 YSFQVAKGMEFLASRKCIHRDLAARNILLS 168

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 21/134 (15%), Positives = 46/134 (34%), Gaps = 14/134 (10%)

Query: 414 EIAKGSNGTVVYEGIYE-GRPVAVKRL-VRALHDVAFKEIQNLIASDQHPNIVRWYGVEN 471
           ++ +G  G V + G +     VA+K L    +   AF +   ++   +H  +V+ Y V +
Sbjct: 24  KLGQGCFGEV-WMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 82

Query: 472 DKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD---SVKVIIRD 528
           ++  +Y+  E  +         +            Q      +    +     +  + RD
Sbjct: 83  EEP-IYIVTEYMSKGSLLD---FLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD 138

Query: 529 LS----LWKADGHP 538
           L     L   +   
Sbjct: 139 LRAANILVGENLVC 152

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 25/154 (16%)

Query: 414 EIAKGSNGTVVYEGIY-----EGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPN 462
           ++  GS G V   G +     +   VAVK L   +       D   +E+   + S  H N
Sbjct: 15  KLGDGSFGVV-RRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVN-AMHSLDHRN 72

Query: 463 IVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD-- 520
           ++R YGV        ++      SL D ++ +        F     +R  ++    +   
Sbjct: 73  LIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-----FLLGTLSRYAVQVAEGMGYL 127

Query: 521 -SVKVIIRDLS----LWKADGHPSPLLLSLMRLV 549
            S + I RDL+    L             LMR +
Sbjct: 128 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 161

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 20/131 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRAL---------HDVAFKEIQNLIA-SDQHP 461
            +  G  G+V Y GI      PVA+K + +                 E+  L   S    
Sbjct: 11  LLGSGGFGSV-YSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFS 69

Query: 462 NIVRWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLR 518
            ++R        D   L LER     D     +   +      E+ A      ++E    
Sbjct: 70  GVIRLLDWFERPDSFVLILERPEPVQDL----FDFITERGALQEELARSFFWQVLEAVRH 125

Query: 519 LDSVKVIIRDL 529
             +  V+ RD+
Sbjct: 126 CHNCGVLHRDI 136

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL-----VRALHDVAFKEIQNLIASDQHPNIVRW 466
           +I +G+ G V ++  +   G+ VA+K++            A +EI+ L    +H N+V  
Sbjct: 17  KIGQGTFGEV-FKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL-QLLKHENVVNL 74

Query: 467 YGV--------ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLR 518
             +           K  +YL  + C   L  L+         S     +  + ++     
Sbjct: 75  IEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEI--KRVMQMLLNGLYY 132

Query: 519 LDSVKVIIRDL 529
           +   K++ RD+
Sbjct: 133 IHRNKILHRDM 143

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 414 EIAKGSNGTVV----YEGIYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPN 462
            +  G+ G V       G   G+  A+K L +A         +    E Q L    Q P 
Sbjct: 31  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 90

Query: 463 IVRWYGVENDKDFVYLSLE-RCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLDS 521
           +V  +     +  ++L L+      L   +      + + V         ++     L  
Sbjct: 91  LVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQ---IYVGEIVLALEHLHK 147

Query: 522 VKVIIRDLS----LWKADGHP 538
           + +I RD+     L  ++GH 
Sbjct: 148 LGIIYRDIKLENILLDSNGHV 168

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDVAF-----KEIQNLIASDQHPNIVRW 466
            +  G+ G V    +    G  VA+K+L R      F     +E++ L+   +H N++  
Sbjct: 25  PVGSGAYGAV-CSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELR-LLKHMRHENVIGL 82

Query: 467 YGVENDKDF------VYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIE 514
             V    +        YL +      L  L++       +   GED+    + +
Sbjct: 83  LDVFTPDETLDDFTDFYLVMPFMGTDLGKLMK-------HEKLGEDRIQFLVYQ 129

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 22/141 (15%)

Query: 414 EIAKGSNGTVVYEGIY------EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIV 464
            +  G+ GTV Y+G++         PVA+K L  A    A KEI +   ++AS  +P++ 
Sbjct: 16  VLGSGAFGTV-YKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVC 74

Query: 465 RWYGVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKL---RLDS 521
           R  G+        ++       L D ++ + D+      G        ++       L+ 
Sbjct: 75  RLLGICLTSTVQLITQLMPFGCLLDYVREHKDN-----IGSQYLLNWCVQIAKGMNYLED 129

Query: 522 VKVIIRDLS----LWKADGHP 538
            +++ RDL+    L K   H 
Sbjct: 130 RRLVHRDLAARNVLVKTPQHV 150

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-06
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 415 IAKGSNGTVVYEGIY-----EGRPVAVKRLVRALHDVAFKEIQN---LIASDQHPNIVRW 466
           I +G  G V Y G       +    AVK L R        +      ++    HPN++  
Sbjct: 35  IGRGHFGCV-YHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 93

Query: 467 YGV-ENDKDFVYLSLERC-TCSLDDLIQ 492
            G+    +    + L       L + I+
Sbjct: 94  LGICLRSEGSPLVVLPYMKHGDLRNFIR 121

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 19/129 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHDV-----AFKEIQNLIASDQHPNIVRW 466
            +  G+ G+V         G  VAVK+L R    +      ++E++ L+   +H N++  
Sbjct: 25  PVGSGAYGSV-CAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELR-LLKHMKHENVIGL 82

Query: 467 YGV------ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD 520
             V        + + VYL        L+++++    +  +  F   Q  R +      + 
Sbjct: 83  LDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLK----YIH 138

Query: 521 SVKVIIRDL 529
           S  +I RDL
Sbjct: 139 SADIIHRDL 147

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVR 465
            + KG+ G V      +  GR  A+K L + +            E + L  + +HP +  
Sbjct: 12  LLGKGTFGKV-ILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL-QNTRHPFLTA 69

Query: 466 WYGVENDKDFVYLSLERCTC-SLDDLIQTYSDSSCNSVFGEDQA---TRAMIEYKLRLDS 521
                   D +   +E      L   +          VF E++A      ++     L S
Sbjct: 70  LKYAFQTHDRLCFVMEYANGGELFFHLSR------ERVFTEERARFYGAEIVSALEYLHS 123

Query: 522 VKVIIRDL 529
             V+ RD+
Sbjct: 124 RDVVYRDI 131

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 38/152 (25%), Positives = 54/152 (35%), Gaps = 24/152 (15%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRLVRALHD-----VAFKEIQNLIASDQHPNIVRW 466
            I  G+ G V          R VA+K+L R   +      A++E+  L+    H NI+  
Sbjct: 24  PIGSGAQGIV-CAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELV-LMKCVNHKNIISL 81

Query: 467 YGV------ENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKLRLD 520
             V        +   VYL +E    +L  +IQ   D    S          M+     L 
Sbjct: 82  LNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYL-----LYQMLCGIKHLH 136

Query: 521 SVKVIIRDLSL----WKADGHPSPLLLSLMRL 548
           S  +I RDL       K+D     L   L R 
Sbjct: 137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 168

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 18/127 (14%)

Query: 414 EIAKGSNGTVVYEGIYE--GRPVAVKRL----VRALHDVA-FKEIQNLIASDQHPNIVRW 466
            +  GS G V     ++  G   A+K L    V  L  +      + ++ +   P +V+ 
Sbjct: 48  TLGTGSFGRV-MLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKL 106

Query: 467 YGVENDKDFV-YLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEYKL---RLDSV 522
                D   +  +        +   ++          F E  A     +  L    L S+
Sbjct: 107 EFSFKDNSNLYMVMEYVAGGEMFSHLRR------IGRFSEPHARFYAAQIVLTFEYLHSL 160

Query: 523 KVIIRDL 529
            +I RDL
Sbjct: 161 DLIYRDL 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	549
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.86
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.85
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.85
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.84
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.84
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.84
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.83
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.83
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.83
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.83
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.83
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.83
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.82
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.82
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.82
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.82
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.81
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.81
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.81
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.81
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.81
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.81
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.81
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.81
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.8
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.8
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.8
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.8
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.79
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.79
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.79
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.78
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.77
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.77
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.77
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.77
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.76
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.76
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.76
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.76
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.75
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.75
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.75
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.75
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.75
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.75
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.74
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.74
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.74
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.73
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.73
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.73
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.72
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.72
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.72
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.71
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.7
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.7
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.7
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.37
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.26
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	99.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	99.22
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	99.18
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	99.1
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.92
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.86
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.84
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.76
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	95.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	93.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.7
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	92.39
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	90.6
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.2
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	90.07
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.03
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	89.35
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	88.69
d1tbga_	340	beta1-subunit of the signal-transducing G protein	88.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	88.27
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	88.12
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	87.61
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	87.45
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	87.24
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	86.52
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	86.1
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	85.34
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	85.33
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	84.5
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	84.19
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	84.01
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	83.77
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	82.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	80.51
d1tbga_	340	beta1-subunit of the signal-transducing G protein	80.39
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	80.29

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-24  Score=212.45  Aligned_cols=136  Identities=24%  Similarity=0.272  Sum_probs=116.5

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +++ |++.+.||+|+||+||++ ++.+|+.||||++...    ..+.+.+|+..|.+ ++|||||++++++.+++.+|||
T Consensus         4 ~~d-y~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~-l~HpnIv~~~~~~~~~~~~~iv   81 (271)
T d1nvra_           4 VED-WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKM-LNHENVVKFYGHRREGNIQYLF   81 (271)
T ss_dssp             TTE-EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHT-CCCTTBCCEEEEEEETTEEEEE
T ss_pred             Ccc-eEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHh-CCCCCEeeEeeeeccCceeEEE
Confidence            344 999999999999999884 6788999999976532    23457789966544 5999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||+ |+|.++|+.      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|++++.++++++.
T Consensus        82 mEy~~gg~L~~~l~~------~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~  152 (271)
T d1nvra_          82 LEYCSGGELFDRIEP------DIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATV  152 (271)
T ss_dssp             EECCTTEEGGGGSBT------TTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EeccCCCcHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhhee
Confidence            99998 599999976      5679999999999999   899999999999999    889999999888888763

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-23  Score=205.77  Aligned_cols=136  Identities=26%  Similarity=0.268  Sum_probs=116.5

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+ |++.+.||+|+||+||++ ++.+|+.||+|++.+..      ...+.+|+..+.. ++|||||++++++.+++.+|
T Consensus         5 l~d-y~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~   82 (263)
T d2j4za1           5 LED-FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH-LRHPNILRLYGYFHDATRVY   82 (263)
T ss_dssp             GGG-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT-CCCTTBCCEEEEEECSSEEE
T ss_pred             hhH-eEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHh-cCCCCCCeEEEEEEECCEEE
Confidence            344 999999999999999884 66789999999765431      2346688866554 49999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.++++++.
T Consensus        83 ivmEy~~~g~L~~~l~~------~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~  155 (263)
T d2j4za1          83 LILEYAPLGTVYRELQK------LSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVH  155 (263)
T ss_dssp             EEEECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSC
T ss_pred             EEEeecCCCcHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeee
Confidence            9999998 599999987      5579999999999999   899999999999999    899999998888877653

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-23  Score=209.14  Aligned_cols=133  Identities=23%  Similarity=0.312  Sum_probs=115.7

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||+||++ ++.+|+.||||++...   ..+.+.+|+..|.. ++|||||++++++.+.+.+|||||||
T Consensus        21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE-NKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHH-CCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             ccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHh-CCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4999999999999999884 6788999999987643   23457789966654 59999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      + |+|.+++..       +.+++..++.++.|+   |+|||++||||||||    |++.+|+.++.++++++.
T Consensus       100 ~gg~L~~~~~~-------~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~  165 (293)
T d1yhwa1         100 AGGSLTDVVTE-------TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQ  165 (293)
T ss_dssp             TTCBHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             CCCcHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhhee
Confidence            8 599998765       459999999999999   899999999999999    889999999988888764

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.1e-23  Score=206.13  Aligned_cols=133  Identities=23%  Similarity=0.220  Sum_probs=115.9

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.+.||+|+||+||.+ ++.+|+.||||++.+..      .+.+.+|++.|.. ++|||||++++++.+++.+|||||
T Consensus        10 y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~l~~~~~~~~~~~ivmE   88 (288)
T d1uu3a_          10 FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR-LDHPFFVKLYFTFQDDEKLYFGLS   88 (288)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH-CCSTTBCCEEEEEECSSEEEEEEC
T ss_pred             CEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHH-cCCCCeeEEEEEEEECCEEEEEEE
Confidence            999999999999998884 66789999999775431      2346789966655 599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.++++++.
T Consensus        89 y~~gg~L~~~~~~------~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~  157 (288)
T d1uu3a_          89 YAKNGELLKYIRK------IGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV  157 (288)
T ss_dssp             CCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             ccCCCCHHHhhhc------cCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEeccccccee
Confidence            998 599999887      5679999999999999   899999999999999    899999999888887653

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.1e-23  Score=210.16  Aligned_cols=136  Identities=23%  Similarity=0.216  Sum_probs=118.3

Q ss_pred             ceeeeeecccccccCCceEEE-eeeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+ |++.+.||+|+||.||+ +++.+|+.||||++.+.      ....+.+|+..| +.++|||||++++++.+.+.+|
T Consensus         4 l~d-y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il-~~l~hp~Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           4 MND-FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL-QNTRHPFLTALKYAFQTHDRLC   81 (337)
T ss_dssp             GGG-EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCCTTBCCEEEEEECSSEEE
T ss_pred             hHh-cEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHH-HhCCCCCEEEEEeeeccccccc
Confidence            444 99999999999999988 47788999999977653      123567888665 4559999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +|||||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.++++++.
T Consensus        82 iv~ey~~gg~L~~~~~~------~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~  154 (337)
T d1o6la_          82 FVMEYANGGELFFHLSR------ERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             EEEECCTTCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             cceeccCCCchhhhhhc------ccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccc
Confidence            9999998 599999988      5679999999999999   889999999999999    899999999999888764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.7e-23  Score=206.95  Aligned_cols=135  Identities=21%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.+.||+|+||+||++ +..+|+.||||++...   ..+.+.+|++.|..+ +|||||++++++.+.+.+||||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC-DHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHC-CCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhC-CCCCCCeEEEEEeeCCeEEEEEec
Confidence            45999999999999999884 6778999999987642   345678999776555 999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |+ |+|.+++...     ...+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++++++
T Consensus        91 ~~~g~L~~~~~~~-----~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~  158 (288)
T d2jfla1          91 CAGGAVDAVMLEL-----ERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSA  158 (288)
T ss_dssp             CTTEEHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCCCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhh
Confidence            98 5999998762     3569999999999999   899999999999999    89999999888888764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4.5e-23  Score=206.84  Aligned_cols=136  Identities=22%  Similarity=0.168  Sum_probs=117.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      .|++.+.||+|+||+||++ ...+|+.||||+++..  ..+.+.+|+..|..+ +|||||+++++|.+.+..|||||||+
T Consensus        18 ~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~iv~E~~~   96 (287)
T d1opja_          18 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQLLGVCTREPPFYIITEFMT   96 (287)
T ss_dssp             GEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhC-CCCCEecCCccEeeCCeeEEEeeccc
Confidence            3889999999999999885 5677999999988653  234577999766555 99999999999999999999999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                       |+|.+++....    ...+++..++.++.|+   |+|||+++|+|||||    |++.+|.+++.+++++|-
T Consensus        97 ~g~l~~~l~~~~----~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~  164 (287)
T d1opja_          97 YGNLLDYLRECN----RQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRL  164 (287)
T ss_dssp             TCBHHHHHHHSC----TTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTT
T ss_pred             CcchHHHhhhcc----ccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceee
Confidence             69999997632    4578999999999999   999999999999999    899999999998888763

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.1e-23  Score=208.57  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=115.9

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +.|++.+.||+|+||+||++ ++.+|+.||+|+++..    ....+.+|+..| +.++|||||+++++|.+.+.+|||||
T Consensus         6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il-~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-HECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGG-GGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHH-HhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            44999999999999999884 6678999999987532    234577899665 45599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||. |+|.+++.+      .+.+++..++.++.|+   |+|||+ ++|+|||||    |++.+|+.++.++++++
T Consensus        85 y~~gg~L~~~l~~------~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~  153 (322)
T d1s9ja_          85 HMDGGSLDQVLKK------AGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSG  153 (322)
T ss_dssp             CCTTEEHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCH
T ss_pred             cCCCCcHHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCcc
Confidence            998 599999987      4579999999999999   889997 589999999    88999999988888775

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=9e-23  Score=206.66  Aligned_cols=136  Identities=21%  Similarity=0.281  Sum_probs=110.4

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.+.|++.++||+|+||+||++ ++.+|+.||||++.+.    ....+.+|+..|.. ++|||||++++++.+++.+|||
T Consensus         7 i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           7 IRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK-IKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             GGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHT-CCCTTBCCEEEEEECSSEEEEE
T ss_pred             CccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEE
Confidence            4566999999999999999884 6778999999987532    23346689966655 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cc---ccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW---KADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll---~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.++|..      .+.+++..+..++.|+   |+|||+++|+|||||    |+   +.+|+.++.++++++
T Consensus        86 mE~~~gg~L~~~l~~------~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~  158 (307)
T d1a06a_          86 MQLVSGGELFDRIVE------KGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK  158 (307)
T ss_dssp             ECCCCSCBHHHHHHT------CSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC----
T ss_pred             EeccCCCcHHHhhhc------ccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeE
Confidence            99998 699999987      5679999999999999   899999999999999    44   457888888877765

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-22  Score=206.08  Aligned_cols=134  Identities=24%  Similarity=0.254  Sum_probs=116.9

Q ss_pred             eeecccccccCCceEEE-eeeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVY-EGIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~-~~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||+||+ .++.+|+.||||++.+..      .+...+|...+...++|||||++++++.+++.+|||||
T Consensus         4 y~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmE   83 (320)
T d1xjda_           4 FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVME   83 (320)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             eEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEe
Confidence            99999999999999888 477789999999876431      22456777667767799999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||+ |+|.++++.      ...+++..++.++.|+   |+|||+++|+|||||    |++.+|+.++.++++++.
T Consensus        84 y~~~g~L~~~i~~------~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~  152 (320)
T d1xjda_          84 YLNGGDLMYHIQS------CHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKE  152 (320)
T ss_dssp             CCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             ecCCCcHHHHhhc------cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhh
Confidence            998 599999987      5678999999999999   899999999999999    899999999888888763

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-22  Score=203.67  Aligned_cols=136  Identities=23%  Similarity=0.246  Sum_probs=113.2

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---------LHDVAFKEIQNLIASDQHPNIVRWYGVENDK  473 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~  473 (549)
                      .+.++|++.+.||+|+||+||++ ++.+|+.||||++.+.         ..+.+.+|+..|..+ +|||||++++++.+.
T Consensus         7 ~i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~   85 (293)
T d1jksa_           7 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI-QHPNVITLHEVYENK   85 (293)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC-CCTTBCCEEEEEECS
T ss_pred             CcccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhC-CCCCCCcEEEEEEEC
Confidence            35667999999999999998884 6678999999987532         123567899766555 999999999999999


Q ss_pred             ceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC----chh
Q 042769          474 DFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP----SPL  541 (549)
Q Consensus       474 ~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p----~~~  541 (549)
                      +.+|||||||+ |+|.++|..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..    +..
T Consensus        86 ~~~~iv~E~~~gg~L~~~i~~------~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~  159 (293)
T d1jksa_          86 TDVILILELVAGGELFDFLAE------KESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKII  159 (293)
T ss_dssp             SEEEEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEEC
T ss_pred             CEEEEEEEcCCCccccchhcc------ccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEec
Confidence            99999999998 599999987      4579999999999999   899999999999999    77777753    334


Q ss_pred             hhhhh
Q 042769          542 LLSLM  546 (549)
Q Consensus       542 l~~Lm  546 (549)
                      +++++
T Consensus       160 DfG~a  164 (293)
T d1jksa_         160 DFGLA  164 (293)
T ss_dssp             CCTTC
T ss_pred             chhhh
Confidence            44444

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.5e-22  Score=204.20  Aligned_cols=133  Identities=24%  Similarity=0.277  Sum_probs=114.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||+||++ ++.+|+.||||++.+..      .+.+.+|+..| +.++|||||++++++.+.+.+|+|||
T Consensus         6 y~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il-~~l~HpnIv~~~~~~~~~~~~~ivmE   84 (316)
T d1fota_           6 FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML-SIVTHPFIIRMWGTFQDAQQIFMIMD   84 (316)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-HSCCBTTBCCEEEEEECSSEEEEEEC
T ss_pred             eEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHH-HhccCcChhheeeeEeeCCeeeeEee
Confidence            999999999999999884 67889999999876432      23566888555 55599999999999999999999999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||. |+|.+++..      ...+++..++.++.|+   |+|||+++|||||||    |++.+|+.++.++++++.
T Consensus        85 ~~~gg~l~~~~~~------~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~  153 (316)
T d1fota_          85 YIEGGELFSLLRK------SQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKY  153 (316)
T ss_dssp             CCCSCBHHHHHHH------TSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             ecCCccccccccc------cccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceE
Confidence            998 589888877      5678889999999999   899999999999999    899999999888887653

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=3.5e-22  Score=199.42  Aligned_cols=134  Identities=19%  Similarity=0.243  Sum_probs=117.0

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH------------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD  474 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~  474 (549)
                      .|++.+.||+|+||+||++ +..+|+.||||++.+.            ..+.+.+|+..|.++..|||||++++++.+++
T Consensus         4 ~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~   83 (277)
T d1phka_           4 NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETNT   83 (277)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             cCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccCc
Confidence            4999999999999999884 6678999999976432            23357789988877756999999999999999


Q ss_pred             eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 ~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      .+|||||||+ |+|.++|+.      .+.+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.+++++
T Consensus        84 ~~~ivmE~~~~g~L~~~l~~------~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a  157 (277)
T d1phka_          84 FFFLVFDLMKKGELFDYLTE------KVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS  157 (277)
T ss_dssp             EEEEEEECCTTCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEcCCCchHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchhe
Confidence            9999999997 599999987      5679999999999999   899999999999999    8899999888888776


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       158 ~  158 (277)
T d1phka_         158 C  158 (277)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-22  Score=199.78  Aligned_cols=135  Identities=21%  Similarity=0.265  Sum_probs=113.3

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||+||++...+++.||||++...  ..+.+.+|+..+.++ +|||||+++++|..++..|+|||||+ 
T Consensus         6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~~~~~~~lv~E~~~~   84 (263)
T d1sm2a_           6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQLYGVCLEQAPICLVFEFMEH   84 (263)
T ss_dssp             CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhc-CCCCcccccceeccCCceEEEEEecCC
Confidence            38899999999999988866567788999988643  234577899776555 99999999999999999999999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+|.+++...     ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.+++|+|.
T Consensus        85 g~L~~~l~~~-----~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          85 GCLSDYLRTQ-----RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRF  150 (263)
T ss_dssp             CBHHHHHHTT-----TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----
T ss_pred             CcHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchhee
Confidence            6999998762     3568888999999999   899999999999999    899999999998888763

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=3.6e-22  Score=202.38  Aligned_cols=134  Identities=24%  Similarity=0.267  Sum_probs=114.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH------HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR------ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~------~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      +.|+..+.||+|+||+||++ +..+|+.||||++..      ...+.+.+|+..|.+ ++|||||++++++.+++.+|||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~iv   93 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK-LRHPNTIQYRGCYLREHTAWLV   93 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEEETTEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHH-CCCCCEeeEEEEEEECCEEEEE
Confidence            45999999999999998884 678899999997753      223457789966655 4999999999999999999999


Q ss_pred             eccccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||.| +|..++..      ...+++..++.++.|+   |.|||+++|||||||    |++.+|+.++.++++++
T Consensus        94 ~E~~~~g~l~~~~~~------~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~  163 (309)
T d1u5ra_          94 MEYCLGSASDLLEVH------KKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS  163 (309)
T ss_dssp             EECCSEEHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCB
T ss_pred             EEecCCCchHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeeccccc
Confidence            999985 67666555      4679999999999999   899999999999999    88999999888888765

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.82  E-value=6.5e-22  Score=203.91  Aligned_cols=134  Identities=18%  Similarity=0.202  Sum_probs=112.8

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHH---HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR---ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~---~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      .|++.+.||+|+||+||++ ++.+|+.||||++..   ...+.+.+|+..|..+ +|||||++++++.+.+.+|||||||
T Consensus        27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL-RHPTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHT-CCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhC-CCCCCCcEEEEEEECCEEEEEEEcC
Confidence            3999999999999999884 677899999997753   2344577899766555 9999999999999999999999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc--cCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK--ADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~--~~G~p~~~l~~Lmr  547 (549)
                      + |+|.+++..     ..+.+++..++.++.|+   |+|||+++|||||||    |+.  .+|..++.++++++
T Consensus       106 ~gg~L~~~l~~-----~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~  174 (350)
T d1koaa2         106 SGGELFEKVAD-----EHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA  174 (350)
T ss_dssp             CSCBHHHHHTC-----TTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCE
T ss_pred             CCCCHHHHHHh-----hcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchhe
Confidence            8 599999865     13569999999999999   899999999999999    564  46777777777765

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5e-22  Score=197.40  Aligned_cols=137  Identities=23%  Similarity=0.284  Sum_probs=107.5

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEEEEe
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVYLSL  480 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~yLVm  480 (549)
                      |++.+.||+|+||+||++ .+.+|+.||||++...     ..+.+.+|++.|.+ ++|||||++++++.+  ++.+||||
T Consensus         6 y~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~HpnIv~~~~~~~~~~~~~~~ivm   84 (269)
T d2java1           6 YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE-LKHPNIVRYYDRIIDRTNTTLYIVM   84 (269)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTS-CCCTTBCCEEEEEEC----CEEEEE
T ss_pred             CEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHH-CCCCCEeeEEEEEEeCCCCEEEEEE
Confidence            999999999999999884 6788999999976532     33457789966544 599999999999864  45689999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee-----EEEeecc----ccccCCCCchhhhhhhh
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK-----VIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~-----IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |||+ |+|.+++.....  ....+++..++.++.|+   |+|||+++     |||||||    |++.+|..++.++++++
T Consensus        85 Ey~~~g~L~~~i~~~~~--~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          85 EYCEGGDLASVITKGTK--ERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             ECCTTEEHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             ecCCCCcHHHHHHhccc--cCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence            9998 599999976321  23569999999999999   89999865     9999999    89999999998888876


Q ss_pred             c
Q 042769          548 L  548 (549)
Q Consensus       548 d  548 (549)
                      -
T Consensus       163 ~  163 (269)
T d2java1         163 I  163 (269)
T ss_dssp             H
T ss_pred             e
Confidence            3

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.81  E-value=9.4e-22  Score=202.84  Aligned_cols=135  Identities=17%  Similarity=0.127  Sum_probs=113.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH---HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA---LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~---~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +.|++.+.||+|+||+||++ +..+|+.||||++...   ....+.+|+..|.. ++|||||++++++.+++.+||||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQ-LHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTT-CCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEEEc
Confidence            34999999999999999884 6678999999977532   23456789966655 5999999999999999999999999


Q ss_pred             cc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc--cCCCCchhhhhhhh
Q 042769          483 CT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK--ADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~--~~G~p~~~l~~Lmr  547 (549)
                      |. |+|.+++..     ....+++..++.++.|+   |+|||++||||||||    |++  .+|+.++.++++++
T Consensus       108 ~~gg~L~~~~~~-----~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~  177 (352)
T d1koba_         108 LSGGELFDRIAA-----EDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLAT  177 (352)
T ss_dssp             CCCCBHHHHTTC-----TTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCE
T ss_pred             CCCChHHHHHHh-----cCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccce
Confidence            98 599988765     23469999999999999   899999999999999    666  56777777777765

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.9e-22  Score=201.78  Aligned_cols=134  Identities=14%  Similarity=0.096  Sum_probs=110.3

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      +|++.+.||+|+||+||++ ++.+|+.||||.++..  ....+.+|+..|.. ++|||||++++++.+++.+|||||||+
T Consensus         6 rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~-l~HpnIv~~~~~~~~~~~~~lvmE~~~   84 (321)
T d1tkia_           6 KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNI-ARHRNILHLHESFESMEELVMIFEFIS   84 (321)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHH-SCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred             ceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHh-CCCCCCCeEEEEEEECCEEEEEEecCC
Confidence            3999999999999998884 6778999999987643  23356789966654 599999999999999999999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCc--hhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPS--PLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~--~~l~~Lmr  547 (549)
                       |+|.++|...     ...+++.+++.++.|+   |+|||+++|+|||||    |++.++...  ..++++++
T Consensus        85 gg~L~~~i~~~-----~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~  152 (321)
T d1tkia_          85 GLDIFERINTS-----AFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR  152 (321)
T ss_dssp             CCBHHHHHTSS-----SCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCE
T ss_pred             CCcHHHHHHhc-----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhh
Confidence             5999999761     2469999999999999   899999999999999    677665444  44555544

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.2e-21  Score=201.75  Aligned_cols=136  Identities=20%  Similarity=0.192  Sum_probs=117.5

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      +.+ |++.+.||+|+||.||++ ++.+|+.||||++.+..      .+.+.+|+..| +.++|||||++++++.+....|
T Consensus        40 ld~-y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il-~~l~hpnIv~~~~~~~~~~~~~  117 (350)
T d1rdqe_          40 LDQ-FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL-QAVNFPFLVKLEFSFKDNSNLY  117 (350)
T ss_dssp             GGG-EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH-TTCCCTTBCCEEEEEECSSEEE
T ss_pred             ccC-eEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHH-HHcCCCcEeecccccccccccc
Confidence            444 999999999999999884 67889999999775431      23567899665 4459999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +|||||. |+|.+++..      .+.+++..++.++.|+   |.|||+++|||||||    |++.+|+.++.++++++.
T Consensus       118 ~v~e~~~~g~l~~~l~~------~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~  190 (350)
T d1rdqe_         118 MVMEYVAGGEMFSHLRR------IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             EEEECCTTCBHHHHHHH------HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             cccccccccchhhhHhh------cCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeee
Confidence            9999997 599999987      5579999999999999   899999999999999    899999999988888764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7e-22  Score=196.48  Aligned_cols=134  Identities=25%  Similarity=0.186  Sum_probs=110.6

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceE
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFV  476 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~  476 (549)
                      +.|++.++||+|+||+||++ +..+++.||+|.+...     ..+.+.+|++.|. .++|||||++++++.+    ...+
T Consensus         9 ry~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~-~l~HpnIv~~~~~~~~~~~~~~~~   87 (270)
T d1t4ha_           9 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK-GLQHPNIVRFYDSWESTVKGKKCI   87 (270)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHT-TCCCTTBCCEEEEEEEESSSCEEE
T ss_pred             CEEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHH-hCCCCCeeeEEEEEeeccccCCEE
Confidence            44677889999999998884 6678999999976532     2345678996665 4599999999999864    4568


Q ss_pred             EEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eeccccee--EEEeecc----ccc-cCCCCchhhhhh
Q 042769          477 YLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVK--VIIRDLS----LWK-ADGHPSPLLLSL  545 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~--IIHRDLK----Ll~-~~G~p~~~l~~L  545 (549)
                      |||||||+ |+|.+++.+      ...+++..++.++.|+   |+|||+++  |||||||    |++ .+|.+++.++++
T Consensus        88 ~ivmE~~~~g~L~~~l~~------~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGl  161 (270)
T d1t4ha_          88 VLVTELMTSGTLKTYLKR------FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL  161 (270)
T ss_dssp             EEEEECCCSCBHHHHHHH------HSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred             EEEEeCCCCCcHHHHHhc------cccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCc
Confidence            99999998 599999987      4579999999999999   88999988  9999999    775 588888888887


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       162 a~  163 (270)
T d1t4ha_         162 AT  163 (270)
T ss_dssp             GG
T ss_pred             ce
Confidence            75

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1e-21  Score=203.53  Aligned_cols=134  Identities=23%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHHH------hhhhHHHHH--HHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL------HDVAFKEIQ--NLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~------~~~~~~Ei~--~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.++||+|+||.||++ ...+|+.||||++.+..      ...+.+|..  .+++.++|||||++++++.+.+.+|||
T Consensus         6 y~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~iv   85 (364)
T d1omwa3           6 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFI   85 (364)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEE
T ss_pred             CeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEE
Confidence            999999999999999884 67789999999765321      112334432  244556899999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||. |+|.++|..      ...+++..++.++.|+   |.|||+++|||||||    |++.+|++++.+++++++
T Consensus        86 mE~~~gg~L~~~l~~------~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~  156 (364)
T d1omwa3          86 LDLMNGGDLHYHLSQ------HGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACD  156 (364)
T ss_dssp             ECCCCSCBHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEE
T ss_pred             EEecCCCcHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeee
Confidence            99998 699999987      5568899999999999   899999999999999    899999999999988775

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=8.7e-22  Score=198.53  Aligned_cols=134  Identities=22%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             eeeecccccccCCceEEEe-eeecCc---hhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGR---PVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~---~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      .|++.++||+|+||+||++ ...+++   .||||++..    ...+.+.+|+..|.++ +|||||++++++...+.+|||
T Consensus        27 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          27 CVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF-DHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC-CCTTBCCEEEEECSSSSCEEE
T ss_pred             hcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC-CCCCCccEEEEEeeCCEEEEE
Confidence            3889999999999998884 444443   588887653    2334677899666554 999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||+ |+|.+++...     .+.+++..+..++.|+   |+|||+++|||||||    |++.+|.+++.+++|+|
T Consensus       106 ~Ey~~~g~L~~~~~~~-----~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~  176 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQN-----DGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSR  176 (299)
T ss_dssp             EECCTTEEHHHHHHTT-----TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----
T ss_pred             EEecCCCcceeeeccc-----cCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccce
Confidence            99997 6999988762     3468999999999999   899999999999999    89999999999998876

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.7e-22  Score=197.67  Aligned_cols=135  Identities=23%  Similarity=0.192  Sum_probs=113.3

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-  484 (549)
                      .|++.+.||+|+||+||++...+++.||||++...  ..+.+.+|+..|.++ +|||||++++++.. +..|||||||+ 
T Consensus        14 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~g~~~~-~~~~iv~Ey~~~   91 (272)
T d1qpca_          14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL-QHQRLVRLYAVVTQ-EPIYIITEYMEN   91 (272)
T ss_dssp             GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCEEEEECCTT
T ss_pred             HeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhC-CCCCEeEEEeeecc-CCeEEEEEeCCC
Confidence            48999999999999988865556788999988643  234578999776655 99999999998865 56799999997 


Q ss_pred             cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |+|.+++....    ...+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.+++++|-
T Consensus        92 g~L~~~~~~~~----~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          92 GSLVDFLKTPS----GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL  158 (272)
T ss_dssp             CBHHHHTTSHH----HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CcHHHHHhhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEE
Confidence            69999876522    3458999999999999   899999999999999    899999999999988763

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=9.9e-22  Score=195.44  Aligned_cols=137  Identities=20%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc--
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD--  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~--  474 (549)
                      .+.++|++.+.||+|+||+||++ +..+|+.||||++.+.      ....+.+|+..|.. ++|||||++++++...+  
T Consensus         4 ~l~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~-~~hpniv~~~~~~~~~~~~   82 (277)
T d1o6ya_           4 HLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA-LNHPAIVAVYDTGEAETPA   82 (277)
T ss_dssp             EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEEEEECSS
T ss_pred             CccceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHh-cCCCCCCcccceeeeccCC
Confidence            34556999999999999999884 6788999999987532      23457789977654 59999999999987543  


Q ss_pred             --eEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          475 --FVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       475 --~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                        ..|||||||+ |+|.+++..      .+.+++..++.++.|+   |+|||+++|||||||    |++.++......+.
T Consensus        83 ~~~~~lvmE~~~g~~L~~~~~~------~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~  156 (277)
T d1o6ya_          83 GPLPYIVMEYVDGVTLRDIVHT------EGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFG  156 (277)
T ss_dssp             SEEEEEEEECCCEEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCT
T ss_pred             CceEEEEEECCCCCEehhhhcc------cCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhh
Confidence              4899999998 599999877      5679999999999999   899999999999999    78888887776655


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +.+
T Consensus       157 ~~~  159 (277)
T d1o6ya_         157 IAR  159 (277)
T ss_dssp             TCE
T ss_pred             hhh
Confidence            443

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.6e-22  Score=197.71  Aligned_cols=134  Identities=24%  Similarity=0.292  Sum_probs=113.7

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      |++.+.||+|+||+||++ +..+|+.||||++...     ..+.+.+|+..|. .++|||||++++++.+.+.+|+||||
T Consensus         4 Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~-~l~Hp~Iv~~~~~~~~~~~~~iv~e~   82 (298)
T d1gz8a_           4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLK-ELNHPNIVKLLDVIHTENKLYLVFEF   82 (298)
T ss_dssp             EEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHT-TCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHH-hCCCCcEEEeccccccccceeEEEee
Confidence            999999999999999884 6788999999987543     2345678996665 45999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      |.|++.+++...    ....+++..++.++.|+   |+|||+++|||||||    |++.++..++.++++++
T Consensus        83 ~~~~~~~~~~~~----~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~  150 (298)
T d1gz8a_          83 LHQDLKKFMDAS----ALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR  150 (298)
T ss_dssp             CSEEHHHHHHHT----TTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHH
T ss_pred             cCCchhhhhhhh----cccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcce
Confidence            998877777652    24579999999999999   899999999999999    88899988888887764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.4e-22  Score=194.21  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=114.5

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |++.++||+|+||+||++...+++.||||.+++.  ..+.+.+|+..+..+ +|||||+++++|.+++.+++|||||. |
T Consensus         6 ~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l-~HpnIv~~~g~~~~~~~~~iv~Ey~~~g   84 (258)
T d1k2pa_           6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQLYGVCTKQRPIFIITEYMANG   84 (258)
T ss_dssp             CCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTC-CCTTBCCEEEEECCSSSEEEEEECCTTE
T ss_pred             CEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhc-CCCceeeEEEEEeeCCceEEEEEccCCC
Confidence            8888999999999988855557789999987643  234678899666555 99999999999999999999999997 7


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +|.+++..     ....+++..+.+++.|+   |+|||+++|+|||||    |++.++.+++.++++++.
T Consensus        85 ~l~~~~~~-----~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          85 CLLNYLRE-----MRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             EHHHHHHS-----GGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCB
T ss_pred             cHHHhhhc-----cccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhhee
Confidence            99998766     24568889999999999   899999999999999    899999999988888764

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-21  Score=194.81  Aligned_cols=128  Identities=23%  Similarity=0.227  Sum_probs=106.7

Q ss_pred             ccccccCCceEEEee---eecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc
Q 042769          413 TEIAKGSNGTVVYEG---IYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT  484 (549)
Q Consensus       413 ~~LG~G~fG~V~~~~---~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~  484 (549)
                      ++||+|+||+||++.   ..+++.||||+++..     ..+.+.+|+..|.++ +|||||+++++|..+ ..|||||||+
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l-~HpnIv~~~g~~~~~-~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNPYIVRMIGICEAE-SWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC-CCTTBCCEEEEEESS-SEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhC-CCCCCceEEEEeccC-CEEEEEEcCC
Confidence            579999999988742   334678999977543     234577899766554 999999999999754 5789999997


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                       |+|.++++.      ...+++..+..++.|+   |+|||+++|||||||    |++.+|.+++.+++|.|.
T Consensus        91 ~g~L~~~l~~------~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~  156 (277)
T d1xbba_          91 LGPLNKYLQQ------NRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKA  156 (277)
T ss_dssp             TEEHHHHHHH------CTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CCcHHHHHhh------ccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhh
Confidence             699999987      5679999999999999   999999999999999    899999999999988764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-21  Score=199.18  Aligned_cols=137  Identities=20%  Similarity=0.240  Sum_probs=112.0

Q ss_pred             cceeeeeec-ccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC----cceEE
Q 042769          404 NVGKLFVSN-TEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND----KDFVY  477 (549)
Q Consensus       404 ~igk~y~~~-~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----~~~~y  477 (549)
                      .+++ |.+. +.||+|+||+||++ ++.+|+.||||++..  .....+|+..+.++.+|||||+++++|.+    +..+|
T Consensus         9 i~~~-y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~--~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1           9 IIDD-YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GGGT-EEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC--SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cccC-EEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC--cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            3455 7765 57999999999885 678899999998753  34577899887777799999999999865    56799


Q ss_pred             EEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc---CCCCchhhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA---DGHPSPLLLSLM  546 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~---~G~p~~~l~~Lm  546 (549)
                      ||||||+ |+|.++|....    ...+++.+++.++.|+   |+|||+++|+|||||    |++.   +|..++.+++++
T Consensus        86 ivmEy~~gg~L~~~i~~~~----~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRG----DQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCS----CCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEECCCCCcHHHHHHhcC----CCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccccccccccccee
Confidence            9999998 59999997632    3469999999999999   899999999999999    6654   455667777765


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       162 ~  162 (335)
T d2ozaa1         162 K  162 (335)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-21  Score=193.72  Aligned_cols=131  Identities=21%  Similarity=0.209  Sum_probs=107.6

Q ss_pred             cccccccCCceEEEe-eeecCchhHHHHHHHHH--------hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          412 NTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL--------HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       412 ~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~--------~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      .++||+|+||+||++ +..+|+.||||+++...        ...+.+|+..|.. ++|||||++++++..++.+||||||
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~-l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE-LSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHH-CCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHh-CCCCCEeEEEeeeccCCceeehhhh
Confidence            478999999999884 67789999999876431        2346789966655 4999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |.|++...+..     ....+++..++.++.|+   |+|||+++|+|||||    |++.+|..++.++++++.
T Consensus        82 ~~~~~~~~~~~-----~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~  149 (299)
T d1ua2a_          82 METDLEVIIKD-----NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKS  149 (299)
T ss_dssp             CSEEHHHHHTT-----CCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred             hcchHHhhhhh-----cccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccc
Confidence            98744444433     14679999999999999   889999999999999    899999999988888753

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.2e-21  Score=195.53  Aligned_cols=141  Identities=19%  Similarity=0.157  Sum_probs=113.2

Q ss_pred             eeeecccccccCCceEEEe-eeecC-----chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEG-----RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g-----~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.++||+|+||+||++ ...++     ..||+|.+...    ....+.+|+..|.++.+|||||++++++.+.+.+|
T Consensus        38 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~  117 (325)
T d1rjba_          38 NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIY  117 (325)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEE
Confidence            4899999999999998874 33332     36899876432    23456789988877779999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC-----------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----cc
Q 042769          478 LSLERCT-CSLDDLIQTYSDS-----------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LW  532 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~-----------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll  532 (549)
                      ||||||+ |+|.++|+..+..                 .....+++..++.++.|+   |+|||+++|||||||    |+
T Consensus       118 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill  197 (325)
T d1rjba_         118 LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLV  197 (325)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEE
T ss_pred             EEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhcccc
Confidence            9999997 6999999864311                 112358889999999999   899999999999999    89


Q ss_pred             ccCCCCchhhhhhhhc
Q 042769          533 KADGHPSPLLLSLMRL  548 (549)
Q Consensus       533 ~~~G~p~~~l~~Lmrd  548 (549)
                      +.+|++++.+++|+|.
T Consensus       198 ~~~~~~Kl~DFGla~~  213 (325)
T d1rjba_         198 THGKVVKICDFGLARD  213 (325)
T ss_dssp             ETTTEEEECCCGGGSC
T ss_pred             ccCCeEEEeecccccc
Confidence            9999999999998763

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-21  Score=192.17  Aligned_cols=133  Identities=20%  Similarity=0.183  Sum_probs=109.1

Q ss_pred             eeecc-cccccCCceEEEe-ee--ecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          409 FVSNT-EIAKGSNGTVVYE-GI--YEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       409 y~~~~-~LG~G~fG~V~~~-~~--~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      |.+.+ +||+|+||+||++ .+  .++..||||+++.    ...+.+.+|+..|.++ +|||||++++++.. +.+||||
T Consensus        10 ~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l-~HpnIv~l~g~~~~-~~~~lvm   87 (285)
T d1u59a_          10 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNPYIVRLIGVCQA-EALMLVM   87 (285)
T ss_dssp             EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC-CCTTBCCEEEEEES-SSEEEEE
T ss_pred             eEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhC-CCCCEeeEeeeecc-CeEEEEE
Confidence            66666 4999999998874 22  3456799998753    2345678899776655 99999999999975 4589999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||+ |+|.+++...     ...+++..+..++.|+   |+|||+++|||||||    |++.+|.+++.+++|+|.
T Consensus        88 E~~~~g~L~~~l~~~-----~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          88 EMAGGGPLHKFLVGK-----REEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             ECCTTEEHHHHHTTC-----TTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EeCCCCcHHHHhhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhc
Confidence            9998 5999998652     3568999999999999   999999999999999    899999999999988764

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-21  Score=192.14  Aligned_cols=130  Identities=22%  Similarity=0.184  Sum_probs=107.6

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEeccc
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERC  483 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~  483 (549)
                      |++.+.||+|+||+||++. . +..||||+++..     ..+.+.+|+..|.++ +|||||++++++.. +.+|||||||
T Consensus        10 ~~~~~~lG~G~fg~Vy~~~-~-~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~~~~~~~~-~~~~lv~Ey~   85 (276)
T d1uwha_          10 ITVGQRIGSGSFGTVYKGK-W-HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT-RHVNILLFMGYSTA-PQLAIVTQWC   85 (276)
T ss_dssp             CCCCSEEEECSSCEEEEEE-S-SSEEEEEECCCSSCCTTHHHHHHHHHHHHTTC-CCTTBCCEEEEECS-SSCEEEEECC
T ss_pred             EEEEEEEeeCCCcEEEEEE-E-CCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC-CCCCEeeeeEEEec-cEEEEEEecC
Confidence            8888999999999987742 2 345999987532     234567899666554 99999999998764 5689999999


Q ss_pred             c-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          484 T-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       484 ~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      + |+|.+++...     ...+++..+..++.|+   |+|||+++|||||||    |++.+|++++.++++++
T Consensus        86 ~~g~L~~~l~~~-----~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~  152 (276)
T d1uwha_          86 EGSSLYHHLHII-----ETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT  152 (276)
T ss_dssp             CEEEHHHHHHTS-----CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSC
T ss_pred             CCCCHHHHHhhc-----cCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEcccccee
Confidence            8 6999999762     3468999999999999   899999999999999    89999999998888765

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.2e-21  Score=193.13  Aligned_cols=134  Identities=19%  Similarity=0.211  Sum_probs=112.0

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH--HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA--LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||+||++...+++.||||++...  ..+.+.+|+..+.. ++|||||++++++.+ +..|+|||||. |
T Consensus        19 ~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~-l~h~nIv~~~g~~~~-~~~~lv~Ey~~~g   96 (285)
T d1fmka3          19 LRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKK-LRHEKLVQLYAVVSE-EPIYIVTEYMSKG   96 (285)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSCEEEECCCTTC
T ss_pred             EEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHh-cccCCEeEEEEEEec-CCeEEEEEecCCC
Confidence            9999999999999988865555678999988644  23467889966655 499999999999865 55789999997 6


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +|..++....    ...+++.+++.++.|+   |+|||+++|+|||||    |++.+|.+++.+++++|.
T Consensus        97 ~l~~~~~~~~----~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~  162 (285)
T d1fmka3          97 SLLDFLKGET----GKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARL  162 (285)
T ss_dssp             BHHHHHSHHH----HTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred             chhhhhhhcc----cccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhh
Confidence            9998887622    3468999999999999   899999999999999    899999999998888764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.77  E-value=8.7e-21  Score=192.85  Aligned_cols=131  Identities=18%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeeccC--cceEEEEecccc
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEND--KDFVYLSLERCT  484 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~--~~~~yLVmE~~~  484 (549)
                      .|++.++||+|+||+||++ ++.+|+.||||+++....+++.+|+..|..+..||||+++++++..  ...+++|||||.
T Consensus        36 ~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~  115 (328)
T d3bqca1          36 DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVN  115 (328)
T ss_dssp             GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCC
T ss_pred             CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecC
Confidence            4999999999999999884 7788999999988765566788999887777579999999999874  456999999998


Q ss_pred             -cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC-Cchhhhhhhh
Q 042769          485 -CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH-PSPLLLSLMR  547 (549)
Q Consensus       485 -GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~-p~~~l~~Lmr  547 (549)
                       |+|..+.+         .+++..++.++.|+   |+|||+++|||||||    |++.++. .++.++++++
T Consensus       116 ~~~L~~~~~---------~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~  178 (328)
T d3bqca1         116 NTDFKQLYQ---------TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE  178 (328)
T ss_dssp             SCBGGGTTT---------SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCE
T ss_pred             CCcHHHHhc---------CCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccce
Confidence             58876543         48999999999999   899999999999999    7776664 6777777765

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-20  Score=192.97  Aligned_cols=136  Identities=22%  Similarity=0.272  Sum_probs=110.8

Q ss_pred             cceeeeeecccccccCCceEEEe-eeecCchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKD----  474 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----  474 (549)
                      .++.+|++.+.||+|+||+||++ +..+|+.||||++.+    ...+.+.+|+..|..+ +||||+++++++....    
T Consensus         5 ~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l-~hp~iv~~~~~~~~~~~~~~   83 (345)
T d1pmea_           5 DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF-RHENIIGINDIIRAPTIEQM   83 (345)
T ss_dssp             CCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHC-CCTTBCCCCEEECCSSTTTC
T ss_pred             CcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeecccccc
Confidence            35566999999999999999885 678899999998763    2344677899777665 9999999999987543    


Q ss_pred             -eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          475 -FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       475 -~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                       ..||+|+++.|+|.+++..       ..+++..++.++.|+   |+|||+++|||||||    |++.+|++++.++++.
T Consensus        84 ~~~~l~~~~~~g~L~~~l~~-------~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a  156 (345)
T d1pmea_          84 KDVYLVTHLMGADLYKLLKT-------QHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLA  156 (345)
T ss_dssp             CCEEEEEECCCEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             ceEEEEEeecCCchhhhhhc-------CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCce
Confidence             4677777677899999976       359999999999999   889999999999999    8999999888888775


Q ss_pred             h
Q 042769          547 R  547 (549)
Q Consensus       547 r  547 (549)
                      +
T Consensus       157 ~  157 (345)
T d1pmea_         157 R  157 (345)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-20  Score=193.92  Aligned_cols=137  Identities=20%  Similarity=0.190  Sum_probs=108.9

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHHHhhhhHHHHHHHHhcCCCCCeeEEeeecc------CcceEEEEe
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRALHDVAFKEIQNLIASDQHPNIVRWYGVEN------DKDFVYLSL  480 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~------~~~~~yLVm  480 (549)
                      .|...++||+|+||+||++ +..+|+.||||++... .....+|+..|.++ +|||||+++++|.      +..++||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-~~~~~~Ei~il~~l-~h~niv~~~~~~~~~~~~~~~~~~~lv~   98 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD-KRFKNRELQIMRKL-DHCNIVRLRYFFYSSGEKKDEVYLNLVL   98 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SSSCCHHHHHHHHC-CCTTBCCEEEEEEEC--CCSCCEEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECcc-chHHHHHHHHHHhc-CCCCCCcEEEEEEecCccCCceEEEEEE
Confidence            4999999999999999884 6678999999988643 33456899776555 9999999999984      334589999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCC-CCchhhhhhhhc
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADG-HPSPLLLSLMRL  548 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G-~p~~~l~~Lmrd  548 (549)
                      |||++++.+.+....  .....+++..++.++.|+   |+|||++||+|||||    |++.+| ..++.++++++.
T Consensus        99 Ey~~~~~~~~l~~~~--~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_          99 DYVPETVYRVARHYS--RAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             ECCSEEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEE
T ss_pred             eccCCccHHHHHhhh--hccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhh
Confidence            999976655554321  124569999999999999   899999999999999    788776 667778777653

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-20  Score=193.77  Aligned_cols=135  Identities=23%  Similarity=0.317  Sum_probs=108.2

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcc----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKD----  474 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~----  474 (549)
                      +.++|++.+.||+|+||+||++ ++.+|+.||||++.+.     ..+.+.+|+..|..+ +|||||+++++|...+    
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~hpniv~l~~~~~~~~~~~~   94 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHENVIGLLDVFTPDETLDD   94 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC-CBTTBCCCSEEECSCSSTTT
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhc-CCCCeeEEEEEeccCccccc
Confidence            4556999999999999999884 6778999999987642     244677899776555 9999999999987654    


Q ss_pred             --eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          475 --FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       475 --~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                        .+|||||||.++|..+++.       ..+++..++.++.|+   |+|||+++|||||||    |++.+|..+...+.+
T Consensus        95 ~~~~~lv~e~~~~~l~~~~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~  167 (346)
T d1cm8a_          95 FTDFYLVMPFMGTDLGKLMKH-------EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGL  167 (346)
T ss_dssp             CCCCEEEEECCSEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             cceEEEEEecccccHHHHHHh-------ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccc
Confidence              5799999997788887755       469999999999999   899999999999999    899999988887777


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       168 a~  169 (346)
T d1cm8a_         168 AR  169 (346)
T ss_dssp             CE
T ss_pred             ee
Confidence            65

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.6e-21  Score=189.29  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=112.0

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH---------hhhhHHHHHHHHhcC-CCCCeeEEeeeccCcce
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL---------HDVAFKEIQNLIASD-QHPNIVRWYGVENDKDF  475 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~---------~~~~~~Ei~~L~~~l-~HpNIVrl~g~~~~~~~  475 (549)
                      ++|++.++||+|+||+||++ +..+|+.||||++.+..         ..++.+|+..|..+. .|||||++++++.+.+.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            34999999999999998884 67789999999886532         123568997776653 49999999999999999


Q ss_pred             EEEEecccc--cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccC-CCCchhhhhh
Q 042769          476 VYLSLERCT--CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKAD-GHPSPLLLSL  545 (549)
Q Consensus       476 ~yLVmE~~~--GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~-G~p~~~l~~L  545 (549)
                      .|+||||+.  +++.+++..      ...+++..++.++.|+   |+|||+++|+|||||    |++.+ |..++.++++
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~------~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~  157 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITE------RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS  157 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHH------HCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEEEEeccCcchHHHHHhc------cCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECcccc
Confidence            999999996  378888877      5679999999999999   899999999999999    77754 6677777776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       158 a~  159 (273)
T d1xwsa_         158 GA  159 (273)
T ss_dssp             CE
T ss_pred             ce
Confidence            54

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.76  E-value=1.3e-20  Score=187.98  Aligned_cols=133  Identities=23%  Similarity=0.296  Sum_probs=111.2

Q ss_pred             eeeecccccccCCceEEEeeeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          408 LFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +|++.++||+|+||+||++...+|+.||||++....     .+.+.+|+..|.+ ++|||||++++++...+..|++||+
T Consensus         3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKE-LKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG-CCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHh-CCCCcEEeeeeecccCCceeEEEEe
Confidence            499999999999999988655678999999876431     3357789966654 5999999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLM  546 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lm  546 (549)
                      +.|.+...+..     ..+.+++..++.++.|+   |+|||+++|||||||    |++.+|..+..++++.
T Consensus        82 ~~~~~~~~~~~-----~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a  147 (286)
T d1ob3a_          82 LDQDLKKLLDV-----CEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA  147 (286)
T ss_dssp             CSEEHHHHHHT-----STTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHH
T ss_pred             ehhhhHHHHHh-----hcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccc
Confidence            98755555443     15679999999999999   899999999999999    8899999888776654

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.2e-21  Score=188.25  Aligned_cols=134  Identities=25%  Similarity=0.295  Sum_probs=107.9

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceEEEEecccc-c
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFVYLSLERCT-C  485 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~yLVmE~~~-G  485 (549)
                      |++.+.||+|+||.||++ ..+|+.||||+++.+ ..+.+.+|+..+.. ++|||||++++++.. ++.+|||||||+ |
T Consensus         9 ~~~~~~lG~G~fg~Vy~~-~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g   86 (262)
T d1byga_           9 LKLLQTIGKGEFGDVMLG-DYRGNKVAVKCIKNDATAQAFLAEASVMTQ-LRHSNLVQLLGVIVEEKGGLYIVTEYMAKG   86 (262)
T ss_dssp             EEEEEEEEECSSCEEEEE-EETTEEEEEEECCCCC--HHHHHTHHHHTT-CCCTTBCCEEEEECCC--CCEEEECCCTTE
T ss_pred             eEEeEEEecCCCeEEEEE-EECCeEEEEEEECcHHHHHHHHHHHHHHHh-CCCCCEeeEEEEEEecCCcEEEEEeccCCC
Confidence            888899999999987664 457889999988643 23457789966655 599999999998854 567899999997 6


Q ss_pred             chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          486 SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       486 sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      +|.++|....    ...+++..++.++.|+   |.|||+++|+|||||    |++.+|++++..++++|.
T Consensus        87 ~L~~~l~~~~----~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~  152 (262)
T d1byga_          87 SLVDYLRSRG----RSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKE  152 (262)
T ss_dssp             EHHHHHHHHH----HHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---
T ss_pred             CHHHHHHhcC----CCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeeccccccee
Confidence            9999997632    3458999999999999   899999999999999    889999988888777664

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-20  Score=186.41  Aligned_cols=133  Identities=21%  Similarity=0.147  Sum_probs=108.2

Q ss_pred             eeecccccccCCceEEEe-eeecC----chhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEG----RPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g----~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |+..++||+|+||+||++ ...++    ..||||++...    ....+.+|+..|.+ ++|||||+++|++...+..++|
T Consensus         9 ~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~-l~H~nIv~~~g~~~~~~~~~~v   87 (283)
T d1mqba_           9 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQ-FSHHNIIRLEGVISKYKPMMII   87 (283)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHT-CCCTTBCCEEEEECSSSSEEEE
T ss_pred             eEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHh-cCCCCEeeeeEEEecCCceEEE
Confidence            788899999999998874 22222    47999977532    23356789966655 4999999999999999999999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||||. |+|.+++..     ....+++..+..++.|+   |+|||+++|+|||||    |++.+|.+++.+++|.|
T Consensus        88 ~e~~~~~~l~~~~~~-----~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~  158 (283)
T d1mqba_          88 TEYMENGALDKFLRE-----KDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSR  158 (283)
T ss_dssp             EECCTTEEHHHHHHH-----TTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             EEecccCcchhhhhc-----ccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhh
Confidence            99997 588887766     23568999999999999   899999999999999    99999999998888765

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-20  Score=187.50  Aligned_cols=141  Identities=22%  Similarity=0.208  Sum_probs=109.9

Q ss_pred             eeeecccccccCCceEEEe-eeec-------CchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcce
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYE-------GRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDF  475 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~-------g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~  475 (549)
                      .|++.+.||+|+||.||++ ...+       +..||||++.+.    ....+.+|...+.++.+|||||+++++|.+++.
T Consensus        14 ~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~   93 (299)
T d1fgka_          14 RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGP   93 (299)
T ss_dssp             GEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCe
Confidence            4999999999999999884 2222       347999988643    234566788777777799999999999999999


Q ss_pred             EEEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          476 VYLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       476 ~yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      +|+|||||. |+|.++|+.....          .....+++..++.++.|+   |+|||+++|||||||    |++.+|.
T Consensus        94 ~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~  173 (299)
T d1fgka_          94 LYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNV  173 (299)
T ss_dssp             CEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCC
T ss_pred             EEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCC
Confidence            999999997 6999999864311          123468999999999999   899999999999999    8899999


Q ss_pred             Cchhhhhhhhc
Q 042769          538 PSPLLLSLMRL  548 (549)
Q Consensus       538 p~~~l~~Lmrd  548 (549)
                      .++.++.+.++
T Consensus       174 ~kl~dfg~~~~  184 (299)
T d1fgka_         174 MKIADFGLARD  184 (299)
T ss_dssp             EEECSTTCCCC
T ss_pred             eEeccchhhcc
Confidence            98888877664

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.6e-20  Score=183.37  Aligned_cols=133  Identities=26%  Similarity=0.224  Sum_probs=103.5

Q ss_pred             eeecccccccCCceEEEee-e-ecC--chhHHHHHHHH------HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEE
Q 042769          409 FVSNTEIAKGSNGTVVYEG-I-YEG--RPVAVKRLVRA------LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYL  478 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~-~-~~g--~~VAVK~i~~~------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yL  478 (549)
                      |++.+.||+|+||.||++. . .++  ..||||++.+.      ..+.+.+|+..|..+ +|||||++++++.++ ..++
T Consensus        10 ~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l-~H~nIv~~~g~~~~~-~~~l   87 (273)
T d1u46a_          10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-DHRNLIRLYGVVLTP-PMKM   87 (273)
T ss_dssp             EEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSS-SCEE
T ss_pred             eEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEeec-chhe
Confidence            9999999999999988742 2 223  47899988753      234567899666555 999999999999764 6789


Q ss_pred             Eecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          479 SLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       479 VmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||||+ |+|.+++...     .+.+++..++.++.|+   |.|||+++|+|||||    |++.++.+++.+++|++.
T Consensus        88 v~e~~~~~~l~~~~~~~-----~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKH-----QGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             EEECCTTCBHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             eeeeecCcchhhhhhcc-----cCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhh
Confidence            999997 6998887762     3569999999999999   899999999999999    899999999999988875

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-20  Score=184.41  Aligned_cols=134  Identities=24%  Similarity=0.217  Sum_probs=113.8

Q ss_pred             eeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      +|++.++||+|+||+||++ +..+|+.||||+++..     ...++.+|+..|.. ++|||||++++++.+....++++|
T Consensus         3 ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~-l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE-LKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT-CCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHh-cCcCCEEeeccccccccceeEEee
Confidence            4999999999999999884 6778999999987532     23466789966654 599999999999999999999999


Q ss_pred             cccc-chhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          482 RCTC-SLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       482 ~~~G-sL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ++.| +|..++..      .+.+++..++.++.|+   |+|||+++|+|||||    |++.++..+..++++++.
T Consensus        82 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~  150 (292)
T d1unla_          82 FCDQDLKKYFDSC------NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARA  150 (292)
T ss_dssp             CCSEEHHHHHHHT------TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             ecccccccccccc------ccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhc
Confidence            9985 77776665      5678899999999999   899999999999999    788899888888777653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.6e-20  Score=185.11  Aligned_cols=141  Identities=21%  Similarity=0.228  Sum_probs=106.7

Q ss_pred             eeeecccccccCCceEEEee-e-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG-I-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFV  476 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~-~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~  476 (549)
                      .|++.++||+|+||.||++. .     .+++.||||++...    ....+.+|...+.++.+|+|||++++++.. +..+
T Consensus        14 ~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~   93 (299)
T d1ywna1          14 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL   93 (299)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCC
T ss_pred             HEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeE
Confidence            49999999999999988742 2     34578999988753    233566777778888789999999998765 4568


Q ss_pred             EEEecccc-cchhhhhhhcccC----------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCC
Q 042769          477 YLSLERCT-CSLDDLIQTYSDS----------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHP  538 (549)
Q Consensus       477 yLVmE~~~-GsL~~~L~~~~~~----------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p  538 (549)
                      ++|||||+ |+|.++|+..+..          .....+++..++.++.|+   |+|||+++|||||||    |++.+|+.
T Consensus        94 ~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~~  173 (299)
T d1ywna1          94 MVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVV  173 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCE
T ss_pred             EEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCcE
Confidence            99999998 6999999863311          012358899999999999   899999999999999    89999999


Q ss_pred             chhhhhhhhc
Q 042769          539 SPLLLSLMRL  548 (549)
Q Consensus       539 ~~~l~~Lmrd  548 (549)
                      ++.+++|+|.
T Consensus       174 Kl~DFGla~~  183 (299)
T d1ywna1         174 KICDFGLARD  183 (299)
T ss_dssp             EECC------
T ss_pred             EEccCcchhh
Confidence            9999998864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-20  Score=188.59  Aligned_cols=141  Identities=21%  Similarity=0.157  Sum_probs=115.1

Q ss_pred             eeeecccccccCCceEEEee------eecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEG------IYEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~------~~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.++||+|+||.||.+.      ..+++.||||++...    ....+.+|+..+.++.+|||||++++++...+..|
T Consensus        24 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~  103 (311)
T d1t46a_          24 RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTL  103 (311)
T ss_dssp             GEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEE
Confidence            48889999999999988742      234678999987642    23356788877777768999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCC
Q 042769          478 LSLERCT-CSLDDLIQTYSDS------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGH  537 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~  537 (549)
                      |+||||+ |+|.++++.....            .....+++..+..++.|+   |+|||++++||||||    |++.+|.
T Consensus       104 lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~~  183 (311)
T d1t46a_         104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRI  183 (311)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTE
T ss_pred             EEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccCc
Confidence            9999997 6999999874311            112358889999999999   899999999999999    8899999


Q ss_pred             Cchhhhhhhhc
Q 042769          538 PSPLLLSLMRL  548 (549)
Q Consensus       538 p~~~l~~Lmrd  548 (549)
                      ++..++++.+.
T Consensus       184 ~ki~DfG~~~~  194 (311)
T d1t46a_         184 TKICDFGLARD  194 (311)
T ss_dssp             EEECCCGGGSC
T ss_pred             ccccccchhee
Confidence            98888887764

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.2e-20  Score=185.07  Aligned_cols=133  Identities=23%  Similarity=0.239  Sum_probs=106.1

Q ss_pred             eeeeecccccccCCceEEEeeeecCchhHHHHHHHHHhhhhHHHHHHH-HhcCCCCCeeEEeeeccCcc----eEEEEec
Q 042769          407 KLFVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRALHDVAFKEIQNL-IASDQHPNIVRWYGVENDKD----FVYLSLE  481 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~~~~~~~~Ei~~L-~~~l~HpNIVrl~g~~~~~~----~~yLVmE  481 (549)
                      +.|.+.+.||+|+||.||++ ..+|+.||||++.........+|.+.+ +..++|||||++++++...+    .+|||||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~-~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E   81 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRG-KWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEE-EETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEE-EECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence            34888899999999987654 578999999988654444444454332 23459999999999987654    6899999


Q ss_pred             ccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc--------eeEEEeecc----ccccCCCCchhhhhh
Q 042769          482 RCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS--------VKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~--------~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ||. |+|.++|++       ..+++.....++.|+   |.|||.        ++|||||||    |++.+|.+++.+++|
T Consensus        82 y~~~g~L~~~l~~-------~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl  154 (303)
T d1vjya_          82 YHEHGSLFDYLNR-------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  154 (303)
T ss_dssp             CCTTCBHHHHHHH-------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             cccCCCHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCc
Confidence            997 699999987       348888888999988   677774        699999999    899999999988887


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      .+
T Consensus       155 ~~  156 (303)
T d1vjya_         155 AV  156 (303)
T ss_dssp             CE
T ss_pred             cc
Confidence            65

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.4e-20  Score=186.52  Aligned_cols=139  Identities=23%  Similarity=0.264  Sum_probs=113.0

Q ss_pred             eeecccccccCCceEEEe-eeecCc--hhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEec
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGR--PVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLE  481 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~--~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE  481 (549)
                      |++.++||+|+||.||++ ...+|.  .||||++..    ...+.+.+|+..|.++.+|||||+++++|...+..|||||
T Consensus        12 ~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~e   91 (309)
T d1fvra_          12 IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIE   91 (309)
T ss_dssp             CEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEE
Confidence            888999999999998884 555665  577886542    2344678999777766589999999999999999999999


Q ss_pred             ccc-cchhhhhhhccc----------CCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhh
Q 042769          482 RCT-CSLDDLIQTYSD----------SSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLL  543 (549)
Q Consensus       482 ~~~-GsL~~~L~~~~~----------~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~  543 (549)
                      ||+ |+|.++|+....          ......+++..+..++.|+   |.|||+++|||||||    |++.++.+++.++
T Consensus        92 y~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~Df  171 (309)
T d1fvra_          92 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADF  171 (309)
T ss_dssp             CCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCT
T ss_pred             ecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEccc
Confidence            998 699999976310          1123568999999999999   899999999999999    8899999888888


Q ss_pred             hhhh
Q 042769          544 SLMR  547 (549)
Q Consensus       544 ~Lmr  547 (549)
                      ++++
T Consensus       172 G~a~  175 (309)
T d1fvra_         172 GLSR  175 (309)
T ss_dssp             TCEE
T ss_pred             cccc
Confidence            8765

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.5e-20  Score=184.13  Aligned_cols=139  Identities=24%  Similarity=0.323  Sum_probs=109.7

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHHH-----hhhhHHHHHHHHhcCCCCCeeEEeeeccC----
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRAL-----HDVAFKEIQNLIASDQHPNIVRWYGVEND----  472 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~~-----~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~----  472 (549)
                      ..+++ |++.++||+|+||+||++ +..+|+.||||++....     ...+.+|+..|..+ +||||+++++++..    
T Consensus         7 ~~~~r-Y~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l-~h~nii~~~~~~~~~~~~   84 (318)
T d3blha1           7 DEVSK-YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL-KHENVVNLIEICRTKASP   84 (318)
T ss_dssp             CBGGG-EEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHC-CCTTBCCEEEEEEC----
T ss_pred             CccCC-EEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHh-cCCCccceEeeeeccccc
Confidence            34666 999999999999998884 66789999999876542     23467899766555 99999999998754    


Q ss_pred             ----cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchh
Q 042769          473 ----KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPL  541 (549)
Q Consensus       473 ----~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~  541 (549)
                          .+.+|++||||.+.+...+..     ....+++..++.++.|+   |.|||+++|+|||||    |++.+|.+++.
T Consensus        85 ~~~~~~~~~iv~e~~~~~~~~~~~~-----~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~  159 (318)
T d3blha1          85 YNRCKGSIYLVFDFCEHDLAGLLSN-----VLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLA  159 (318)
T ss_dssp             ------CEEEEEECCCEEHHHHHTC-----TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEEC
T ss_pred             ccccCceEEEEEeccCCCccchhhh-----cccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEee
Confidence                346899999998655444433     24578999999999999   889999999999999    89999998888


Q ss_pred             hhhhhhc
Q 042769          542 LLSLMRL  548 (549)
Q Consensus       542 l~~Lmrd  548 (549)
                      ++++.+.
T Consensus       160 dfg~~~~  166 (318)
T d3blha1         160 DFGLARA  166 (318)
T ss_dssp             CCTTCEE
T ss_pred             ecceeee
Confidence            8887654

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.9e-20  Score=180.87  Aligned_cols=134  Identities=20%  Similarity=0.233  Sum_probs=105.2

Q ss_pred             eeeecccccccCCceEEEe-eeec---CchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GIYE---GRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~~~---g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      .|++.+.||+|+||.||++ ...+   +..||||.+..    ...+.+.+|+..|.++ +|||||++++++. ++.+|+|
T Consensus         8 ~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~~~~~-~~~~~iv   85 (273)
T d1mp8a_           8 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHPHIVKLIGVIT-ENPVWII   85 (273)
T ss_dssp             GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC-CCTTBCCEEEEEC-SSSCEEE
T ss_pred             HeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEe-cCeEEEE
Confidence            4999999999999998874 3322   45688887653    2334577899666554 9999999999996 4678999


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      ||||. |+|.+++..     ....+++..++.++.|+   |+|||+++|||||||    |++.+|.+++.++++++.
T Consensus        86 ~E~~~~g~l~~~~~~-----~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          86 MELCTLGELRSFLQV-----RKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             EECCTTEEHHHHHHH-----TTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------
T ss_pred             EEeccCCcHHhhhhc-----cCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhhee
Confidence            99997 699988766     23568999999999999   899999999999999    889999999988888763

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.2e-20  Score=188.27  Aligned_cols=134  Identities=22%  Similarity=0.297  Sum_probs=106.7

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCc-----
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-----LHDVAFKEIQNLIASDQHPNIVRWYGVENDK-----  473 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~-----  473 (549)
                      +.++|++.+.||+|+||+||++ +..+|+.||||++.+.     ..+.+.+|++.|..+ +|||||++++++...     
T Consensus        16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l-~h~~iv~~~~~~~~~~~~~~   94 (348)
T d2gfsa1          16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM-KHENVIGLLDVFTPARSLEE   94 (348)
T ss_dssp             EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHC-CCTTBCCCSEEECSCSSTTT
T ss_pred             CCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhc-CCCCeeeEEEEEeecccccc
Confidence            3445999999999999999885 6788999999987632     334677899776555 999999999998533     


Q ss_pred             -ceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          474 -DFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       474 -~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                       ...|++++++.|+|.++++.       +.+++..++.++.|+   |+|||+++|+|||||    |++.+|..+...+.+
T Consensus        95 ~~~~~i~~~~~gg~L~~~~~~-------~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~  167 (348)
T d2gfsa1          95 FNDVYLVTHLMGADLNNIVKC-------QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGL  167 (348)
T ss_dssp             CCCCEEEEECCSEEHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC--
T ss_pred             CceEEEEEeecCCchhhhccc-------ccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccch
Confidence             23555555555799999865       459999999999999   899999999999999    889999888776665


Q ss_pred             h
Q 042769          546 M  546 (549)
Q Consensus       546 m  546 (549)
                      .
T Consensus       168 a  168 (348)
T d2gfsa1         168 A  168 (348)
T ss_dssp             -
T ss_pred             h
Confidence            4

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.1e-20  Score=187.65  Aligned_cols=132  Identities=27%  Similarity=0.321  Sum_probs=106.8

Q ss_pred             eeeeecccccccCCceEEEe-eeecCchhHHHHHHH-----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC------cc
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVR-----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND------KD  474 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~-----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~------~~  474 (549)
                      +.|++.++||+|+||+||++ ++.+|+.||||++..     ....++.+|+..|.. ++|||||+++++|..      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~-l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC-VNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCTTBCCCSEEECSCCSTTTCC
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHh-cCCCCeeEEEEEEecccccccCc
Confidence            45999999999999999884 678899999998763     234467789966655 599999999999863      46


Q ss_pred             eEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          475 FVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       475 ~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      .+|+|||||.|+|.+.+..        .+++..++.++.|+   |+|||++||+|||||    |++.++..++.++.+.+
T Consensus        96 ~~~iv~Ey~~~~l~~~~~~--------~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~  167 (355)
T d2b1pa1          96 DVYLVMELMDANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR  167 (355)
T ss_dssp             EEEEEEECCSEEHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             eeEEEEeccchHHHHhhhc--------CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhh
Confidence            7999999999877776643        58899999999999   889999999999999    88888888777666544

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-19  Score=184.05  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             eeecccccccCCceEEEe-eeecCc----hhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEE
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGR----PVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLS  479 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~----~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLV  479 (549)
                      |++.++||+|+||+||++ ...+|+    +||+|++...    ..+.+.+|+..|.++ +|||||+++++|.++. .+++
T Consensus        11 y~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~HpnIv~l~g~~~~~~-~~~v   88 (317)
T d1xkka_          11 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DNPHVCRLLGICLTST-VQLI   88 (317)
T ss_dssp             EEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHC-CCTTBCCEEEEEESSS-EEEE
T ss_pred             CEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhC-CCCCEeeEEEEEecCC-eeEE
Confidence            999999999999998874 445554    5788866432    234577899776555 9999999999998765 5566


Q ss_pred             ecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhh
Q 042769          480 LERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMR  547 (549)
Q Consensus       480 mE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmr  547 (549)
                      ||+|. |+|.+++..     ....+++..++.++.|+   |+|||+++|||||||    |++.+|++++.+++|++
T Consensus        89 ~e~~~~~~l~~~~~~-----~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~  159 (317)
T d1xkka_          89 TQLMPFGCLLDYVRE-----HKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAK  159 (317)
T ss_dssp             EECCTTCBHHHHHHH-----TSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHH
T ss_pred             EEeccCCcccccccc-----cccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccce
Confidence            77765 799988876     24568999999999999   899999999999999    89999999998888776

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.6e-20  Score=187.06  Aligned_cols=137  Identities=21%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             cceeeeeecccccccCCceEEEe-e---eecCchhHHHHHHHH-------HhhhhHHHHHHHHhcCCCCCeeEEeeeccC
Q 042769          404 NVGKLFVSNTEIAKGSNGTVVYE-G---IYEGRPVAVKRLVRA-------LHDVAFKEIQNLIASDQHPNIVRWYGVEND  472 (549)
Q Consensus       404 ~igk~y~~~~~LG~G~fG~V~~~-~---~~~g~~VAVK~i~~~-------~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~  472 (549)
                      .+.+ |++.+.||+|+||+||++ .   ..+|+.||||++.+.       ..+.+.+|+..|.++..||||+++++++.+
T Consensus        22 ~l~~-y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~  100 (322)
T d1vzoa_          22 GIEN-FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT  100 (322)
T ss_dssp             CGGG-EEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEE
T ss_pred             chhc-eEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeecc
Confidence            3444 999999999999999884 2   346899999988643       234567899888777455899999999999


Q ss_pred             cceEEEEecccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhh
Q 042769          473 KDFVYLSLERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLS  544 (549)
Q Consensus       473 ~~~~yLVmE~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~  544 (549)
                      ....+++||||. |+|.+++..      .+.+++..+..++.|+   |+|||+++|+|||||    |++.+|..++.+++
T Consensus       101 ~~~~~~v~e~~~~~~L~~~i~~------~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG  174 (322)
T d1vzoa_         101 ETKLHLILDYINGGELFTHLSQ------RERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFG  174 (322)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHH------HSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred             CCceeeeeecccccHHHHHHHh------cccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeecc
Confidence            999999999998 599999987      4568889999999999   899999999999999    89999998888887


Q ss_pred             hhh
Q 042769          545 LMR  547 (549)
Q Consensus       545 Lmr  547 (549)
                      +++
T Consensus       175 ~a~  177 (322)
T d1vzoa_         175 LSK  177 (322)
T ss_dssp             EEE
T ss_pred             chh
Confidence            765

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=9e-20  Score=183.44  Aligned_cols=139  Identities=20%  Similarity=0.146  Sum_probs=113.1

Q ss_pred             eeeecccccccCCceEEEeee------ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYEGI------YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~~~------~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.+.||+|+||+||++..      .+++.||||++...    ..+.+.+|+..|.++ +||||++++++|...+..+
T Consensus        14 ~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l-~h~niv~~~~~~~~~~~~~   92 (301)
T d1lufa_          14 NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVKLLGVCAVGKPMC   92 (301)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-CCTTBCCEEEEECSSSSCE
T ss_pred             HcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhc-CCCCcccceeeeccCCceE
Confidence            389999999999999887421      34678999987642    234578899776554 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC------------------CcccccCchhhhHHhhhe---eecccceeEEEeecc----c
Q 042769          478 LSLERCT-CSLDDLIQTYSDS------------------SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----L  531 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~------------------~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----L  531 (549)
                      ++||||. |+|.++++.....                  .....+++..+..++.|+   |+|||+++|||||||    |
T Consensus        93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NIL  172 (301)
T d1lufa_          93 LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCL  172 (301)
T ss_dssp             EEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceE
Confidence            9999997 7999999753210                  112347888899999999   899999999999999    8


Q ss_pred             cccCCCCchhhhhhhh
Q 042769          532 WKADGHPSPLLLSLMR  547 (549)
Q Consensus       532 l~~~G~p~~~l~~Lmr  547 (549)
                      ++.++.+++.++++++
T Consensus       173 ld~~~~~Kl~DFGls~  188 (301)
T d1lufa_         173 VGENMVVKIADFGLSR  188 (301)
T ss_dssp             ECGGGCEEECCCSCHH
T ss_pred             ECCCCcEEEccchhhe
Confidence            9999999998888765

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-19  Score=182.52  Aligned_cols=140  Identities=18%  Similarity=0.116  Sum_probs=112.7

Q ss_pred             eeeecccccccCCceEEEe-ee-----ecCchhHHHHHHHH----HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEE
Q 042769          408 LFVSNTEIAKGSNGTVVYE-GI-----YEGRPVAVKRLVRA----LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVY  477 (549)
Q Consensus       408 ~y~~~~~LG~G~fG~V~~~-~~-----~~g~~VAVK~i~~~----~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~y  477 (549)
                      .|++.+.||+|+||+||.+ ..     .+++.||||+++..    ....+.+|+..+.++ +|||||++++++...+..+
T Consensus        21 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l-~h~nIv~~~~~~~~~~~~~   99 (308)
T d1p4oa_          21 KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF-NCHHVVRLLGVVSQGQPTL   99 (308)
T ss_dssp             GEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC-CCTTBCCEEEEECSSSSCE
T ss_pred             HeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHc-CCCCEeeeeeEEecCCcee
Confidence            4889999999999998873 22     34678999988642    223467899666555 9999999999999999999


Q ss_pred             EEecccc-cchhhhhhhcccC----CcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          478 LSLERCT-CSLDDLIQTYSDS----SCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       478 LVmE~~~-GsL~~~L~~~~~~----~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      +|||||. |+|.+++...+..    .....++...+..++.|+   |.|||+++|+|||||    |++.++++++.+++|
T Consensus       100 lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGl  179 (308)
T d1p4oa_         100 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM  179 (308)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTC
T ss_pred             EEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeeccc
Confidence            9999997 7999998763211    111346777888899998   899999999999999    899999999999988


Q ss_pred             hhc
Q 042769          546 MRL  548 (549)
Q Consensus       546 mrd  548 (549)
                      +|.
T Consensus       180 a~~  182 (308)
T d1p4oa_         180 TRD  182 (308)
T ss_dssp             CCG
T ss_pred             cee
Confidence            763

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=1.8e-19  Score=180.67  Aligned_cols=138  Identities=17%  Similarity=0.160  Sum_probs=111.9

Q ss_pred             ceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEecc
Q 042769          405 VGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSLER  482 (549)
Q Consensus       405 igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVmE~  482 (549)
                      +++.|++.++||+|+||+||++ +..+|+.||||++... ....+.+|++.+..+.+|+||+.+++++......|+||||
T Consensus         3 ig~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           3 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CCCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            4666999999999999998884 6778999999976532 2345677887776665669999999999999999999999


Q ss_pred             cccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----cccc-----CCCCchhhhhhhh
Q 042769          483 CTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKA-----DGHPSPLLLSLMR  547 (549)
Q Consensus       483 ~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~-----~G~p~~~l~~Lmr  547 (549)
                      |.|+|.++++..     ...+++..+..++.|+   |+|||+++|||||||    |++.     +|..+..++++.+
T Consensus        83 ~~~~l~~~~~~~-----~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~  154 (293)
T d1csna_          83 LGPSLEDLLDLC-----GRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  154 (293)
T ss_dssp             CCCBHHHHHHHT-----TTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             cCCCHHHHHHhh-----ccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeE
Confidence            999999998762     3468999999999999   899999999999999    6654     3445555555543

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.7e-19  Score=179.31  Aligned_cols=140  Identities=20%  Similarity=0.171  Sum_probs=108.3

Q ss_pred             ccceeeeeecccccccCCceEEEe-eeecCchhHHHHHHHH-HhhhhHHHHHHHHhcCCCCCeeEEeeeccCcceEEEEe
Q 042769          403 RNVGKLFVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA-LHDVAFKEIQNLIASDQHPNIVRWYGVENDKDFVYLSL  480 (549)
Q Consensus       403 ~~igk~y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~-~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~~~~~yLVm  480 (549)
                      .++|++|++.+.||+|+||.||++ +..+|+.||||++... ..+.+.+|++.+..+..|++|+.+.+++...+..++||
T Consensus         3 ~~vg~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivm   82 (299)
T d1ckia_           3 LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   82 (299)
T ss_dssp             CEETTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             CeECCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEE
Confidence            457777999999999999998884 6678999999976543 23456788877666634455666777778888999999


Q ss_pred             cccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccc---cCCCCchhhhhhhh
Q 042769          481 ERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWK---ADGHPSPLLLSLMR  547 (549)
Q Consensus       481 E~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~---~~G~p~~~l~~Lmr  547 (549)
                      |||+|+|.+.+..     ....+++..+..++.|+   |+|||+++|||||||    |+.   .+...++.++++++
T Consensus        83 e~~~~~l~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~  154 (299)
T d1ckia_          83 ELLGPSLEDLFNF-----CSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK  154 (299)
T ss_dssp             ECCCCBHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCE
T ss_pred             EEcCCchhhhhhh-----ccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcce
Confidence            9999888877765     24579999999999999   899999999999999    433   33344455665554

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.8e-19  Score=178.08  Aligned_cols=133  Identities=20%  Similarity=0.102  Sum_probs=106.3

Q ss_pred             eecccccccCCceEEEee-eec---CchhHHHHHHH----HHhhhhHHHHHHHHhcCCCCCeeEEeeeccC-cceEEEEe
Q 042769          410 VSNTEIAKGSNGTVVYEG-IYE---GRPVAVKRLVR----ALHDVAFKEIQNLIASDQHPNIVRWYGVEND-KDFVYLSL  480 (549)
Q Consensus       410 ~~~~~LG~G~fG~V~~~~-~~~---g~~VAVK~i~~----~~~~~~~~Ei~~L~~~l~HpNIVrl~g~~~~-~~~~yLVm  480 (549)
                      ...++||+|+||+||+.. ..+   ...||||++++    ...+.+.+|+..|.+ ++|||||+++|++.. +...++||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~-l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD-FSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHT-CCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHh-CCCCCEeEEeEEEEecCCceEEEE
Confidence            336789999999988742 222   23689997753    234567899976655 499999999999764 56899999


Q ss_pred             cccc-cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhhhhc
Q 042769          481 ERCT-CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSLMRL  548 (549)
Q Consensus       481 E~~~-GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~Lmrd  548 (549)
                      |||+ |+|.+++..     ....+++..+..++.|+   |.|||+++|+|||||    |+++++.+++.++++++.
T Consensus       109 E~~~~g~l~~~~~~-----~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         109 PYMKHGDLRNFIRN-----ETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARD  179 (311)
T ss_dssp             ECCTTCBHHHHHHC-----TTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCC
T ss_pred             EEeecCchhhhhcc-----ccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhh
Confidence            9998 699998876     23456777888999999   899999999999999    899999999999988874

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.2e-19  Score=180.16  Aligned_cols=137  Identities=24%  Similarity=0.309  Sum_probs=106.9

Q ss_pred             eeeeecccccccCCceEEEe-eeec-CchhHHHHHHHH-----HhhhhHHHHHHHHh--cCCCCCeeEEeeecc-----C
Q 042769          407 KLFVSNTEIAKGSNGTVVYE-GIYE-GRPVAVKRLVRA-----LHDVAFKEIQNLIA--SDQHPNIVRWYGVEN-----D  472 (549)
Q Consensus       407 k~y~~~~~LG~G~fG~V~~~-~~~~-g~~VAVK~i~~~-----~~~~~~~Ei~~L~~--~l~HpNIVrl~g~~~-----~  472 (549)
                      ++|++.++||+|+||+||++ +..+ ++.||||++...     ......+|+..|..  ..+|||||+++++|.     .
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~   86 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   86 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccccc
Confidence            45999999999999998885 4444 677999987642     12245678765443  348999999999985     3


Q ss_pred             cceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCchhhhhh
Q 042769          473 KDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSPLLLSL  545 (549)
Q Consensus       473 ~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~~l~~L  545 (549)
                      ...+|++||+|.|.+..+....    ....+++..++.++.|+   |+|||+++|||||||    |++.+|.+++.++++
T Consensus        87 ~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~  162 (305)
T d1blxa_          87 ETKLTLVFEHVDQDLTTYLDKV----PEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL  162 (305)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHS----CTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCS
T ss_pred             CceEEEEEEeccCCchhhhhhc----cCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhh
Confidence            4578999999997555444431    24568999999999999   899999999999999    889999988887776


Q ss_pred             hh
Q 042769          546 MR  547 (549)
Q Consensus       546 mr  547 (549)
                      ++
T Consensus       163 ~~  164 (305)
T d1blxa_         163 AR  164 (305)
T ss_dssp             CC
T ss_pred             hh
Confidence            54

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.37  E-value=3.3e-14  Score=132.52  Aligned_cols=122  Identities=13%  Similarity=-0.028  Sum_probs=86.7

Q ss_pred             eeecccccccCCceEEEeeeecCchhHHHHHHHH---------------------HhhhhHHHHHHHHhcCCCCCeeEEe
Q 042769          409 FVSNTEIAKGSNGTVVYEGIYEGRPVAVKRLVRA---------------------LHDVAFKEIQNLIASDQHPNIVRWY  467 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~~~~~g~~VAVK~i~~~---------------------~~~~~~~Ei~~L~~~l~HpNIVrl~  467 (549)
                      +.++++||+|+||+||.+...+|+.||||+++..                     ......+|+..+.++ .|++++..+
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL-QGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT-TTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHc-cCCCcceEE
Confidence            3467799999999988865567999999954311                     111234567666555 899999888


Q ss_pred             eeccCcceEEEEecccccchhhhhhhcccCCcccccCchhhhHHhhhe---eecccceeEEEeecc----ccccCCCCch
Q 042769          468 GVENDKDFVYLSLERCTCSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDSVKVIIRDLS----LWKADGHPSP  540 (549)
Q Consensus       468 g~~~~~~~~yLVmE~~~GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~~~IIHRDLK----Ll~~~G~p~~  540 (549)
                      ++..    .+++|||+++....            .+++..+..++.|+   |+|||+++|+|||||    |++.+| +..
T Consensus        81 ~~~~----~~lvme~~~~~~~~------------~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~-~~l  143 (191)
T d1zara2          81 AWEG----NAVLMELIDAKELY------------RVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IWI  143 (191)
T ss_dssp             EEET----TEEEEECCCCEEGG------------GCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTE-EEE
T ss_pred             EecC----CEEEEEeecccccc------------chhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCC-EEE
Confidence            7643    36999999863211            14445566777777   889999999999999    676544 666


Q ss_pred             hhhhhhhc
Q 042769          541 LLLSLMRL  548 (549)
Q Consensus       541 ~l~~Lmrd  548 (549)
                      .++++|++
T Consensus       144 iDFG~a~~  151 (191)
T d1zara2         144 IDFPQSVE  151 (191)
T ss_dssp             CCCTTCEE
T ss_pred             EECCCccc
Confidence            67777654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.4e-14  Score=146.04  Aligned_cols=125  Identities=17%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             eeecccccccCCceEEEe-eeecCchhHHHHHHHH--HhhhhHHHHHHHHhc----------CCCCCeeEEeeeccCc--
Q 042769          409 FVSNTEIAKGSNGTVVYE-GIYEGRPVAVKRLVRA--LHDVAFKEIQNLIAS----------DQHPNIVRWYGVENDK--  473 (549)
Q Consensus       409 y~~~~~LG~G~fG~V~~~-~~~~g~~VAVK~i~~~--~~~~~~~Ei~~L~~~----------l~HpNIVrl~g~~~~~--  473 (549)
                      |++.++||+|+||+||++ ++.+|+.||||++++.  ..+...+|+..+..+          +.|+|||++++++...  
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~   94 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGP   94 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEET
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccc
Confidence            999999999999998884 6788999999987642  233456676554332          2578999999887654  


Q ss_pred             ceEEEEecccc--cchhhhhhhcccCCcccccCchhhhHHhhhe---eecccc-eeEEEeecc----ccccCCC
Q 042769          474 DFVYLSLERCT--CSLDDLIQTYSDSSCNSVFGEDQATRAMIEY---KLRLDS-VKVIIRDLS----LWKADGH  537 (549)
Q Consensus       474 ~~~yLVmE~~~--GsL~~~L~~~~~~~~~~~l~~~~~~~i~~qi---L~yLH~-~~IIHRDLK----Ll~~~G~  537 (549)
                      ...+++|+++.  ++........    ....+++..++.++.|+   |+|||+ .||+|||||    |++.+|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~  164 (362)
T d1q8ya_          95 NGVHVVMVFEVLGENLLALIKKY----EHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDS  164 (362)
T ss_dssp             TEEEEEEEECCCCEEHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEET
T ss_pred             cceeeeeeecccccccccccccc----cccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCc
Confidence            34566666653  3444444331    25678899999999999   889997 899999999    7766654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=99.26  E-value=1.2e-12  Score=142.11  Aligned_cols=132  Identities=12%  Similarity=0.180  Sum_probs=100.0

Q ss_pred             ceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchh-----------hhhhcC
Q 042769            2 SWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID-----------DYVKTA   67 (549)
Q Consensus         2 ~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----------~~v~~s   67 (549)
                      .|+|++++.  +.|+              |.+.++.+|.++.++.|||+|+ +|+++|.|+..           ..+.+.
T Consensus        58 aW~~~~~~~~~~~st--------------Piv~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g  123 (573)
T d1kb0a2          58 AWSYNLESTRGVEAT--------------PVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG  123 (573)
T ss_dssp             EEEEECCCCSCCCCC--------------CEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC
T ss_pred             EEEEECCCCCCcEEC--------------CEEECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCccccccccccccccc
Confidence            599888753  4555              8888999899999999999999 99999998753           233456


Q ss_pred             CCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEE
Q 042769           68 PHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLL  147 (549)
Q Consensus        68 P~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (549)
                      +++. ++.||+++-++.+|||||+||+++|++...+...       ..  +             ..+.++.+   -.+.|
T Consensus       124 ~~~~-~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~-------~~--~-------------~~~~~p~v---~~~~v  177 (573)
T d1kb0a2         124 VALW-KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK-------GS--L-------------TITGAPRV---FKGKV  177 (573)
T ss_dssp             CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC-------SS--C-------------BCCSCCEE---ETTEE
T ss_pred             ceEE-CCcEEEEecccceeeeccccccceecccCccCCc-------ce--E-------------EeecceEE---EeccE
Confidence            6666 7889999999999999999999999987643111       00  0             01222222   12789


Q ss_pred             EEEcc------cceeecccCCCCCceeeeeee
Q 042769          148 FITRT------DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       148 ~i~r~------d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      |||..      .+.|+|+|++||+++|.+.+.
T Consensus       178 ivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  209 (573)
T d1kb0a2         178 IIGNGGAEYGVRGYITAYDAETGERKWRWFSV  209 (573)
T ss_dssp             EECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             EEeeccccccccceEEEEecCCccceeeeeec
Confidence            99865      458999999999999999764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=1.5e-12  Score=141.82  Aligned_cols=141  Identities=15%  Similarity=0.216  Sum_probs=99.6

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchhh---------hhhcCCCc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDD---------YVKTAPHI   70 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~---------~v~~sP~~   70 (549)
                      +.|+|.+|+..-.+.|+.          |.+.++.+|.++-++.|||+|+ +|+++|.|+...         .+.+.+++
T Consensus        46 ~aW~~~~g~~~~~~~~st----------Piv~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~  115 (582)
T d1flga_          46 PAWSYSFGDEKQRGQESQ----------AIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI  115 (582)
T ss_dssp             EEEEEECCTTCCSCCCCC----------CEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE
T ss_pred             EEEEEeCCCCCCCCcccC----------CEEECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE
Confidence            359999998766555554          8888889889999999999999 999999987642         34445666


Q ss_pred             ccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEE
Q 042769           71 TEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFIT  150 (549)
Q Consensus        71 ~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~  150 (549)
                      . ++.||+|+.++.+|||||+||+++|+....+.....         ...   ..+..+++.     ..    .+.++|.
T Consensus       116 ~-~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~---------~~~---~~p~~~~~~-----~~----~~~~~i~  173 (582)
T d1flga_         116 Y-GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGY---------TMT---GAPTIVKDG-----KT----GKVLLIH  173 (582)
T ss_dssp             E-TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTC---------BCC---SCCEEEECT-----TT----CCEEEEE
T ss_pred             e-CCceEEecCCCeEEEecccccceeeeecccCCCccc---------eee---cCceEecCC-----cE----eEEEEEe
Confidence            6 778999999999999999999999998775411000         000   001111111     11    0334443


Q ss_pred             -c------ccceeecccCCCCCceeeeeee
Q 042769          151 -R------TDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       151 -r------~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                       .      ..+.|+|+|++||+++|.+.+.
T Consensus       174 g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~  203 (582)
T d1flga_         174 GSSGDEFGVVGRLFARDPDTGEEIWMRPFV  203 (582)
T ss_dssp             CCBCGGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred             CccccccccccceEEecCCCCcEEEEEecc
Confidence             2      3568999999999999998653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=99.22  E-value=2.5e-12  Score=139.27  Aligned_cols=132  Identities=12%  Similarity=0.210  Sum_probs=98.5

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchh-----------hhhhc
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID-----------DYVKT   66 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----------~~v~~   66 (549)
                      +.|+|++++.  +.|+              |.+.++.+|.++.++.|||+|+ +|+++|.|+.+           ..+..
T Consensus        46 ~aW~~~~~~~~~~~st--------------Piv~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~  111 (560)
T d1kv9a2          46 LAWYMDLDNTRGLEAT--------------PLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR  111 (560)
T ss_dssp             EEEEEECSCCSCCCCC--------------CEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC
T ss_pred             EEEEEECCCCCCcEeC--------------CEEECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccccccc
Confidence            3699999774  3455              8999999999999999999999 99999998642           12233


Q ss_pred             CCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceE
Q 042769           67 APHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYL  146 (549)
Q Consensus        67 sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (549)
                      .+++. ++.||++.-++.+|||||+||+++|++...+.....                       ....++.+   ..+.
T Consensus       112 ~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~-----------------------~~~~~p~v---~~~~  164 (560)
T d1kv9a2         112 GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY-----------------------SITGAPRV---VKGK  164 (560)
T ss_dssp             CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC-----------------------BCCSCCEE---ETTE
T ss_pred             Cccee-CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccce-----------------------eeeeeeee---ecCc
Confidence            44455 677999999999999999999999998775411100                       00122222   1268


Q ss_pred             EEEEccc------ceeecccCCCCCceeeeeee
Q 042769          147 LFITRTD------YTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       147 v~i~r~d------~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      |+++...      +.|+|+|++||+++|++.+.
T Consensus       165 vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         165 VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             EEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             ccccccceeccccceEEEEECCCceEEeeeeec
Confidence            8888653      57999999999999999865

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.18  E-value=5.8e-12  Score=136.72  Aligned_cols=134  Identities=14%  Similarity=0.202  Sum_probs=98.5

Q ss_pred             CceeccCCCc--cccccccceeeeeccccccccccceeeecC-Ccchhhhccc-c-ccccCCcchhhhhh----------
Q 042769            1 VSWTFGTGTP--IYSSYQAPVQATVDQDNASELTNSFFIDCG-EDWGLYAHGL-L-GRMKLPQSIDDYVK----------   65 (549)
Q Consensus         1 ~~W~f~tg~~--i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~ly~~~~-~-g~~~~~~~~~~~v~----------   65 (549)
                      +.|+|++|+.  +-++              |.+.++.+|+++ .++.|||+|+ + |+++|.|+.+.-..          
T Consensus        42 ~aW~~~~g~~~~~~~t--------------P~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~  107 (571)
T d2ad6a1          42 AAWSFSTGVLNGHEGA--------------PLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVV  107 (571)
T ss_dssp             EEEEEECSCCSCCCSC--------------CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSC
T ss_pred             EEEEEeCCCCCCcccC--------------CEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcC
Confidence            3699999863  2333              888888877765 5799999997 4 99999997543322          


Q ss_pred             -cCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCc
Q 042769           66 -TAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEP  144 (549)
Q Consensus        66 -~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (549)
                       +.+++. +|.||+++.++.+|||||+||+++|++...+...                       ....+.++.+.   .
T Consensus       108 ~rg~a~~-~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~-----------------------~~~~t~~p~v~---~  160 (571)
T d2ad6a1         108 DRGLAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV-----------------------GSTLTQAPFVA---K  160 (571)
T ss_dssp             CCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-----------------------TCBCCSCCEEE---T
T ss_pred             CCcceee-CCeEEEEeCCCcEEeeehhhhhhhcccccccccc-----------------------ccceeecCeEe---C
Confidence             344555 7899999999999999999999999997753100                       00112232321   2


Q ss_pred             eEEEEEcc------cceeecccCCCCCceeeeeeehh
Q 042769          145 YLLFITRT------DYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       145 ~~v~i~r~------d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      +.||++..      ++.|+|+|++||+++|.+....-
T Consensus       161 ~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~  197 (571)
T d2ad6a1         161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS  197 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCC
Confidence            78999875      67899999999999999876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.10  E-value=2.3e-11  Score=132.56  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=94.3

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeee-cCCcchhhhccc--cccccCCcchhhhhhcCC---------
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFID-CGEDWGLYAHGL--LGRMKLPQSIDDYVKTAP---------   68 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~ly~~~~--~g~~~~~~~~~~~v~~sP---------   68 (549)
                      +.|+|++|+.  ...|+.          |.+.++.+|. ++.++.+||+|+  +|++.|.|+.+.-....+         
T Consensus        42 ~aW~~~~~~~--~~~~~t----------Piv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R  109 (596)
T d1w6sa_          42 PAWTFSTGLL--NGHEGA----------PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR  109 (596)
T ss_dssp             EEEEEECSCC--SCCCSC----------CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC
T ss_pred             EEEEEECCCC--CCceeC----------CEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc
Confidence            3699999753  223322          8888888555 566899999995  699999997643222111         


Q ss_pred             --Cccc-c----cceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccc
Q 042769           69 --HITE-E----GAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQH  141 (549)
Q Consensus        69 --~~~~-d----g~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (549)
                        ++.. +    ..||+|+.++.+|||||+||+++|++...+...                       ....+.++.+. 
T Consensus       110 Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~-----------------------~~~~t~~P~v~-  165 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV-----------------------GSTLTIAPYVV-  165 (596)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-----------------------TCBCCSCCEEE-
T ss_pred             eeEEecCCCCCceEEEEEeCCCCeEeeccccCceecccccccccc-----------------------ccccccCCcEE-
Confidence              1110 1    149999999999999999999999997653100                       00112333331 


Q ss_pred             cCceEEEEEccc------ceeecccCCCCCceeeeeeeh
Q 042769          142 KEPYLLFITRTD------YTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       142 ~~~~~v~i~r~d------~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                        .+.||||...      +.|+|+|++||+++|.+.+..
T Consensus       166 --~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~  202 (596)
T d1w6sa_         166 --KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (596)
T ss_dssp             --TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             --CCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence              3799999764      899999999999999988764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.94  E-value=2.2e-10  Score=124.06  Aligned_cols=165  Identities=12%  Similarity=0.101  Sum_probs=104.4

Q ss_pred             CceeccCCCccccccccceeeeeccccccccccceeeecCCcchhhhccc-cccccCCcchh-----hhhhcCCCccccc
Q 042769            1 VSWTFGTGTPIYSSYQAPVQATVDQDNASELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSID-----DYVKTAPHITEEG   74 (549)
Q Consensus         1 ~~W~f~tg~~i~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----~~v~~sP~~~~dg   74 (549)
                      ++|+|....+..+..-   .......+..++..+.+|.++.||.|||+|+ +|++.|.+.+.     ..+.++|+|. ++
T Consensus        86 ~~W~~~~~~~~~~~~~---~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~  161 (571)
T d2ad6a1          86 IVWQHKPKQDASTKAV---MCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD  161 (571)
T ss_dssp             EEEEECCCCCGGGGGG---CTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT
T ss_pred             eEEEecCCCCcccccc---cccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CC
Confidence            3799887766544311   0000111235666777888889999999999 99999988653     4678999999 88


Q ss_pred             ceeecce------eeEEEEEEccccceeeecCCCCCCccccch-------hhhcccccccc--------cchHHHHhhcc
Q 042769           75 AVTLGSK------TTTVFVLEAKTGRLIRTYGSPHSSSTLQNE-------EQKSASYKHDK--------VNNEQLVKSGL  133 (549)
Q Consensus        75 ~v~~Gsk------~~~~~~vda~tG~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~~~~~~~~  133 (549)
                      .||+|..      .+.++|+|++||+++|++.+..........       ...........        ......|....
T Consensus       162 ~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s  241 (571)
T d2ad6a1         162 TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA  241 (571)
T ss_dssp             EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred             eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccc
Confidence            9999984      789999999999999998876411100000       00000000000        00001122222


Q ss_pred             CccccccccCceEEEEEcc----------------cceeecccCCCCCceeeeeeehh
Q 042769          134 TNTAELQHKEPYLLFITRT----------------DYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       134 ~~~~~~~~~~~~~v~i~r~----------------d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      .++      +.+++|++..                ...|.|+|.+||+++|.+.....
T Consensus       242 ~D~------~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~  293 (571)
T d2ad6a1         242 YDP------KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             EET------TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             cch------hcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCc
Confidence            232      3378999876                34799999999999999876543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.92  E-value=2.5e-10  Score=123.81  Aligned_cols=98  Identities=19%  Similarity=0.312  Sum_probs=73.4

Q ss_pred             cCCcchhhh----hhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCC--CccccchhhhcccccccccchHHH
Q 042769           55 KLPQSIDDY----VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHS--SSTLQNEEQKSASYKHDKVNNEQL  128 (549)
Q Consensus        55 ~~~~~~~~~----v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  128 (549)
                      +|.|.+++.    ..++|++. ||+||+++-++.+|||||+||+++|+|.....  ..+.+.       .++        
T Consensus        47 aW~~~~g~~~~~~~~stPiv~-~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~-------~~~--------  110 (582)
T d1flga_          47 AWSYSFGDEKQRGQESQAIVS-DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCD-------VVN--------  110 (582)
T ss_dssp             EEEEECCTTCCSCCCCCCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSC-------SCC--------
T ss_pred             EEEEeCCCCCCCCcccCCEEE-CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccc-------ccc--------
Confidence            688887553    35899999 99999999999999999999999999865321  000000       000        


Q ss_pred             HhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhhh
Q 042769          129 VKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIGY  177 (549)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~a  177 (549)
                           ..+...    .+.||++..|+.|+|+|++||+++|+..+++...
T Consensus       111 -----rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~  150 (582)
T d1flga_         111 -----RGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA  150 (582)
T ss_dssp             -----CCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG
T ss_pred             -----CCceEe----CCceEEecCCCeEEEecccccceeeeecccCCCc
Confidence                 011111    2689999999999999999999999999987654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.86  E-value=4.9e-10  Score=120.95  Aligned_cols=101  Identities=12%  Similarity=0.238  Sum_probs=73.4

Q ss_pred             cCCcchhhh--hhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhc
Q 042769           55 KLPQSIDDY--VKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSG  132 (549)
Q Consensus        55 ~~~~~~~~~--v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (549)
                      +|.|++++.  +.++|++. ||+||+++-++.+|||||+||+++|+|.............+.                 .
T Consensus        47 aW~~~~~~~~~~~stPiv~-~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~-----------------~  108 (560)
T d1kv9a2          47 AWYMDLDNTRGLEATPLFH-DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD-----------------A  108 (560)
T ss_dssp             EEEEECSCCSCCCCCCEEE-TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC-----------------S
T ss_pred             EEEEECCCCCCcEeCCEEE-CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccc-----------------c
Confidence            688888664  67999999 999999999999999999999999999643210000000000                 0


Q ss_pred             cCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehhh
Q 042769          133 LTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       133 ~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      .......   ..+.||++..|+.|+|||++||+++|++...+..
T Consensus       109 ~~~~~~~---~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~  149 (560)
T d1kv9a2         109 VNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA  149 (560)
T ss_dssp             CCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTT
T ss_pred             cccCcce---eCCeEEEEeCCCEEEEEECCCCcEEeccCccCcc
Confidence            0001111   1268999999999999999999999999887653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.84  E-value=8.7e-10  Score=119.86  Aligned_cols=136  Identities=10%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             ceeeecCCcchhhhccc-cccccCCcchh-----hhhhcCCCcccccceeecce------eeEEEEEEccccceeeecCC
Q 042769           34 SFFIDCGEDWGLYAHGL-LGRMKLPQSID-----DYVKTAPHITEEGAVTLGSK------TTTVFVLEAKTGRLIRTYGS  101 (549)
Q Consensus        34 ~~~~~~~~d~~ly~~~~-~g~~~~~~~~~-----~~v~~sP~~~~dg~v~~Gsk------~~~~~~vda~tG~~~~~~~~  101 (549)
                      ..++.++.|+.|||+|+ +|++.|.|...     ..+.++|.|. ++.||+|+-      .+.++|+|++||+++|+|.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            35788889999999999 99999998653     3689999999 889999974      48999999999999999877


Q ss_pred             CCCC-ccccchh-------hhcccccccc-------cchHHHHhhccCccccccccCceEEEEEccc-------------
Q 042769          102 PHSS-STLQNEE-------QKSASYKHDK-------VNNEQLVKSGLTNTAELQHKEPYLLFITRTD-------------  153 (549)
Q Consensus       102 ~~~~-~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d-------------  153 (549)
                      .... ++....+       -.......+.       ......|.+...++      +.++||++..+             
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~------~~~lvy~~tg~~~p~~~~~r~g~n  274 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP------GTNLIYFGTGNPAPWNETMRPGDN  274 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET------TTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc------CCCeeecccccccccccccccccc
Confidence            5310 0000000       0000000000       00011122222222      34899999643             


Q ss_pred             ---ceeecccCCCCCceeeeeeehhh
Q 042769          154 ---YTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       154 ---~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                         ..|.|+|++||+++|.+......
T Consensus       275 ~ys~sivAlD~~TG~~~W~~Q~~~~D  300 (596)
T d1w6sa_         275 KWTMTIFGRDADTGEAKFGYQKTPHD  300 (596)
T ss_dssp             TTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccccccccccccccceecc
Confidence               34889999999999998776544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.76  E-value=1.1e-09  Score=118.32  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             cCCcchhh--hhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhc
Q 042769           55 KLPQSIDD--YVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSG  132 (549)
Q Consensus        55 ~~~~~~~~--~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (549)
                      +|.|.++.  -++++|+|. ||+||+++-++.+|||||+||+++|+|.............+.   .+             
T Consensus        58 aW~~~~~~~~~~~stPiv~-~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~---~~-------------  120 (573)
T d1kb0a2          58 AWSYNLESTRGVEATPVVV-DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD---VV-------------  120 (573)
T ss_dssp             EEEEECCCCSCCCCCCEEE-TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC---SC-------------
T ss_pred             EEEEECCCCCCcEECCEEE-CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccc---cc-------------
Confidence            68777764  468999999 999999999999999999999999999764310000000000   00             


Q ss_pred             cCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehh
Q 042769          133 LTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       133 ~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      ...+...    .+.||++..|+.|+|+|++||+++|+....+.
T Consensus       121 ~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~  159 (573)
T d1kb0a2         121 NRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQNTFEG  159 (573)
T ss_dssp             CCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred             cccceEE----CCcEEEEecccceeeeccccccceecccCccC
Confidence            0011111    26899999999999999999999999987643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.63  E-value=0.0035  Score=58.65  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh--hhhcCCCcccccc-ee-ecceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD--YVKTAPHITEEGA-VT-LGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~--~v~~sP~~~~dg~-v~-~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      .++.++.|+.|+.+|. ++.....+.+++  .--.+.++++||. +| .|+.++.++++|.+||+++++...+.......
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            4688899999999998 666544444332  2234667788985 55 56889999999999999999887654211000


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEc------------ccceeecccCCCCCceeeeeeehh
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR------------TDYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r------------~d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                        ....                ...++..      ..+|++.            .+..++.+|..+++.++.+.....
T Consensus        83 --~~~~----------------v~~s~dg------~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  136 (337)
T d1pbyb_          83 --SLFG----------------AALSPDG------KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ  136 (337)
T ss_dssp             --CTTC----------------EEECTTS------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS
T ss_pred             --ceee----------------EEEcCCC------cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC
Confidence              0000                0011111      3555554            456788888889998888876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=93.96  E-value=0.044  Score=50.85  Aligned_cols=81  Identities=4%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             CCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceE
Q 042769           68 PHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYL  146 (549)
Q Consensus        68 P~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (549)
                      |+++.|| -+++|+.++++.++|.+||++++++..+....        ..++.              .+|..      ..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~--------p~~l~--------------~spDG------~~   53 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG--------PGTAM--------------MAPDN------RT   53 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCS--------SCEEE--------------ECTTS------SE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCC--------cceEE--------------ECCCC------CE
Confidence            5666666 45669999999999999999999998764211        00000              12211      46


Q ss_pred             EEEE-cccceeecccCCCCCceeeeeeehhh
Q 042769          147 LFIT-RTDYTLQSFEPNSDNVSWSMTVAEIG  176 (549)
Q Consensus       147 v~i~-r~d~~l~a~d~~~g~~~Wn~~~~~~~  176 (549)
                      +|+. +.++.|+.+|..+|++.+.+..+...
T Consensus        54 l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~   84 (346)
T d1jmxb_          54 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   84 (346)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             EEEEECCCCcEEEEeCccCeeeeeecccccc
Confidence            6665 57899999999999999988776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.70  E-value=0.038  Score=50.41  Aligned_cols=109  Identities=13%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-eee-cceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTL-GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~-Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .|+.+++|+.+..+|. +|+..-.+.++.-.. .-++++||. +|+ ++.++++..+|.+||+.+.++........+.  
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~--   80 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA--   80 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE--
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccc--
Confidence            3677889999999998 776644444433211 124666986 664 5678999999999999998876643111000  


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                            .++..     ...+..+..+..++..|..+++..+.+...
T Consensus        81 ----------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (301)
T d1l0qa2          81 ----------------------VSPDG-----KQVYVTNMASSTLSVIDTTSNTVAGTVKTG  115 (301)
T ss_dssp             ----------------------ECTTS-----SEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             ----------------------ccccc-----ccccccccccceeeecccccceeeeecccc
Confidence                                  11111     134444567788888898888888877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.05  Score=49.91  Aligned_cols=112  Identities=13%  Similarity=0.190  Sum_probs=74.5

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      .++.|+.||.++..|. .+.....+......-.+-... +..++.|+.|++++..|..+++....+.......       
T Consensus       189 ~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-------  260 (342)
T d2ovrb2         189 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ-------  260 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS-------
T ss_pred             EEEEEeCCCeEEEeecccceeeeEecccccceeEEecC-CCEEEEEcCCCEEEEEecccccccccccccceee-------
Confidence            4678889999988887 555433333322222222223 5678999999999999999999887776543110       


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeeehh
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      .                 ...+...    ++..++.++.|++|+..|.++|+...++.....
T Consensus       261 ~-----------------~~~~~~~----~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~  301 (342)
T d2ovrb2         261 S-----------------AVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  301 (342)
T ss_dssp             S-----------------CEEEEEE----CSSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             e-----------------ceeeccc----CCCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence            0                 0000000    126889999999999999999999988876544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.60  E-value=0.11  Score=47.69  Aligned_cols=73  Identities=3%  Similarity=0.048  Sum_probs=51.9

Q ss_pred             eeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEE-Ecccc
Q 042769           76 VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI-TRTDY  154 (549)
Q Consensus        76 v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i-~r~d~  154 (549)
                      +++++.+++++++|.+|++.++++..++...       .   +..           -..+|..      ..+|+ +..++
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~-------~---~~~-----------i~~spDg------~~l~v~~~~~~   56 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGP-------T---PMV-----------PMVAPGG------RIAYATVNKSE   56 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTT-------C---CCC-----------EEECTTS------SEEEEEETTTT
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCC-------C---ccE-----------EEECCCC------CEEEEEECCCC
Confidence            6788899999999999999999887654100       0   000           0012211      46665 57899


Q ss_pred             eeecccCCCCCceeeeeeehh
Q 042769          155 TLQSFEPNSDNVSWSMTVAEI  175 (549)
Q Consensus       155 ~l~a~d~~~g~~~Wn~~~~~~  175 (549)
                      .|+.+|.++|++++.+.....
T Consensus        57 ~v~v~D~~t~~~~~~~~~~~~   77 (337)
T d1pbyb_          57 SLVKIDLVTGETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEETTTCCEEEEEECCBT
T ss_pred             eEEEEECCCCcEEEEEecCCC
Confidence            999999999999999987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.20  E-value=0.11  Score=47.84  Aligned_cols=108  Identities=13%  Similarity=0.066  Sum_probs=69.3

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccc-ccceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITE-EGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~-dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      .++.+..|+.++..|. ++.....+.....-..+.+.+. +..+++|+.|++++..|..+|+.++.+.......      
T Consensus       173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v------  246 (355)
T d1nexb2         173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV------  246 (355)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC------
T ss_pred             eeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccc------
Confidence            3566777888877776 4443322222111111222222 4468899999999999999999998887543110      


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                                           .+ ...   ++..|+.|..|+.|+..|.+++..+......
T Consensus       247 ---------------------~~-~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  282 (355)
T d1nexb2         247 ---------------------GL-LRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHT  282 (355)
T ss_dssp             ---------------------CE-EEE---CSSEEEEECTTSEEEEEETTTCCEEEEEECT
T ss_pred             ---------------------cc-ccc---ccceeeeeecccccccccccccceecccccC
Confidence                                 00 001   1268999999999999999999887765443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.16  Score=46.46  Aligned_cols=62  Identities=8%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceee
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIR   97 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~   97 (549)
                      .++.|+.||.++..|. ++..++.+......... +.+.|+.+.+++.|+++..-|.+||+.+.
T Consensus       255 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~g~d~~i~vwd~~tg~~~~  317 (355)
T d1nexb2         255 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT-TFYVSDNILVSGSENQFNIYNLRSGKLVH  317 (355)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECTTCCCCC-EEEECSSEEEEEETTEEEEEETTTCCBCC
T ss_pred             eeeeeecccccccccccccceecccccCCceEEE-EEcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            3455555665555555 44443333333222211 12234444444445555555666665553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.03  E-value=0.087  Score=49.72  Aligned_cols=112  Identities=12%  Similarity=0.054  Sum_probs=71.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhh----hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCcccc
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDD----YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQ  109 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~----~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~  109 (549)
                      ++.|++||.++..|. .+.....+....    -|.-+|    || .+++|+.|+++..-|..+|+.++++.......   
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p----~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~---  234 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP----DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN---  234 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS---
T ss_pred             ecccccccccccccccccccccccccccccccccccCc----ccccccccccccccccccccccccccccccccccc---
Confidence            567889999988887 454433332211    234444    44 56679999999999999999998886643100   


Q ss_pred             chhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeeee
Q 042769          110 NEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      .+-..  .+.           ....++.      ...|+.|+.|++|+-.|.++|++.-.+...
T Consensus       235 ~~h~~--~V~-----------~~~~s~~------~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         235 VAHSG--SVF-----------GLTWSPD------GTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             CSSSS--CEE-----------EEEECTT------SSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ccccc--ccc-----------ccccCCC------CCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            00000  000           0011221      257889999999999999999988766554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.35  E-value=0.12  Score=46.38  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             cceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEccc
Q 042769           74 GAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTD  153 (549)
Q Consensus        74 g~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d  153 (549)
                      ..++.|+.|++++..|..+|+.+.++......  +     ..                ...++.      ...|+.|..|
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~--v-----~~----------------~~~~~~------~~~l~s~~~d  268 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW--V-----RG----------------VLFHSG------GKFILSCADD  268 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSSC--E-----EE----------------EEECSS------SSCEEEEETT
T ss_pred             ceeEeccCCCEEEEEECCCCcEEEEEeCCCCC--E-----EE----------------EEECCC------CCEEEEEECC
Confidence            35788999999999999999999887654310  0     00                001111      1478889999


Q ss_pred             ceeecccCCCCCceeeee
Q 042769          154 YTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       154 ~~l~a~d~~~g~~~Wn~~  171 (549)
                      +.|+.+|.++|++...+.
T Consensus       269 g~i~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         269 KTLRVWDYKNKRCMKTLN  286 (317)
T ss_dssp             TEEEEECCTTSCCCEEEE
T ss_pred             CeEEEEECCCCcEEEEEc
Confidence            999999999999887664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.097  Score=49.38  Aligned_cols=101  Identities=14%  Similarity=0.097  Sum_probs=64.7

Q ss_pred             eeecCCcchhhhccc-cccccCCcch-hhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccchh
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSI-DDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEE  112 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~-~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~  112 (549)
                      ++.++.|+.++..+. ++.....+.. .+.|. +-+++.+| .+++|+.+++++..|.++|+.+..+...+....+    
T Consensus       156 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l----  230 (337)
T d1gxra_         156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS-CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL----  230 (337)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE----
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccceeecccccccceEEE----
Confidence            567788888888886 4443222221 11111 11222343 6888999999999999999999887664311100    


Q ss_pred             hhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCce
Q 042769          113 QKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVS  167 (549)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~  167 (549)
                                          ..++.      ...+++|..|+.++.+|.++++..
T Consensus       231 --------------------~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~  259 (337)
T d1gxra_         231 --------------------GYCPT------GEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             --------------------EECTT------SSEEEEEETTSCEEEEETTSSCEE
T ss_pred             --------------------EEccc------ccccceeccccccccccccccccc
Confidence                                01221      258889999999999999888764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.47  E-value=0.067  Score=49.26  Aligned_cols=109  Identities=13%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCccccch
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNE  111 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~  111 (549)
                      .++.|+.|+.++..|. +|.....|...+ .|.+ =++++|| .+++|+.|++++..|..+++.+.++.......++.  
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~-v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~--  274 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT--  274 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE--
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEE-EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceE--
Confidence            3577888999888887 565544443211 1111 1122344 67889999999999999999988776543111000  


Q ss_pred             hhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          112 EQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                         .                ...++      ....|+.|..|+.|+.+|..+|+..-.+.
T Consensus       275 ---~----------------~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         275 ---S----------------VSFSK------SGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             ---E----------------EEECS------SSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ---E----------------EEECC------CCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence               0                00111      12589999999999999999998876553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=88.27  E-value=0.22  Score=45.70  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=50.4

Q ss_pred             ccceeecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcc
Q 042769           73 EGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRT  152 (549)
Q Consensus        73 dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~  152 (549)
                      ++.+..++ .+.++.+|..||+.++++..+.....+.                        .++.      ...||++..
T Consensus       263 ~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va------------------------~s~D------G~~l~v~~~  311 (346)
T d1jmxb_         263 DPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVA------------------------FDKK------GDKLYLGGT  311 (346)
T ss_dssp             CTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEE------------------------ECSS------SSCEEEESB
T ss_pred             CCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEE------------------------EcCC------CCEEEEEeC
Confidence            33444443 5679999999999999887654211110                        1221      268999999


Q ss_pred             cceeecccCCCCCceeeeeee
Q 042769          153 DYTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       153 d~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      |+.|+.+|.+|++...++++.
T Consensus       312 d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         312 FNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCcEEEEECccCCEEEEEECC
Confidence            999999999999999988774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.12  E-value=0.11  Score=51.09  Aligned_cols=117  Identities=4%  Similarity=-0.064  Sum_probs=74.5

Q ss_pred             cceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccc-eeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           33 NSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        33 ~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      +-+++..++||.+...|. +|+..-.+..++.++ +-++++||. +|+++.|+++..+|.+||+...+.......     
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~-----  105 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-----  105 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS-----
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC-----
Confidence            334677889999999999 777755555554443 235666885 789999999999999999866544322100     


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEc-ccceeecccCCCCCceeeeeeeh
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR-TDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r-~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                         +...++         ++++. .|..      ..|+++. .+..+...|.+++.+........
T Consensus       106 ---~~~~~~---------~s~~~-spDG------~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~  151 (426)
T d1hzua2         106 ---EARSVE---------SSKFK-GYED------RYTIAGAYWPPQFAIMDGETLEPKQIVSTRG  151 (426)
T ss_dssp             ---EEEEEE---------ECCST-TCTT------TEEEEEEEESSEEEEEETTTCCEEEEEECCE
T ss_pred             ---CCcceE---------Eeeee-cCCC------CEEEEeecCCCeEEEEcCCccceeEEeeccC
Confidence               000000         00111 1111      3566654 78899999999999887665443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.61  E-value=0.15  Score=50.84  Aligned_cols=117  Identities=8%  Similarity=-0.051  Sum_probs=72.9

Q ss_pred             ccccceeeecCCcchhhhccc-cccccCCcchhhhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCCCCCcc
Q 042769           30 ELTNSFFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSST  107 (549)
Q Consensus        30 ~~~~~~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~  107 (549)
                      ...+.+++.-++||.+..+|. .|+..=.+..+..+++- ++++|| .+|++|.|+++..+|.+||+..-....+...+ 
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v-~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-  106 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS-RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-  106 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEE-EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE-EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-
Confidence            344555789999999999999 67775555555544433 566688 48889999999999999998533222111000 


Q ss_pred             ccchhhhcccccccccchHHHHhhccCccccccccCceEEEE-EcccceeecccCCCCCceeeee
Q 042769          108 LQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI-TRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i-~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                             ..+++         +.++ .+|..      ..||+ ++.+.++..+|.++|++.=.+.
T Consensus       107 -------~~~~~---------~s~~-~SpDG------~~l~vs~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         107 -------ARSIE---------TSKM-EGWED------KYAIAGAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             -------EEEEE---------ECCS-TTCTT------TEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             -------CCCeE---------Eecc-cCCCC------CEEEEEcCCCCeEEEEeCccccceeeec
Confidence                   00000         0011 11111      35555 5678999999999998775444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.45  E-value=0.19  Score=46.61  Aligned_cols=113  Identities=5%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             ccccc-ce-eeecCCcchhhhccccccccCCcchhhhhhcCCCcccccc--eeeccee-eEEEEEEccccceeeecCCCC
Q 042769           29 SELTN-SF-FIDCGEDWGLYAHGLLGRMKLPQSIDDYVKTAPHITEEGA--VTLGSKT-TTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        29 ~~~~~-~~-~~~~~~d~~ly~~~~~g~~~~~~~~~~~v~~sP~~~~dg~--v~~Gsk~-~~~~~vda~tG~~~~~~~~~~  103 (549)
                      +..++ ++ ++....+|.+|..+..|.......-..-| .+++.++||.  ++.|..+ .+++..|+++|+......-..
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v-~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~   86 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRI-RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG   86 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCE-EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCE-EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc
Confidence            33444 44 44444578999998844332222223334 4577888993  3445444 478999999999875432221


Q ss_pred             CCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeeee
Q 042769          104 SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMTV  172 (549)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~~  172 (549)
                      ....                        ...+|..      ..|..+..++.++..+..+++..-.+..
T Consensus        87 ~v~~------------------------~~~spdg------~~l~~~~~~~~~~~~~~~~~~~~~~~~~  125 (360)
T d1k32a3          87 NVFA------------------------MGVDRNG------KFAVVANDRFEIMTVDLETGKPTVIERS  125 (360)
T ss_dssp             SEEE------------------------EEECTTS------SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEe------------------------eeecccc------cccceeccccccccccccccceeeeeec
Confidence            0000                        0012211      5888899999999999988876544433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.24  E-value=0.076  Score=47.87  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-hhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      .++.++.||.++..+. +|.....+.... .|. +-+.++|| .++.|+.|+++...|..+|+++.++...
T Consensus       219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h  288 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR-GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH  288 (317)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred             eeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE-EEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence            3677888999888887 555433333211 111 11233355 4677999999999999999999888654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.15  Score=48.02  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhh---cCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccc
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVK---TAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQN  110 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~---~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~  110 (549)
                      .++.|+.||.++..|. +|.....+...+.|.   -+|   .+..+++|+.++.++..|..+++....+...+....+  
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v--  271 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP---TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL--  271 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT---TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE--
T ss_pred             ccccccccccccccccccceeecccccccceEEEEEcc---cccccceeccccccccccccccccccccccccccceE--
Confidence            3677888999988887 555433333333222   133   1336788999999999999999986544332210000  


Q ss_pred             hhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          111 EEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                                            ..++.      ...|+.|+.|+.|+..|..+|+......
T Consensus       272 ----------------------~~s~~------g~~l~s~s~Dg~i~iwd~~~~~~~~~~~  304 (337)
T d1gxra_         272 ----------------------KFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQSK  304 (337)
T ss_dssp             ----------------------EECTT------SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ----------------------EECCC------CCEEEEEeCCCeEEEEECCCCCEEEEcc
Confidence                                  01221      1578889999999999999999987764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=86.10  E-value=0.42  Score=42.91  Aligned_cols=68  Identities=7%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             eee-cceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEE-Eccc
Q 042769           76 VTL-GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFI-TRTD  153 (549)
Q Consensus        76 v~~-Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i-~r~d  153 (549)
                      +|| +++++++..+|.+||+++.++..++.+.++                        ..+|..      ..||+ +..+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~v------------------------a~spdG------~~l~v~~~~~   53 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGA------------------------VISPDG------TKVYVANAHS   53 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE------------------------EECTTS------SEEEEEEGGG
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECCCCceEE------------------------EEeCCC------CEEEEEECCC
Confidence            454 578999999999999999998876421100                        022211      45665 4678


Q ss_pred             ceeecccCCCCCceeeeeee
Q 042769          154 YTLQSFEPNSDNVSWSMTVA  173 (549)
Q Consensus       154 ~~l~a~d~~~g~~~Wn~~~~  173 (549)
                      +.|+.+|.++++....+..+
T Consensus        54 ~~i~v~d~~t~~~~~~~~~~   73 (301)
T d1l0qa2          54 NDVSIIDTATNNVIATVPAG   73 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEEECCCCceeeeeecc
Confidence            99999999999998877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.34  E-value=0.22  Score=46.39  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             Ccchhhhccc-cccccCCcchhhhhhcCCCcccccc-eee----------cceeeEEEEEEccccceeeecCCCCCCccc
Q 042769           41 EDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGA-VTL----------GSKTTTVFVLEAKTGRLIRTYGSPHSSSTL  108 (549)
Q Consensus        41 ~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~-v~~----------Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~  108 (549)
                      .+..+|.+|. +|+......... . .+++++.||. +|+          |+.++.+..+|+.||+.+.+...+......
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~-~-~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~  103 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGF-L-PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  103 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECS-S-CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CcCeEEEEECCCCcEEEEEECCC-C-CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee
Confidence            4566888888 676544333322 1 2457888995 665          567899999999999999887665411100


Q ss_pred             cchhhhcccccccccchHHHHhhccCccccccccCceEEEEEc--ccceeecccCCCCCceeeeeeehhhh
Q 042769          109 QNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITR--TDYTLQSFEPNSDNVSWSMTVAEIGY  177 (549)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r--~d~~l~a~d~~~g~~~Wn~~~~~~~a  177 (549)
                      ...             .+..   -..++.      ...+++.+  .+..++.+|..+|+..-.+.+.....
T Consensus       104 ~~~-------------~~~~---~~~s~d------g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_         104 VGT-------------YPWM---TSLTPD------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             BSC-------------CGGG---EEECTT------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             cCC-------------CCce---EEEecC------CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence            000             0000   001221      14666664  46678889999999888777655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.33  E-value=0.32  Score=48.17  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=52.4

Q ss_pred             cccccce--eeecCCcchhhhccc-cccccCCcc-----hhhhhhcCCCcccccc-eee-cceeeEEEEEEccccceeee
Q 042769           29 SELTNSF--FIDCGEDWGLYAHGL-LGRMKLPQS-----IDDYVKTAPHITEEGA-VTL-GSKTTTVFVLEAKTGRLIRT   98 (549)
Q Consensus        29 ~~~~~~~--~~~~~~d~~ly~~~~-~g~~~~~~~-----~~~~v~~sP~~~~dg~-v~~-Gsk~~~~~~vda~tG~~~~~   98 (549)
                      -++++++  ++.++.||.+...|. .|..+...+     -..-+.-+|..+.||. +|+ ++.++++-.+|+.||+.+.+
T Consensus        67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~  146 (432)
T d1qksa2          67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  146 (432)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceee
Confidence            4566665  567788999888886 444322221     2334667888898995 555 66789999999999999988


Q ss_pred             cCCC
Q 042769           99 YGSP  102 (549)
Q Consensus        99 ~~~~  102 (549)
                      +...
T Consensus       147 ~~~~  150 (432)
T d1qksa2         147 QSTR  150 (432)
T ss_dssp             EECC
T ss_pred             eccC
Confidence            7654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.50  E-value=0.68  Score=42.80  Aligned_cols=71  Identities=13%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             cc-ceee-----cceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceE
Q 042769           73 EG-AVTL-----GSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYL  146 (549)
Q Consensus        73 dg-~v~~-----Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (549)
                      || .+|+     ++-++++|++|++||+++++...+..+...                         .+|..      ..
T Consensus        12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a-------------------------~SpDg------~~   60 (355)
T d2bbkh_          12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPV-------------------------VADDG------SF   60 (355)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEE-------------------------ECTTS------SC
T ss_pred             CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceE-------------------------EcCCC------CE
Confidence            55 4566     356789999999999999988664321100                         12211      35


Q ss_pred             EEEE----------cccceeecccCCCCCceeeeeeeh
Q 042769          147 LFIT----------RTDYTLQSFEPNSDNVSWSMTVAE  174 (549)
Q Consensus       147 v~i~----------r~d~~l~a~d~~~g~~~Wn~~~~~  174 (549)
                      ||+.          ..|+.|+.+|..+|+.++.+....
T Consensus        61 l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~   98 (355)
T d2bbkh_          61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD   98 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred             EEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCC
Confidence            6653          458899999999999998876653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.19  E-value=0.67  Score=45.09  Aligned_cols=66  Identities=3%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             eecceeeEEEEEEccccceeeecCCCCCCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEccccee
Q 042769           77 TLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTL  156 (549)
Q Consensus        77 ~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l  156 (549)
                      ...+.++++..+|.+||+++.++..+.+..++                        ..+|..      ..+|++..|++|
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~v------------------------afSPDG------k~l~~~~~d~~v   85 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHIS------------------------RMSASG------RYLLVIGRDARI   85 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCSSEEEE------------------------EECTTS------CEEEEEETTSEE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEE------------------------EECCCC------CEEEEEeCCCCE
Confidence            44677899999999999999999876421100                        123322      688999999999


Q ss_pred             ecccCCCCCceeeeee
Q 042769          157 QSFEPNSDNVSWSMTV  172 (549)
Q Consensus       157 ~a~d~~~g~~~Wn~~~  172 (549)
                      +.+|.++|+...-.++
T Consensus        86 ~vwd~~t~~~~~~~~i  101 (426)
T d1hzua2          86 DMIDLWAKEPTKVAEI  101 (426)
T ss_dssp             EEEETTSSSCEEEEEE
T ss_pred             EEEEccCCceeEEEEE
Confidence            9999999987655443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.01  E-value=0.29  Score=47.16  Aligned_cols=121  Identities=13%  Similarity=0.077  Sum_probs=68.9

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhh--hcCCC----ccccc-ceeecceee---EEEEEEccccceeeecCCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYV--KTAPH----ITEEG-AVTLGSKTT---TVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v--~~sP~----~~~dg-~v~~Gsk~~---~~~~vda~tG~~~~~~~~~~  103 (549)
                      .+..|+.||.+...|. .|+....+.....+  +..|+    +++|| .+..||.|+   .+..-|++||+.++++....
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            4678999999988887 56554433322211  22221    23355 577788775   47777999999999887643


Q ss_pred             CCccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          104 SSSTLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ..........+-.+-+.          .-..+|      ....|+-++.|++|+.-|.++|+....++
T Consensus       277 ~~~~~~~~~~gH~~~V~----------~l~fsp------d~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVM----------SLSFND------SGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             -------CCBSBSSCEE----------EEEECS------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeeeecccCcee----------eeccCC------CCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            11000000000000000          000111      12578889999999999999999887774

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.77  E-value=0.29  Score=45.87  Aligned_cols=67  Identities=13%  Similarity=0.042  Sum_probs=44.1

Q ss_pred             eeecCCcchhhhccc-cccccCCcchhhhh---hcC----CCcccc-cceeecceeeEEEEEEccccceeeecCCC
Q 042769           36 FIDCGEDWGLYAHGL-LGRMKLPQSIDDYV---KTA----PHITEE-GAVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        36 ~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v---~~s----P~~~~d-g~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      ++.|+.||.++..+. ++.....|......   +..    =++++| ..++.||.|++++.-|..||+++.++...
T Consensus       204 l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence            677888999888876 55443333322110   111    122223 46788999999999999999999887664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.84  E-value=0.27  Score=46.08  Aligned_cols=68  Identities=16%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhh-hhh---cCCCccccc-ceeecceeeEEEEEEccccceeeecCCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDD-YVK---TAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPH  103 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~-~v~---~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~  103 (549)
                      .++.|+.||.++..|. +|...-.+.... .+.   -+++.. || .+..||.|+++..-|..+|+.+.++....
T Consensus       220 ~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  293 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK  293 (325)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             eccccccccceeeeeeccccccccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecC
Confidence            3677889999999887 665433333211 111   122223 55 68889999999999999999998877643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.51  E-value=0.53  Score=44.14  Aligned_cols=120  Identities=13%  Similarity=0.059  Sum_probs=59.2

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhh---hhcCC----Cccccc-ceeecceeeEEEEEEccccceeeecCCCCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDY---VKTAP----HITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSPHSS  105 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~---v~~sP----~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~  105 (549)
                      .++.|+.||.++..+. .|.....+.....   -+..+    +++.|| .++.|+.|+++...|..+++.......+...
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  298 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence            3677889999998887 5554333322111   01111    223344 5778999999999999988876555443311


Q ss_pred             ccccchhhhcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          106 STLQNEEQKSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                      ............+.           ....++.      ...|+.|+.|+.|+.+|.++|+....+.
T Consensus       299 ~~~~~~~~~~~~v~-----------~~~~s~~------~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         299 TCEVTYIGHKDFVL-----------SVATTQN------DEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             CEEEEEECCSSCEE-----------EEEECGG------GCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ceeeecccccceEE-----------EEEECCC------CCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            00000000000000           0001211      1588999999999999999999876654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.39  E-value=0.3  Score=44.49  Aligned_cols=67  Identities=13%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchh---hhhhcCCCccccc-ceeecceeeEEEEEEccccceeeecCCC
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSID---DYVKTAPHITEEG-AVTLGSKTTTVFVLEAKTGRLIRTYGSP  102 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~---~~v~~sP~~~~dg-~v~~Gsk~~~~~~vda~tG~~~~~~~~~  102 (549)
                      .++.|+.||.++..+. .+.....+...   ..|.+ =++++|| .+++|+.|++++..|..+|+.+.++...
T Consensus       240 ~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITS-VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE-EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEEeCCCeEEEEeecccccccccccccccCceEE-EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC
Confidence            4788889999888886 33322212111   11111 1123344 6888999999999999999999888654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.48  Score=42.78  Aligned_cols=105  Identities=14%  Similarity=0.098  Sum_probs=66.6

Q ss_pred             eeeecCCcchhhhccc-cccccCCcchhhhhhcCCCcccccceeecceeeEEEEEEccccceeeecCCCCCCccccchhh
Q 042769           35 FFIDCGEDWGLYAHGL-LGRMKLPQSIDDYVKTAPHITEEGAVTLGSKTTTVFVLEAKTGRLIRTYGSPHSSSTLQNEEQ  113 (549)
Q Consensus        35 ~~~~~~~d~~ly~~~~-~g~~~~~~~~~~~v~~sP~~~~dg~v~~Gsk~~~~~~vda~tG~~~~~~~~~~~~~~~~~~~~  113 (549)
                      .++.++.|+.+...+. .+.....+.........-... ...+..|+.|+++...|..+++.+.++.......       
T Consensus       149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v-------  220 (342)
T d2ovrb2         149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-------  220 (342)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE-------
T ss_pred             eeeeecCCCeEEEeecccceeeEEEcCcccccccccCC-CCEEEEEeCCCeEEEeecccceeeeEecccccce-------
Confidence            4677788888888776 333322222211111111112 4467889999999999999999998876643110       


Q ss_pred             hcccccccccchHHHHhhccCccccccccCceEEEEEcccceeecccCCCCCceeeee
Q 042769          114 KSASYKHDKVNNEQLVKSGLTNTAELQHKEPYLLFITRTDYTLQSFEPNSDNVSWSMT  171 (549)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~r~d~~l~a~d~~~g~~~Wn~~  171 (549)
                            .           . ..+      +++.++.|+.|+.++..|..+++....+.
T Consensus       221 ------~-----------~-~~~------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  254 (342)
T d2ovrb2         221 ------S-----------G-MEL------KDNILVSGNADSTVKIWDIKTGQCLQTLQ  254 (342)
T ss_dssp             ------E-----------E-EEE------ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ------e-----------E-Eec------CCCEEEEEcCCCEEEEEeccccccccccc
Confidence                  0           0 111      12589999999999999988887766553